RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1088
(905 letters)
>1fsu_A N-acetylgalactosamine-4-sulfatase; glycosaminoglycan degradation,
hydrolase, glycopr lysosome; HET: ALS NAG; 2.50A {Homo
sapiens} SCOP: c.76.1.2
Length = 492
Score = 468 bits (1205), Expect = e-156
Identities = 157/331 (47%), Positives = 216/331 (65%), Gaps = 16/331 (4%)
Query: 57 SGPPHIIFILADDLGWNDVGFHGLDQIPTPNIDALAYSGIILKNYYTVQLCTPSRSAIMT 116
S PPH++F+LADDLGWNDVGFHG +I TP++DALA G++L NYYT L TPSRS ++T
Sbjct: 1 SRPPHLVFLLADDLGWNDVGFHG-SRIRTPHLDALAAGGVLLDNYYTQPLXTPSRSQLLT 59
Query: 117 GKHPIHTGMQHNVLYGCERGGLPLSEKILPQYLKELGYRTRIVGKWHLGFYKKEYTPTFR 176
G++ I TG+QH +++ C+ +PL EK+LPQ LKE GY T +VGKWHLG Y+KE PT R
Sbjct: 60 GRYQIRTGLQHQIIWPCQPSCVPLDEKLLPQLLKEAGYTTHMVGKWHLGMYRKECLPTRR 119
Query: 177 GFESHLGYWTGHQDYFDH------SAEEMKMWGLDMRRDLEPAWDLHGKYSTDVFTAEAV 230
GF+++ GY G +DY+ H A + LD R E A YST++FT A+
Sbjct: 120 GFDTYFGYLLGSEDYYSHERCTLIDALNVTRCALDFRDGEEVATGYKNMYSTNIFTKRAI 179
Query: 231 DIIHNHSTDEPLFLYLAHAATHSANPYEPLQAPDHYLNIHRHIEDFKRSKFAAILHKLDE 290
+I NH ++PLFLYLA + H PLQ P+ YL + I+D R +A ++ +DE
Sbjct: 180 ALITNHPPEKPLFLYLALQSVHE-----PLQVPEEYLKPYDFIQDKNRHHYAGMVSLMDE 234
Query: 291 SVGKVVEALEQRRMLSNSIIVFVSDNGGAAAGFNLNAASNWPLRGVKNTLWEGGVRGAGL 350
+VG V AL+ + +N++ +F +DNGG L +NWPLRG K +LWEGGVRG G
Sbjct: 235 AVGNVTAALKSSGLWNNTVFIFSTDNGGQT----LAGGNNWPLRGRKWSLWEGGVRGVGF 290
Query: 351 IWSPLLESRGIVAEQYVHVSDWLPTLLSAAN 381
+ SPLL+ +G+ + +H+SDWLPTL+ A
Sbjct: 291 VASPLLKQKGVKNRELIHISDWLPTLVKLAR 321
Score = 69.4 bits (170), Expect = 2e-12
Identities = 27/124 (21%), Positives = 39/124 (31%), Gaps = 7/124 (5%)
Query: 574 EIDGIDVWSVLSRNEPSKRNTILHNIDDEWQISALTKGKWKLVKVVKVMRYQVDLTGGPD 633
+DG DVW +S PS R +LHNID + S+ +
Sbjct: 329 PLDGFDVWKTISEGSPSPRIELLHNIDPNFVDSSPCPRNSMAPAKDDSSLPEYSAFNTSV 388
Query: 634 QVYLSGLSDREWLALAMRKLRD----AASIQCGPVKEVPCEPQIAPCLFDIKNDPCEKNN 689
+ + W L S P LFDI DP E+++
Sbjct: 389 H---AAIRHGNWKLLTGYPGCGYWFPPPSQYNVSEIPSSDPPTKTLWLFDIDRDPEERHD 445
Query: 690 LADR 693
L+
Sbjct: 446 LSRE 449
Score = 55.1 bits (133), Expect = 6e-08
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 1 MQHNVLYGCERGGLPLSEKILPQYLKELGYRTRIM 35
+QH +++ C+ +PL EK+LPQ LKE GY T ++
Sbjct: 68 LQHQIIWPCQPSCVPLDEKLLPQLLKEAGYTTHMV 102
Score = 43.9 bits (104), Expect = 2e-04
Identities = 20/151 (13%), Positives = 31/151 (20%), Gaps = 59/151 (39%)
Query: 748 KYSNEEEGMRKLRDAASIQCGPVKEVPCEPQIAPCLFDIKNDPCEKNNLADRSEVQRINH 807
K G S P LFDI DP E+++L+
Sbjct: 398 KLLTGYPGCGYWFPPPSQYNVSEIPSSDPPTKTLWLFDIDRDPEERHDLSR--------- 448
Query: 808 YTTEVGYLDPKQRFNQIAYLDKEKKKKKKKKKKKKKKKKKKKKKKMMKKGYPDVLSQMEK 867
+ K++ +
Sbjct: 449 -------------------------------------EYPHIVTKLLSR----------- 460
Query: 868 ELANINRTAVAPINKPFDKGGDPKNFDHAWS 898
L ++ +V D DPK W
Sbjct: 461 -LQFYHKHSVPVYFPAQDPRCDPK-ATGVWG 489
>3ed4_A Arylsulfatase; structural genomics, PSI-2, protein structure INI
NEW YORK structural genomix research consortium,
NYSGXRC, transferase; 1.70A {Escherichia coli}
Length = 502
Score = 344 bits (884), Expect = e-109
Identities = 102/380 (26%), Positives = 167/380 (43%), Gaps = 40/380 (10%)
Query: 35 MAFAVLPLAFTLSMVFVDLVASSGPPHIIFILADDLGWNDVGFHGLDQIPTPNIDALAYS 94
+A + T + L A + P+++ I+ADDLG+ D+ +G + TPNID LA
Sbjct: 3 LASLIGLAVCTGNAFSPALAAEAKQPNLVIIMADDLGYGDLATYGHQIVKTPNIDRLAQE 62
Query: 95 GIILKNYYTVQ-LCTPSRSAIMTGKHPIHTGMQHNVLYGCERGGLPLSEKILPQYLKELG 153
G+ +YY L +PSR+ ++TG+ P TG++ + G + L +E + LK G
Sbjct: 63 GVKFTDYYAPAPLSSPSRAGLLTGRMPFRTGIRSWIPSG-KDVALGRNELTIANLLKAQG 121
Query: 154 YRTRIVGKWHLGF---YKKEYTPTFRGFESHLGYWTGHQDYFDHSAEE-----MKMWGLD 205
Y T ++GK HL + GF+ L G + ++
Sbjct: 122 YDTAMMGKLHLNAGGDRTDQPQAQDMGFDYSLANTAGFVTDATLDNAKERPRYGMVYPTG 181
Query: 206 MRRDLEPAWDLHGKYSTDVFTAEAVDIIHNHSTDEPLFLYLAHAATHSANPYEPLQAPDH 265
R+ +P K S + ++E V+ + N +P FLY+A HS PL +P
Sbjct: 182 WLRNGQPTPR-ADKMSGEYVSSEVVNWLDNKKDSKPFFLYVAFTEVHS-----PLASPKK 235
Query: 266 YLNIHRHIEDFKRSK-------------------FAAILHKLDESVGKVVEALEQRRMLS 306
YL+++ + + + A + LD VGKV++ ++
Sbjct: 236 YLDMYSQYMSAYQKQHPDLFYGDWADKPWRGVGEYYANISYLDAQVGKVLDKIKAMGEED 295
Query: 307 NSIIVFVSDNGGAAAG-----FNLNAASNWPLRGVKNTLWEGGVRGAGLIWSPLLESRGI 361
N+I++F SDNG A LRG K+ LWEGG+R +I +G+
Sbjct: 296 NTIVIFTSDNGPVTREARKVYELNLAGETDGLRGRKDNLWEGGIRVPAIIKYGKHLPQGM 355
Query: 362 VAEQYVHVSDWLPTLLSAAN 381
V++ V+ DW+PTL N
Sbjct: 356 VSDTPVYGLDWMPTLAKMMN 375
Score = 45.4 bits (108), Expect = 7e-05
Identities = 19/125 (15%), Positives = 34/125 (27%), Gaps = 56/125 (44%)
Query: 574 EIDGIDVWSVLSRNEPSKRNTILHNIDDEWQI-----SALTKGKWKLVKVVKVMRYQVDL 628
DG + VL + + ++ ID +Q A+ G WK++ +D
Sbjct: 383 TFDGESLVPVLEQKALKREKPLIFGIDMPFQDDPTDEWAIRDGDWKMI---------IDR 433
Query: 629 TGGPDQVYLSGLSDREWLALAMRKLRDAASIQCGPVKEVPCEPQIAPCLFDIKNDPCEKN 688
P L+++K+D E
Sbjct: 434 NNKPKY------------------------------------------LYNLKSDRYETL 451
Query: 689 NLADR 693
NL +
Sbjct: 452 NLIGK 456
Score = 39.2 bits (92), Expect = 0.006
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 509 EIDGIDVWSVLSRNEPSKRNTILHNIDDEWQI-----SALTRGKWKLVK 552
DG + VL + + ++ ID +Q A+ G WK++
Sbjct: 383 TFDGESLVPVLEQKALKREKPLIFGIDMPFQDDPTDEWAIRDGDWKMII 431
Score = 37.7 bits (88), Expect = 0.018
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 3 HNVLYGCERGGLPLSEKILPQYLKELGYRT 32
+ + + L +E + LK GY T
Sbjct: 95 RSWIPSGKDVALGRNELTIANLLKAQGYDT 124
Score = 33.5 bits (77), Expect = 0.31
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 783 LFDIKNDPCEKNNLADR 799
L+++K+D E NL +
Sbjct: 440 LYNLKSDRYETLNLIGK 456
>1auk_A Arylsulfatase A; cerebroside-3-sulfate hydrolysis, lysosomal
enzyme, hydrolas; HET: NDG NAG; 2.10A {Homo sapiens}
SCOP: c.76.1.2 PDB: 1n2k_A* 1n2l_A* 1e1z_P* 1e2s_P*
1e3c_P* 1e33_P*
Length = 489
Score = 312 bits (801), Expect = 4e-97
Identities = 102/339 (30%), Positives = 150/339 (44%), Gaps = 29/339 (8%)
Query: 59 PPHIIFILADDLGWNDVGFHGLDQIPTPNIDALAYSGIILKNYYTVQ-LCTPSRSAIMTG 117
PP+I+ I ADDLG+ D+G +G TPN+D LA G+ ++Y L TPSR+A++TG
Sbjct: 2 PPNIVLIFADDLGYGDLGCYGHPSSTTPNLDQLAAGGLRFTDFYVPVSLXTPSRAALLTG 61
Query: 118 KHPIHTGMQHNVLYGCERGGLPLSEKILPQYLKELGYRTRIVGKWHLGF-YKKEYTPTFR 176
+ P+ GM VL RGGLPL E + + L GY T + GKWHLG + + P +
Sbjct: 62 RLPVRMGMYPGVLVPSSRGGLPLEEVTVAEVLAARGYLTGMAGKWHLGVGPEGAFLPPHQ 121
Query: 177 GFESHLGYWTGHQDYFDH------------SAEEMKMWGLDMRRDLEP-AWDLHGKYSTD 223
GF LG H + + + + +L A
Sbjct: 122 GFHRFLGIPYSHDQGPCQNLTCFPPATPCDGGCDQGLVPIPLLANLSVEAQPPWLPGLEA 181
Query: 224 VFTAEAVDIIH-NHSTDEPLFLYLAHAATHSANPYEPLQAPDHYLNIHRHIEDFKRSKFA 282
+ A A D++ D P FLY A TH P + + R F
Sbjct: 182 RYMAFAHDLMADAQRQDRPFFLYYASHHTHY-----PQFSGQSFAERS------GRGPFG 230
Query: 283 AILHKLDESVGKVVEALEQRRMLSNSIIVFVSDNGGAAAGFNLNAASNWPLRGVKNTLWE 342
L +LD +VG ++ A+ +L ++++F +DNG + + LR K T +E
Sbjct: 231 DSLMELDAAVGTLMTAIGDLGLLEETLVIFTADNGPETMRMS-RGGCSGLLRCGKGTTYE 289
Query: 343 GGVRGAGLIWSPLLESRGIVAEQYVHVSDWLPTLLSAAN 381
GGVR L + P + G+ E D LPTL + A
Sbjct: 290 GGVREPALAFWPGHIAPGVTHE-LASSLDLLPTLAALAG 327
Score = 53.5 bits (129), Expect = 2e-07
Identities = 23/131 (17%), Positives = 35/131 (26%), Gaps = 33/131 (25%)
Query: 571 YQNEIDGIDVWSVLSRNEPSKRNTILHNIDDEWQ---ISALTKGKWKLVKVVKVMRYQVD 627
+DG D+ +L S R ++ + + A+ GK+K + D
Sbjct: 331 PNVTLDGFDLSPLLLGTGKSPRQSLFFYPSYPDEVRGVFAVRTGKYKAHFFTQ-GSAHSD 389
Query: 628 LTGGPDQVYLSGLSDREWLALAMRKLRDAASIQCGPVKEVPCEPQIAPCLFDIKNDPCEK 687
T P EP P L+D+ DP E
Sbjct: 390 TTADPA--------------------------CHASSSLTAHEP---PLLYDLSKDPGEN 420
Query: 688 NNLADRSEDQR 698
NL
Sbjct: 421 YNLLGGVAGAT 431
Score = 41.5 bits (98), Expect = 0.001
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 1 MQHNVLYGCERGGLPLSEKILPQYLKELGYRT 32
M VL RGGLPL E + + L GY T
Sbjct: 69 MYPGVLVPSSRGGLPLEEVTVAEVLAARGYLT 100
Score = 41.5 bits (98), Expect = 0.001
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 506 YQNEIDGIDVWSVLSRNEPSKRNTILHNIDDEWQ---ISALTRGKWKLV 551
+DG D+ +L S R ++ + + A+ GK+K
Sbjct: 331 PNVTLDGFDLSPLLLGTGKSPRQSLFFYPSYPDEVRGVFAVRTGKYKAH 379
Score = 31.1 bits (71), Expect = 1.7
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 781 PCLFDIKNDPCEKNNLAD 798
P L+D+ DP E NL
Sbjct: 408 PLLYDLSKDPGENYNLLG 425
>2qzu_A Putative sulfatase YIDJ; Q64XZ4_bacfr, arylsulfatase, BFR123, NESG,
structural genomics, PSI-2, protein structure
initiative; 1.70A {Bacteroides fragilis}
Length = 491
Score = 265 bits (680), Expect = 1e-79
Identities = 89/401 (22%), Positives = 157/401 (39%), Gaps = 68/401 (16%)
Query: 33 RIMAFAVLPLAFTLSMVFVDLVASSGPPHIIFILADDLGWNDVGFHGLDQIPTPNIDALA 92
I+ A+L + + + P+++FI+AD + +G G + + TP++D LA
Sbjct: 3 NIIPQALLTMPILSTGLQAQ--EKQPTPNLVFIMADQYRGDAIGCIGKEPVKTPHLDKLA 60
Query: 93 YSGIILKNYYTVQ-LCTPSRSAIMTGKHPIHTGMQHNVLYGCERGG--LPLSEKILPQYL 149
GI N + + +P+R +MTG +PI + + N G L + + L
Sbjct: 61 SEGINFTNAISSYPVSSPARGMLMTGMYPIGSKVTGNCNSETAPYGVELSQNARCWSDVL 120
Query: 150 KELGYRTRIVGKWHLGFYKKEYTPTF-----------------RGFESHLGYWTGHQDYF 192
K+ GY +GKWHL K Y T+ GF+ + Y G DY
Sbjct: 121 KDQGYNMGYIGKWHLDAPYKPYVDTYNNRGKVAWNEWCPPERRHGFDHWIAY--GTYDYH 178
Query: 193 DHSAEEMKMWGLDMRRDLEPAWDLHGKYSTDVFTAEAVDIIHNHS-TDEPLFLYLAHAAT 251
W RD ++ ++ + ++A++ I+ +P L ++
Sbjct: 179 LKP----MYWNTTAPRD---SFYYVNQWGPEYEASKAIEYINGQKDQKQPFALVVSMNPP 231
Query: 252 HSANPYEPLQAPDHYLNIHRHIEDFK----------------------RSKFAAILHKLD 289
H+ YE PD Y I++ ++ + A + +D
Sbjct: 232 HT--GYEL--VPDRYKEIYKDLDVEALCKGRPDIPAKGTEMGDYFRNNIRNYYACITGVD 287
Query: 290 ESVGKVVEALEQRRMLSNSIIVFVSDNGGAAAGFNLNAASNWPLRGVKNTLWEGGVRGAG 349
E+VG+++EAL+Q + N+I+VF SD+G K+ +E +R
Sbjct: 288 ENVGRIIEALKQNNLFDNTIVVFTSDHGI---------CMGAHENAGKDIFYEESMRIPM 338
Query: 350 LIWSPLLESRGIVAEQYVHVSDWLPTLLSAAN-KSDIPNYV 389
++ P + +D PTLLS +IP V
Sbjct: 339 ILSWPDQIKPRKSDPLMIAFADLYPTLLSMMGFSKEIPETV 379
Score = 36.5 bits (85), Expect = 0.042
Identities = 14/124 (11%), Positives = 24/124 (19%), Gaps = 52/124 (41%)
Query: 573 NEIDGIDVWSVLSRNEPSKRNTIL----HNIDDEWQISALTKGKWKLVKVVKVMRYQVDL 628
+ D+ + + + K + L ++ + D
Sbjct: 377 ETVQTFDLSNEVLTGKNKKDLVQPYYFVKFDNHATGYRGLRTDRYTYA------VHATDG 430
Query: 629 TGGPDQVYLSGLSDREWLALAMRKLRDAASIQCGPVKEVPCEPQIAPCLFDIKNDPCEKN 688
LFD NDP E N
Sbjct: 431 KIDNVI------------------------------------------LFDRTNDPHEMN 448
Query: 689 NLAD 692
N+A
Sbjct: 449 NIAS 452
Score = 33.4 bits (77), Expect = 0.31
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 783 LFDIKNDPCEKNNLAD 798
LFD NDP E NN+A
Sbjct: 437 LFDRTNDPHEMNNIAS 452
Score = 31.9 bits (73), Expect = 1.1
Identities = 6/67 (8%), Positives = 17/67 (25%), Gaps = 6/67 (8%)
Query: 508 NEIDGIDVWSVLSRNEPSKRNTIL----HNIDDEWQISALTRGKWKLVKENSINGNGTSE 563
+ D+ + + + K + L ++ +
Sbjct: 377 ETVQTFDLSNEVLTGKNKKDLVQPYYFVKFDNHATGYRGLRTDRYTYAVHATDGKIDNVI 436
Query: 564 --NRSND 568
+R+ND
Sbjct: 437 LFDRTND 443
Score = 31.5 bits (72), Expect = 1.2
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 13 GLPLSEKILPQYLKELGYRT 32
L + + LK+ GY
Sbjct: 108 ELSQNARCWSDVLKDQGYNM 127
>1hdh_A Arylsulfatase; hydrolase, formylglycine hydrate; 1.3A {Pseudomonas
aeruginosa} SCOP: c.76.1.2
Length = 536
Score = 242 bits (618), Expect = 2e-70
Identities = 99/430 (23%), Positives = 161/430 (37%), Gaps = 99/430 (23%)
Query: 57 SGPPHIIFILADDLGWNDVGFHGLDQIPTPNIDALAYSGIILKNYYTVQLCTPSRSAIMT 116
S P+ + I+ADDLG++D+G G +I TPN+DALA +G+ L +++T +P+RS ++T
Sbjct: 2 SKRPNFLVIVADDLGFSDIGAFG-GEIATPNLDALAIAGLRLTDFHTASTXSPTRSMLLT 60
Query: 117 GKHPIHTGMQHNVLYGCE--------RGGLPLSEKILPQYLKELGYRTRIVGKWHLGFYK 168
G G+ G L LP+ L+E GY+T + GKWHLG K
Sbjct: 61 GTDHHIAGIGTMAEALTPELEGKPGYEGHLNERVVALPELLREAGYQTLMAGKWHLGL-K 119
Query: 169 KEYTPTFRGFESHLGYWTGHQDYFDHSAEEMKMWGLDMRR--------DLEPAWDLHGKY 220
E TP RGFE G +++ + ++ + G Y
Sbjct: 120 PEQTPHARGFERSFSLLPGAANHYGFEPPYDESTPRILKGTPALYVEDERYLDTLPEGFY 179
Query: 221 STDVFTAEAVDIIHNHSTDEPLFLYLAHAATHSANPYEPLQAPDHYLNIHRHIEDFKRSK 280
S+D F + + + P F YL +A H P + + Y + + R +
Sbjct: 180 SSDAFGDKLLQYLKERDQSRPFFAYLPFSAPHWPLQA-PREIVEKYRGRYDAGPEALRQE 238
Query: 281 --------------------------------------------FAAILHKLDESVGKVV 296
+AA++ ++D ++G+VV
Sbjct: 239 RLARLKELGLVEADVEAHPVLALTREWEALEDEERAKSARAMEVYAAMVERMDWNIGRVV 298
Query: 297 EALEQRRMLSNSIIVFVSDNGGAAAGFNLNA----------------------------- 327
+ L ++ L N+ ++F+SDNG A
Sbjct: 299 DYLRRQGELDNTFVLFMSDNGAEGALLEAFPKFGPDLLGFLDRHYDNSLENIGRANSYVW 358
Query: 328 -------ASNWPLRGVKNTLWEGGVRGAGLIWSPLLESRGIVAEQYVHVSDWLPTLLSAA 380
