BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1088
(905 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FSU|A Chain A, 4-Sulfatase (Human)
Length = 492
Score = 309 bits (791), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 154/330 (46%), Positives = 213/330 (64%), Gaps = 16/330 (4%)
Query: 57 SGPPHIIFILADDLGWNDVGFHGLDQIPTPNIDALAYSGIILKNYYTVQLCTPSRSAIMT 116
S PPH++F+LADDLGWNDVGFHG +I TP++DALA G++L NYYT L TPSRS ++T
Sbjct: 1 SRPPHLVFLLADDLGWNDVGFHG-SRIRTPHLDALAAGGVLLDNYYTQPLXTPSRSQLLT 59
Query: 117 GKHPIHTGMQHNVLYGCERGGLPLSEKILPQYLKELGYRTRIVGKWHLGFYKKEYTPTFR 176
G++ I TG+QH +++ C+ +PL EK+LPQ LKE GY T +VGKWHLG Y+KE PT R
Sbjct: 60 GRYQIRTGLQHQIIWPCQPSCVPLDEKLLPQLLKEAGYTTHMVGKWHLGMYRKECLPTRR 119
Query: 177 GFESHLGYWTGHQDYFDHS------AEEMKMWGLDMRRDLEPAWDLHGKYSTDVFTAEAV 230
GF+++ GY G +DY+ H A + LD R E A YST++FT A+
Sbjct: 120 GFDTYFGYLLGSEDYYSHERCTLIDALNVTRCALDFRDGEEVATGYKNMYSTNIFTKRAI 179
Query: 231 DIIHNHSTDEPLFLYLAHAATHSANPYEPLQAPDHYLNIHRHIEDFKRSKFAAILHKLDE 290
+I NH ++PLFLYLA + H EPLQ P+ YL + I+D R +A ++ +DE
Sbjct: 180 ALITNHPPEKPLFLYLALQSVH-----EPLQVPEEYLKPYDFIQDKNRHHYAGMVSLMDE 234
Query: 291 SVGKVVEALEQRRMLSNSIIVFVSDXXXXXXXXXXXXXSNWPLRGVKNTLWEGGVRGAGL 350
+VG V AL+ + +N++ +F +D +NWPLRG K +LWEGGVRG G
Sbjct: 235 AVGNVTAALKSSGLWNNTVFIFSTD----NGGQTLAGGNNWPLRGRKWSLWEGGVRGVGF 290
Query: 351 IWSPLLESRGIVAEQYVHVSDWLPTLLSAA 380
+ SPLL+ +G+ + +H+SDWLPTL+ A
Sbjct: 291 VASPLLKQKGVKNRELIHISDWLPTLVKLA 320
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 1 MQHNVLYGCERGGLPLSEKILPQYLKELGYRTRIMA 36
+QH +++ C+ +PL EK+LPQ LKE GY T ++
Sbjct: 68 LQHQIIWPCQPSCVPLDEKLLPQLLKEAGYTTHMVG 103
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 510 IDGIDVWSVLSRNEPSKRNTILHNID 535
+DG DVW +S PS R +LHNID
Sbjct: 330 LDGFDVWKTISEGSPSPRIELLHNID 355
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 575 IDGIDVWSVLSRNEPSKRNTILHNID 600
+DG DVW +S PS R +LHNID
Sbjct: 330 LDGFDVWKTISEGSPSPRIELLHNID 355
>pdb|4FDI|A Chain A, The Molecular Basis Of Mucopolysaccharidosis Iv A
pdb|4FDI|B Chain B, The Molecular Basis Of Mucopolysaccharidosis Iv A
pdb|4FDJ|A Chain A, The Molecular Basis Of Mucopolysaccharidosis Iv A, Complex
With Galnac
pdb|4FDJ|B Chain B, The Molecular Basis Of Mucopolysaccharidosis Iv A, Complex
With Galnac
Length = 502
Score = 167 bits (422), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 106/345 (30%), Positives = 170/345 (49%), Gaps = 42/345 (12%)
Query: 59 PPHIIFILADDLGWNDVGFHGLDQIPTPNIDALAYSGIILKNYYTVQ-LCTPSRSAIMTG 117
PP+I+ +L DD+GW D+G +G TPN+D +A G++ N+Y+ L +PSR+A++TG
Sbjct: 4 PPNILLLLMDDMGWGDLGVYGEPSRETPNLDRMAAEGLLFPNFYSANPLXSPSRAALLTG 63
Query: 118 KHPIHTGMQHNVLYGCER-------GGLPLSEKILPQYLKELGYRTRIVGKWHLGFYKKE 170
+ PI G + GG+P SE++LP+ LK+ GY ++IVGKWHLG ++ +
Sbjct: 64 RLPIRNGFYTTNAHARNAYTPQEIVGGIPDSEQLLPELLKKAGYVSKIVGKWHLG-HRPQ 122
Query: 171 YTPTFRGFESHLGYWTGHQDYFDHSAEEMKMWGLDMRRDLEPAWDLHGKYS--------- 221
