RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10879
(245 letters)
>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR;
glycosyltransferase, developmental protein,
transmembrane, G apparatus, notch signaling; 1.8A {Mus
musculus} PDB: 2j0b_A*
Length = 280
Score = 70.2 bits (171), Expect = 2e-14
Identities = 34/198 (17%), Positives = 72/198 (36%), Gaps = 19/198 (9%)
Query: 22 IVILILTSSKNYIRRKN-IRDTWIKNIEKYQVKYLFSIGNKENVVDVKLKEEIRRYDDIL 80
I I + T+ + R + + DTW+ I + ++F+ E + + +
Sbjct: 15 IFIAVKTTWAFHRSRLDLLLDTWVSRIRQQT--FIFTDSPDERLQERLGPHLVVTQCS-- 70
Query: 81 LLNQVPDEYSSLSQKVLHSFKYIYEHFDFQYLLKCDDDTFVRVPNIIHELENKFHYEKKL 140
+ +LS K+ F ++ DDD +V ++ L+ F ++ +
Sbjct: 71 ----AEHSHPALSCKMAAEFDAFLVS-GLRWFCHVDDDNYVNPKALLQLLK-TFPQDRDV 124
Query: 141 YWGFFDGRARVRRAGKWKEKNWFLCDRYLPYALGGGYVLSHLLVKFISE---NSHMLSS- 196
Y G R A + + K R+ G G+ ++ L + SH + +
Sbjct: 125 YVG-KPSLNRPIHASELQSKQRTKLVRFWFATGGAGFCINRQLALKMVPWASGSHFVDTS 183
Query: 197 ---YISEDVSVGVWLSAL 211
+ +D +VG +
Sbjct: 184 ALIRLPDDCTVGYIIECK 201
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 0.001
Identities = 45/268 (16%), Positives = 88/268 (32%), Gaps = 76/268 (28%)
Query: 6 NQTGLSKFKNLKHSYFIVILILTSSKNYIRR---KNIRDTWIKNIEKYQVKYLFSI---- 58
N T L K K L +Y +++ +R K + + + + L +I
Sbjct: 112 NDTTLVKTKELIKNYI-------TARIMAKRPFDKKSNSALFRAVGEGNAQ-LVAIFGGQ 163
Query: 59 GNKENVVDVKLKEEIR----RYDDIL--LLNQVPDEYSSLSQKVLHSFKYIYEHFDFQYL 112
GN ++ + E+R Y ++ L+ + S L + L + K + +
Sbjct: 164 GNTDDYFE-----ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW 218
Query: 113 LKC-----DDDTFVRVP---NIIHELENKFHYE---KKLYWGFFDGRARVR--------- 152
L+ D D + +P +I + HY K L + + R+ ++
Sbjct: 219 LENPSNTPDKDYLLSIPISCPLI-GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL 277
Query: 153 -------RAGKWKEKNWFLC--DRYLPYALGGGY---------VLSHLLVKFISEN---- 190
W+ F + + G L +++ EN
Sbjct: 278 VTAVAIAETDSWES---FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV 334
Query: 191 -SHMLSSYISEDVSVGVWLSALDITRYH 217
S MLS IS +++ ++ T H
Sbjct: 335 PSPMLS--IS-NLTQEQVQDYVNKTNSH 359
Score = 31.2 bits (70), Expect = 0.38
Identities = 44/275 (16%), Positives = 85/275 (30%), Gaps = 113/275 (41%)
Query: 3 ISANQTGLSK---FKNLK----HSYFIVILILTSSKNYIRRKNIRDTW---IKNIEKYQV 52
++A G + LK HS +V + + D+W ++ K +
Sbjct: 251 VTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAET---------DSWESFFVSVRKA-I 300
Query: 53 KYLFSIG-------------------NKEN----------VVDVKLKEEIRRYDDILLLN 83
LF IG + EN + ++ +E+++ Y + N
Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLT-QEQVQDY--VNKTN 357
Query: 84 QVPDEYSSLSQKVLHSFKYIYEHFDFQYLLKCDDDTFVRV---PNIIHELENKFHYEKKL 140
+ ++V I L V V P ++ L K
Sbjct: 358 S----HLPAGKQV-----EIS--------LVNGAKNLV-VSGPPQSLYGLNLTLRKAKAP 399
Query: 141 YWGFFDG--RARVRRAGKWKEKNWFLCDRYLPYALGGGYVLSHLLVKFISE--NSHMLSS 196
G ++R+ + + K F +R+LP ++ +SH+L
Sbjct: 400 -----SGLDQSRIPFS---ERKLKFS-NRFLP----------------VASPFHSHLLVP 434
Query: 197 ---YISEDV---SVGVWLSALDITRYH-----DVR 220
I++D+ +V + I Y D+R
Sbjct: 435 ASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLR 469
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.045
Identities = 9/48 (18%), Positives = 15/48 (31%), Gaps = 22/48 (45%)
Query: 48 EKYQVKYLFSIGNKENVVDVKLKEEIRRYDDILLLNQVPDEYSSLSQK 95
EK +K KL+ ++ Y D +L+ K
Sbjct: 18 EKQALK--------------KLQASLKLY--------ADDSAPALAIK 43
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.092
Identities = 26/168 (15%), Positives = 53/168 (31%), Gaps = 51/168 (30%)
Query: 47 IEKYQVKYLFSIGNKENVVDVKLKEEIRRYDDILLLNQ--VPDEYSSLSQKVLHSFKYIY 104