A+ P R K +GG+R L+ P L +G ++ + V D PTLL A
Sbjct: 359 YGPRWAQAATAPSRLYKAFTTQGGIRVPALVRYPRLSRQGAISHAFATVMDVTPTLLDLA 418
Query: 381 NKSDIPNYVN 390
Sbjct: 419 GVRHPGKRWR 428
Score = 34.0 bits (78), Expect = 0.25
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
Query: 783 LFDIKNDPCEKNNLADR-----SEVQRI-NHYTTEVGYLDPKQRF 821
L+D+ DP E ++LAD +E+ Y +E G ++ F
Sbjct: 489 LYDLARDPGEIHDLADSQPGKLAELIEHWKRYVSETGVVEGASPF 533
Score = 32.1 bits (73), Expect = 0.83
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 677 LFDIKNDPCEKNNLAD 692
L+D+ DP E ++LAD
Sbjct: 489 LYDLARDPGEIHDLAD 504
Score = 29.0 bits (65), Expect = 8.1
Identities = 12/73 (16%), Positives = 24/73 (32%), Gaps = 2/73 (2%)
Query: 503 DNSYQNEIDGIDVWSVLSRNEPSKRNTILHNIDDEWQISALTRGKWKLVKENSINGNGTS 562
E G LS + + + + + A+ +G WK V + G T
Sbjct: 428 RGREIAEPRGRSWLGWLSGETEAAHDENTVTGWELFGMRAIRQGDWKAVYLPAPVGPATW 487
Query: 563 E--NRSNDNSYQN 573
+ + + D +
Sbjct: 488 QLYDLARDPGEIH 500
>1p49_A Steryl-sulfatase; steroid biosynthesis, steroid sulfatase, estrone
sulfate, dehydroepiandrosterone sulfate, human placental
enzyme; HET: ALS BOG NAG; 2.60A {Homo sapiens} SCOP:
c.76.1.2
Length = 562
Score = 208 bits (530), Expect = 4e-58
Identities = 91/391 (23%), Positives = 149/391 (38%), Gaps = 66/391 (16%)
Query: 56 SSGPPHIIFILADDLGWNDVGFHGLDQIPTPNIDALAYSGIILKNYYTVQLC-TPSRSAI 114
++ P+II ++ADDLG D G +G I TPNID LA G+ L + TPSR+A
Sbjct: 2 AASRPNIILVMADDLGIGDPGCYGNKTIRTPNIDRLASGGVKLTQHLAASPLXTPSRAAF 61
Query: 115 MTGKHPIHTGMQHN-----VLYGCERGGLPLSEKILPQYLKELGYRTRIVGKWHLGFYKK 169
MTG++P+ +GM L+ GGLP E + LK+ GY T ++GKWHLG
Sbjct: 62 MTGRYPVRSGMASWSRTGVFLFTASSGGLPTDEITFAKLLKDQGYSTALIGKWHLGMSCH 121
Query: 170 -----EYTPTFRGFESHLG--------YWTGHQDYFDHSAEEMKMW-------------G 203
+ P GF G G F + +
Sbjct: 122 SKTDFCHHPLHHGFNYFYGISLTNLRDCKPGEGSVFTTGFKRLVFLPLQIVGVTLLTLAA 181
Query: 204 LDMRRDLEPAWDL--HGKYSTDVFTAEAVDIIHNHSTDEPLFLYLAHAATHSANPYEPL- 260
L+ L + + + + +H F+ + Y+ L
Sbjct: 182 LNCLGLLHVPLGVFFSLLFLAALILTLFLGFLHYF-RPLNCFMMRNYEIIQQPMSYDNLT 240
Query: 261 ----------------QAPDHYLNIHR-HIEDF---------KRSKFAAILHKLDESVGK 294
L+ H F + + + ++D SVG+
Sbjct: 241 QRLTVEAAQFIQRNTETPFLLVLSYLHVHTALFSSKDFAGKSQHGVYGDAVEEMDWSVGQ 300
Query: 295 VVEALEQRRMLSNSIIVFVSDNGG----AAAGFNLNAASNWPLRGVKNTLWEGGVRGAGL 350
++ L++ R+ ++++I F SD G ++ ++ SN +G K WEGG+R G+
Sbjct: 301 ILNLLDELRLANDTLIYFTSDQGAHVEEVSSKGEIHGGSNGIYKGGKANNWEGGIRVPGI 360
Query: 351 IWSPLLESRGIVAEQYVHVSDWLPTLLSAAN 381
+ P + G ++ D PT+ A
Sbjct: 361 LRWPRVIQAGQKIDEPTSNMDIFPTVAKLAG 391
Score = 43.2 bits (101), Expect = 3e-04
Identities = 23/124 (18%), Positives = 37/124 (29%), Gaps = 23/124 (18%)
Query: 575 IDGIDVWSVLS-RNEPSKRNTILHNIDDEWQISALTKGKWKLVKVVKVMRYQVDLTGGPD 633
IDG D+ +L +++ S + H + A+ + K + +
Sbjct: 400 IDGRDLMPLLEGKSQRSDHEFLFHYCNAYLN--AVRWHPQNSTSIWKAFFFTPNFNPVG- 456
Query: 634 QVYLSGLSDREWLALAMRKLRDAASIQCGPVKEVPCEPQIAPCLFDIKNDPCEKNNLADR 693
A+ C P LFDI DP E+N L
Sbjct: 457 ------------------SNGCFATHVCFCFGS-YVTHHDPPLLFDISKDPRERNPLTPA 497
Query: 694 SEDQ 697
SE +
Sbjct: 498 SEPR 501
Score = 36.2 bits (83), Expect = 0.054
Identities = 16/70 (22%), Positives = 21/70 (30%), Gaps = 3/70 (4%)
Query: 732 KKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQCGPVKEVPCEPQIAPCLFDIKNDPC 791
+ + K + G C +P P LFDI DP
Sbjct: 433 RWHPQNSTSIWKAFFFTPNFNPVGSNGCFATHVCFCFGSYVTHHDP---PLLFDISKDPR 489
Query: 792 EKNNLADRSE 801
E+N L SE
Sbjct: 490 ERNPLTPASE 499
>3b5q_A Putative sulfatase YIDJ; NP_810509.1, structural genomics, joint
center for structural genomics, JCSG; HET: EPE; 2.40A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 482
Score = 194 bits (495), Expect = 5e-54
Identities = 69/379 (18%), Positives = 115/379 (30%), Gaps = 83/379 (21%)
Query: 55 ASSGPPHIIFILADDLGWNDVGFHGLDQIPTPNIDALAYSGIILKNYYTVQ-LCTPSRSA 113
+ P+ + I D L VG +G Q T ID +A G+I N Y L PSR+A
Sbjct: 12 QAQEKPNFLIIQCDHLTQRVVGAYGQTQGCTLPIDEVASRGVIFSNAYVGCPLSQPSRAA 71
Query: 114 IMTGKHPIHTGMQHNVLYGCERGGLPLSEKILPQYLKELGYRTRIVGKWHLGFYKKEYTP 173
+ +G P T ++ N LP + L E GY GK H
Sbjct: 72 LWSGMMPHQTNVRSNSSEP-VNTRLPENVPTLGSLFSESGYEAVHFGKTHDM-------G 123
Query: 174 TFRGFESHLGYWTGHQDYFDHSAEEMKMWGLDMRRDLEPAWDLHGK-YSTDVFTAEAVDI 232
+ RGF + F P + ++ + +AV
Sbjct: 124 SLRGF----KHKEPVAKPFTD-----------------PEFPVNNDSFLDVGTCEDAVAY 162
Query: 233 IHNHSTDEPLFLYLAHAATHSAN----------PYEPLQAPDHYLNIHRHIEDFK----- 277
+ N EP H+ P+ P L + +ED+
Sbjct: 163 LSNPP-KEPFICIADFQNPHNICGFIGENAGVHTDRPISGPLPELPDNFDVEDWSNIPTP 221
Query: 278 -------------------------RSKFAAILHKLDESVGKVVEALEQRRMLSNSIIVF 312
+ F + + V V++AL N+I+V
Sbjct: 222 VQYICCSHRRMTQAAHWNEENYRHYIAAFQHYTKMVSKQVDSVLKALYSTPAGRNTIVVI 281
Query: 313 VSDNGGAAAGFNLNAASNWPLRGVKNTLWEGGVRGAGLIWSPLLESRGIVAEQYVHVS-- 370
++D+G A + + ++ + P ++ + + +
Sbjct: 282 MADHGDGMASHR--------MVTKHISFYDEMTNVPFIFAGPGIKQQKKPVDHLLTQPTL 333
Query: 371 DWLPTLLSAANKSDIPNYV 389
D LPTL A +P
Sbjct: 334 DLLPTLCDLAGI-AVPAEK 351
Score = 39.2 bits (92), Expect = 0.006
Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 8/75 (10%)
Query: 677 LFDIKNDPCEKNNLADRSE--------DQRINHYTTEVGRFNQIAYPDKEEEEEKKKKKK 728
L+D+K DP E+ NLA + ++ Y T + D +
Sbjct: 408 LYDMKKDPGERKNLAKDPKYSKILAEHRALLDDYITRSKDDYRSLKVDADPRCRNHTPGY 467
Query: 729 KKKKKKKKKKKKKKK 743
+ ++ K+K
Sbjct: 468 PSHEGPGAREILKRK 482
Score = 37.7 bits (88), Expect = 0.019
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 16/75 (21%)
Query: 783 LFDIKNDPCEKNNLADRSEVQRI----------------NHYTTEVGYLDPKQRFNQIAY 826
L+D+K DP E+ NLA + +I + Y + DP+ R + Y
Sbjct: 408 LYDMKKDPGERKNLAKDPKYSKILAEHRALLDDYITRSKDDYRSLKVDADPRCRNHTPGY 467
Query: 827 LDKEKKKKKKKKKKK 841
E ++ K+K
Sbjct: 468 PSHEGPGAREILKRK 482
>2vqr_A Putative sulfatase; phosphonate monoester hydrolase, hydrolase,
plasmid, formylglycine, phosphodiesterase; 1.42A
{Rhizobium leguminosarum BV} PDB: 2w8s_A
Length = 543
Score = 167 bits (425), Expect = 3e-44
Identities = 65/416 (15%), Positives = 124/416 (29%), Gaps = 106/416 (25%)
Query: 55 ASSGPPHIIFILADDLGWNDVGFHG-----LDQIPTPNIDALAYSGIILKNYYTVQ-LCT 108
+S +++ I+ D + V +D + TPN+D L G+ +N+ T
Sbjct: 28 SSMRKKNVLLIVVDQWRADFVPHVLRADGKIDFLKTPNLDRLCREGVTFRNHVTTCVPXG 87
Query: 109 PSRSAIMTGKHPIHTGMQHNVLYGCERGGLPLSEKILPQYLKELGYRTRIVGKWHLG--- 165
P+R++++TG + ++ N L L + L+ +GY ++G
Sbjct: 88 PARASLLTGLYLMNHRAVQN------TVPLDQRHLNLGKALRGVGYDPALIGYTTTVPDP 141
Query: 166 -------FYKKEYTPTFRGFESHLGYWTGHQDYFDHSA-------EEMKMWGLDMRRDLE 211
+ GF + + YF A E L D
Sbjct: 142 RTTSPNDPRFRVLGDLMDGFHPVGAFEPNMEGYFGWVAQNGFDLPEHRPDIWLPEGEDAV 201
Query: 212 PAWDLHGK------YSTDVFTAEAVDIIHNHSTDEPLFLYLAHAATHSANPYEPLQAPDH 265
+ FT A+ + +P FL+L + H P A
Sbjct: 202 AGATDRPSRIPKEFSDSTFFTERALTYLKGRD-GKPFFLHLGYYRPHP-----PFVASAP 255
Query: 266 YLNIHRHI----------------------------------------------EDFKRS 279
Y ++R + ++
Sbjct: 256 YHAMYRPEDMPAPIRAANPDIEAAQHPLMKFYVDSIRRGSFFQGAEGSGATLDEAELRQM 315
Query: 280 K---FAAILHKLDESVGKVVEALEQRRMLSNSIIVFVSDNGGAAAGFNLNAASNWPLRGV 336
+ I +D+ +G+V L++ +++I+F SD+ G L +
Sbjct: 316 RATYCGLITE-VDDCLGRVFSYLDETGQWDDTLIIFTSDH-----GEQLGD------HHL 363
Query: 337 --KNTLWEGGVRGAGLIWSP-LLESRGIVAEQYVHVSDWLPTLLSAANKSDIPNYV 389
K + R +I G + + D +PT+L IP+
Sbjct: 364 LGKIGYNDPSFRIPLVIKDAGENARAGAIESGFTESIDVMPTILDWLG-GKIPHAC 418
Score = 33.6 bits (77), Expect = 0.30
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 783 LFDIKNDPCEKNNLADRSEVQRI 805
FD+++DP E NLAD +
Sbjct: 486 FFDLRHDPNEFTNLADDPAYAAL 508
Score = 33.6 bits (77), Expect = 0.33
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 677 LFDIKNDPCEKNNLADRSE 695
FD+++DP E NLAD
Sbjct: 486 FFDLRHDPNEFTNLADDPA 504
>2w8d_A Processed glycerol phosphate lipoteichoic acid SY; transferase,
phosphatase, cell membrane, transmembrane, LTA,
membrane, secreted, cell WALL; HET: TPO PG4; 2.35A
{Bacillus subtilis}
Length = 436
Score = 80.3 bits (198), Expect = 5e-16
Identities = 60/401 (14%), Positives = 127/401 (31%), Gaps = 60/401 (14%)
Query: 59 PPHIIFILADDLGWNDVGFHGLDQIPTPNIDALAYS--GIILKNYYTVQLCTPSRSAIMT 116
++I++ + L + + + TP ++ LA+ N++
Sbjct: 31 GKNVIYVSLESLQSFIIDYKIDGKEVTPFLNKLAHDNETFYFDNFF---------HQTGQ 81
Query: 117 GKHPIHTGMQHNVLYGCERGGLPLSEKI-----LPQYLKELGYRTRIVGKWHLGFYKKEY 171
GK M N LY +G + +++ +P LK Y + F+
Sbjct: 82 GKTSDAEFMMENSLYPLAQGSVFVNKAQNTLQSVPAILKSKNYTSATFHGNTQTFWN--- 138
Query: 172 TPTFRGFESHLGYWTGH-QDYFDHSAEEMKMWGLDMRRDLEPAWDLHGKYSTDVFTAEAV 230
G Y+D + E K +G+ D F E++
Sbjct: 139 ---RNEMYKAEGIDKFFDSAYYDMNEENTKNYGM---------KD-------KPFFKESM 179
Query: 231 DIIHNHSTDEPLFLYLAHAATHSANPYEPLQAPDHYLNIHRH-IEDFKRSKFAAILHKLD 289
++ + +P + + H P+ + + D + H LD
Sbjct: 180 PLLES--LPQPFYTKFITLSNHF--PFG---MDEGDTDFPAGDFGDSVVDNYFQSAHYLD 232
Query: 290 ESVGKVVEALEQRRMLSNSIIVFVSDNGGAAAGFNLNAASNWPLRGVKNTLWEGGVRGAG 349
+S+ + L++ + SIIV D+ G + N A + + R
Sbjct: 233 QSIEQFFNDLKKDGLYDKSIIVMYGDHYGISENHNKAMAKVLGKDEITDYDNAQLQRVPL 292
Query: 350 LIWSPLLESRGIVAEQYVHVSDWLPTLLSAANKSDIPNYV-------NSTVENIIPRYEN 402
I + ++ + +Y D PT+L D +Y+ + +IP
Sbjct: 293 FIHAAGVKGEKV--HKYAGDVDVAPTILHLLGV-DTKDYLMSGSDILSKEHREVIPFRNG 349
Query: 403 SILRYENGTHEYNSPRIENSNTRYENGTHEYNPKYENRYEN 443
+ + + S + ++ T E E + ++ +
Sbjct: 350 D---FISPKYTKISGKYYDTKTGKELDESEVDKSEDSLVKK 387
>3lxq_A Uncharacterized protein VP1736; alkaline, phosphatase, MDOB,
sulfatase, PSI, MCSG, structural genomics; 1.95A {Vibrio
parahaemolyticus}
Length = 450
Score = 71.0 bits (174), Expect = 5e-13
Identities = 65/393 (16%), Positives = 122/393 (31%), Gaps = 74/393 (18%)
Query: 59 PPHIIFILADDLGWNDVGFHGLDQIPTPNIDALAYSGIILKNYY-TVQLCTPSRSAIMTG 117
+++ +L + LG VG G TPN+D L G Y T A+ TG
Sbjct: 85 RKNLVILLQESLGAQFVGSLG-GLPLTPNLDELMQEGWQFTQMYATGTRSVRGIEAVTTG 143
Query: 118 KHPIHTGMQHNVLYGCERGGLPLSEKILPQYLKELGYRTRIVGKWHLGFYKKEYTPTFRG 177
P L + G + LKE GY T+ + F +
Sbjct: 144 -FPPSPSRAVVKLSKSQTG-----FFTIADLLKEQGYHTQFIYGGEANFDN------MKT 191
Query: 178 FESHLGYWTGHQDYFD----HSAEEMKMWGLDMRRDLEPAWDLHGKYSTDVFTAEAVDII 233
F G+ + + + WG+ D D++ +
Sbjct: 192 FFFGNGF----DQIVEEKNYTNPGFVGSWGV---------SDE------DLYNKADEEFE 232
Query: 234 HNHSTDEPLFLYLAHAATHSANPYEPLQAPDHYLNIHRHIEDFKRSKFAAILHKLDESVG 293
D+P F + ++ H P + P+ + + D + + D ++G
Sbjct: 233 RLSKGDKPFFSLVFTSSNH-----SPYEYPEGKIEQY----DSEHMTRNNAVKYSDYALG 283
Query: 294 KVVEALEQRRMLSNSIIVFVSDNGGAAAGFNLNAASNW--PLRGVKNTLWEGGVRGAGLI 351
+ ++ ++I + ++D+ G NL ++ P LI
Sbjct: 284 TFFDKAKKSSYWDDTIFIVIADHDARVFGANLVPVKHFHIPA----------------LI 327
Query: 352 WSPLLESRGIVAEQYVHVSDWLPTLLSAANKS--------DIPNYVNSTVENIIPRYENS 403
++ R ++ + D PTLLS D+ + E + +Y+ +
Sbjct: 328 IGKDIQPRKD--DRIANNIDMPPTLLSLIGVDAKTPMIGRDLTKPLAREDERAMMQYDKN 385
Query: 404 ILRYENGTHEYNSPRIENSNTRYENGTHEYNPK 436
SP + S Y+ + P
Sbjct: 386 FGYLTRDNLVVLSPGEKVSTMEYDFESQTMKPL 418
>2w5q_A Processed glycerol phosphate lipoteichoic acid synthase;
transmembrane, cell WALL biogenesis/degradation, LTAS,
membrane, secreted; 1.20A {Staphylococcus aureus} PDB:
2w5s_A* 2w5t_A* 2w5r_A*
Length = 424
Score = 69.1 bits (169), Expect = 2e-12
Identities = 53/340 (15%), Positives = 107/340 (31%), Gaps = 49/340 (14%)
Query: 59 PPHIIFILADDLGWNDVGFHGLDQIPTPNIDALA---YSGIILKNYYTVQLCTPSRSAIM 115
+II I + + + TP ++ L+ N++ + +
Sbjct: 29 KKNIIKIHLESFQTFLINKKVNGKEVTPFLNKLSSGKEQFTYFPNFFHQTGQGKTSDSEF 88
Query: 116 TGKHPIHTGM----QHNVLYGCERGGLPLSEKILPQYLKELGYRTRIVGKWHLGFYKKEY 171
T + + Q + IL ++ GY++ ++ + F+
Sbjct: 89 T----MDNSLYGLPQGSAFSLKGDNTYQSLPAIL---DQKQGYKSDVMHGDYKTFWN--- 138
Query: 172 TPTFRGFESHLGY-WTGHQDYFDHSAEEMKMWGLDMRRDLEPAWDLHGKYSTDVFTAEAV 230
H G Y+D S + + GL D +F ++
Sbjct: 139 ---RDQVYKHFGIDKFYDATYYDMSDKNVVNLGL---------KD-------KIFFKDSA 179
Query: 231 DIIHNHSTDEPLFLYLAHAATHSANPYEPLQAPDHYLNIHRHIE-DFKRSKFAAILHKLD 289
+ P + +L H P+ + I + D + LD
Sbjct: 180 NYQAK--MKSPFYSHLITLTNHY--PFT---LDEKDATIEKSNTGDATVDGYIQTARYLD 232
Query: 290 ESVGKVVEALEQRRMLSNSIIVFVSDNGGAAAGFNLNAASNWPLRGVKNTLWEGGVRGAG 349
E++ + + L+++ + NS+I+ D+ G + N NA + + R
Sbjct: 233 EALEEYINDLKKKGLYDNSVIMIYGDHYGISENHN-NAMEKLLGEKITPAKFTDLNRTGF 291
Query: 350 LIWSPLLESRGIVAEQYVHVSDWLPTLLSAANKSDIPNYV 389
I P + +Y D +PT+L A D NY+
Sbjct: 292 WIKIPGKSGG--INNEYAGQVDVMPTILHLAG-IDTKNYL 328
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 69.3 bits (169), Expect = 5e-12
Identities = 81/487 (16%), Positives = 137/487 (28%), Gaps = 173/487 (35%)