+ P GF+ G H +D+ A + + RD W++ G+Y
Sbjct: 123 FHPLKHGFDEWFGSPNCHFGPYDNKARP----NIPVYRD----WEMVGRYYEEFPINLKT 174
Query: 222 -----TDVFTAEAVDIIHNHSTDEPLFLYLAHAATHSANPYEPLQAPDHYLNIHRHIEDF 276
T ++ EA+D I + P FLY A ATH+ P+ A +L
Sbjct: 175 GEANLTQIYLQEALDFIKRQARHHPFFLYWAVDATHA-----PVYASKPFLGTS------ 223
Query: 277 KRSKFAAILHKLDESVGKVVEALEQRRMLSNSIIVFVSDXXXXXXXXXXXXXSNWPLRGV 336
+R ++ + ++D+S+GK++E L+ + N+ + F SD SN P
Sbjct: 224 QRGRYGDAVREIDDSIGKILELLQDLHVADNTFVFFTSDNGAALISAPEQGGSNGPFLCG 283
Query: 337 KNTLWEGGVRGAGLIWSPLLESRGIVAEQYVHVSDWLPTLLSAAN 381
K T +EGG+R L W P + G V+ Q + D T L+ A
Sbjct: 284 KQTTFEGGMREPALAWWPGHVTAGQVSHQLGSIMDLFTTSLALAG 328
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 20/25 (80%)
Query: 12 GGLPLSEKILPQYLKELGYRTRIMA 36
GG+P SE++LP+ LK+ GY ++I+
Sbjct: 89 GGIPDSEQLLPELLKKAGYVSKIVG 113
>pdb|1E2S|P Chain P, Crystal Structure Of An Arylsulfatase A Mutant C69a
Length = 489
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 109/350 (31%), Positives = 157/350 (44%), Gaps = 40/350 (11%)
Query: 59 PPHIIFILADDLGWNDVGFHGLDQIPTPNIDALAYSGIILKNYYT-VQLCTPSRSAIMTG 117
PP+I+ I ADDLG+ D+G +G TPN+D LA G+ ++Y V L TPSR+A++TG
Sbjct: 2 PPNIVLIFADDLGYGDLGCYGHPSSTTPNLDQLAAGGLRFTDFYVPVSLATPSRAALLTG 61
Query: 118 KHPIHTGMQHNVLYGCERGGLPLSEKILPQYLKELGYRTRIVGKWHLGFYKK-EYTPTFR 176
+ P+ GM VL RGGLPL E + + L GY T + GKWHLG + + P +
Sbjct: 62 RLPVRMGMYPGVLVPSSRGGLPLEEVTVAEVLAARGYLTGMAGKWHLGVGPEGAFLPPHQ 121
Query: 177 GFESHLGYWTGH-----QDYFDHSAEEMKMWGLD-----------MRRDLEPAW--DLHG 218
GF LG H Q+ G D + + +P W L
Sbjct: 122 GFHRFLGIPYSHDQGPCQNLTCFPPATPCDGGCDQGLVPIPLLANLSVEAQPPWLPGLEA 181
Query: 219 KYSTDVFTAEAVDIIHN-HSTDEPLFLYLAHAATHSANPYEPLQAPDHYLNIHRHIEDFK 277
+Y A A D++ + D P FLY A TH + E
Sbjct: 182 RY-----MAFAHDLMADAQRQDRPFFLYYASHHTHYPQ-----------FSGQSFAERSG 225
Query: 278 RSKFAAILHKLDESVGKVVEALEQRRMLSNSIIVFVSDXXXXXXXXXXXXXSNWPLRGVK 337
R F L +LD +VG ++ A+ +L ++++F +D S LR K
Sbjct: 226 RGPFGDSLMELDAAVGTLMTAIGDLGLLEETLVIFTADNGPETMRMSRGGCSGL-LRCGK 284
Query: 338 NTLWEGGVRGAGLIWSPLLESRGIVAEQYVHVSDWLPTLLSAANKSDIPN 387
T +EGGVR L + P + G+ E + D LPTL + A + +PN
Sbjct: 285 GTTYEGGVREPALAFWPGHIAPGVTHELASSL-DLLPTLAALAG-APLPN 332
>pdb|1E1Z|P Chain P, Crystal Structure Of An Arylsulfatase A Mutant C69s
Length = 489
Score = 140 bits (353), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 109/350 (31%), Positives = 157/350 (44%), Gaps = 40/350 (11%)
Query: 59 PPHIIFILADDLGWNDVGFHGLDQIPTPNIDALAYSGIILKNYYT-VQLCTPSRSAIMTG 117
PP+I+ I ADDLG+ D+G +G TPN+D LA G+ ++Y V L TPSR+A++TG
Sbjct: 2 PPNIVLIFADDLGYGDLGCYGHPSSTTPNLDQLAAGGLRFTDFYVPVSLSTPSRAALLTG 61
Query: 118 KHPIHTGMQHNVLYGCERGGLPLSEKILPQYLKELGYRTRIVGKWHLGFYKK-EYTPTFR 176
+ P+ GM VL RGGLPL E + + L GY T + GKWHLG + + P +
Sbjct: 62 RLPVRMGMYPGVLVPSSRGGLPLEEVTVAEVLAARGYLTGMAGKWHLGVGPEGAFLPPHQ 121
Query: 177 GFESHLGYWTGH-----QDYFDHSAEEMKMWGLD-----------MRRDLEPAW--DLHG 218
GF LG H Q+ G D + + +P W L
