RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10879
         (245 letters)



>d2o34a1 d.96.2.2 (A:1-248) Hypothetical protein DVU1097
           {Desulfovibrio vulgaris [TaxId: 881]}
          Length = 248

 Score = 27.1 bits (60), Expect = 1.8
 Identities = 12/58 (20%), Positives = 18/58 (31%)

Query: 185 KFISENSHMLSSYISEDVSVGVWLSALDITRYHDVRFDTEFQSRGCNNSYLIVHKQNM 242
           + I EN   L  Y   D  VG+            +          C +S  I H  ++
Sbjct: 122 ELIVENGGDLYLYSERDRVVGILPDPASGDMVGILVRAGTAPVSLCGSSARIGHSLSL 179


>d1ucva_ a.60.1.2 (A:) Ephrin type-A receptor 8, C-terminal domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 81

 Score = 25.3 bits (55), Expect = 2.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 199 SEDVSVGVWLSALDITRYHDV 219
           S  ++VG WL ++ + RY D 
Sbjct: 5   SSGLTVGDWLDSIRMGRYRDH 25


>d1wlqc_ a.4.5.52 (C:) DNA replication factor Cdt1 {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 187

 Score = 26.0 bits (57), Expect = 3.3
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 5/70 (7%)

Query: 27  LTSSKNYIRRKNIRDTWIKNIEKYQVKYLFSIGNKENVVDVKLKEEIRRYDDILLLNQVP 86
           LT++    RR+  R   ++ +++    +L S+     V D +L     R++    +++VP
Sbjct: 120 LTATCLLQRRQVFRQNLVERVKEQHKVFLASLNPPMAVPDDQLTRWHPRFN----VDEVP 175

Query: 87  D-EYSSLSQK 95
           D E + L Q 
Sbjct: 176 DIEPAELPQP 185


>d2ch4w1 b.40.7.1 (W:9-147) Chemotaxis protein CheW {Thermotoga
           maritima [TaxId: 2336]}
          Length = 139

 Score = 25.5 bits (55), Expect = 4.0
 Identities = 9/80 (11%), Positives = 18/80 (22%), Gaps = 1/80 (1%)

Query: 51  QVKYL-FSIGNKENVVDVKLKEEIRRYDDILLLNQVPDEYSSLSQKVLHSFKYIYEHFDF 109
           + + L F I  +    DV   E +    DI  + +       +          +      
Sbjct: 2   EFEVLSFEIDEQALAFDVDNIEMVIEKSDITPVPKSRHFVEGVINLRGRIIPVVNLAKIL 61

Query: 110 QYLLKCDDDTFVRVPNIIHE 129
                      + V      
Sbjct: 62  GISFDEQKMKSIIVARTKDV 81


>d2f48a1 c.89.1.1 (A:4-553) Pyrophosphate-dependent
           phosphofructokinase {Lyme disease spirochete (Borrelia
           burgdorferi) [TaxId: 139]}
          Length = 550

 Score = 26.2 bits (57), Expect = 4.6
 Identities = 5/34 (14%), Positives = 15/34 (44%)

Query: 26  ILTSSKNYIRRKNIRDTWIKNIEKYQVKYLFSIG 59
           I++S +  I  +   +  +   ++  +  +  IG
Sbjct: 138 IVSSGRTKIETEEHYNKALFVAKENNLNAIIIIG 171


>d2asra_ a.24.2.1 (A:) Aspartate receptor, ligand-binding domain
           {Escherichia coli [TaxId: 562]}
          Length = 142

 Score = 24.8 bits (54), Expect = 7.1
 Identities = 10/78 (12%), Positives = 23/78 (29%), Gaps = 7/78 (8%)

Query: 2   NISANQTGLSKFKNLKHSYFIVILILTSSKNYIRRKNIRDTWIKNIEKYQVKYLFSIGNK 61
           +++     ++  +N+   Y      LT   +Y+   N    + +  +  Q          
Sbjct: 72  SMAPLPEMVATSRNIDEKYKNYYTALTELIDYLDYGNTGAYFAQPTQGMQNAM------- 124

Query: 62  ENVVDVKLKEEIRRYDDI 79
                       + Y DI
Sbjct: 125 GERFAQYALSSEKLYRDI 142


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.139    0.427 

Gapped
Lambda     K      H
   0.267   0.0584    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 985,376
Number of extensions: 49398
Number of successful extensions: 122
Number of sequences better than 10.0: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 15
Length of query: 245
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 162
Effective length of database: 1,268,006
Effective search space: 205416972
Effective search space used: 205416972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.1 bits)