Query: 19 KILPQYLKELGYRTRIMAFAVLPLAFTLSMVFV-DLVASSGPPHIIFIL--------ADD 69
KILP+ + A L F + +V LV S +L
Sbjct: 39 KILPEPTEGFAADDEPTTPAELVGKF---LGYVSSLVEPSKVGQFDQVLNLCLTEFENCY 95
Query: 70 LGWNDVGFHGL-DQIPTPNIDALAYSGIILKNYYTVQLCT------PSRSAIM----TGK 118
L ND+ H L ++ N L + ++KNY T ++ S SA+ G
Sbjct: 96 LEGNDI--HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGN 153
Query: 119 HPIHTGMQHNVLYGCERG-GLPLSEKILPQYLKELG--YRTRIVGKWHLGFYKKEYTPTF 175
+ ++G G G Y +EL Y+T Y
Sbjct: 154 AQLVA------IFG---GQGNTDD------YFEELRDLYQT----------YHVLVGDLI 188
Query: 176 RGFESHLGYWTGHQDYFDHSAEEMKMW--GLDMRRDLEPAWDLHGKYSTDVFTAEAVDII 233
+ L + + + K++ GL++ W L
Sbjct: 189 KFSAETL------SELIRTTLDAEKVFTQGLNIL-----EW-LE---------------- 220
Query: 234 HNHSTDEPLFLYLAHAATHSANPYE-PL----QAPDHYLNIHRHIEDFKRSKFAAILHKL 288
+ ++ P YL P PL Q HY+ L
Sbjct: 221 --NPSNTPDKDYLLSI------PISCPLIGVIQLA-HYV---------------VTAKLL 256
Query: 289 DESVGKVVEALEQRRMLSNSIIVFVSDNGGAAAGFNLNAASNWP------LRGVKNTLWE 342
+ G++ L+ S ++ A A + +W + + +
Sbjct: 257 GFTPGELRSYLKGATGHSQGLVT-------AVA---IAETDSWESFFVSVRKAITVLFFI 306
Query: 343 GGVR---------------------GAGLIWSPLLESRGIVAEQYVHVSDWLPTLLSAAN 381
GVR G+ SP+L + EQ + ++ N
Sbjct: 307 -GVRCYEAYPNTSLPPSILEDSLENNEGVP-SPMLSISNLTQEQ-------VQDYVNKTN 357
Query: 382 KSDIPNY-------VNSTVENII---PR--YE-NSILRYENGTHEYNSPRIENSNTRYEN 428
+P VN ++ P+ Y N LR + RI S R
Sbjct: 358 SH-LPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE-RKLK 415
Query: 429 GTHEYNP 435
++ + P
Sbjct: 416 FSNRFLP 422
Score = 53.5 bits (128), Expect = 4e-07
Identities = 67/411 (16%), Positives = 118/411 (28%), Gaps = 120/411 (29%)
Query: 24 YLKEL-----GYRTRIMAFAVLPLAFTLSMVFVDLVASSGPPHIIFILADDL-GWNDVGF 77
Y +EL Y V L + +L+ ++ +F ++ W
Sbjct: 169 YFEELRDLYQTYHV-----LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW----- 218
Query: 78 HGLDQ-IPTPNIDALAYS-----GIILKNYYTVQLCTPSRSAIMTGKHPIHTGMQHNVLY 131
L+ TP+ D L I + +QL +A + G P L
Sbjct: 219 --LENPSNTPDKDYLLSIPISCPLIGV-----IQLAHYVVTAKLLGFTP-------GELR 264
Query: 132 GCERGGLPLSEKILPQYLKELGYRTRIVGKWHLGFYK---KEYTPTFR-GFESHLGY--- 184
+G S+ ++ W F+ K T F G + Y
Sbjct: 265 SYLKGATGHSQGLVTAVA------IAETDSWE-SFFVSVRKAITVLFFIGVRCYEAYPNT 317
Query: 185 ---WTGHQDYFDHSAEEMK-M---WGLDMRRDLEPAWDLHGKYSTDVFTAEAVDI-IHNH 236
+ +D +++ M L + ++ + K ++ + + V+I + N
Sbjct: 318 SLPPSILEDSLENNEGVPSPMLSISNLT-QEQVQDYVN---KTNSHLPAGKQVEISLVN- 372
Query: 237 STDE------PLFLYL-------AHAATH---SANPYE-----------PLQAPDH--YL 267
P LY A A + S P+ P+ +P H L
Sbjct: 373 GAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLL 432
Query: 268 N--IHRHIEDFKRSKFAAILHKLDESV-----GKVVEALEQRRMLSNSIIVFVSDNGGAA 320
+D ++ + + V G + R+LS SI + D
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL------RVLSGSISERIVD----- 481
Query: 321 AGFNLNAASNWPLRGVKNTLW-----EGGVRGAGLIWSPLLESRG---IVA 363
L W GG G G++ + G IVA
Sbjct: 482 CIIRLPV--KWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVA 530
Score = 40.0 bits (93), Expect = 0.005
Identities = 54/303 (17%), Positives = 92/303 (30%), Gaps = 115/303 (37%)
Query: 63 IFILADDLGWNDVGFHGLDQIPTPNIDALAYSGIILKNYYTVQLCTPSRSAIMTGKHPIH 122
++ AD+ + GF LD I++ N P
Sbjct: 1645 VWNRADNHFKDTYGFSILD--------------IVINN--------PVNLT--------- 1673
Query: 123 TGMQHNVLYGCERGGLPLSEKILPQYLKELGYRTRIVGKWHLGFYKKEYTP-----TFRG 177
+ +G E+G ++I Y + + T + GK KE TFR
Sbjct: 1674 ------IHFGGEKG-----KRIRENYSA-MIFETIVDGKLKTEKIFKEINEHSTSYTFRS 1721
Query: 178 FESHLGYWTGHQDYFDHSA---------EEMKMWGLDMRRDLEPAWDL---H--GKYS-- 221
+ L F A E++K GL PA H G+Y+
Sbjct: 1722 EKGLL-----SATQFTQPALTLMEKAAFEDLKSKGL------IPADATFAGHSLGEYAAL 1770
Query: 222 ---TDVFTAEAVDIIHNHSTDEPLFLYLAHA---ATHSANPYEPLQAPDHY----LNIHR 271
DV + E++ + + A P + L +Y +N R
Sbjct: 1771 ASLADVMSIESL-------------VEVVFYRGMTMQVAVPRDEL-GRSNYGMIAINPGR 1816
Query: 272 HIEDFKRSKFAAILHKLDESVGKVVEA----LEQRRMLSNSIIVFVSDNGGAAAGFNLNA 327
F + ++ ++ + G +VE +E N V + G A L+
Sbjct: 1817 VAASFSQEALQYVVERVGKRTGWLVEIVNYNVE------NQQYV-AA--GDLRA---LDT 1864
Query: 328 ASN 330
+N
Sbjct: 1865 VTN 1867
Score = 31.9 bits (72), Expect = 1.3
Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 20/102 (19%)
Query: 625 QVDLTGGPDQVYLSGL-SDREWLALAMRKLRDAASI-QC---------------GPVKEV 667
++ L G + +SG L L +RK + + + Q PV
Sbjct: 367 EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPV-AS 425
Query: 668 PC-EPQIAPCLFDIKNDPCEKNNLADRSEDQRINHYTTEVGR 708
P + P I D KNN++ ++D +I Y T G
Sbjct: 426 PFHSHLLVPASDLINKD-LVKNNVSFNAKDIQIPVYDTFDGS 466
Score = 31.2 bits (70), Expect = 2.3
Identities = 24/126 (19%), Positives = 35/126 (27%), Gaps = 47/126 (37%)
Query: 789 DPCEKNNLADRSEVQR--INHYTTEVGYLDPKQRFNQI----AYLDKEKKKKKKKKKKKK 842
E + + +V + + E YL N I A L +E K K+
Sbjct: 70 SLVEPSKVGQFDQVLNLCLTEF--ENCYL----EGNDIHALAAKLLQENDTTLVKTKE-- 121
Query: 843 KKKKKKKKKKMMKKGYPDVLSQMEKELANINRTAVAPINKPFDKGGDPKNFDHA------ 896
+ K Y TA +PFDK + F
Sbjct: 122 -----------LIKNY---------------ITARIMAKRPFDKKSNSALFRAVGEGNAQ 155
Query: 897 -WSIFG 901
+IFG
Sbjct: 156 LVAIFG 161
>2gso_A Phosphodiesterase-nucleotide pyrophosphatase; alpha beta, NPP,
hydrolase; 1.30A {Xanthomonas axonopodis PV} PDB: 2gsn_A
2gsu_A* 2rh6_A*
Length = 393
Score = 60.1 bits (145), Expect = 1e-09
Identities = 63/388 (16%), Positives = 117/388 (30%), Gaps = 60/388 (15%)
Query: 55 ASSGPPHIIFILADDLGWNDVGFHGLDQIPTPNIDALAYSGIILKNYYTVQ--LCTPSRS 112
++S P ++ I D L LD+ TPN+ LA G+ + L P+
Sbjct: 2 SASTPHALLLISIDGLRA-----DMLDRGITPNLSHLAREGVRARWMAPSYPSLTFPNHY 56
Query: 113 AIMTGKHPIHTGMQHNVLYGCERGGLPLSEKILPQYLKELGYRTRIVGKWHLGFYKKEYT 172
++TG P H G+ HN + GG LS+ + G VG + G + +
Sbjct: 57 TLVTGLRPDHHGIVHNSMRDPTLGGFWLSKSEAVGDARWWGGEPVWVGVENTGQHAATW- 115
Query: 173 PTFRGFESHLGYWTGHQDYFDHSAEEMKMWGLDMRRDLEPAWDLHGKYSTDVFTA-EAVD 231
W G + + + T V +
Sbjct: 116 -----------SWPGSEAAIKGVRPSQWRH-----------YQKGVRLDTRVDAVRGWLA 153
Query: 232 IIHNHSTDEPLFLYLAHAATHSANPYEPLQAPDHYLNIHRHIEDFKRSKFAAILHKLDES 291
+ LY H D + H ++A + +D +
Sbjct: 154 TDGAQRNR-LVTLYFEH--------------VDEAGHDHGPESR----QYADAVRAVDAA 194
Query: 292 VGKVVEALEQRRMLSNSIIVFVSDNGGAAAGFNLNAASNWPLRGVKNTLWEGGVRGAGLI 351
+G+++ +++ + + I+ VSD+G A + T G + G
Sbjct: 195 IGRLLAGMQRDGTRARTNIIVVSDHGMAEVAPGHAISVEDIAPPQIATAITDG-QVIGFE 253
Query: 352 WSPLLESRGIVAEQYVHVSDWLPTLLSAANKSDIPNYVNSTVENIIPRYENSILRYENGT 411
P ++ + H K+++P IP + G
Sbjct: 254 PLPGQQAAAEASVLGAH------DHYDCWRKAELPARWQYGSHPRIPSLV---CQMHEGW 304
Query: 412 HEYNSPRIENSNTRYENGTHEYNPKYEN 439
++ R G+H Y+P +
Sbjct: 305 DALFPDKLAKRAQRGTRGSHGYDPALPS 332
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 58.3 bits (140), Expect = 9e-09
Identities = 46/286 (16%), Positives = 85/286 (29%), Gaps = 70/286 (24%)
Query: 23 QYLKELGYRTRIMAFAVLPLAFTLSMVFVDLVASSGPPHIIFILADDLGWNDVGFHGLDQ 82
L+ YR +V P + + P ++ ++ W DV +
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPS-------AHI-----PTILLSLI-----WFDVIKSDVMV 406
Query: 83 IPTPNIDALAYSGIILKNY--YTVQLCTPSRSAIMTGKHPIHTGMQHNVLYGCERGGLP- 139
+ ++ L ++ K T+ + I+ + +
Sbjct: 407 V----VNKLHKYSLVEKQPKESTISI------------PSIY------LELKVKLENEYA 444
Query: 140 LSEKILPQYLKELGYRTRIVGKWHLGFYKKEYTPTFRGFESHLGYWTGHQDYFDHS--AE 197
L I+ Y + + + +L Y F SH+G+ H +H
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQY----------FYSHIGH---HLKNIEHPERMT 491
Query: 198 EMKMWGLDMRRDLEPAWDLHGKYSTDVFTAEAVDIIHNHSTDEPLFLYLAHAATHSANPY 257
+M LD R + L K D A I N L Y + +
Sbjct: 492 LFRMVFLDFR------F-LEQKIRHDSTAWNASGSILNTLQQ--LKFYKPYICDNDPKYE 542
Query: 258 EPLQAPDHYLNIHRHIEDFKRSKFAAILHK--LDESVGKVVEALEQ 301
+ A +L + E+ SK+ +L + E EA +Q
Sbjct: 543 RLVNAILDFL--PKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
Score = 40.6 bits (94), Expect = 0.003
Identities = 45/267 (16%), Positives = 79/267 (29%), Gaps = 50/267 (18%)
Query: 188 HQDYFDHSAEEMKMWGLDMRRDLEPAW--DLHGKYSTD----VFTAEAVDIIHNHSTDEP 241
H + D E + D+ E A+ + K D + + E +D I
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62
Query: 242 ----LFLYLAHAATHSANPY-EPLQAPDHYLNIHRHIEDFKRSKFAAILHKLDESVGKVV 296
LF L + E + ++ F S + +
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINY---------KFLMSPIKT---EQRQPSMMTR 110
Query: 297 EALEQRRMLSNSIIVFVSDNGGAAAGFNLNAASNWPLRGVKNTLWE---------GGVRG 347
+EQR L N VF +N++ P ++ L E GV G
Sbjct: 111 MYIEQRDRLYNDNQVFAK--------YNVSRLQ--PYLKLRQALLELRPAKNVLIDGVLG 160
Query: 348 AGLIW--SPLLESRGIVAEQYVHVSDWLPTLLSAANKSDIPNYVNSTVENIIPRYENSIL 405
+G W + S + + + WL L + + + + + I P + +
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIF-WL-NLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 406 RYENGTHEYNSPRIENSN----TRYEN 428
N +S + E YEN
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYEN 245
Score = 36.8 bits (84), Expect = 0.040
Identities = 79/523 (15%), Positives = 147/523 (28%), Gaps = 176/523 (33%)
Query: 142 EKILPQYLKEL---GYRTRIVGKWHLGFYKKEYTPTFRGFESHLGY----WTGHQDYFDH 194
E+++ ++++E+ Y K+ + K E ++ + +Q + +
Sbjct: 76 EEMVQKFVEEVLRINY------KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 195 SAEEMKMWGLDMRR---DLEPAWD--LHG-----KYSTDVFTAEAV----------DIIH 234
+ ++ + L +R+ +L PA + + G K + I
Sbjct: 130 NVSRLQPY-LKLRQALLELRPAKNVLIDGVLGSGK---TWVALDVCLSYKVQCKMDFKIF 185
Query: 235 -----NHSTDEPLFLYLAHAATHSANPYEPLQAPDHYLNIHRHIEDFK---RSKFAAILH 286
N ++ E + L + DH NI I + R + +
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWT--SRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 287 K-----LDESV--GKVVEALEQR-RMLSNSIIVFVSDNGGAAAGFNLNAASNWPLRGVKN 338
+ L V K A ++L + V+D AA ++ L
Sbjct: 244 ENCLLVLLN-VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI------SLDHHSM 296
Query: 339 TLWEGGVRGAGLIWSPLLESRGIVAEQYVHVS---------DWLPTLLS--AANKSDIPN 387
TL E + ++ +Y+ P LS A + D
Sbjct: 297 TLTPD-------------EVKSLLL-KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 388 ------YVN---------STVENIIP-----RYEN-SILRYE------------NGTHEY 414
+VN S++ + P ++ S+ +
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402
Query: 415 NSPRIENSNTRYENGTHEYNPKYENRYENGTH-EYNPKYENRYENGTH-----EYNGPK- 467
+ + N +Y E PK + E K EN Y H YN PK
Sbjct: 403 DVMVVVNKLHKY--SLVEKQPKESTISIPSIYLELKVKLENEYA--LHRSIVDHYNIPKT 458
Query: 468 --NENTNPRYENG---------------THEYNIPR--------LENSINGNGTSENRSN 502
+++ P Y + + R LE I + T+ N S
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518
Query: 503 D--------NSYQNEIDGIDVWSVLSRNEPS---KRNTILHNI 534
Y+ I N+P N IL +
Sbjct: 519 SILNTLQQLKFYKPYI---------CDNDPKYERLVNAILDFL 552
Score = 31.4 bits (70), Expect = 2.0
Identities = 43/311 (13%), Positives = 87/311 (27%), Gaps = 93/311 (29%)
Query: 132 GCERGGLPLS-EKILPQYLKELGYRTRIVGKWHLGFYKKEYTPTFRGFESHLGYWTGHQD 190
C LP P+ L I+ + + R + W H +
Sbjct: 312 DCRPQDLPREVLTTNPRRLS-------IIAE------------SIRDGLATWDNWK-HVN 351
Query: 191 YFDHSAEEMKMWGLDMRRDLEPAWDLHGKY-STDVF------TAEAVDIIHNHSTDEPLF 243
D ++ L+ LEPA + + VF + +I +
Sbjct: 352 C-DKLTTIIES-SLN---VLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 244 LYLAHAATHSA---NPYEP-LQAPDHYLNIHRHIEDFKRSKFAAILHKLDESVGKVVEAL 299
+ + +S P E + P YL + +E+ LH+ +V+
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA------LHR------SIVDHY 453
Query: 300 EQRRML-SNSIIVFVSDN---------------GGAAAGFN---LNAASNWPLRGVKNTL 340
+ S+ +I D F L+ R ++ +
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD------FRFLEQKI 507
Query: 341 WEGGVRGAGLIWSPLLESRGIVA--EQYV-HVSDWLPTLLSAANKSDIPNYVNSTVENII 397
R W+ + + Y ++ D N VN + + +
Sbjct: 508 -----RHDSTAWNASGSILNTLQQLKFYKPYICD---------NDPKYERLVN-AILDFL 552
Query: 398 PRYENSILRYE 408
P+ E +++ +
Sbjct: 553 PKIEENLICSK 563
>3q3q_A Alkaline phosphatase; hydrolase; 1.95A {Sphingomonas SP}
Length = 565
Score = 47.1 bits (110), Expect = 2e-05
Identities = 58/469 (12%), Positives = 118/469 (25%), Gaps = 72/469 (15%)
Query: 55 ASSGPPHIIFILADDLGWNDVGFHGLDQIPTPNIDALAYSGIILKNYYTVQLCT---PSR 111
A++ P I+ I D + + Q T + L G + Y T P
Sbjct: 36 AATPPKLIVAISVDQFSADLFSEY--RQYYTGGLKRLTSEGAVFPRGYQSHAATETCPGH 93
Query: 112 SAIMTGKHPIHTGMQHNVLY----------------GCERGGLPLSEKILPQYLKELGYR 155
S I+TG P TG+ N + + G + P +LK
Sbjct: 94 STILTGSRPSRTGIIANNWFDLDAKREDKNLYCAEDESQPGSSSDKYEASPLHLKVPTLG 153
Query: 156 TRIV-----GKWHLGFYKKEYTPTFRGFESHLGYWTGHQDYFDHSAEEMKMWGLDMRRDL 210
R+ + K G + +W G + +
Sbjct: 154 GRMKAANPATRVVSVAGKDRAAIMMGGATADQVWWLGGPQGYVSYKGVAPTPLVTQVNQA 213
Query: 211 EPAWDLHGKYSTDVFTAEAVDIIHNHSTDEPLF------------LYLAHAATHSANPYE 258
++ + + + + +