Sbjct: 122 GFHRFLGIPYSHDQGPCQNLTCFPPATPCDGGCDQGLVPIPLLANLSVEAQPPWLPGLEA 181
Query: 219 KYSTDVFTAEAVDIIHN-HSTDEPLFLYLAHAATHSANPYEPLQAPDHYLNIHRHIEDFK 277
+Y A A D++ + D P FLY A TH + E
Sbjct: 182 RY-----MAFAHDLMADAQRQDRPFFLYYASHHTHYPQ-----------FSGQSFAERSG 225
Query: 278 RSKFAAILHKLDESVGKVVEALEQRRMLSNSIIVFVSDXXXXXXXXXXXXXSNWPLRGVK 337
R F L +LD +VG ++ A+ +L ++++F +D S LR K
Sbjct: 226 RGPFGDSLMELDAAVGTLMTAIGDLGLLEETLVIFTADNGPETMRMSRGGCSGL-LRCGK 284
Query: 338 NTLWEGGVRGAGLIWSPLLESRGIVAEQYVHVSDWLPTLLSAANKSDIPN 387
T +EGGVR L + P + G+ E + D LPTL + A + +PN
Sbjct: 285 GTTYEGGVREPALAFWPGHIAPGVTHELASSL-DLLPTLAALAG-APLPN 332
>pdb|1E3C|P Chain P, Crystal Structure Of An Arylsulfatase A Mutant C69s Soaked
In Synthetic Substrate
Length = 489
Score = 140 bits (353), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 109/350 (31%), Positives = 157/350 (44%), Gaps = 40/350 (11%)
Query: 59 PPHIIFILADDLGWNDVGFHGLDQIPTPNIDALAYSGIILKNYYT-VQLCTPSRSAIMTG 117
PP+I+ I ADDLG+ D+G +G TPN+D LA G+ ++Y V L TPSR+A++TG
Sbjct: 2 PPNIVLIFADDLGYGDLGCYGHPSSTTPNLDQLAAGGLRFTDFYVPVSLSTPSRAALLTG 61
Query: 118 KHPIHTGMQHNVLYGCERGGLPLSEKILPQYLKELGYRTRIVGKWHLGFYKK-EYTPTFR 176
+ P+ GM VL RGGLPL E + + L GY T + GKWHLG + + P +
Sbjct: 62 RLPVRMGMYPGVLVPSSRGGLPLEEVTVAEVLAARGYLTGMAGKWHLGVGPEGAFLPPHQ 121
Query: 177 GFESHLGYWTGH-----QDYFDHSAEEMKMWGLD-----------MRRDLEPAW--DLHG 218
GF LG H Q+ G D + + +P W L
Sbjct: 122 GFHRFLGIPYSHDQGPCQNLTCFPPATPCDGGCDQGLVPIPLLANLSVEAQPPWLPGLEA 181
Query: 219 KYSTDVFTAEAVDIIHN-HSTDEPLFLYLAHAATHSANPYEPLQAPDHYLNIHRHIEDFK 277
+Y A A D++ + D P FLY A TH + E
Sbjct: 182 RY-----MAFAHDLMADAQREDRPFFLYYASHHTHYPQ-----------FSGQSFAERSG 225
Query: 278 RSKFAAILHKLDESVGKVVEALEQRRMLSNSIIVFVSDXXXXXXXXXXXXXSNWPLRGVK 337
R F L +LD +VG ++ A+ +L ++++F +D S LR K
Sbjct: 226 RGPFGDSLMELDAAVGTLMTAIGDLGLLEETLVIFTADNGPETMRMSRGGCSGL-LRCGK 284
Query: 338 NTLWEGGVRGAGLIWSPLLESRGIVAEQYVHVSDWLPTLLSAANKSDIPN 387
T +EGGVR L + P + G+ E + D LPTL + A + +PN
Sbjct: 285 GTTYEGGVREPALAFWPGHIAPGVTHELASSL-DLLPTLAALAG-APLPN 332
>pdb|1N2K|A Chain A, Crystal Structure Of A Covalent Intermediate Of Endogenous
Human Arylsulfatase A
pdb|1N2L|A Chain A, Crystal Structure Of A Covalent Intermediate Of Endogenous
Human Arylsulfatase A
pdb|1AUK|A Chain A, Human Arylsulfatase A
Length = 489
Score = 140 bits (352), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 109/350 (31%), Positives = 157/350 (44%), Gaps = 40/350 (11%)
Query: 59 PPHIIFILADDLGWNDVGFHGLDQIPTPNIDALAYSGIILKNYYT-VQLCTPSRSAIMTG 117
PP+I+ I ADDLG+ D+G +G TPN+D LA G+ ++Y V L TPSR+A++TG
Sbjct: 2 PPNIVLIFADDLGYGDLGCYGHPSSTTPNLDQLAAGGLRFTDFYVPVSLXTPSRAALLTG 61
Query: 118 KHPIHTGMQHNVLYGCERGGLPLSEKILPQYLKELGYRTRIVGKWHLGFYKK-EYTPTFR 176
+ P+ GM VL RGGLPL E + + L GY T + GKWHLG + + P +
Sbjct: 62 RLPVRMGMYPGVLVPSSRGGLPLEEVTVAEVLAARGYLTGMAGKWHLGVGPEGAFLPPHQ 121
Query: 177 GFESHLGYWTGH-----QDYFDHSAEEMKMWGLD-----------MRRDLEPAW--DLHG 218