+EK + SI + +++K+K E +++ +P + S + +Y Y
Sbjct: 417 VEKQPKESTISIPSIY--LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 105 EHFDFQYLLKCDDDTFVRVPNIIHELENKFHYEK-----KLY--WGFFDGRARVRRAGKW 157
H I H L+N H E+ ++ + F ++R
Sbjct: 475 SH-------------------IGHHLKNIEHPERMTLFRMVFLDFRFL--EQKIRHDS-- 511
Query: 158 KEKNWFLCDRYLPYALGGGYVLSHLLV-----KFISENSHMLSSYISE 200
W G +L+ L +I +N ++
Sbjct: 512 --TAW----------NASGSILNTLQQLKFYKPYICDNDPKYERLVNA 547
>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction,
SAM domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: a.60.1.2
Length = 91
Score = 27.2 bits (60), Expect = 1.5
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 188 SENSHMLSSYISEDVSVGVWLSALDITRYHD 218
S S +SS +V + +L ++++ +Y
Sbjct: 2 SSGSSGMSSVSEVNVDIKDFLMSINLEQYLL 32
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis}
SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Length = 456
Score = 28.6 bits (64), Expect = 1.9
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 37 KNIRDTWIKNIEKYQVKYLFSIGNKENVVDVKLKEEIRRYDDILL 81
K+I + K E + ++ GN V+ E RYD ++
Sbjct: 61 KSISKQFEKTAEDPRFRF---FGNVVVGEHVQPGELSERYDAVIY 102
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A
{Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Length = 279
Score = 27.7 bits (62), Expect = 3.0
Identities = 14/83 (16%), Positives = 33/83 (39%), Gaps = 14/83 (16%)
Query: 31 KNYIRRKNIRDTWIKNIEKYQVKYLFSIGNKENVVDVKLKEEIRRYDDIL---LLNQVPD 87
+ + ++ +D + IEKY VD ++ +D L L+ + PD
Sbjct: 19 EEFFSLQDYKDRVFEAIEKYPNVRSI-------EVDY---LDLEMFDPDLADLLIEK-PD 67
Query: 88 EYSSLSQKVLHSFKYIYEHFDFQ 110
+ +Q+ + + + ++ D
Sbjct: 68 DVIRAAQQAIRNIDRLRKNVDLN 90
>2lmr_A ODIN, ankyrin repeat and SAM domain-containing protein; signaling
protein; NMR {Homo sapiens}
Length = 101
Score = 26.8 bits (59), Expect = 3.2
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 181 HLLVKFISENSHMLSSYISEDVSVGVWLSALDITRYHD 218
H + SHM+S + + SVG WL ++ + +Y
Sbjct: 9 HHSSGLVPRGSHMISGLRTLEQSVGEWLESIGLQQYES 46
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase;
2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Length = 369
Score = 27.6 bits (62), Expect = 3.7
Identities = 9/30 (30%), Positives = 11/30 (36%), Gaps = 11/30 (36%)
Query: 138 KKLYWGFFD-----------GRARVRRAGK 156
K LY + G+ARV R G
Sbjct: 221 KILYRAPREEVPEGDYVVEIGKARVAREGD 250
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase,
multi-enzyme complex, acylation, oxidative
decarboxylation, maple syrup urine disease; HET: TDP;
1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB:
1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B*
1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B*
2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Length = 342
Score = 27.5 bits (62), Expect = 3.7
Identities = 6/30 (20%), Positives = 9/30 (30%), Gaps = 11/30 (36%)
Query: 138 KKLYWGFFD-----------GRARVRRAGK 156
K LY + +A V + G
Sbjct: 191 KILYRAAAEEVPIEPYNIPLSQAEVIQEGS 220
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.427
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,878,554
Number of extensions: 232174
Number of successful extensions: 491
Number of sequences better than 10.0: 1
Number of HSP's gapped: 487
Number of HSP's successfully gapped: 24
Length of query: 245
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 154
Effective length of database: 4,160,982
Effective search space: 640791228
Effective search space used: 640791228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.8 bits)