Sbjct: 214 FAQRLAQPNPGFELPAQCVSKDFPVQAGNRTVGTGRFARDAGDYKGFRISPEQDAMTLAF 273
Query: 259 PLQAPDHYLNIHRHIEDFKRSKFAAI-----------------LHKLDESVGKVVEALEQ 301
A ++ + D +A + +LD +G + L++
Sbjct: 274 AAAAIENMQLGKQAQTDIISIGLSATDYVGHTFGTEGTESCIQVDRLDTELGAFFDKLDK 333
Query: 302 RRMLSNSIIVFVSDNGGAAAGF-----NLNAASNWPLRGVKNTLWEGGVRGAGLIWSPLL 356
+ + ++V +D+GG + + L AGL ++
Sbjct: 334 DGI--DYVVVLTADHGGHDLPERHRMNAMPMEQRVDMALTPKALNATIAEKAGLPGKKVI 391
Query: 357 ESRGIVAEQYVHVSDWLPTLLSAANKSDIPNYVNSTVENIIPRYENSILRYENGTHEYNS 416
S G + Y ++ + V+ + + E + +G E S
Sbjct: 392 WSDGPSGDIYYDKGLTAAQRARVETEALKYLRAHPQVQTVFTKAEIAATPSPSGPPESWS 451
Query: 417 PRIENSNTRYENGT----------HEYNPKYENRYENGTHEYNPKYENR 455
E + Y + + P+ TH + R
Sbjct: 452 LIQEARASFYPSRSGDLLLLLKPRVMSIPEQAVMGSVATHGSPWDTDRR 500
>3szy_A Phosphonoacetate hydrolase; alkaline phosphatase superfamily; 1.35A
{Sinorhizobium meliloti} PDB: 3szz_A 3t00_A 3t01_A
3t02_A
Length = 427
Score = 44.8 bits (105), Expect = 1e-04
Identities = 38/266 (14%), Positives = 68/266 (25%), Gaps = 42/266 (15%)
Query: 60 PHIIFILADDLGWNDVGFHGLDQIPTPNIDALAYSGIILKNYYTVQLCT-PSRSAIMTGK 118
I + D + +D P + + G + + + T P+ +I TG
Sbjct: 24 VPAIAVCLDGCEPAYLD-AAIDAGLMPALKRIKERGAVRLAHSVIPSFTNPNNLSIATGS 82
Query: 119 HPIHTGMQHNVLYGCERG-------GLPLSEKILPQYLKELGYRTRIVGKWHLGFYKKEY 171
P G+ N LY G L + Q + G R +V K
Sbjct: 83 PPAVHGICGNYLYEPSTGEEVMMNDPKFLRAPTIFQAFYDAGARVAVVTAKD-----KLR 137
Query: 172 TPTFRGFESHLGYWTGHQDYFDHSAEEMKMWGLDMRRDLEPAWDLHGKYSTDVFTAEAVD 231
+G G A + + L + F A
Sbjct: 138 ALLGKGLRFDEGRAVCFSSEKSDKATRAEHGIDNASAWLGRPVPEVYSAALSEFVFAAG- 196
Query: 232 IIHNHSTDEPLFLYLAHAATHSANPYEPLQAPDHYLNIHRHIEDFKRSKFAAILHKLDES 291
+ P +YL D+ H++ + D
Sbjct: 197 -VKLLREFRPDIMYLTT--------------TDYVQ--HKYAPGVPEANSF--YEMFDRY 237
Query: 292 VGKVVEALEQRRMLSNSIIVFVSDNG 317
+ ++ + IV +D+G
Sbjct: 238 LAELDGL--------GAAIVVTADHG 255
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 42.1 bits (98), Expect = 2e-04
Identities = 11/56 (19%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
Query: 718 EEEEEKKKKKKKKKKKKKKK------KKKKKKKKKKKYSN--EEEGMRKLRDAASI 765
+E + K +++ ++K KK +++ ++ +K K +N ++ + DA I
Sbjct: 99 QELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADII 154
Score = 40.5 bits (94), Expect = 9e-04
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 13/62 (20%)
Query: 712 IAYPDK---EEE------EEKKK----KKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRK 758
IA D+ E E EE++K K +++ ++K KK ++ + E + K
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEK 133
Query: 759 LR 760
+
Sbjct: 134 NK 135
Score = 37.4 bits (86), Expect = 0.009
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 829 KEKKKK----KKKKKKKKKKKKKKKKKKMMKKGYPDVLSQMEKELANINRTA 876
+E+++K K +++ ++K KK +++ Q+EK N NR A
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKIN-NRIA 141
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 41.8 bits (98), Expect = 0.001
Identities = 30/144 (20%), Positives = 43/144 (29%), Gaps = 44/144 (30%)
Query: 707 GRFNQIAYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQ 766
N PD EE ++ KKK++KKKK K + ++E + + A
Sbjct: 12 SHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVAR-- 69
Query: 767 CGPVKEVPCEPQIAPCLFDIKNDPCEKNNLADRSEVQRINHYTTEVGYLDPKQRFNQIAY 826
E L+ K+R
Sbjct: 70 ------------------------------------------QLERSALEDKERDEDDED 87
Query: 827 LDKEKKKKKKKKKKKKKKKKKKKK 850
D + KKKKKKKKK+ K
Sbjct: 88 GDGDGDGATGKKKKKKKKKRGPKV 111
Score = 39.9 bits (93), Expect = 0.003
Identities = 14/67 (20%), Positives = 22/67 (32%)
Query: 681 KNDPCEKNNLADRSEDQRINHYTTEVGRFNQIAYPDKEEEEEKKKKKKKKKKKKKKKKKK 740
P E + + +++E++E KKKKKKK
Sbjct: 45 SKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKK 104
Query: 741 KKKKKKK 747
KK+ K
Sbjct: 105 KKRGPKV 111
Score = 39.1 bits (91), Expect = 0.005
Identities = 16/70 (22%), Positives = 27/70 (38%)
Query: 679 DIKNDPCEKNNLADRSEDQRINHYTTEVGRFNQIAYPDKEEEEEKKKKKKKKKKKKKKKK 738
K + ++ D+ EV R + + + +E +E + KK
Sbjct: 40 RKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKK 99
Query: 739 KKKKKKKKKK 748
KKKKKKK+
Sbjct: 100 KKKKKKKRGP 109
Score = 38.0 bits (88), Expect = 0.015
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 716 DKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSN 751
+ +E+++ KKKKKKKKK+ K ++
Sbjct: 79 KERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQTD 114
Score = 29.5 bits (66), Expect = 5.3
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Query: 812 VGYLDPKQRFNQIAYLDKEKKKKKKKKKKKKKKKKKKKKKKMMKKGYPDVLSQMEKELAN 871
G LDP R A +E KKK++KKKK K +++ K+ + ++ ++L
Sbjct: 15 NGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKES-GASVDEVARQLER 73
Query: 872 INRTAVAPINKPFDKGGDPKN 892
D GD
Sbjct: 74 SALEDKERDEDDEDGDGDGDG 94
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 40.6 bits (94), Expect = 0.002
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 709 FNQIAYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQ 766
Q P ++KK+ K+ K KK K ++KKKK + + ++ R A ++
Sbjct: 54 IGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLE 111
Score = 39.0 bits (90), Expect = 0.004
Identities = 19/68 (27%), Positives = 31/68 (45%)
Query: 829 KEKKKKKKKKKKKKKKKKKKKKKKMMKKGYPDVLSQMEKELANINRTAVAPINKPFDKGG 888
+K K ++KKKK+ K K K+++M K D L ++ E ++ A+A K
Sbjct: 82 PKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLFDVKNEDGDVIGHALAMEGKVMKPLH 141
Query: 889 DPKNFDHA 896
DH
Sbjct: 142 VKGTIDHP 149
Score = 37.1 bits (85), Expect = 0.019
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 715 PDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDA 762
P ++++ K+ K KK K ++KKKK+ K K + ++ D
Sbjct: 67 PPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADR 114
Score = 32.9 bits (74), Expect = 0.38
Identities = 10/53 (18%), Positives = 22/53 (41%)
Query: 722 EKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQCGPVKEVP 774
+ ++KK+ K+ K KK K ++KK + R +++ +
Sbjct: 65 PRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLFD 117
Score = 32.9 bits (74), Expect = 0.41
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 828 DKEKKKKKKKKKKKKKKKKKKKKKKMMKKGYPDVLSQMEKELAN 871
++KK+ K+ K KK K ++KKKK K P +M +L
Sbjct: 69 PRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEA 112
Score = 32.5 bits (73), Expect = 0.52
Identities = 14/80 (17%), Positives = 31/80 (38%), Gaps = 10/80 (12%)
Query: 710 NQIAYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQCGP 769
+ + + + + ++KK+ K+ K KK K + +++ + P
Sbjct: 50 SALVIGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKT---------KP 100
Query: 770 VKEVPCEPQIAP-CLFDIKN 788
K ++ LFD+KN
Sbjct: 101 GKRQRMALKLEADRLFDVKN 120
Score = 31.7 bits (71), Expect = 0.99
Identities = 15/54 (27%), Positives = 23/54 (42%)
Query: 803 QRINHYTTEVGYLDPKQRFNQIAYLDKEKKKKKKKKKKKKKKKKKKKKKKMMKK 856
+I TT V L Q + ++KK+ K+ K KK K ++ KK
Sbjct: 40 SQIQQLTTAVSALVIGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKK 93
Score = 30.2 bits (67), Expect = 2.8
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 829 KEKKKKKKKKKKKKKKKKKKKKKKMMKKGYP 859
++KK+ K+ K KK K + KK P
Sbjct: 65 PRPPPRQKKQAPKQPPKPKKPKPQEKKKKQP 95
Score = 28.6 bits (63), Expect = 9.5
Identities = 7/39 (17%), Positives = 15/39 (38%)
Query: 821 FNQIAYLDKEKKKKKKKKKKKKKKKKKKKKKKMMKKGYP 859
Q + + ++KK+ K+ K KK ++
Sbjct: 54 IGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKK 92
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 40.5 bits (94), Expect = 0.002
Identities = 43/212 (20%), Positives = 76/212 (35%), Gaps = 36/212 (16%)
Query: 725 KKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQ------CGPVKEVPCEPQ 778
K K K K KK + KKKK KK+ + + + R I+ GPV P EP
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKKEEEQKWKWWEEERYPEGIKWKFLEHKGPVFAPPYEPL 60
Query: 779 IAPCLFDIKNDPCEKNNLADR---------------SEVQRINHYTTEVGYLDPKQR--- 820
F + + A+ E+ R N + + +++
Sbjct: 61 PENVKFYYDGKVMKLSPKAEEVATFFAKMLDHEYTTKEIFRKNFFKDWRKEMTNEEKNII 120
Query: 821 -------FNQI-AYLDKEKKKKKKKKKKKKKKKKKKKKKKMMKKGYPDVLSQMEKELANI 872
F Q+ Y + + +K+ K++K K K++ +K + + G+ M+ I
Sbjct: 121 TNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKEYGF----CIMDNHKERI 176
Query: 873 NRTAVAPINKPFDKGGDPKNFDHAWSIFGDDL 904
+ P +G PK I +D+
Sbjct: 177 ANFKIEPPGLFRGRGNHPKMGMLKRRIMPEDI 208
Score = 33.2 bits (75), Expect = 0.39
Identities = 26/146 (17%), Positives = 50/146 (34%), Gaps = 25/146 (17%)
Query: 700 NHYTTEVGRFNQIAYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKL 759
NH F + + + + KK++ ++ K K K K K E +K
Sbjct: 457 NHQRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKK- 515
Query: 760 RDAASIQCGPVKEVPCEPQIAPCLFDIKNDPCEKNNLADRSEVQRINHYTTEVGYLDPKQ 819
+ + + DR E ++I T+++ YLDP+
Sbjct: 516 ------------------AVQRLEEQLMK---LEVQATDREENKQIALGTSKLNYLDPRI 554
Query: 820 RFNQIAYLDKEKKKKKKKKKKKKKKK 845
+A+ K +K K +++K
Sbjct: 555 ---TVAWCKKWGVPIEKIYNKTQREK 577
Score = 32.0 bits (72), Expect = 1.1
Identities = 8/29 (27%), Positives = 19/29 (65%)
Query: 721 EEKKKKKKKKKKKKKKKKKKKKKKKKKKY 749
+ + + +K+ K++K K K++ +K K+Y
Sbjct: 136 KAQTEARKQMSKEEKLKIKEENEKLLKEY 164
Score = 29.3 bits (65), Expect = 6.1
Identities = 7/28 (25%), Positives = 18/28 (64%)
Query: 720 EEEKKKKKKKKKKKKKKKKKKKKKKKKK 747
+ + + +K+ K++K K K++ +K K+
Sbjct: 136 KAQTEARKQMSKEEKLKIKEENEKLLKE 163
Score = 29.3 bits (65), Expect = 7.1
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 718 EEEEEKKKKKKKKKKKKKKKKKKKKKKK 745
+ + E +K+ K++K K K++ +K K+
Sbjct: 136 KAQTEARKQMSKEEKLKIKEENEKLLKE 163
Score = 29.0 bits (64), Expect = 7.9
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 818 KQRFNQIAYLDKEKKKKKKKKKKKKKKKKKKKKKKMMKKGYPDVLSQMEKEL 869
+Q + L K K K K KK + KKK + + + L ++E +
Sbjct: 482 EQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQR--LEEQLMKLEVQA 531
>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2,
protein complex, autoimmune disease, endonuclease,
hydrolase, metal-binding; 2.90A {Mus musculus} PDB:
3p5j_B 3puf_B 3p56_B
Length = 332
Score = 39.8 bits (92), Expect = 0.003
Identities = 11/49 (22%), Positives = 18/49 (36%)
Query: 713 AYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRD 761
+ E +E K K K KK K +K ++ GM+ +
Sbjct: 272 LSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKSGMKSIDA 320
Score = 38.3 bits (88), Expect = 0.010
Identities = 19/146 (13%), Positives = 39/146 (26%), Gaps = 16/146 (10%)
Query: 614 KLVKVVKVMRYQVDLTGGPDQVYLSGLSDREWLALAMRKLRDAASIQCGPVKEVPCEPQI 673
K+ + V ++ G Q + +R A + + ++
Sbjct: 191 KVNQTVVALKANNVNVGARVQSSAYFSGGQVSRDKEEDYVRYAHGLISDYIP-----KEL 245
Query: 674 APCLFDIKNDPCEKNNLADRSEDQRINHYTTEVGRFNQIAYPDKEEEEEKKKKKKKKKKK 733
+ L P +L + + + + + K+ + KK K +K
Sbjct: 246 SDDLSKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQK 305
Query: 734 KKKKKK-----------KKKKKKKKK 748
K K KK K
Sbjct: 306 ALAKVDKSGMKSIDAFFGAKNKKTGK 331
Score = 36.3 bits (83), Expect = 0.041
Identities = 9/29 (31%), Positives = 10/29 (34%)
Query: 828 DKEKKKKKKKKKKKKKKKKKKKKKKMMKK 856
K KK K +K K K MK
Sbjct: 289 KDLKTGKKNSKMTAAQKALAKVDKSGMKS 317
Score = 33.6 bits (76), Expect = 0.22
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 825 AYLDKEKKKKKKKKKKKKKKKKKKKKKKMMKKG 857
Y K K KK K +K K+ K G
Sbjct: 282 DYTKFNTKDLKTGKKNSKMTAAQKALAKVDKSG 314
Score = 31.7 bits (71), Expect = 1.1
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 828 DKEKKKKKKKKKKKKKKKKKKKKKKMMKK 856
+ K K K KK K +K + K
Sbjct: 281 EDYTKFNTKDLKTGKKNSKMTAAQKALAK 309
Score = 30.6 bits (68), Expect = 2.1
Identities = 6/25 (24%), Positives = 9/25 (36%)
Query: 829 KEKKKKKKKKKKKKKKKKKKKKKKM 853
+K K +K K K K +
Sbjct: 294 GKKNSKMTAAQKALAKVDKSGMKSI 318
Score = 30.6 bits (68), Expect = 2.6
Identities = 7/27 (25%), Positives = 9/27 (33%)
Query: 829 KEKKKKKKKKKKKKKKKKKKKKKKMMK 855
KK K +K K K K +
Sbjct: 293 TGKKNSKMTAAQKALAKVDKSGMKSID 319
Score = 30.2 bits (67), Expect = 3.1
Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 3/51 (5%)
Query: 809 TTEVGYLDPKQRFNQIAYLDKEKKKKKKKKKKKKKKKKKK---KKKKMMKK 856
+ K + + KE K K K KK K +K + K
Sbjct: 260 ASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKV 310
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding
protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D
3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D
3azj_D 3azk_D 3azl_D 3azm_D ...