GF LG H Q+ G D + + +P W L
Sbjct: 122 GFHRFLGIPYSHDQGPCQNLTCFPPATPCDGGCDQGLVPIPLLANLSVEAQPPWLPGLEA 181
Query: 219 KYSTDVFTAEAVDIIHN-HSTDEPLFLYLAHAATHSANPYEPLQAPDHYLNIHRHIEDFK 277
+Y A A D++ + D P FLY A TH + E
Sbjct: 182 RY-----MAFAHDLMADAQRQDRPFFLYYASHHTHYPQ-----------FSGQSFAERSG 225
Query: 278 RSKFAAILHKLDESVGKVVEALEQRRMLSNSIIVFVSDXXXXXXXXXXXXXSNWPLRGVK 337
R F L +LD +VG ++ A+ +L ++++F +D S LR K
Sbjct: 226 RGPFGDSLMELDAAVGTLMTAIGDLGLLEETLVIFTADNGPETMRMSRGGCSGL-LRCGK 284
Query: 338 NTLWEGGVRGAGLIWSPLLESRGIVAEQYVHVSDWLPTLLSAANKSDIPN 387
T +EGGVR L + P + G+ E + D LPTL + A + +PN
Sbjct: 285 GTTYEGGVREPALAFWPGHIAPGVTHELASSL-DLLPTLAALAG-APLPN 332
>pdb|1E33|P Chain P, Crystal Structure Of An Arylsulfatase A Mutant P426l
Length = 489
Score = 139 bits (351), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 109/350 (31%), Positives = 157/350 (44%), Gaps = 40/350 (11%)
Query: 59 PPHIIFILADDLGWNDVGFHGLDQIPTPNIDALAYSGIILKNYYT-VQLCTPSRSAIMTG 117
PP+I+ I ADDLG+ D+G +G TPN+D LA G+ ++Y V L TPSR+A++TG
Sbjct: 2 PPNIVLIFADDLGYGDLGCYGHPSSTTPNLDQLAAGGLRFTDFYVPVSLXTPSRAALLTG 61
Query: 118 KHPIHTGMQHNVLYGCERGGLPLSEKILPQYLKELGYRTRIVGKWHLGFYKK-EYTPTFR 176
+ P+ GM VL RGGLPL E + + L GY T + GKWHLG + + P +
Sbjct: 62 RLPVRMGMYPGVLVPSSRGGLPLEEVTVAEVLAARGYLTGMAGKWHLGVGPEGAFLPPHQ 121
Query: 177 GFESHLGYWTGH-----QDYFDHSAEEMKMWGLD-----------MRRDLEPAW--DLHG 218
GF LG H Q+ G D + + +P W L
Sbjct: 122 GFHRFLGIPYSHDQGPCQNLTCFPPATPCDGGCDQGLVPIPLLANLSVEAQPPWLPGLEA 181
Query: 219 KYSTDVFTAEAVDIIHN-HSTDEPLFLYLAHAATHSANPYEPLQAPDHYLNIHRHIEDFK 277
+Y A A D++ + D P FLY A TH + E
Sbjct: 182 RY-----MAFAHDLMADAQREDRPFFLYYASHHTHYPQ-----------FSGQSFAERSG 225
Query: 278 RSKFAAILHKLDESVGKVVEALEQRRMLSNSIIVFVSDXXXXXXXXXXXXXSNWPLRGVK 337
R F L +LD +VG ++ A+ +L ++++F +D S LR K
Sbjct: 226 RGPFGDSLMELDAAVGTLMTAIGDLGLLEETLVIFTADNGPETMRMSRGGCSGL-LRCGK 284
Query: 338 NTLWEGGVRGAGLIWSPLLESRGIVAEQYVHVSDWLPTLLSAANKSDIPN 387
T +EGGVR L + P + G+ E + D LPTL + A + +PN
Sbjct: 285 GTTYEGGVREPALAFWPGHIAPGVTHELASSL-DLLPTLAALAG-APLPN 332
>pdb|3ED4|A Chain A, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
pdb|3ED4|B Chain B, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
pdb|3ED4|C Chain C, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
pdb|3ED4|D Chain D, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
Length = 502
Score = 136 bits (343), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 109/389 (28%), Positives = 182/389 (46%), Gaps = 41/389 (10%)
Query: 53 LVASSGPPHIIFILADDLGWNDVGFHGLDQIPTPNIDALAYSGIILKNYYT-VQLCTPSR 111
L A + P+++ I+ADDLG+ D+ +G + TPNID LA G+ +YY L +PSR
Sbjct: 21 LAAEAKQPNLVIIMADDLGYGDLATYGHQIVKTPNIDRLAQEGVKFTDYYAPAPLSSPSR 80
Query: 112 SAIMTGKHPIHTGMQHNVLYGCERGGLPLSEKILPQYLKELGYRTRIVGKWHL---GFYK 168
+ ++TG+ P TG++ + G + L +E + LK GY T ++GK HL G
Sbjct: 81 AGLLTGRMPFRTGIRSWIPSGKDV-ALGRNELTIANLLKAQGYDTAMMGKLHLNAGGDRT 139