Length = 126
Score = 37.8 bits (87), Expect = 0.003
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 715 PDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYS 750
P K KK KK K +KK KK+KK +K+ YS
Sbjct: 4 PAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKESYS 39
Score = 36.7 bits (84), Expect = 0.006
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 720 EEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEE 753
E K KK KK K +KK KK+K S +E
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKE 36
Score = 36.7 bits (84), Expect = 0.006
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKL 759
+ + KK KK K +KK KK+KK + + + K+
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKESYSIYVYKV 45
Score = 36.7 bits (84), Expect = 0.007
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 715 PDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYS 750
P+ + KK KK K +KK KK+KK +K S
Sbjct: 2 PEPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRKES 37
Score = 33.6 bits (76), Expect = 0.087
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 829 KEKKKKKKKKKKKKKKKKKKKKKKMMKKGY 858
KK KK K +KK KK+KK K+ Y
Sbjct: 9 PAPKKGSKKAVTKTQKKGDKKRKKSRKESY 38
Score = 30.9 bits (69), Expect = 0.74
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 828 DKEKKKKKKKKKKKKKKKKKKKKKKMMKKG 857
KK KK K +KK KK+ +
Sbjct: 6 KSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 29.0 bits (64), Expect = 2.8
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 829 KEKKKKKKKKKKKKKKKKKKKKKKMMKK 856
+ K KK KK K +KK K+
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKR 30
Score = 28.6 bits (63), Expect = 4.6
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 829 KEKKKKKKKKKKKKKKKKKKKKKKMMKK 856
+ KK KK K +KK K KK
Sbjct: 5 AKSAPAPKKGSKKAVTKTQKKGDKKRKK 32
Score = 27.8 bits (61), Expect = 8.6
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 828 DKEKKKKKKKKKKKKKKKKKKKKKKMMKK 856
+ K KK KK K +KK +K
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRK 31
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 108
Score = 36.9 bits (85), Expect = 0.005
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 715 PDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSN 751
P K++ K K K+KKKK K K+K+K +N
Sbjct: 3 PKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNN 39
Score = 35.4 bits (81), Expect = 0.012
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 715 PDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKK 747
K+++ K K K+KKKK K K+K
Sbjct: 2 APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQK 34
Score = 32.3 bits (73), Expect = 0.20
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 723 KKKKKKKKKKKKKKKKKKKKKKKKKKYSNEE 753
K K K K K+KKKK K +E
Sbjct: 5 KDKAPPPSSKPAKSGGGKQKKKKWSKGKQKE 35
Score = 30.7 bits (69), Expect = 0.58
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 829 KEKKKKKKKKKKKKKKKKKKKKKKMMKK 856
K+K K K K+KKKK K
Sbjct: 5 KDKAPPPSSKPAKSGGGKQKKKKWSKGK 32
Score = 30.7 bits (69), Expect = 0.61
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 828 DKEKKKKKKKKKKKKKKKKKKKKKK 852
DK K K K+KKKK K
Sbjct: 6 DKAPPPSSKPAKSGGGKQKKKKWSK 30
Score = 30.0 bits (67), Expect = 1.0
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 828 DKEKKKKKKKKKKKKKKKKKKKKKKMMKK 856
K K K+KKKK K K +K
Sbjct: 8 APPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 30.0 bits (67), Expect = 1.1
Identities = 10/27 (37%), Positives = 11/27 (40%)
Query: 831 KKKKKKKKKKKKKKKKKKKKKKMMKKG 857
K K K K K+KKK KG
Sbjct: 5 KDKAPPPSSKPAKSGGGKQKKKKWSKG 31
Score = 29.2 bits (65), Expect = 2.3
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 828 DKEKKKKKKKKKKKKKKKKKKKKKKM 853
+ K K+KKKK K K+K+K+
Sbjct: 12 SSKPAKSGGGKQKKKKWSKGKQKEKV 37
Score = 27.3 bits (60), Expect = 9.8
Identities = 8/28 (28%), Positives = 10/28 (35%)
Query: 828 DKEKKKKKKKKKKKKKKKKKKKKKKMMK 855
+ K K K+KKKK K
Sbjct: 5 KDKAPPPSSKPAKSGGGKQKKKKWSKGK 32
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Length = 108
Score = 36.5 bits (84), Expect = 0.005
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 715 PDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSN 751
P K++ + K KK KKK KK K + +
Sbjct: 2 PPKQQLSKAAKAAAALAGGKKSKKKWSKKSMKDRAQH 38
Score = 31.1 bits (70), Expect = 0.47
Identities = 8/27 (29%), Positives = 10/27 (37%)
Query: 831 KKKKKKKKKKKKKKKKKKKKKKMMKKG 857
K++ K K KK KK K
Sbjct: 4 KQQLSKAAKAAAALAGGKKSKKKWSKK 30
Score = 30.7 bits (69), Expect = 0.57
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 829 KEKKKKKKKKKKKKKKKKKKKKK 851
K++ K K KK KKK
Sbjct: 4 KQQLSKAAKAAAALAGGKKSKKK 26
Score = 30.0 bits (67), Expect = 1.1
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 829 KEKKKKKKKKKKKKKKKKKKKKKKMMKK 856
+++ K K KK KKK KK
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKKWSKK 30
Score = 29.6 bits (66), Expect = 1.4
Identities = 11/28 (39%), Positives = 11/28 (39%)
Query: 828 DKEKKKKKKKKKKKKKKKKKKKKKKMMK 855
K K KK KKK KK MK
Sbjct: 6 QLSKAAKAAAALAGGKKSKKKWSKKSMK 33
Score = 29.2 bits (65), Expect = 1.8
Identities = 9/26 (34%), Positives = 10/26 (38%)
Query: 828 DKEKKKKKKKKKKKKKKKKKKKKKKM 853
K KK KKK KK K +
Sbjct: 11 AKAAAALAGGKKSKKKWSKKSMKDRA 36
Score = 28.8 bits (64), Expect = 3.0
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 828 DKEKKKKKKKKKKKKKKKKKKKKKKMMKK 856
+ K KK KKK KK M +
Sbjct: 7 LSKAAKAAAALAGGKKSKKKWSKKSMKDR 35
>3iz5_G 60S ribosomal protein L6 (L6E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_G
Length = 219
Score = 38.5 bits (89), Expect = 0.005
Identities = 24/147 (16%), Positives = 47/147 (31%), Gaps = 19/147 (12%)
Query: 726 KKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDA---------ASIQCGPVKEVPCE 776
K K K +K + K+ ++ + ++I G V +
Sbjct: 27 AIKAKHGGALPKAEKPAAIAEPKFYPADDVKPRTVSTRKPHPTKLRSTITPGTVLILLAG 86
Query: 777 PQIAPCLFDIKN---------DPCEKNNLADRSEVQRINHYT-TEVGYLDPKQRFNQIAY 826
+ + +K P + N + R Q T T+V + Y
Sbjct: 87 RYMGKRVVFLKQLQSGLLLITGPFKINGVPIRRVNQAYVIATSTKVDISKVNVQKFDDKY 146
Query: 827 LDKEKKKKKKKKKKKKKKKKKKKKKKM 853
+EKK + KK + + + K+ K +
Sbjct: 147 FAREKKTRAKKTEGELFESDKEATKNL 173
Score = 30.0 bits (67), Expect = 2.9
Identities = 8/40 (20%), Positives = 12/40 (30%)
Query: 820 RFNQIAYLDKEKKKKKKKKKKKKKKKKKKKKKKMMKKGYP 859
R ++ + K K K +K K YP
Sbjct: 13 RASRSHTYHRRGLWAIKAKHGGALPKAEKPAAIAEPKFYP 52
Score = 29.6 bits (66), Expect = 4.0
Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 724 KKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQCGPVKEVP 774
++KK + KK + + + K+ K + ++ +K+ DA I+ + VP
Sbjct: 148 AREKKTRAKKTEGELFESDKEATKNLPDFKKDDQKVIDAELIKA--IDAVP 196
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_e
3o58_G 3o5h_G 3u5e_F 3u5i_F
Length = 244
Score = 38.6 bits (89), Expect = 0.005
Identities = 7/42 (16%), Positives = 19/42 (45%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRK 758
+++ E+ ++ +K K+K+ ++ Y E E +
Sbjct: 19 QQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAER 60
Score = 37.9 bits (87), Expect = 0.009
Identities = 6/45 (13%), Positives = 22/45 (48%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRD 761
K +++ ++ ++ +K K+K+ ++ + ++E R+
Sbjct: 17 KAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERN 61
Score = 37.5 bits (86), Expect = 0.013
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 4/69 (5%)
Query: 818 KQRFNQIAYLDKEKKKKKKKKKKKKKKKKKKKKKKMMKKGYPDVLSQMEKELANINRTAV 877
K + Q ++ +K K+K+ ++ +K Y E+ + R A
Sbjct: 15 KSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEY----ETAERNIIQAKRDAK 70
Query: 878 APINKPFDK 886
A + +
Sbjct: 71 AAGSYYVEA 79
Score = 35.2 bits (80), Expect = 0.076
Identities = 10/47 (21%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKY-SNEEEGMRKLRDA 762
E+ ++ +K K+K+ ++ +K+Y + E ++ RDA
Sbjct: 23 AEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRDA 69
Score = 32.9 bits (74), Expect = 0.36
Identities = 6/52 (11%), Positives = 17/52 (32%)
Query: 708 RFNQIAYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKL 759
+ Q E +K K+K+ ++ +K+ + ++
Sbjct: 17 KAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRD 68
Score = 31.7 bits (71), Expect = 0.86
Identities = 9/57 (15%), Positives = 21/57 (36%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQCGPVKEV 773
E +K K+K+ ++ +K+ + N + R + A S ++
Sbjct: 27 AAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRDAKAAGSYYVEAQHKL 83
Score = 31.3 bits (70), Expect = 1.3
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 723 KKKKKKKKKKKKKKKKKKKKKKKKKK 748
KK K ++K ++ ++ +K K+
Sbjct: 14 KKSKAQQKTAEQVAAERAARKAANKE 39
Score = 30.2 bits (67), Expect = 2.3
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 723 KKKKKKKKKKKKKKKKKKKKKKKKKK 748
K K ++K ++ ++ +K K+K
Sbjct: 15 KSKAQQKTAEQVAAERAARKAANKEK 40
Score = 30.2 bits (67), Expect = 3.1
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 721 EEKKKKKKKKKKKKKKKKKKKKKKKKKK 748
E + KK K ++K ++ ++ +K
Sbjct: 10 ESQLKKSKAQQKTAEQVAAERAARKAAN 37
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia
chrysanthemi} SCOP: b.80.1.9
Length = 400
Score = 39.0 bits (90), Expect = 0.006
Identities = 36/281 (12%), Positives = 75/281 (26%), Gaps = 14/281 (4%)
Query: 306 SNSIIVFVSDNGGAAAGFNLNAASNWPLRGVKNTLWEGGVRGAGLIWSPLLESRGIVAEQ 365
+ I + N G A S W + G+ +
Sbjct: 78 DGAPIYVAAANCGRAVFDFSFPDSQWVQASYGFYVTGDYWYFKGVEVTR-----AGYQGA 132
Query: 366 YVHVSDWLPTLLSAANKSDIPNYVNSTVENIIPRYENSILRYENGTHEYNSPRIENSNTR 425
YV S + + + +N+ ++ Y+ + + +
Sbjct: 133 YVIGSHNTFENTAFHHNRNTGLEINNGGSYNTVINSDAYRNYDPKKNGSMADGFGPKQKQ 192
Query: 426 YENGTHEYNPKYENRYENGTHEYNPKYENRYENGTHEYNGPKNENTNPRYENGTHEYNIP 485
+EN ++G ++ + EN NG N + NG
Sbjct: 193 GPGNRFVGCRAWEN-SDDGFDLFDSPQKVVIENSWAFRNGINYWNDSAFAGNGNGFK--- 248
Query: 486 RLENSINGNGTSENRSNDNSYQNEIDGIDVWSVLSRNEPSKRNTILHNIDDEWQISALTR 545
N + + ++ N G D + NT N + S +
Sbjct: 249 ---LGGNQAVGNHRITRSVAFGNVSKGFDQNNNAGGVTVI-NNTSYKNGINYGFGSNVQS 304
Query: 546 GKWKLVKEN-SINGNGTSENRSNDNSYQNEIDGIDVWSVLS 585
G+ + N S++ + T N ++ + +S
Sbjct: 305 GQKHYFRNNVSLSASVTVSNADAKSNSWDTGPAASASDFVS 345
Score = 30.2 bits (67), Expect = 3.5
Identities = 16/137 (11%), Positives = 38/137 (27%), Gaps = 14/137 (10%)
Query: 463 YNGPKNENTNPRYENGTHEYNI-------PRLENSINGNGTSENRSNDNSYQNEIDGIDV 515
Y G ++ +EN +N + N + + + DG
Sbjct: 129 YQGAYVIGSHNTFENTAFHHNRNTGLEINNGGSYNTVINSDAYRNYDPKKNGSMADGFGP 188
Query: 516 WSVLSRNEPSKRNTILHNIDDEWQISALTRGKWKLVKENSINGNGTSEN-----RSNDNS 570
N DD + + + +++ + NG + N N
Sbjct: 189 KQKQGPGNRFVGCRAWENSDDGFDL--FDSPQKVVIENSWAFRNGINYWNDSAFAGNGNG 246
Query: 571 YQNEIDGIDVWSVLSRN 587
++ + ++R+
Sbjct: 247 FKLGGNQAVGNHRITRS 263
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_C 4a1c_C 4a1e_C
Length = 410
Score = 38.6 bits (89), Expect = 0.007
Identities = 13/56 (23%), Positives = 22/56 (39%)
Query: 708 RFNQIAYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAA 763
+ N A KE+ ++ + K K++ K +K K KK K + A
Sbjct: 332 KLNPAAKIVKEQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEA 387
Score = 37.9 bits (87), Expect = 0.015
Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 2/87 (2%)
Query: 687 KNNLADRSEDQRINHYTTEVGRFNQIAYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKK 746
KN L + + ++N V + A + + +++ K +K K KK +
Sbjct: 321 KNPLTNNNALFKLNPAAKIVKEQAKKA--AEASKAKRQATLKANRKAAKTHKKGSQAWIA 378
Query: 747 KKYSNEEEGMRKLRDAASIQCGPVKEV 773
EE + K R + +E+
Sbjct: 379 AFNKANEEAIAKARQEDADFIAQGQEI 405
Score = 36.0 bits (82), Expect = 0.050
Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 9/88 (10%)
Query: 793 KNNLADRSEVQRINHYTTEVGYLDPKQRFNQIAYLDKEKKKKKKKKKKKKKKKKKKKKKK 852
KN L + + + ++N V + A E K K++ K +K K KK
Sbjct: 321 KNPLTNNNALFKLNPAAKIVK---------EQAKKAAEASKAKRQATLKANRKAAKTHKK 371
Query: 853 MMKKGYPDVLSQMEKELANINRTAVAPI 880
+ E+ +A + I
Sbjct: 372 GSQAWIAAFNKANEEAIAKARQEDADFI 399
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 38.6 bits (90), Expect = 0.007
Identities = 7/32 (21%), Positives = 23/32 (71%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKK 748
+E +++++ ++K ++ K K+K +K++ +K+
Sbjct: 309 VKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 36.3 bits (84), Expect = 0.035
Identities = 7/33 (21%), Positives = 22/33 (66%)
Query: 716 DKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKK 748
+ +E +K+++ ++K ++ K K+K +K++ +
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLE 338
Score = 36.3 bits (84), Expect = 0.038
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 716 DKEEEEEKKKKKKKKKKKKKKKKKKKK 742
+ E EEK ++ K K+K +K++ +K+
Sbjct: 314 KRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 35.5 bits (82), Expect = 0.067
Identities = 8/33 (24%), Positives = 21/33 (63%)
Query: 713 AYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKK 745
A + ++ E ++K ++ K K+K +K++ +K+
Sbjct: 308 AVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 32.4 bits (74), Expect = 0.70
Identities = 6/28 (21%), Positives = 21/28 (75%)
Query: 829 KEKKKKKKKKKKKKKKKKKKKKKKMMKK 856
+++++ ++K ++ K K+K +K+++ K+
Sbjct: 313 QKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 31.3 bits (71), Expect = 1.3
Identities = 6/31 (19%), Positives = 21/31 (67%)
Query: 722 EKKKKKKKKKKKKKKKKKKKKKKKKKKYSNE 752
++ +K+++ ++K ++ K K+K +K++ +
Sbjct: 310 KENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 29.3 bits (66), Expect = 5.8
Identities = 5/25 (20%), Positives = 16/25 (64%)
Query: 828 DKEKKKKKKKKKKKKKKKKKKKKKK 852
+ + ++K ++ K K+K +K++ +
Sbjct: 314 KRRETEEKMRRAKLAKEKAEKERLE 338
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA
complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Length = 123
Score = 36.2 bits (83), Expect = 0.009
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 722 EKKKKKKKKKKKKKKKKKKKKKKKKKKYSNE 752
K K KK K +K K KKKK+ E
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRKE 33
Score = 35.4 bits (81), Expect = 0.019
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 720 EEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKL 759
+ K KK K +K K KKKK+K+ + + +
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRKESYAIYIYTV 42
Score = 35.1 bits (80), Expect = 0.027
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 719 EEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYS 750
+ K KK K +K K KKKK+K+K S
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRKES 34
Score = 34.3 bits (78), Expect = 0.042
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYS 750
+ + KK K +K K KKKK+K+K+ Y+
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRKESYA 36
Score = 34.3 bits (78), Expect = 0.047
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 715 PDKEEEEEKKKKKKKKKKKKKKKKKKKKKKK 745
P K + KK K +K K KKKK+K+K
Sbjct: 2 PPKTSGKAAKKAGKAQKNITKTDKKKKRKRK 32
Score = 32.7 bits (74), Expect = 0.17
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 829 KEKKKKKKKKKKKKKKKKKKKKKKMMKKGY 858
K KK K +K K KKKK+ K+ Y
Sbjct: 6 SGKAAKKAGKAQKNITKTDKKKKRKRKESY 35
Score = 32.0 bits (72), Expect = 0.30
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 829 KEKKKKKKKKKKKKKKKKKKKKKKMMKK 856
K KK K +K K KKKK +K
Sbjct: 5 TSGKAAKKAGKAQKNITKTDKKKKRKRK 32
Score = 31.2 bits (70), Expect = 0.59
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 829 KEKKKKKKKKKKKKKKKKKKKKKKMMKK 856
K K KK K +K K KKK K+
Sbjct: 4 KTSGKAAKKAGKAQKNITKTDKKKKRKR 31
Score = 30.4 bits (68), Expect = 0.91
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 829 KEKKKKKKKKKKKKKKKKKKKKKK 852
+ K KK K +K K KK
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKK 26
Score = 29.3 bits (65), Expect = 2.4
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 830 EKKKKKKKKKKKKKKKKKKKKKKMMKK 856
K K KK K +K K K K+
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKR 29
Score = 28.1 bits (62), Expect = 5.8
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 713 AYPDKEEEEEKKKKKKKKKKKKKKKKKKK 741
K ++ K +K K KKKK+K+K
Sbjct: 4 KTSGKAAKKAGKAQKNITKTDKKKKRKRK 32
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 38.3 bits (89), Expect = 0.009
Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 9/58 (15%)
Query: 716 DKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKK----KYSNEEEG-----MRKLRDAAS 764
+ E EEK ++ K K+K +K++ +K++K+++ +E G + L+ A+
Sbjct: 385 KRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDETGVMDSLLEALQSGAA 442
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_e
Length = 244
Score = 37.5 bits (86), Expect = 0.011
Identities = 9/56 (16%), Positives = 21/56 (37%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQCGPVKE 772
+ EE +KK+K +K K + K + E + ++ ++ +
Sbjct: 19 RREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQLKREARMK 74
Score = 34.8 bits (79), Expect = 0.10
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
Query: 818 KQRFNQIAYLDKEKKKKKKKKKKKKKKKKKKKKKKMMKKGYPDVLSQMEKELANINRTAV 877
K+R ++ +K++K +K K + K + + Y +KEL + R A
Sbjct: 17 KRRREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEY----EAQDKELVQLKREAR 72
Query: 878 APINKPFD 885
Sbjct: 73 MKGGFYVS 80
Score = 33.7 bits (76), Expect = 0.22
Identities = 9/50 (18%), Positives = 19/50 (38%)
Query: 716 DKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASI 765
++ EKK+K +K K + K + ++ E ++L
Sbjct: 21 EEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQLKRE 70
Score = 33.7 bits (76), Expect = 0.22
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKK 748
K EE +KK+K +K K + K
Sbjct: 17 KRRREEVWAAEKKQKVAAEKIKAAENTKVIYA 48
Score = 32.9 bits (74), Expect = 0.40
Identities = 6/53 (11%), Positives = 22/53 (41%)
Query: 708 RFNQIAYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLR 760
R ++ +K+++ +K K + K + ++ + + E +++
Sbjct: 19 RREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQLKREA 71
Score = 31.7 bits (71), Expect = 0.86
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 723 KKKKKKKKKKKKKKKKKKKKKKKKKK 748
K+++++ +KK+K +K K +
Sbjct: 16 LKRRREEVWAAEKKQKVAAEKIKAAE 41
Score = 30.6 bits (68), Expect = 1.8
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 720 EEEKKKKKKKKKKKKKKKKKKKKKKKKKK 748
E+ K+++++ +KK+K +K K
Sbjct: 12 EKVILKRRREEVWAAEKKQKVAAEKIKAA 40
Score = 29.4 bits (65), Expect = 4.3
Identities = 9/62 (14%), Positives = 21/62 (33%)
Query: 708 RFNQIAYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQC 767
R A K++ +K K + K + ++ + + + + R+ R
Sbjct: 20 REEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQLKREARMKGGFYV 79
Query: 768 GP 769
P
Sbjct: 80 SP 81
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 266
Score = 37.6 bits (86), Expect = 0.011
Identities = 31/151 (20%), Positives = 53/151 (35%), Gaps = 5/151 (3%)
Query: 725 KKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQCGPVKEVPCEPQIAPCLF 784
K KK K KK KK++ KK N R ++ Q K P
Sbjct: 3 KGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRP-KNFGIGQDIQPKRDLTRFVKWPRYI 61
Query: 785 DIKNDPCEKNNLADRSEVQ-RINHYTTEVGYLDPKQRFNQIAYLDKEKKKKKKKKKKKKK 843
++ ++ L R +V IN +T + Q E K++KK++ +
Sbjct: 62 RLQR---QRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARA 118
Query: 844 KKKKKKKKKMMKKGYPDVLSQMEKELANINR 874
+KK K + K P + + + +
Sbjct: 119 EKKAAGKGDVPTKRPPVLRAGVNTVTTLVEN 149
Score = 33.0 bits (74), Expect = 0.39
Identities = 24/167 (14%), Positives = 55/167 (32%), Gaps = 23/167 (13%)
Query: 715 PDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEG---------MRKLRDAASI 765
P ++ + KK KK++ KK +K+ N G R ++ I
Sbjct: 2 PKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYI 61
Query: 766 QCGPVKEVPCEPQIAPCLFDIKNDPCEKNNLADRSEVQRINHYTTEVGYLDPKQRFNQIA 825
+ + + + P + ++ ++ + Y E
Sbjct: 62 RLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKL--AHKYRPET------------K 107
Query: 826 YLDKEKKKKKKKKKKKKKKKKKKKKKKMMKKGYPDVLSQMEKELANI 872
K++ + +KK K K+ +++ G V + +E + A +
Sbjct: 108 QEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQL 154
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_V 4a1c_V 4a1e_V
Length = 239
Score = 37.5 bits (86), Expect = 0.011
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 4/69 (5%)
Query: 818 KQRFNQIAYLDKEKKKKKKKKKKKKKKKKKKKKKKMMKKGYPDVLSQMEKELANINRTAV 877
K ++ K +++K + K++K + K + Y EK++ + R A
Sbjct: 12 KLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEY----EAAEKKIVDEKRKAR 67
Query: 878 APINKPFDK 886
Sbjct: 68 KTGAFYVPA 76
Score = 37.5 bits (86), Expect = 0.011
Identities = 8/45 (17%), Positives = 19/45 (42%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRD 761
+E+ +K K +++K + K++K + K E +
Sbjct: 14 ARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKK 58
Score = 35.9 bits (82), Expect = 0.033
Identities = 10/47 (21%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKY-SNEEEGMRKLRDA 762
++ + E++K + K++K + K +K +Y + E++ + + R A
Sbjct: 20 RKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRKA 66
Score = 33.2 bits (75), Expect = 0.27
Identities = 6/52 (11%), Positives = 20/52 (38%)
Query: 708 RFNQIAYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKL 759
++ K E+ + + K++K + K +K + + + ++
Sbjct: 14 ARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRK 65
Score = 32.8 bits (74), Expect = 0.40
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 719 EEEEKKKKKKKKKKKKKKKKKKKKKKKKKK 748
E +KK + +K +K K +++K + K+
Sbjct: 7 ENVQKKLARDEKLRKAKAEQRKASSAQMKQ 36
Score = 31.3 bits (70), Expect = 1.0
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 723 KKKKKKKKKKKKKKKKKKKKKKKKKK 748
K + +K +K K +++K + K++
Sbjct: 12 KLARDEKLRKAKAEQRKASSAQMKQR 37
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 270
Score = 37.5 bits (86), Expect = 0.013
Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 1/91 (1%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQCGPVKEVPCE 776
+ E K K+ +KK K +K ++K +K +E + R + K
Sbjct: 45 RNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFY 104
Query: 777 -PQIAPCLFDIKNDPCEKNNLADRSEVQRIN 806
P F I+ + R +Q +
Sbjct: 105 VPAEPKLAFVIRIRGINGVSPKVRKVLQLLR 135
Score = 34.5 bits (78), Expect = 0.11
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
Query: 818 KQRFNQIAYLDKEKKKKKKKKKKKKKKKKKKKKKKMMKKGYPDVLSQMEKELANINRTAV 877
K+R + + +KK K +K ++K +K K K Y QM + + R A
Sbjct: 43 KRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEY----RQMYRTEIRMARMAR 98
Query: 878 APINKPFDK 886
N
Sbjct: 99 KAGNFYVPA 107
Score = 33.3 bits (75), Expect = 0.27
Identities = 14/93 (15%), Positives = 30/93 (32%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQCGPVKEVPCE 776
K + KK K +K ++K +K K K+Y ++ A +
Sbjct: 51 KVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPK 110
Query: 777 PQIAPCLFDIKNDPCEKNNLADRSEVQRINHYT 809
+ I + + +++I + T
Sbjct: 111 LAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGT 143
Score = 31.0 bits (69), Expect = 1.4
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 715 PDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKK 748
P E +KK++ + K K+ +KK K +K
Sbjct: 34 PAVPETLKKKRRNFAELKVKRLRKKFALKTLRKA 67
Score = 29.5 bits (65), Expect = 4.5
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 723 KKKKKKKKKKKKKKKKKKKKKKKKKK 748
K++ + K K+ +KK K +K +
Sbjct: 43 KRRNFAELKVKRLRKKFALKTLRKAR 68
>2hvy_B GAR1, small nucleolar RNP similar to GAR1; H/ACA RNA, RNP,
pseudouridine synthase, guide RNA, isomerase
biosynthetic protein-RNA complex; HET: ATP; 2.30A
{Pyrococcus furiosus} SCOP: b.43.3.5 PDB: 3hay_B*
Length = 104
Score = 35.4 bits (81), Expect = 0.014
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 816 DPKQRFNQIAYLDKEKKKKKKKKKKKKKKKKKKKKKK 852
+P+ ++ Y+D+ K+K+ KK K+K+ KKKK+ +
Sbjct: 68 NPEIYVGEVLYVDERKRKESPKKNKEKRMKKKKRLNR 104
Score = 30.0 bits (67), Expect = 1.1
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 720 EEEKKKKKKKKKKKKKKKKKKKKKK 744
+E K+K+ KK K+K+ KKKK+ +
Sbjct: 80 DERKRKESPKKNKEKRMKKKKRLNR 104
Score = 29.6 bits (66), Expect = 1.4
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 723 KKKKKKKKKKKKKKKKKKKKKKKKK 747
++K+K+ KK K+K+ KKKK+ +
Sbjct: 80 DERKRKESPKKNKEKRMKKKKRLNR 104
Score = 29.6 bits (66), Expect = 1.4
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 724 KKKKKKKKKKKKKKKKKKKKKKKKK 748
++K+K+ KK K+K+ KKKK+ +
Sbjct: 80 DERKRKESPKKNKEKRMKKKKRLNR 104
Score = 29.6 bits (66), Expect = 1.4
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 721 EEKKKKKKKKKKKKKKKKKKKKKKK 745
+E+K+K+ KK K+K+ KKKK+ +
Sbjct: 80 DERKRKESPKKNKEKRMKKKKRLNR 104
Score = 29.2 bits (65), Expect = 1.9
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 719 EEEEKKKKKKKKKKKKKKKKKKKKK 743
+E ++K+ KK K+K+ KKKK+ +
Sbjct: 80 DERKRKESPKKNKEKRMKKKKRLNR 104
Score = 28.8 bits (64), Expect = 2.6
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 722 EKKKKKKKKKKKKKKKKKKKKKKKK 746
+++K+K+ KK K+K+ KKKK+ +
Sbjct: 80 DERKRKESPKKNKEKRMKKKKRLNR 104
Score = 28.1 bits (62), Expect = 4.1
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 710 NQIAYPDKEEEEEKKKKKKKKKKKKKKKKKK 740
++ Y D+ + +E KK K+K+ KKKK+ +
Sbjct: 74 GEVLYVDERKRKESPKKNKEKRMKKKKRLNR 104
Score = 28.1 bits (62), Expect = 5.1
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 718 EEEEEKKKKKKKKKKKKKKKKKKKK 742
+E + K+ KK K+K+ KKKK+ +
Sbjct: 80 DERKRKESPKKNKEKRMKKKKRLNR 104
Score = 27.7 bits (61), Expect = 5.6
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKK 741
E + ++ KK K+K+ KKKK+ +
Sbjct: 80 DERKRKESPKKNKEKRMKKKKRLNR 104
Score = 27.7 bits (61), Expect = 7.2
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 728 KKKKKKKKKKKKKKKKKKKKKYSN 751
++K+K+ KK K+K+ KKKK N
Sbjct: 80 DERKRKESPKKNKEKRMKKKKRLN 103
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila}
PDB: 2xzn_8
Length = 143
Score = 35.9 bits (82), Expect = 0.018
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 714 YPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSN 751
P +++ K+ K + KK KKK K K K K ++
Sbjct: 4 QPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDKVNH 41
Score = 32.5 bits (73), Expect = 0.25
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 722 EKKKKKKKKKKKKKKKKKKKKKKKKKKYS 750
++ +KK K+ K + KK KKK++
Sbjct: 3 KQPAAGQKKTKEAIAKAAQAKKGGKKKWT 31
Score = 32.1 bits (72), Expect = 0.30
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 715 PDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKK 748
++K K+ K + KK KKK K K K
Sbjct: 3 KQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAK 36
Score = 32.1 bits (72), Expect = 0.34
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 715 PDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKK 747
+ +KK K+ K + KK KKK K K
Sbjct: 2 GKQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGK 34
Score = 31.3 bits (70), Expect = 0.58
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 723 KKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEE 754
+KK K+ K + KK KKK K +++
Sbjct: 7 AGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDK 38
Score = 29.4 bits (65), Expect = 3.0
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 829 KEKKKKKKKKKKKKKKKKKKKKKKMMKKGYPDVL 862
+KK K+ K + KK KKK K D +
Sbjct: 6 AAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDKV 39
Score = 28.2 bits (62), Expect = 6.2
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 828 DKEKKKKKKKKKKKKKKKKKKKKKKMMK 855
K+ K+ K + KK KKK K K
Sbjct: 9 QKKTKEAIAKAAQAKKGGKKKWTKGKAK 36
Score = 27.8 bits (61), Expect = 8.7
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 828 DKEKKKKKKKKKKKKKKKKKKKKKK 852
++K K+ K + KK KKK K
Sbjct: 8 GQKKTKEAIAKAAQAKKGGKKKWTK 32
Score = 27.8 bits (61), Expect = 8.8
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 828 DKEKKKKKKKKKKKKKKKKKKKKKKM 853
+ K + KK KKK K K K K+
Sbjct: 14 EAIAKAAQAKKGGKKKWTKGKAKDKV 39
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 37.6 bits (87), Expect = 0.018
Identities = 11/58 (18%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNE---EEGMRKLRDAASIQCGPVK 771
K++EEE+++ + + + K+++++++K +K K+ ++ + LR K
Sbjct: 400 KKKEEEERRARMEAQLKEQRERERKMRKAKENSEESGEFDDLVSALRSGEVFDKDLSK 457
Score = 29.1 bits (65), Expect = 8.0
Identities = 5/41 (12%), Positives = 20/41 (48%)
Query: 829 KEKKKKKKKKKKKKKKKKKKKKKKMMKKGYPDVLSQMEKEL 869
+E++ + + + K+++++++K +K + L
Sbjct: 405 EERRARMEAQLKEQRERERKMRKAKENSEESGEFDDLVSAL 445
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H
3o58_H 3o5h_H 3u5e_G 3u5i_G
Length = 256
Score = 36.9 bits (84), Expect = 0.022
Identities = 21/150 (14%), Positives = 39/150 (26%), Gaps = 18/150 (12%)
Query: 723 KKKKKKKKKKKKKKKKKKKKK----KKKKKYSNEEEGMRKLRDAASIQCGPVKEVPCEPQ 778
KK K K K + K + ++ R+ + P + V + Q
Sbjct: 3 PGKKVAPAPFGAKSTKSNKTRNPLTHSTPKNFGIGQAVQPKRNLSRYVKWP-EYVRVQRQ 61
Query: 779 IAPCLFDIKNDPCEKNNLADRSEVQRINHYTTEVGYLDPKQRFNQIAYLDKEKKKKKKKK 838
+K P I + + + F E +KK++
Sbjct: 62 KKILSIRLKVPP-------------TIAQFQYTLDRNTAAETFKLFNKYRPETAAEKKER 108
Query: 839 KKKKKKKKKKKKKKMMKKGYPDVLSQMEKE 868
K+ + K K P +
Sbjct: 109 LTKEAAAVAEGKSKQDASPKPYAVKYGLNH 138
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil,
hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Length = 251
Score = 36.7 bits (84), Expect = 0.023
Identities = 27/151 (17%), Positives = 59/151 (39%), Gaps = 7/151 (4%)
Query: 718 EEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQCGPVKEVPCEP 777
E ++ K K KK++K+ K+ ++K K++ ++ + + + V +
Sbjct: 22 AELQQMKLFLKLLKKQEKELKELERKGSKRREELLQKYSVLFLEPVYPRGLDSQVVELKE 81
Query: 778 QIAPCLFDIKNDPCEKNNLADRSEVQRINHYTTEVGYLDPKQRFNQIAYLDKEKKKKKKK 837
++ L + + D ++ H T + + R QIA L K K+ +
Sbjct: 82 RLEMELIHLGEE------YHDGIRRRKEQHATEQTAKITELAREKQIAEL-KALKESSES 134
Query: 838 KKKKKKKKKKKKKKKMMKKGYPDVLSQMEKE 868
K KKK + K+ ++ + +E
Sbjct: 135 NIKDIKKKLEAKRLDRIQVMMRSTSDKAAQE 165
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 184
Score = 35.7 bits (82), Expect = 0.029
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 9/51 (17%)
Query: 707 GRFNQIAYP---------DKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKK 748
GR N +KE+ K +++ +KKK +KK KK+K ++
Sbjct: 134 GRINPYMSSPCHIEMILTEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE 184
Score = 34.5 bits (79), Expect = 0.075
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 719 EEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNE 752
E+E+ K +++ +KKK +KK KK+K + E
Sbjct: 151 TEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE 184
Score = 31.8 bits (72), Expect = 0.57
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 720 EEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEE 753
E+++ K +++ +KKK +KK KK+K E
Sbjct: 151 TEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE 184
Score = 31.4 bits (71), Expect = 0.85
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 831 KKKKKKKKKKKKKKKKKKKKKKMMKK 856
K +++ +KKK +KK KK+K+M +
Sbjct: 158 PKPEEEVAQKKKISQKKLKKQKLMAR 183
Score = 30.3 bits (68), Expect = 1.8
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 830 EKKKKKKKKKKKKKKKKKKKKKKMMKK 856
K +++ +KKK +KK KK+K M ++
Sbjct: 158 PKPEEEVAQKKKISQKKLKKQKLMARE 184
Score = 29.9 bits (67), Expect = 2.5
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 829 KEKKKKKKKKKKKKKKKKKKKKKKMMKK 856
EK++ K +++ +KKK +KK+ K+
Sbjct: 151 TEKEQIVPKPEEEVAQKKKISQKKLKKQ 178
>2vqe_L 30S ribosomal protein S12, 30S ribosomal protein S6; tRNA-binding,
rRNA-binding, metal-binding, zinc-finger, translation;
HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1
PDB: 1gix_O* 1hnw_L* 1hnx_L* 1hnz_L* 1hr0_L 1ibk_L*
1ibl_L* 1ibm_L 1j5e_L 1jgo_O* 1jgp_O* 1jgq_O* 1mj1_O*
1ml5_O* 1mvr_O 1n32_L* 1n33_L* 1n34_L 1n36_L 1xmo_L* ...
Length = 135
Score = 35.0 bits (80), Expect = 0.031
Identities = 29/131 (22%), Positives = 45/131 (34%), Gaps = 21/131 (16%)
Query: 736 KKKKKKKKKKKKKYSNEEEGMRKLRDAASIQCGPVKEVPCEPQIAPCLFDIKND-----P 790
+K ++K +KK K + + R+ P K ++A + P
Sbjct: 12 RKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRLTSGYEVTAYIP 71
Query: 791 CEKNNLADRSEVQ----RINH-----YTTEVGYLDPKQRFNQIAYLDKEKKKKKKKKKKK 841
E +NL + S V R+ Y G D A + KK + K KK
Sbjct: 72 GEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGVYD-------AAGVKDRKKSRSKYGTKK 124
Query: 842 KKKKKKKKKKK 852
K+ K KK
Sbjct: 125 PKEAAKTAAKK 135
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 37.0 bits (86), Expect = 0.032
Identities = 23/158 (14%), Positives = 62/158 (39%), Gaps = 20/158 (12%)
Query: 716 DKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQCGPVKEVPC 775
K +E+ K+ K +K + + +K + + E +R + A V +
Sbjct: 935 RKIDEQNKEYKSLLEKMNNLEITYSTETEKLRS---DVERLRMSEEEAKNATNRVLSL-- 989
Query: 776 EPQIAPCLFDIKNDPCEKNNLADRSEVQRINHYTTEVGYLDPKQRFNQIAYLDKEKKKKK 835
+ +IA ++ EK + + ++ + + ++ L ++ K
Sbjct: 990 QEEIAKLRKELHQTQTEKKTIEEWADKYK-------------HETEQLVSELKEQNTLLK 1036
Query: 836 KKKKKKKKK--KKKKKKKKMMKKGYPDVLSQMEKELAN 871
+K++ ++ + K+ + M+K + Q+E +L +
Sbjct: 1037 TEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLND 1074
Score = 31.6 bits (72), Expect = 1.4
Identities = 24/192 (12%), Positives = 67/192 (34%), Gaps = 20/192 (10%)
Query: 685 CEKNNLADRSEDQRINHYTTEVGRFNQIAYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKK 744
C + + E +++ V R+ ++ E + + ++K ++ K+ K +K
Sbjct: 895 CCYRRMMAKRELKKLKIEARSVERYKKLHI-GLENKIMQLQRKIDEQNKEYKSLLEKMNN 953
Query: 745 KKKKYSNEEEGMRKLRDAASIQCGPVKEVPCEPQIAPCLFDIKNDPCEKNNLADR--SEV 802
+ YS E E +R + + + KN +L +
Sbjct: 954 LEITYSTETEKLRSDVERLRMSEE----------------EAKNATNRVLSLQEEIAKLR 997
Query: 803 QRINHYTTEVGYLDPKQRFNQIAYLDKEKKKKKKKKKKKKKKKKKKKKKKMMKKGYPDVL 862
+ ++ TE ++ + + K++ K +K++ ++ K + +
Sbjct: 998 KELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETM 1057
Query: 863 SQ-MEKELANIN 873
+ + +E +
Sbjct: 1058 EKKLVEETKQLE 1069
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
1s1i_G
Length = 113
Score = 34.6 bits (79), Expect = 0.032
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 832 KKKKKKKKKKKKKKKKKKKKKMMKKGYPDVLSQMEKELANINRTA 876
K+ + K K+ K +K G V++ +E + A + A
Sbjct: 4 TKEAAAVAEGKSKQDASPKPYAVKYGLNHVVALIENKKAKLVLIA 48
Score = 28.8 bits (64), Expect = 2.9
Identities = 6/29 (20%), Positives = 9/29 (31%)
Query: 724 KKKKKKKKKKKKKKKKKKKKKKKKKYSNE 752
K+ + K K+ K K N
Sbjct: 4 TKEAAAVAEGKSKQDASPKPYAVKYGLNH 32
Score = 28.8 bits (64), Expect = 3.1
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 722 EKKKKKKKKKKKKKKKKKKKKKKKKKKY 749
E+ K+ + K K+ K KY
Sbjct: 1 ERLTKEAAAVAEGKSKQDASPKPYAVKY 28
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 421
Score = 36.4 bits (83), Expect = 0.038
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 715 PDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRK 758
+++ KK ++KK KK KK KK KK + ++ K
Sbjct: 362 SEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADK 405
Score = 35.2 bits (80), Expect = 0.092
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 708 RFNQIAYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKK 748
+ + P K+ +K KK KK KK KK KK
Sbjct: 361 KSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKP 401
Score = 34.5 bits (78), Expect = 0.15
Identities = 18/86 (20%), Positives = 31/86 (36%)
Query: 663 PVKEVPCEPQIAPCLFDIKNDPCEKNNLADRSEDQRINHYTTEVGRFNQIAYPDKEEEEE 722
P K++ L +++ + + R ++ A + + EE
Sbjct: 305 PRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAKNHKLRMDKAAAALEAKSEE 364
Query: 723 KKKKKKKKKKKKKKKKKKKKKKKKKK 748
K KK ++KK KK KK KK
Sbjct: 365 KGVPGKKPRRKKGKKTVGVKKPKKPV 390
Score = 34.5 bits (78), Expect = 0.17
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 715 PDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAA 763
K+ ++ KK KK KK KK KK + ++ + + AA
Sbjct: 373 RRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEKKPAA 421
Score = 34.5 bits (78), Expect = 0.18
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 715 PDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRD 761
+K +K ++KK KK KK KK KK + + +K +
Sbjct: 363 EEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAE 409
Score = 33.3 bits (75), Expect = 0.39
Identities = 13/32 (40%), Positives = 14/32 (43%)
Query: 829 KEKKKKKKKKKKKKKKKKKKKKKKMMKKGYPD 860
+ KK KK KK KK KK KK D
Sbjct: 373 RRKKGKKTVGVKKPKKPVVGKKAAATKKPAAD 404
Score = 33.3 bits (75), Expect = 0.40
Identities = 10/37 (27%), Positives = 13/37 (35%)
Query: 712 IAYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKK 748
+ ++ KK KK KK KK KK
Sbjct: 367 VPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAA 403
Score = 32.5 bits (73), Expect = 0.60
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKK 748
+ EE+ KK ++KK KK KK KK
Sbjct: 360 AKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVV 391
Score = 32.2 bits (72), Expect = 0.84
Identities = 14/42 (33%), Positives = 16/42 (38%)
Query: 829 KEKKKKKKKKKKKKKKKKKKKKKKMMKKGYPDVLSQMEKELA 870
K KK KK KK KK KK + EK+ A
Sbjct: 379 KTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEKKPA 420
Score = 32.2 bits (72), Expect = 0.91
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 828 DKEKKKKKKKKKKKKKKKKKKKKKKMMKKGYPD 860
K+ KK KK KK KK KK +
Sbjct: 383 VKKPKKPVVGKKAAATKKPAADKKPAEKKPTTE 415
Score = 31.8 bits (71), Expect = 1.1
Identities = 10/48 (20%), Positives = 16/48 (33%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAAS 764
++ ++KK KK KK KK KK + +
Sbjct: 366 GVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPT 413
Score = 31.8 bits (71), Expect = 1.1
Identities = 14/51 (27%), Positives = 17/51 (33%)
Query: 809 TTEVGYLDPKQRFNQIAYLDKEKKKKKKKKKKKKKKKKKKKKKKMMKKGYP 859
+ E G K R + KK KK KK KK K + P
Sbjct: 362 SEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKP 412
Score = 31.0 bits (69), Expect = 2.0
Identities = 24/151 (15%), Positives = 46/151 (30%), Gaps = 10/151 (6%)
Query: 730 KKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQCGPVKEVPCEPQIAPCLFDIKND 789
+K +K K Y+ M + ++ P+ +K +
Sbjct: 258 RKLDDLYGTWRKAASLKSNYNLPMHKMLNTDLSRILKMPRDPRALRAPRKKIHRRVLKKN 317
Query: 790 PCEKNNLADRSE-----VQRINHYTTEVGYLDPKQRFNQIAYLDKEKKKKKKKKKKKKKK 844
P + + + ++R + + E+K KK ++KK
Sbjct: 318 PLKNLRIMLKLNPYAKTMRRNTILRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKG 377
Query: 845 K-----KKKKKKKMMKKGYPDVLSQMEKELA 870
K KK KK + KK +K+ A
Sbjct: 378 KKTVGVKKPKKPVVGKKAAATKKPAADKKPA 408
Score = 28.7 bits (63), Expect = 10.0
Identities = 15/133 (11%), Positives = 32/133 (24%), Gaps = 51/133 (38%)
Query: 719 EEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQCGPVKEVPCEPQ 778
++ K K + K + K ++K ++ +K + ++
Sbjct: 337 RNTILRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVK------------ 384
Query: 779 IAPCLFDIKNDPCEKNNLADRSEVQRINHYTTEVGYLDPKQRFNQIAYLDKEKKKKKKKK 838
K + + KK K
Sbjct: 385 ---------------------------------------KPKKPVVGKKAAATKKPAADK 405
Query: 839 KKKKKKKKKKKKK 851
K +KK ++KK
Sbjct: 406 KPAEKKPTTEEKK 418
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_X 2go5_4 2j37_4