Query: 169 KEYTPTFRGFESHLGYWTGH-QDYFDHSAEEMKMWGL----DMRRDLEPAWDLHGKYSTD 223
+ GF+ L G D +A+E +G+ R+ +P K S +
Sbjct: 140 DQPQAQDMGFDYSLANTAGFVTDATLDNAKERPRYGMVYPTGWLRNGQPT-PRADKMSGE 198
Query: 224 VFTAEAVDIIHNHSTDEPLFLYLAHAATHSANPYEPLQAPDHYLNIH-RHIEDFKR---- 278
++E V+ + N +P FLY+A HS PL +P YL+++ +++ +++
Sbjct: 199 YVSSEVVNWLDNKKDSKPFFLYVAFTEVHS-----PLASPKKYLDMYSQYMSAYQKQHPD 253
Query: 279 --------------SKFAAILHKLDESVGKVVEALEQRRMLSNSIIVFVSDXXXXXXXXX 324
++ A + LD VGKV++ ++ N+I++F SD
Sbjct: 254 LFYGDWADKPWRGVGEYYANISYLDAQVGKVLDKIKAMGEEDNTIVIFTSDNGPVTREAR 313
Query: 325 XXXXSNWP-----LRGVKNTLWEGGVRGAGLIWSPLLESRGIVAEQYVHVSDWLPTLLSA 379
N LRG K+ LWEGG+R +I +G+V++ V+ DW+PTL
Sbjct: 314 KVYELNLAGETDGLRGRKDNLWEGGIRVPAIIKYGKHLPQGMVSDTPVYGLDWMPTLAKM 373
Query: 380 ANKSDIPNYVNSTVENIIPRYENSILRYE 408
N +P E+++P E L+ E
Sbjct: 374 MN-FKLPTDRTFDGESLVPVLEQKALKRE 401
>pdb|1HDH|A Chain A, Arylsulfatase From Pseudomonas Aeruginosa
pdb|1HDH|B Chain B, Arylsulfatase From Pseudomonas Aeruginosa
Length = 536
Score = 117 bits (293), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 110/423 (26%), Positives = 174/423 (41%), Gaps = 109/423 (25%)
Query: 60 PHIIFILADDLGWNDVGFHGLDQIPTPNIDALAYSGIILKNYYTVQLCTPSRSAIMTGK- 118
P+ + I+ADDLG++D+G G +I TPN+DALA +G+ L +++T +P+RS ++TG
Sbjct: 5 PNFLVIVADDLGFSDIGAFG-GEIATPNLDALAIAGLRLTDFHTASTXSPTRSMLLTGTD 63
Query: 119 -HPIHTGMQHNVLYGCERGGLP-----LSEKI--LPQYLKELGYRTRIVGKWHLGFYKKE 170
H G L E G P L+E++ LP+ L+E GY+T + GKWHLG K E
Sbjct: 64 HHIAGIGTMAEALT-PELEGKPGYEGHLNERVVALPELLREAGYQTLMAGKWHLGL-KPE 121
Query: 171 YTPTFRGFESHLGYWTGHQDY------FDHSAEEMKMWGLDMRRDLEPAWDL--HGKYST 222
TP RGFE G ++ +D S + + + E D G YS+
Sbjct: 122 QTPHARGFERSFSLLPGAANHYGFEPPYDESTPRILKGTPALYVEDERYLDTLPEGFYSS 181
Query: 223 DVFTAEAVDIIHNHSTDEPLFLYLAHAATHSANPYEPLQAPDHYLNIHR----------- 271
D F + + + P F YL +A P+ PLQAP + +R
Sbjct: 182 DAFGDKLLQYLKERDQSRPFFAYLPFSA-----PHWPLQAPREIVEKYRGRYDAGPEALR 236
Query: 272 ------------------------------HIEDFKRSK-------FAAILHKLDESVGK 294
+ED +R+K +AA++ ++D ++G+
Sbjct: 237 QERLARLKELGLVEADVEAHPVLALTREWEALEDEERAKSARAMEVYAAMVERMDWNIGR 296
Query: 295 VVEALEQRRMLSNSIIVFVSDXXXXXXXXXX----------------------------- 325
VV+ L ++ L N+ ++F+SD
Sbjct: 297 VVDYLRRQGELDNTFVLFMSDNGAEGALLEAFPKFGPDLLGFLDRHYDNSLENIGRANSY 356
Query: 326 -------XXXSNWPLRGVKNTLWEGGVRGAGLIWSPLLESRGIVAEQYVHVSDWLPTLLS 378
+ P R K +GG+R L+ P L +G ++ + V D PTLL
Sbjct: 357 VWYGPRWAQAATAPSRLYKAFTTQGGIRVPALVRYPRLSRQGAISHAFATVMDVTPTLLD 416
Query: 379 AAN 381
A
Sbjct: 417 LAG 419
>pdb|1P49|A Chain A, Structure Of Human Placental EstroneDHEA SULFATASE
Length = 562
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 102/388 (26%), Positives = 152/388 (39%), Gaps = 68/388 (17%)
Query: 60 PHIIFILADDLGWNDVGFHGLDQIPTPNIDALAYSGIILKNYYTVQ-LCTPSRSAIMTGK 118
P+II ++ADDLG D G +G I TPNID LA G+ L + L TPSR+A MTG+
Sbjct: 6 PNIILVMADDLGIGDPGCYGNKTIRTPNIDRLASGGVKLTQHLAASPLXTPSRAAFMTGR 65