Length = 152
Score = 34.5 bits (79), Expect = 0.059
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKK 748
K ++ K ++ K K K K+K KK
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKSGSIKRKSKK 35
Score = 32.9 bits (75), Expect = 0.17
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 715 PDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKK 747
P ++ K ++ K K K K+K KK
Sbjct: 3 PKAAVKKADGKTQQALKVAKAVKSGSIKRKSKK 35
Score = 32.9 bits (75), Expect = 0.18
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 724 KKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMR 757
K KK K ++ K K K + + +R
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKSGSIKRKSKKIR 37
Score = 32.9 bits (75), Expect = 0.20
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 713 AYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYS 750
A ++ + K ++ K K K K+K KK + S
Sbjct: 2 APKAAVKKADGKTQQALKVAKAVKSGSIKRKSKKIRTS 39
Score = 31.8 bits (72), Expect = 0.44
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 834 KKKKKKKKKKKKKKKKKKKMMKKG 857
K KK K ++ K K +K G
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKSG 27
Score = 31.4 bits (71), Expect = 0.72
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 833 KKKKKKKKKKKKKKKKKKKKMMK 855
K KK K ++ K K +
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKS 26
Score = 31.0 bits (70), Expect = 0.81
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 829 KEKKKKKKKKKKKKKKKKKKKKK 851
K KK K ++ K K K
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKS 26
Score = 29.5 bits (66), Expect = 2.7
Identities = 6/22 (27%), Positives = 8/22 (36%)
Query: 831 KKKKKKKKKKKKKKKKKKKKKK 852
KK K ++ K K K
Sbjct: 5 AAVKKADGKTQQALKVAKAVKS 26
Score = 29.5 bits (66), Expect = 2.9
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 831 KKKKKKKKKKKKKKKKKKKKKK 852
K KK K ++ K K K
Sbjct: 4 KAAVKKADGKTQQALKVAKAVK 25
Score = 29.1 bits (65), Expect = 3.4
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 5/31 (16%)
Query: 828 DKEKKKKKKKKKKKKKKKKKK-----KKKKM 853
+K K ++ K K K K KK+
Sbjct: 6 AVKKADGKTQQALKVAKAVKSGSIKRKSKKI 36
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome,
ribosomal R ribosomal protein, STM1, eukaryotic
ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I
2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 1s1i_N 3izc_V 3izs_V
3jyw_N
Length = 184
Score = 34.9 bits (80), Expect = 0.061
Identities = 7/33 (21%), Positives = 17/33 (51%)
Query: 718 EEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYS 750
E+EE K +KK + +++ + +K+ +
Sbjct: 151 TEKEEAVAKAAEKKVVRLTSRQRGRIAAQKRIA 183
Score = 34.5 bits (79), Expect = 0.067
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKK 747
E+EE K +KK + +++ + +K+
Sbjct: 151 TEKEEAVAKAAEKKVVRLTSRQRGRIAAQKR 181
Score = 34.5 bits (79), Expect = 0.072
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 716 DKEEEEEKKKKKKKKKKKKKKKKKKKKKKK 745
+KEE K +KK + +++ + +K+
Sbjct: 152 EKEEAVAKAAEKKVVRLTSRQRGRIAAQKR 181
Score = 30.3 bits (68), Expect = 2.0
Identities = 6/29 (20%), Positives = 15/29 (51%)
Query: 828 DKEKKKKKKKKKKKKKKKKKKKKKKMMKK 856
+KE+ K +KK + +++ + +K
Sbjct: 152 EKEEAVAKAAEKKVVRLTSRQRGRIAAQK 180
Score = 29.1 bits (65), Expect = 3.9
Identities = 5/28 (17%), Positives = 13/28 (46%)
Query: 829 KEKKKKKKKKKKKKKKKKKKKKKKMMKK 856
EK++ K +KK + +++ +
Sbjct: 151 TEKEEAVAKAAEKKVVRLTSRQRGRIAA 178
Score = 28.4 bits (63), Expect = 8.5
Identities = 5/28 (17%), Positives = 13/28 (46%)
Query: 829 KEKKKKKKKKKKKKKKKKKKKKKKMMKK 856
+E K +KK + +++ + K+
Sbjct: 154 EEAVAKAAEKKVVRLTSRQRGRIAAQKR 181
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 297
Score = 35.4 bits (81), Expect = 0.075
Identities = 12/54 (22%), Positives = 24/54 (44%)
Query: 701 HYTTEVGRFNQIAYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEE 754
Y + +K+ ++E KKK+ + K +KK + +KK + +E
Sbjct: 239 MYKKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQE 292
Score = 34.3 bits (78), Expect = 0.14
Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 21/117 (17%)
Query: 666 EVPCEPQIAPCLFDIKNDPCEKNNLADRSEDQRINHYTTEVGRFNQIAY----------- 714
+P + P +D ++ Q + Y + ++ AY
Sbjct: 172 SIPHSTKRFPG-YDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNS 230
Query: 715 --PDKEEEEEKKKKKKKKK----KKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASI 765
PD EE KK ++ +KK KK+ KKK+ + K S + +K R A
Sbjct: 231 VTPDMMEEMYKKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLAQ---KKDRVAQKK 284
Score = 33.1 bits (75), Expect = 0.38
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 713 AYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEG 755
Y K ++E KKK+ + K +KK + +KK +E
Sbjct: 252 VYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQERA 294
Score = 31.6 bits (71), Expect = 1.0
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAA 763
+ EKK KK+ KKK+ + K +KK + + +R AA
Sbjct: 249 ENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQERAA 295
Score = 31.6 bits (71), Expect = 1.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 825 AYLDKEKKKKKKKKKKKKKKKKKKKKKKMMKK 856
Y K KK+ KKK+ + K +KK ++ +K
Sbjct: 252 VYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQK 283
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 35.3 bits (82), Expect = 0.075
Identities = 11/54 (20%), Positives = 26/54 (48%), Gaps = 11/54 (20%)
Query: 712 IAYP-----------DKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEE 754
I +P ++ EEE+ K++K+ + ++++++KK K E+
Sbjct: 207 INFPIYVWSSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEK 260
Score = 34.1 bits (79), Expect = 0.16
Identities = 9/39 (23%), Positives = 22/39 (56%)
Query: 716 DKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEE 754
+ +EE++ + ++++++KK K KK +K + E
Sbjct: 229 EAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWDWEL 267
Score = 33.7 bits (78), Expect = 0.23
Identities = 10/39 (25%), Positives = 23/39 (58%)
Query: 716 DKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEE 754
++ +EEK+ + ++++++KK K KK +K + E
Sbjct: 228 EEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWDWE 266
Score = 31.8 bits (73), Expect = 0.93
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 715 PDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKK 746
KEE+E+ + ++++++KK K KK +K
Sbjct: 230 AAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z
3o58_V 3o5h_V 3u5e_W 3u5i_W 1s1i_S 2x7n_D
Length = 155
Score = 33.9 bits (77), Expect = 0.089
Identities = 20/78 (25%), Positives = 26/78 (33%), Gaps = 4/78 (5%)
Query: 793 KNNLADRSEVQRINHYTTEVGYLDPKQRFNQIAYLDKEKKKKKKKKKKKKKKKKKKKKKK 852
K A R E L P+ R +EK K K+KKK +K +K +K K
Sbjct: 74 KTVKAQRPITGASLDLIKERRSLKPEVRKANR----EEKLKANKEKKKAEKAARKAEKAK 129
Query: 853 MMKKGYPDVLSQMEKELA 870
Q K
Sbjct: 130 SAGTQSSKFSKQQAKGAF 147
Score = 33.2 bits (75), Expect = 0.16
Identities = 11/70 (15%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 687 KNNLADRSEDQRINH---YTTEVGRFNQIAYPDKEEEEEKKKKKKKKKKKKKKKKKKKKK 743
K + + +R + + ++ + + +K +++K K K+KKK +
Sbjct: 60 KKGITEEVAKKRSRKTVKAQRPITGASLDLIKERRSLKPEVRKANREEKLKANKEKKKAE 119
Query: 744 KKKKKYSNEE 753
K +K +
Sbjct: 120 KAARKAEKAK 129
Score = 32.4 bits (73), Expect = 0.31
Identities = 12/55 (21%), Positives = 25/55 (45%)
Query: 715 PDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQCGP 769
P+ + ++K K K+KKK +K +K +K K + + ++ A +
Sbjct: 98 PEVRKANREEKLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKGAFQKVAA 152
Score = 29.7 bits (66), Expect = 2.5
Identities = 9/41 (21%), Positives = 20/41 (48%)
Query: 708 RFNQIAYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKK 748
R ++ ++++ EK +K +K K + K K++ K
Sbjct: 105 REEKLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKG 145
Score = 29.3 bits (65), Expect = 2.9
Identities = 10/47 (21%), Positives = 21/47 (44%)
Query: 713 AYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKL 759
+K + ++KKK +K +K +K K + K + +K+
Sbjct: 104 NREEKLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKGAFQKV 150
Score = 28.9 bits (64), Expect = 4.1
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 829 KEKKKKKKKKKKKKKKKKKKKKKKMMKKGYPDV 861
EK +K +K K + K K+ K + V
Sbjct: 118 AEKAARKAEKAKSAGTQSSKFSKQQAKGAFQKV 150
Score = 28.9 bits (64), Expect = 4.8
Identities = 18/84 (21%), Positives = 32/84 (38%)
Query: 787 KNDPCEKNNLADRSEVQRINHYTTEVGYLDPKQRFNQIAYLDKEKKKKKKKKKKKKKKKK 846
K E+ + + T K+R + + K +++K K K+KKK +
Sbjct: 60 KKGITEEVAKKRSRKTVKAQRPITGASLDLIKERRSLKPEVRKANREEKLKANKEKKKAE 119
Query: 847 KKKKKKMMKKGYPDVLSQMEKELA 870
K +K K S+ K+ A
Sbjct: 120 KAARKAEKAKSAGTQSSKFSKQQA 143
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 34.5 bits (78), Expect = 0.091
Identities = 8/55 (14%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 716 DKEEEEEKKKKKKKKKKKK-----KKKKKKKKKKKKKKYSNEEEGMRKLRDAASI 765
+ + + +++ ++K KK +++ ++ +K K ++ + DA I
Sbjct: 115 ELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADII 169
Score = 31.4 bits (70), Expect = 0.96
Identities = 7/42 (16%), Positives = 21/42 (50%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRK 758
+E+ + ++ K +++ ++K KK ++ + E + K
Sbjct: 107 EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEK 148
Score = 28.7 bits (63), Expect = 6.1
Identities = 5/40 (12%), Positives = 21/40 (52%)
Query: 715 PDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEE 754
+E E +K +++++K+ ++ K ++++ + +
Sbjct: 93 DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAK 132
Score = 28.3 bits (62), Expect = 8.5
Identities = 11/48 (22%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 829 KEKKKKKKKKKKKKKKKKKKKKKKMMKKGYPDVLSQMEKELANINRTA 876
+++ ++ K +++ ++K KK +++ Q+EK N NR A
Sbjct: 110 RKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKIN-NRIA 156
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A
{Aquifex aeolicus} SCOP: d.27.1.1
Length = 112
Score = 33.1 bits (76), Expect = 0.10
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKK 748
KE E + K+ +K++ KK K +
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 32.7 bits (75), Expect = 0.11
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 716 DKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKK 747
+ E + K+ +K++ KK K +
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 31.9 bits (73), Expect = 0.24
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 714 YPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKK 746
+ E + K+ +K++ KK K +
Sbjct: 79 LKEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 31.5 bits (72), Expect = 0.30
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 712 IAYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKK 745
I E E K+ +K++ KK K +
Sbjct: 78 ILKEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 30.4 bits (69), Expect = 0.75
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 723 KKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEG 755
K+ + + K+ +K++ KK E
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGEAA 112
Score = 30.0 bits (68), Expect = 1.2
Identities = 5/31 (16%), Positives = 13/31 (41%)
Query: 722 EKKKKKKKKKKKKKKKKKKKKKKKKKKYSNE 752
++ + + K+ +K++ KK E
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGE 110
Score = 28.8 bits (65), Expect = 3.2
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 830 EKKKKKKKKKKKKKKKKKKKKKK 852
E K+ +K++ KK K +
Sbjct: 88 EMKRVGDYYVFEKRESKKSKGGE 110
Score = 28.5 bits (64), Expect = 3.5
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 827 LDKEKKKKKKKKKKKKKKKKKKKKKKMMKKG 857
L + + + K+ +K++ K K G
Sbjct: 79 LKEVVPEGYEMKRVGDYYVFEKRESKKSKGG 109
Score = 28.5 bits (64), Expect = 3.7
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 829 KEKKKKKKKKKKKKKKKKKKKKKKMMKKG 857
E + K+ +K++ KK K +
Sbjct: 84 PEGYEMKRVGDYYVFEKRESKKSKGGEAA 112
>3izc_K 60S ribosomal protein RPL16 (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_K
3o58_P 3o5h_P 3u5e_O 3u5i_O
Length = 199
Score = 34.2 bits (78), Expect = 0.13
Identities = 15/72 (20%), Positives = 27/72 (37%), Gaps = 3/72 (4%)
Query: 691 ADRSEDQRINHYTTEVGRFNQI---AYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKK 747
A R + T +G+ + Y D + E K+K + KK+ KK
Sbjct: 123 ALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEAKRKVSSAEYYAKKRAFTKKVASAN 182
Query: 748 KYSNEEEGMRKL 759
+ E + ++L
Sbjct: 183 ATAAESDVAKQL 194
Score = 30.7 bits (69), Expect = 1.4
Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 6/75 (8%)
Query: 797 ADRSEVQRINHYTTEVGYLDPKQRFNQIAYLDKEKKKKKKK------KKKKKKKKKKKKK 850
A R + T +G L + + K + K+K KK+ KK
Sbjct: 123 ALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEAKRKVSSAEYYAKKRAFTKKVASAN 182
Query: 851 KKMMKKGYPDVLSQM 865
+ L+ +
Sbjct: 183 ATAAESDVAKQLAAL 197
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 3u5i_D 3izc_Q 3izs_Q
3o58_E 3o5h_E 3jyw_E 1s1i_E
Length = 297
Score = 34.3 bits (78), Expect = 0.13
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 721 EEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQ 766
+ K +KK K++ + KK ++ K S EE R R AA I
Sbjct: 249 ADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEE---RAARVAAKIA 291
Score = 30.4 bits (68), Expect = 2.4
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 829 KEKKKKKKKKKKKKKKKKKKKKKKM 853
+ +KK K++ + KK ++ K+
Sbjct: 253 FKPTEKKFTKEQYAAESKKYRQTKL 277
Score = 28.5 bits (63), Expect = 9.5
Identities = 6/42 (14%), Positives = 17/42 (40%)
Query: 713 AYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEE 754
+E+ + KK ++ K K+++ + K ++
Sbjct: 256 TEKKFTKEQYAAESKKYRQTKLSKEERAARVAAKIAALAGQQ 297
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F
alternative rescue factor, ARFB, release factor, rescue
of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Length = 140
Score = 33.2 bits (76), Expect = 0.15
Identities = 7/48 (14%), Positives = 17/48 (35%)
Query: 707 GRFNQIAYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEE 754
++ K + + K+++ K +K K + K + E
Sbjct: 93 AMIKELTTEKKARRPTRPTRASKERRLASKAQKSSVKAMRGKVRSGRE 140
Score = 28.6 bits (64), Expect = 4.8
Identities = 5/39 (12%), Positives = 16/39 (41%)
Query: 818 KQRFNQIAYLDKEKKKKKKKKKKKKKKKKKKKKKKMMKK 856
++ K ++ + + K+++ K +K +K
Sbjct: 92 VAMIKELTTEKKARRPTRPTRASKERRLASKAQKSSVKA 130
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_T 4a1c_T 4a1e_T
Length = 158
Score = 33.2 bits (75), Expect = 0.17
Identities = 9/57 (15%), Positives = 22/57 (38%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQCGPVKEV 773
+ +K + +K ++ K+KK +KK+ + ++ + PV
Sbjct: 98 LDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVGAK 154
Score = 30.9 bits (69), Expect = 0.88
Identities = 11/50 (22%), Positives = 21/50 (42%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQ 766
K + KK + +K ++ K+KK +KK+ + K A +
Sbjct: 96 KNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETK 145
Score = 30.9 bits (69), Expect = 0.89
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKK 748
++ + KK + +K ++ K+KK +KK+
Sbjct: 95 RKNLDASHKKAEAEKAVRELKQKKANDIEKKR 126
Score = 30.9 bits (69), Expect = 0.93
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 710 NQIAYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRK 758
N A K E E+ ++ K+KK +KK+ +K + K ++ K
Sbjct: 97 NLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETK 145
Score = 30.9 bits (69), Expect = 1.0
Identities = 10/48 (20%), Positives = 19/48 (39%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAAS 764
+ KK + +K ++ K+KK +K + + K AA
Sbjct: 93 NRRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAK 140
Score = 30.9 bits (69), Expect = 1.1
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 829 KEKKKKKKKKKKKKKKKKKKKKKKMMKK 856
K+KK +KK+ +K + K K K
Sbjct: 115 KQKKANDIEKKRADRKLQGKDVKAAKKA 142
Score = 30.5 bits (68), Expect = 1.3
Identities = 13/64 (20%), Positives = 24/64 (37%)
Query: 793 KNNLADRSEVQRINHYTTEVGYLDPKQRFNQIAYLDKEKKKKKKKKKKKKKKKKKKKKKK 852
+N R+ V LD + + +E K+KK +KK+ +K + K
Sbjct: 76 RNVTVARAIVGISLEEINRRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKD 135
Query: 853 MMKK 856
+
Sbjct: 136 VKAA 139
Score = 30.5 bits (68), Expect = 1.3
Identities = 10/56 (17%), Positives = 27/56 (48%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQCGPVKE 772
+ + + KK + +K ++ K+KK +KK ++ + + ++ A + K+
Sbjct: 94 RRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQ 149
Score = 30.1 bits (67), Expect = 1.7
Identities = 8/53 (15%), Positives = 19/53 (35%)
Query: 818 KQRFNQIAYLDKEKKKKKKKKKKKKKKKKKKKKKKMMKKGYPDVLSQMEKELA 870
+ ++ K+KK +KK+ +K + K ++ K+
Sbjct: 99 DASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPV 151
Score = 29.7 bits (66), Expect = 2.7
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKK 748
+ + + K K KK + KK K+ K KK
Sbjct: 127 ADRKLQGKDVKAAKKAETKKTKQPVGAKGGKK 158
Score = 29.4 bits (65), Expect = 3.0
Identities = 10/48 (20%), Positives = 23/48 (47%)
Query: 716 DKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAA 763
E E+ ++ K+KK +KK+ +K + K + ++ +K +
Sbjct: 104 KAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPV 151
Score = 29.4 bits (65), Expect = 3.5
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 818 KQRFNQIAYLDKEKKKKKKKKKKKKKKKKKKKKKKMMKKGYPDVLSQMEKE 868
+R N A K + +K ++ K+KK +KK+ K DV + + E
Sbjct: 93 NRRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAE 143
Score = 28.2 bits (62), Expect = 8.3
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 829 KEKKKKKKKKKKKKKKKKKKKKKKMMKKG 857
++K + K K KK + KK K+ + KG
Sbjct: 127 ADRKLQGKDVKAAKKAETKKTKQPVGAKG 155
>1v3y_A Peptide deformylase; protein synthesis, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, hydrolase; 1.81A {Thermus thermophilus} SCOP:
d.167.1.1
Length = 192
Score = 33.3 bits (77), Expect = 0.18
Identities = 5/31 (16%), Positives = 17/31 (54%)
Query: 826 YLDKEKKKKKKKKKKKKKKKKKKKKKKMMKK 856
L K K++ + + + + +K+ + ++K+
Sbjct: 158 RLPKPKREAFLEANRAELVRFQKEARALLKE 188
Score = 28.3 bits (64), Expect = 9.5
Identities = 4/31 (12%), Positives = 13/31 (41%)
Query: 715 PDKEEEEEKKKKKKKKKKKKKKKKKKKKKKK 745
K E + + + + +K+ + K+ +
Sbjct: 161 KPKREAFLEANRAELVRFQKEARALLKELSQ 191
>3iz5_D 60S ribosomal protein L4 (L4P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_D
Length = 405
Score = 34.4 bits (78), Expect = 0.18
Identities = 25/128 (19%), Positives = 43/128 (33%), Gaps = 12/128 (9%)
Query: 730 KKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQCGPVKEVPCEPQIAPCLFDIKND 789
KK ++ + KKK + M I V+ V + P ++K
Sbjct: 263 KKLEEVYGTFEAPSLKKKGFILPRPKMANADLGRIINSDEVQSV-----VKPLNKEVKRR 317
Query: 790 PCEKNNLADRSEVQRINHYTTEVGYLDPKQRFNQIAYLDKEKKKKKKKKKKKKKKKKKKK 849
KN L + + V ++N Y R K +K+K K+ K ++
Sbjct: 318 EKRKNPLKNVAAVLKLNPYF-------GTARKMATLAEAARIKARKEKLDSKRTKLSPEE 370
Query: 850 KKKMMKKG 857
K+ G
Sbjct: 371 AAKVKAAG 378
Score = 32.1 bits (72), Expect = 0.87
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 687 KNNLADRSEDQRINHYTTEVGRFNQIAYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKK 746
KN L + + ++N Y + +A E + K +K+K K+ K ++ K
Sbjct: 321 KNPLKNVAAVLKLNPYFGTARKMATLA------EAARIKARKEKLDSKRTKLSPEEAAKV 374
Query: 747 KK 748
K
Sbjct: 375 KA 376
Score = 28.7 bits (63), Expect = 9.3
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 724 KKKKKKKKKKKKKKKKKKKKKKKKKYSNEE 753
+K + + K +K+K K+ K S EE