Query: 119 HPIHTGMQH-----NVLYGCERGGLPLSEKILPQYLKELGYRTRIVGKWHLGFYKKEYT- 172
+P+ +GM L+ GGLP E + LK+ GY T ++GKWHLG T
Sbjct: 66 YPVRSGMASWSRTGVFLFTASSGGLPTDEITFAKLLKDQGYSTALIGKWHLGMSCHSKTD 125
Query: 173 ----PTFRGFESHLGYWTGHQDYFDHSAEEMKMWGLDMRRDLEPAWDLHGKYSTDVFTAE 228
P GF G + D E ++ +R + + G +
Sbjct: 126 FCHHPLHHGFNYFYG--ISLTNLRDCKPGEGSVFTTGFKRLVFLPLQIVGVTLLTLAALN 183
Query: 229 AVDIIH-------NHSTDEPLFLYLAHAATHSANP--------YEPLQAPDHYLN----- 268
+ ++H + L L L H P YE +Q P Y N
Sbjct: 184 CLGLLHVPLGVFFSLLFLAALILTLFLGFLHYFRPLNCFMMRNYEIIQQPMSYDNLTQRL 243
Query: 269 ----------------------IHRHIEDFKRSKFAA---------ILHKLDESVGKVVE 297
+H H F FA + ++D SVG+++
Sbjct: 244 TVEAAQFIQRNTETPFLLVLSYLHVHTALFSSKDFAGKSQHGVYGDAVEEMDWSVGQILN 303
Query: 298 ALEQRRMLSNSIIVFVSDXXXXXXXXXXXXX----SNWPLRGVKNTLWEGGVRGAGLIWS 353
L++ R+ ++++I F SD SN +G K WEGG+R G++
Sbjct: 304 LLDELRLANDTLIYFTSDQGAHVEEVSSKGEIHGGSNGIYKGGKANNWEGGIRVPGILRW 363
Query: 354 PLLESRGIVAEQYVHVSDWLPTLLSAAN 381
P + G ++ D PT+ A
Sbjct: 364 PRVIQAGQKIDEPTSNMDIFPTVAKLAG 391
>pdb|2QZU|A Chain A, Crystal Structure Of The Putative Sulfatase Yidj From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr123
Length = 491
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/299 (24%), Positives = 132/299 (44%), Gaps = 56/299 (18%)
Query: 60 PHIIFILADDLGWNDVGFHGLDQIPTPNIDALAYSGIILKNYYT-VQLCTPSRSAIMTGK 118
P+++FI AD + +G G + + TP++D LA GI N + + +P+R + TG
Sbjct: 28 PNLVFIXADQYRGDAIGCIGKEPVKTPHLDKLASEGINFTNAISSYPVSSPARGXLXTGX 87
Query: 119 HPIHTGMQHNVLYGCERGGLPLSE--KILPQYLKELGYRTRIVGKWHLGFYKKEYTPTF- 175
+PI + + N G+ LS+ + LK+ GY +GKWHL K Y T+
Sbjct: 88 YPIGSKVTGNCNSETAPYGVELSQNARCWSDVLKDQGYNXGYIGKWHLDAPYKPYVDTYN 147
Query: 176 ----------------RGFESHLGYWTGHQDYFDHSAEEMKMWGLDMRRDLEPAWDLHGK 219
GF+ + Y T +D+ + W RD ++ +
Sbjct: 148 NRGKVAWNEWCPPERRHGFDHWIAYGT-----YDYHLKPX-YWNTTAPRD---SFYYVNQ 198
Query: 220 YSTDVFTAEAVDIIHNHS-TDEPLFLYLAHAATHSANPYEPLQAPDHYLNIHRHIE---- 274
+ + ++A++ I+ +P L ++ H+ YE PD Y I++ ++
Sbjct: 199 WGPEYEASKAIEYINGQKDQKQPFALVVSXNPPHTG--YE--LVPDRYKEIYKDLDVEAL 254
Query: 275 ---------------DFKRSK---FAAILHKLDESVGKVVEALEQRRMLSNSIIVFVSD 315
D+ R+ + A + +DE+VG+++EAL+Q + N+I+VF SD
Sbjct: 255 CKGRPDIPAKGTEXGDYFRNNIRNYYACITGVDENVGRIIEALKQNNLFDNTIVVFTSD 313
>pdb|2VQR|A Chain A, Crystal Structure Of A Phosphonate Monoester Hydrolase
From Rhizobium Leguminosarum: A New Member Of The
Alkaline Phosphatase Superfamily
Length = 514
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/311 (19%), Positives = 118/311 (37%), Gaps = 89/311 (28%)
Query: 80 LDQIPTPNIDALAYSGIILKNYYT--VQLCTPSRSAIMTGKHPI-HTGMQHNVLYGCERG 136
+D + TPN+D L G+ +N+ T V C P+R++++TG + + H +Q+ V
Sbjct: 28 IDFLKTPNLDRLCREGVTFRNHVTTCVPXCGPARASLLTGLYLMNHRAVQNTV------- 80
Query: 137 GLPLSEKI--LPQYLKELGY----------------------RTRIVGKWHLGFYK-KEY 171
PL ++ L + L+ +GY R R++G GF+ +
Sbjct: 81 --PLDQRHLNLGKALRGVGYDPALIGYTTTVPDPRTTSPNDPRFRVLGDLMDGFHPVGAF 138
Query: 172 TPTFRGFESHLGYWTGHQDYFDHSAEEMKMWGLDMRRDLEPAWD----LHGKYSTDVFTA 227
P G+ W Q+ FD +W + + A D + ++S F
Sbjct: 139 EPNMEGYFG----WVA-QNGFDLPEHRPDIWLPEGEDAVAGATDRPSRIPKEFSDSTFFT 193
Query: 228 EAVDIIHNHSTDEPLFLYLAHAATH----SANPYEPLQAPD------------------- 264
E +P FL+L + H ++ PY + P+
Sbjct: 194 ERALTYLKGRDGKPFFLHLGYYRPHPPFVASAPYHAMYRPEDMPAPIRAANPDIEAAQHP 253
Query: 265 ---HYLNIHRHIEDFK-----------------RSKFAAILHKLDESVGKVVEALEQRRM 304
Y++ R F+ R+ + ++ ++D+ +G+V L++
Sbjct: 254 LMKFYVDSIRRGSFFQGAEGSGATLDEAELRQMRATYCGLITEVDDCLGRVFSYLDETGQ 313
Query: 305 LSNSIIVFVSD 315
+++I+F SD
Sbjct: 314 WDDTLIIFTSD 324
>pdb|3B5Q|A Chain A, Crystal Structure Of A Putative Sulfatase (Np_810509.1)
From Bacteroides Thetaiotaomicron Vpi-5482 At 2.40 A
Resolution
pdb|3B5Q|B Chain B, Crystal Structure Of A Putative Sulfatase (Np_810509.1)
From Bacteroides Thetaiotaomicron Vpi-5482 At 2.40 A
Resolution
Length = 482
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 60 PHIIFILADDLGWNDVGFHGLDQIPTPNIDALAYSGIILKNYYT-VQLCTPSRSAIMTGK 118
P+ + I D L VG +G Q T ID +A G+I N Y L PSR+A+ +G
Sbjct: 17 PNFLIIQCDHLTQRVVGAYGQTQGCTLPIDEVASRGVIFSNAYVGCPLSQPSRAALWSGX 76
Query: 119 HPIHTGMQHNVLYGCERGGLPLSEKILPQYLKELGYRTRIVGKWH-----LGFYKKE 170
P T ++ N LP + L E GY GK H GF KE
Sbjct: 77 XPHQTNVRSNSSEPVNT-RLPENVPTLGSLFSESGYEAVHFGKTHDXGSLRGFKHKE 132
>pdb|2W8S|A Chain A, Crystal Structure Of A Catalytically Promiscuous
Phosphonate Monoester Hydrolase From Burkholderia
Caryophylli
Length = 513
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 64/308 (20%), Positives = 122/308 (39%), Gaps = 89/308 (28%)
Query: 83 IPTPNIDALAYSGIILKNYYT--VQLCTPSRSAIMTGKHPI-HTGMQHNVLYGCERGGLP 139
+ TPN+D L G+ +N+ T V C P+R++++TG + + H +Q+ V P
Sbjct: 30 LKTPNLDRLCREGLTFRNHVTTCVPXCGPARASLLTGLYLMNHRAVQNTV---------P 80
Query: 140 LSEKI--LPQYLKELGYRTRIVGKWHLGFYKKEYT---PTFR-------GFESHLGYWTG 187
L ++ L + L+ +GY ++G + + P F GF S +
Sbjct: 81 LDQRHLNLGKALRAIGYDPALIGYTTTTPDPRTTSARDPRFTVLGDIMDGFRSVGAFEPN 140
Query: 188 HQDYFDHSAEEMKMWGLDMRRDLEPAWDLHGKYS-----------------TDVFTAEAV 230
+ YF A+ G ++ + E W G++S + FT A+
Sbjct: 141 MEGYFGWVAQN----GFELPENREDIWLPEGEHSVPGATDKPSRIPKEFSDSTFFTERAL 196
Query: 231 DIIHNHSTDEPLFLYLAHAATH----SANPYE----------PLQA--PD---------- 264
+ +P FL+L + H ++ PY P++A PD
Sbjct: 197 TYLKGRDG-KPFFLHLGYYRPHPPFVASAPYHAMYKAEDMPAPIRAENPDAEAAQHPLMK 255
Query: 265 HYLNIHRHIEDFK-----------------RSKFAAILHKLDESVGKVVEALEQRRMLSN 307
HY++ R F R+ + ++ ++D+ +G+V L++ +
Sbjct: 256 HYIDHIRRGSFFHGAEGSGATLDEGEIRQMRATYCGLITEIDDCLGRVFAYLDETGQWDD 315
Query: 308 SIIVFVSD 315
++I+F SD
Sbjct: 316 TLIIFTSD 323
>pdb|2W8S|B Chain B, Crystal Structure Of A Catalytically Promiscuous
Phosphonate Monoester Hydrolase From Burkholderia
Caryophylli
pdb|2W8S|C Chain C, Crystal Structure Of A Catalytically Promiscuous
Phosphonate Monoester Hydrolase From Burkholderia
Caryophylli
pdb|2W8S|D Chain D, Crystal Structure Of A Catalytically Promiscuous
Phosphonate Monoester Hydrolase From Burkholderia
Caryophylli
Length = 514
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 64/308 (20%), Positives = 122/308 (39%), Gaps = 89/308 (28%)
Query: 83 IPTPNIDALAYSGIILKNYYT--VQLCTPSRSAIMTGKHPI-HTGMQHNVLYGCERGGLP 139
+ TPN+D L G+ +N+ T V C P+R++++TG + + H +Q+ V P
Sbjct: 31 LKTPNLDRLCREGLTFRNHVTTCVPXCGPARASLLTGLYLMNHRAVQNTV---------P 81
Query: 140 LSEKI--LPQYLKELGYRTRIVGKWHLGFYKKEYT---PTFR-------GFESHLGYWTG 187
L ++ L + L+ +GY ++G + + P F GF S +
Sbjct: 82 LDQRHLNLGKALRAIGYDPALIGYTTTTPDPRTTSARDPRFTVLGDIMDGFRSVGAFEPN 141
Query: 188 HQDYFDHSAEEMKMWGLDMRRDLEPAWDLHGKYS-----------------TDVFTAEAV 230
+ YF A+ G ++ + E W G++S + FT A+
Sbjct: 142 MEGYFGWVAQN----GFELPENREDIWLPEGEHSVPGATDKPSRIPKEFSDSTFFTERAL 197
Query: 231 DIIHNHSTDEPLFLYLAHAATH----SANPYE----------PLQA--PD---------- 264
+ +P FL+L + H ++ PY P++A PD
Sbjct: 198 TYLKGRD-GKPFFLHLGYYRPHPPFVASAPYHAMYKAEDMPAPIRAENPDAEAAQHPLMK 256
Query: 265 HYLNIHRHIEDFK-----------------RSKFAAILHKLDESVGKVVEALEQRRMLSN 307
HY++ R F R+ + ++ ++D+ +G+V L++ +
Sbjct: 257 HYIDHIRRGSFFHGAEGSGATLDEGEIRQMRATYCGLITEIDDCLGRVFAYLDETGQWDD 316
Query: 308 SIIVFVSD 315
++I+F SD
Sbjct: 317 TLIIFTSD 324
>pdb|2GSN|A Chain A, Structure Of Xac Nucleotide
PyrophosphatasePHOSPHODIESTERASE
pdb|2GSN|B Chain B, Structure Of Xac Nucleotide
PyrophosphatasePHOSPHODIESTERASE
pdb|2GSO|A Chain A, Structure Of Xac Nucleotide
PyrophosphatasePHOSPHODIESTERASE IN COMPLEX WITH
VANADATE
pdb|2GSO|B Chain B, Structure Of Xac Nucleotide
PyrophosphatasePHOSPHODIESTERASE IN COMPLEX WITH
VANADATE
pdb|2GSU|A Chain A, Structure Of Xac Nucleotide
Pyrophosphatase/phosphodiesterase In Complex With Amp
pdb|2GSU|B Chain B, Structure Of Xac Nucleotide
Pyrophosphatase/phosphodiesterase In Complex With Amp
pdb|2RH6|A Chain A, Structure Of Xac Npp For Evaluation Of Refinement
Methodology
pdb|2RH6|B Chain B, Structure Of Xac Npp For Evaluation Of Refinement
Methodology
Length = 393
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 55 ASSGPPHIIFILADDLGWNDVGFHGLDQIPTPNIDALAYSGI----ILKNYYTVQLCTPS 110
AS+ PH + +++ D D+ LD+ TPN+ LA G+ + +Y + L P+
Sbjct: 1 ASASTPHALLLISIDGLRADM----LDRGITPNLSHLAREGVRARWMAPSYPS--LTFPN 54
Query: 111 RSAIMTGKHPIHTGMQHNVLYGCERGGLPLSEK 143
++TG P H G+ HN + GG LS+
Sbjct: 55 HYTLVTGLRPDHHGIVHNSMRDPTLGGFWLSKS 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,276,532
Number of Sequences: 62578
Number of extensions: 1241051
Number of successful extensions: 2579
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2484
Number of HSP's gapped (non-prelim): 72
length of query: 905
length of database: 14,973,337
effective HSP length: 108
effective length of query: 797
effective length of database: 8,214,913
effective search space: 6547285661
effective search space used: 6547285661
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)