Sbjct: 341 RKMATLAEAARIKARKEKLDSKRTKLSPEE 370
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase,
microtubule, RB3, stath tubulin, cell cycle; HET: GTP
GDP; 4.17A {Artificial gene}
Length = 240
Score = 33.8 bits (76), Expect = 0.19
Identities = 17/136 (12%), Positives = 50/136 (36%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQCGPVKEVPCE 776
K +E+ +K + K+ ++ ++ ++K + EE ++ + + KE +
Sbjct: 92 KMAKEKLAQKMESNKENREAHFAAMLERLQEKDKHAEEVRQRAIEENNNWIKMAKEKLAQ 151
Query: 777 PQIAPCLFDIKNDPCEKNNLADRSEVQRINHYTTEVGYLDPKQRFNQIAYLDKEKKKKKK 836
+ + +LA++ E +R + + + E K+ +
Sbjct: 152 KMESNKENRKYQEAELLKHLAEKREHEREVIQRAIEENNNWIKMAKEKLAQKMESNKENR 211
Query: 837 KKKKKKKKKKKKKKKK 852
+ ++ ++K K
Sbjct: 212 EAHFAAMLERLQEKDK 227
Score = 30.3 bits (67), Expect = 2.3
Identities = 17/139 (12%), Positives = 50/139 (35%), Gaps = 19/139 (13%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQCGPVKEVPCE 776
+E+++ ++ +++ ++ K K+K +K + +E + +E E
Sbjct: 121 QEKDKHAEEVRQRAIEENNNWIKMAKEKLAQKMESNKENRKYQEAELLKHLAEKREHERE 180
Query: 777 PQIAPCLFDIKNDPCEKNNLADRSEVQRINHYTTEVGYLDPKQRFNQIAYLDKEKKKKKK 836
E+NN + +++ K N+ ++
Sbjct: 181 VI---------QRAIEENNNWIKMAKEKLAQ----------KMESNKENREAHFAAMLER 221
Query: 837 KKKKKKKKKKKKKKKKMMK 855
++K K ++ +K K++ +
Sbjct: 222 LQEKDKHAEEVRKNKELKE 240
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 33.1 bits (76), Expect = 0.20
Identities = 4/29 (13%), Positives = 11/29 (37%)
Query: 828 DKEKKKKKKKKKKKKKKKKKKKKKKMMKK 856
++ K +++ +KK + K
Sbjct: 130 AASVVAREMKIVTERRAEKKADSRVTYSK 158
Score = 30.4 bits (69), Expect = 1.3
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 829 KEKKKKKKKKKKKKKKKKKKKKKKMMK 855
+ K +++ +KK + KM +
Sbjct: 135 AREMKIVTERRAEKKADSRVTYSKMFQ 161
Score = 30.4 bits (69), Expect = 1.4
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 724 KKKKKKKKKKKKKKKKKKKKKKKKKYSN 751
++ K +++ +KK + YS
Sbjct: 131 ASVVAREMKIVTERRAEKKADSRVTYSK 158
Score = 27.7 bits (62), Expect = 9.7
Identities = 4/32 (12%), Positives = 11/32 (34%)
Query: 716 DKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKK 747
++ K +++ +KK + K
Sbjct: 127 HPAAASVVAREMKIVTERRAEKKADSRVTYSK 158
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 34.4 bits (78), Expect = 0.22
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 12/88 (13%)
Query: 713 AYPDKEEEEEKKKKKK------------KKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLR 760
+YP EE K+ +K K + KK KK+K +++KKK E+E R+
Sbjct: 794 SYPRMYEEASGKEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETN 853
Query: 761 DAASIQCGPVKEVPCEPQIAPCLFDIKN 788
+ E + + + + + N
Sbjct: 854 KKGIKETKENDEEFYKNKYSSKPYKVDN 881
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 203
Score = 33.1 bits (75), Expect = 0.25
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 718 EEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRK 758
EEK+K+K K +KKK+ + +K+ +K + + +
Sbjct: 154 ATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTE 194
Score = 30.4 bits (68), Expect = 2.0
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 830 EKKKKKKKKKKKKKKKKKKKKKKMMKKGYPDVLSQMEKELAN 871
E+K+K+K K +KKK+ + +K +K + + + L
Sbjct: 157 EEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVLKT 198
Score = 30.0 bits (67), Expect = 2.4
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 714 YPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKK 748
Y E+K+K+K K +KKK+ + +K+ +K
Sbjct: 149 YQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEK 183
Score = 29.2 bits (65), Expect = 4.7
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 698 RINHYTTEVGRFNQIAYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKK 748
+ EVG Q EE+ ++K K +KKK+ + +K+ +K +K
Sbjct: 137 YLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEK 187
Score = 28.4 bits (63), Expect = 8.0
Identities = 13/65 (20%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 691 ADRSEDQRINHYTTEVGRF-NQIAYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKY 749
A + + +GR +++ + + ++K+K+K K +KKK+ + +K+
Sbjct: 123 ALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAE 182
Query: 750 SNEEE 754
N E+
Sbjct: 183 KNVEK 187
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 157
Score = 32.7 bits (74), Expect = 0.25
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEG 755
+ +E KK K+ KK K K K+K +
Sbjct: 110 RAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKV 148
Score = 32.0 bits (72), Expect = 0.40
Identities = 8/32 (25%), Positives = 19/32 (59%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKK 748
K ++ + +K ++++ + K+ KK K+ KK
Sbjct: 93 KRNQKPEVRKAQREQAIRAAKEAKKAKQASKK 124
Score = 32.0 bits (72), Expect = 0.41
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKK 748
K E + ++++ + K+ KK K+ KK
Sbjct: 97 KPEVRKAQREQAIRAAKEAKKAKQASKKTAMA 128
Score = 32.0 bits (72), Expect = 0.44
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMR 757
K ++ KK K K K+K K K + G R
Sbjct: 117 KAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGKR 157
Score = 31.6 bits (71), Expect = 0.59
Identities = 9/44 (20%), Positives = 19/44 (43%)
Query: 715 PDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRK 758
P+ + + ++ + K+ KK K+ KK K + +K
Sbjct: 98 PEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQK 141
Score = 31.2 bits (70), Expect = 0.71
Identities = 10/34 (29%), Positives = 12/34 (35%)
Query: 828 DKEKKKKKKKKKKKKKKKKKKKKKKMMKKGYPDV 861
KK K K K+K K +K P V
Sbjct: 120 QASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRV 153
Score = 31.2 bits (70), Expect = 0.85
Identities = 10/56 (17%), Positives = 19/56 (33%)
Query: 817 PKQRFNQIAYLDKEKKKKKKKKKKKKKKKKKKKKKKMMKKGYPDVLSQMEKELANI 872
P+ R Q + K+ KK K+ KK K ++ ++ +
Sbjct: 98 PEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRV 153
Score = 31.2 bits (70), Expect = 0.86
Identities = 9/42 (21%), Positives = 21/42 (50%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRK 758
+ ++ E +K ++++ + K+ KK K+ KK + K
Sbjct: 94 RNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTK 135
Score = 30.8 bits (69), Expect = 1.0
Identities = 8/47 (17%), Positives = 20/47 (42%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAA 763
++ E K ++++ + K+ KK K+ KK + + +
Sbjct: 96 QKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKI 142
Score = 30.8 bits (69), Expect = 1.1
Identities = 8/49 (16%), Positives = 20/49 (40%)
Query: 718 EEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQ 766
E + ++++ + K+ KK K+ KK + K + ++
Sbjct: 99 EVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVK 147
Score = 30.4 bits (68), Expect = 1.5
Identities = 7/50 (14%), Positives = 22/50 (44%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQ 766
+ ++ + +K ++++ + K+ KK K+ K + + A +
Sbjct: 92 AKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQK 141
Score = 30.0 bits (67), Expect = 1.7
Identities = 10/53 (18%), Positives = 24/53 (45%)
Query: 818 KQRFNQIAYLDKEKKKKKKKKKKKKKKKKKKKKKKMMKKGYPDVLSQMEKELA 870
+ NQ + K ++++ + K+ KK K+ KK M + ++++
Sbjct: 91 MAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIV 143
Score = 30.0 bits (67), Expect = 1.9
Identities = 8/38 (21%), Positives = 13/38 (34%)
Query: 721 EEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRK 758
K+ KK K+ KK K K + ++
Sbjct: 111 AAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKV 148
Score = 30.0 bits (67), Expect = 2.2
Identities = 6/32 (18%), Positives = 17/32 (53%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKK 748
+ +K + +K ++++ + K+ KK K+
Sbjct: 91 MAKRNQKPEVRKAQREQAIRAAKEAKKAKQAS 122
Score = 29.6 bits (66), Expect = 2.3
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 716 DKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKK 748
+ ++ ++ KK K K K+K K
Sbjct: 114 EAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPV 146
Score = 29.6 bits (66), Expect = 2.4
Identities = 11/49 (22%), Positives = 17/49 (34%)
Query: 710 NQIAYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRK 758
NQ K + E+ + K+ KK K+ KK K +
Sbjct: 95 NQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIV 143
Score = 29.6 bits (66), Expect = 2.5
Identities = 9/43 (20%), Positives = 18/43 (41%)
Query: 716 DKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRK 758
+ E+ + K+ KK K+ KK K + ++ + K
Sbjct: 102 KAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVK 144
Score = 28.9 bits (64), Expect = 4.1
Identities = 9/42 (21%), Positives = 21/42 (50%)
Query: 723 KKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAAS 764
+ K+ KK K+ KK K K + +++ ++ ++ +A
Sbjct: 110 RAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAP 151
Score = 28.9 bits (64), Expect = 5.0
Identities = 8/41 (19%), Positives = 12/41 (29%)
Query: 708 RFNQIAYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKK 748
+ ++ KK K+ KK K K K
Sbjct: 99 EVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPK 139
Score = 28.5 bits (63), Expect = 5.8
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 708 RFNQIAYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKK 748
R I + ++ ++ KK K K K+K K
Sbjct: 105 REQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKP 145
Score = 28.1 bits (62), Expect = 9.4
Identities = 7/48 (14%), Positives = 20/48 (41%)
Query: 719 EEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQ 766
+ +K + +K ++++ + K+ KK K+ S + +
Sbjct: 91 MAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAP 138
>4a18_L RPL34; ribosome, eukaryotic initiation factor 6, EIF6, transla
large ribosomal subunit, rRNA; 3.52A {Tetrahymena
thermophila} PDB: 4a19_L 4a1b_L 4a1d_L 4adx_4
Length = 123
Score = 31.9 bits (72), Expect = 0.25
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 720 EEEKKKKKKKKKKKKKKKKKKKKKKK 745
EE K K+K K K KKKK+ +KK
Sbjct: 98 EEVKIVKRKMISKPKTDKKKKRSQKK 123
Score = 31.2 bits (70), Expect = 0.48
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 721 EEKKKKKKKKKKKKKKKKKKKKKKKK 746
EE K K+K K K KKKK+ +KK
Sbjct: 98 EEVKIVKRKMISKPKTDKKKKRSQKK 123
Score = 30.4 bits (68), Expect = 0.92
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 825 AYLDKEKK--KKKKKKKKKKKKKKKKKKKK 852
A+L +E K K+K K K KKKK+ +KK
Sbjct: 94 AFLTEEVKIVKRKMISKPKTDKKKKRSQKK 123
Score = 30.0 bits (67), Expect = 1.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 719 EEEEKKKKKKKKKKKKKKKKKKKKKK 744
EE + K+K K K KKKK+ +KK
Sbjct: 98 EEVKIVKRKMISKPKTDKKKKRSQKK 123
Score = 30.0 bits (67), Expect = 1.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 718 EEEEEKKKKKKKKKKKKKKKKKKKKK 743
EE + K+K K K KKKK+ +KK
Sbjct: 98 EEVKIVKRKMISKPKTDKKKKRSQKK 123
Score = 29.6 bits (66), Expect = 1.8
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 722 EKKKKKKKKKKKKKKKKKKKKKKKKK 747
E+ K K+K K K KKKK+ +KK
Sbjct: 98 EEVKIVKRKMISKPKTDKKKKRSQKK 123
Score = 28.5 bits (63), Expect = 4.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 713 AYPDKEEEEEKKKKKKKKKKKKKKKKKKKK 742
A+ +E + K+K K K KKKK+ +KK
Sbjct: 94 AFLTEEVKIVKRKMISKPKTDKKKKRSQKK 123
Score = 28.1 bits (62), Expect = 5.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 723 KKKKKKKKKKKKKKKKKKKKKKKKKK 748
++ K K+K K K KKKK+ +KK
Sbjct: 98 EEVKIVKRKMISKPKTDKKKKRSQKK 123
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein
transport; 2.80A {Homo sapiens} PDB: 3frv_A
Length = 179
Score = 32.8 bits (74), Expect = 0.26
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 816 DPKQRFNQI-AYLDKEKKK--KKKKKKKKKKKKKKKKKKKMMKKGYPDVLSQMEKELANI 872
PK+ N+ + KE + ++ + +++++K K+ K KKG DV + KE+
Sbjct: 7 PPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRS 66
Query: 873 NR 874
+
Sbjct: 67 RK 68
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A
{Saccharomyces cerevisiae} SCOP: e.15.1.1
Length = 223
Score = 33.3 bits (76), Expect = 0.27
Identities = 8/39 (20%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 821 FNQI-AYLDKEKKKKKKKKKKKKKKKKKKKKKKMMKKGY 858
F ++ Y +K++KK+ ++KK+ + +++K +
Sbjct: 94 FTKMFDYFQLQKEQKKQLTSQEKKQIRLEREKFEEDYKF 132
Score = 31.8 bits (72), Expect = 0.79
Identities = 7/29 (24%), Positives = 21/29 (72%)
Query: 721 EEKKKKKKKKKKKKKKKKKKKKKKKKKKY 749
+ +K++KK+ ++KK+ + +++K ++ Y
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEEDY 130
Score = 29.1 bits (65), Expect = 4.9
Identities = 6/28 (21%), Positives = 20/28 (71%)
Query: 720 EEEKKKKKKKKKKKKKKKKKKKKKKKKK 747
+ +K++KK+ ++KK+ + +++K ++
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 28.7 bits (64), Expect = 6.2
Identities = 6/28 (21%), Positives = 20/28 (71%)
Query: 718 EEEEEKKKKKKKKKKKKKKKKKKKKKKK 745
+ ++E+KK+ ++KK+ + +++K ++
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP,
IST1, coiled coil, cytoplasm, lipoprotein, membrane,
myristate, phosphoprotein; 4.00A {Homo sapiens}
Length = 218
Score = 33.2 bits (75), Expect = 0.28
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 816 DPKQRFNQ-IAYLDKEKKK--KKKKKKKKKKKKKKKKKKKMMKKGYPDVLSQMEKELANI 872
PK+ N+ + KE + ++ + +++++K K+ K KKG DV + KE+
Sbjct: 7 PPKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRS 66
Query: 873 NR 874
+
Sbjct: 67 RK 68
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 33.9 bits (78), Expect = 0.29
Identities = 8/41 (19%), Positives = 21/41 (51%)
Query: 726 KKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQ 766
+++ KK+KK+ + KKK + E ++ + +++
Sbjct: 476 IEQEPSKKQKKQHEGSKKKAAARDVTLENRLQNMEVTDALE 516
Score = 33.2 bits (76), Expect = 0.41
Identities = 11/47 (23%), Positives = 23/47 (48%)
Query: 715 PDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRD 761
P +E K +++ KK+KK+ + KKK + + +L++
Sbjct: 462 PGLQELIPFVKPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQN 508
Score = 30.8 bits (70), Expect = 2.3
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 719 EEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMR 757
+ +++ KK+KK+ + KKK + N + M
Sbjct: 472 KPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQNME 510
Score = 29.3 bits (66), Expect = 7.6
Identities = 7/36 (19%), Positives = 18/36 (50%)
Query: 831 KKKKKKKKKKKKKKKKKKKKKKMMKKGYPDVLSQME 866
K +++ KK+KK+ + KK + ++++
Sbjct: 472 KPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQ 507
Score = 28.9 bits (65), Expect = 8.8
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 829 KEKKKKKKKKKKKKKKKKKKKKKKMMKKG 857
K +++ KK+KK+ + KKK +
Sbjct: 472 KPAPIEQEPSKKQKKQHEGSKKKAAARDV 500
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 33.7 bits (78), Expect = 0.31
Identities = 11/41 (26%), Positives = 14/41 (34%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMR 757
E K+ K KK K K K K + + G R
Sbjct: 439 PEFIPYIKELPKNTTSVKKAKGKNPKNTTSVKKAKGKNGSR 479
Score = 29.1 bits (66), Expect = 7.3
Identities = 11/35 (31%), Positives = 13/35 (37%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSN 751
KE + KK K K K KK K K +
Sbjct: 446 KELPKNTTSVKKAKGKNPKNTTSVKKAKGKNGSRH 480
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2;
I-BAR, protein binding; 2.25A {Mus musculus}
Length = 222
Score = 32.9 bits (74), Expect = 0.33
Identities = 11/68 (16%), Positives = 31/68 (45%)
Query: 810 TEVGYLDPKQRFNQIAYLDKEKKKKKKKKKKKKKKKKKKKKKKMMKKGYPDVLSQMEKEL 869
++ ++ + +I Y + +K + + ++K+ K + MK+ + +QM+ +
Sbjct: 112 LDMQFIKDSCQHYEIEYRHRAANLEKCMSELWRMERKRDKNAREMKESVNRLHAQMQAFV 171
Query: 870 ANINRTAV 877
+ R A
Sbjct: 172 SESKRAAE 179
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 190
Score = 32.5 bits (73), Expect = 0.34
Identities = 5/41 (12%), Positives = 22/41 (53%)
Query: 721 EEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRD 761
E + +K+K ++ K+ ++++ + + N+++ ++
Sbjct: 134 ENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQE 174
Score = 30.6 bits (68), Expect = 1.4
Identities = 5/43 (11%), Positives = 23/43 (53%)
Query: 826 YLDKEKKKKKKKKKKKKKKKKKKKKKKMMKKGYPDVLSQMEKE 868
+ + + +K+K ++ K+ ++++ + + + DV + ++
Sbjct: 133 FENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEA 175
Score = 30.6 bits (68), Expect = 1.6
Identities = 5/41 (12%), Positives = 18/41 (43%)
Query: 721 EEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRD 761
+ +K+K ++ K+ ++++ + + + K D
Sbjct: 138 DVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDD 178
Score = 30.2 bits (67), Expect = 2.4
Identities = 4/37 (10%), Positives = 18/37 (48%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEE 753
++ K+K ++ K+ ++++ + + + K+
Sbjct: 135 NTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPAT 171
Score = 29.5 bits (65), Expect = 4.2
Identities = 3/41 (7%), Positives = 22/41 (53%)
Query: 714 YPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEE 754
+ + ++ ++K ++ K+ ++++ + + + K+ ++
Sbjct: 133 FENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQ 173
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Q
Length = 304
Score = 33.1 bits (75), Expect = 0.38
Identities = 16/119 (13%), Positives = 29/119 (24%), Gaps = 22/119 (18%)
Query: 666 EVPCEPQIAPCLFDIKNDPCEKNNLADRSEDQRINHYTTEVGRFNQIAY----------- 714
++P + F + + + Y + +
Sbjct: 172 DIPHSDKRFAG-FKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKG 230
Query: 715 --PDKEEEEEKKKKKK-----KKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQ 766
D E KK K KK+ K+ KK + E+ RK +
Sbjct: 231 IDADGMESLYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQ---RKASLVERLN 286
Score = 30.0 bits (67), Expect = 3.6
Identities = 5/42 (11%), Positives = 15/42 (35%)
Query: 713 AYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEE 754
++E K+ KK +++K ++ ++
Sbjct: 252 TMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAG 293
Score = 29.2 bits (65), Expect = 6.1
Identities = 6/46 (13%), Positives = 15/46 (32%), Gaps = 5/46 (10%)
Query: 714 YPDKEEEEEKKKKKKKKKKK-----KKKKKKKKKKKKKKKYSNEEE 754
K ++E K+ KK +K ++ +++
Sbjct: 252 TMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGADDD 297
Score = 28.9 bits (64), Expect = 7.5
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 829 KEKKKKKKKKKKKKKKKKKKKKKKM 853
+ K KK+ K+ KK+
Sbjct: 248 RADPTMAKSTKKEPATHKRYNLKKL 272
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Z
Length = 162
Score = 32.0 bits (72), Expect = 0.40
Identities = 10/48 (20%), Positives = 20/48 (41%)
Query: 829 KEKKKKKKKKKKKKKKKKKKKKKKMMKKGYPDVLSQMEKELANINRTA 876
+ ++ K++ KK K +KK KK ++ K + A +
Sbjct: 109 EAALREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRGAKGPKIG 156
Score = 31.6 bits (71), Expect = 0.56
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKK 748
K E + ++ ++ K++ KK K +KK KK
Sbjct: 100 KPEVRDAAREAALREIKERIKKTKDEKKAKKA 131
Score = 30.8 bits (69), Expect = 0.99
Identities = 8/42 (19%), Positives = 22/42 (52%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRK 758
+ + ++ ++ K++ KK K +KK KK + +++ +
Sbjct: 102 EVRDAAREAALREIKERIKKTKDEKKAKKAEVAKSQKTQSKG 143
Score = 30.8 bits (69), Expect = 1.0
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEE 753
K E+ + + ++ ++ K++ KK K +KK E
Sbjct: 96 KRSEKPEVRDAAREAALREIKERIKKTKDEKKAKKAE 132
Score = 30.8 bits (69), Expect = 1.3
Identities = 10/50 (20%), Positives = 22/50 (44%)
Query: 715 PDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAAS 764
P+ + + ++ K++ KK K +KK KK + S + + +
Sbjct: 101 PEVRDAAREAALREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRGA 150
Score = 30.0 bits (67), Expect = 1.7
Identities = 13/54 (24%), Positives = 23/54 (42%)
Query: 710 NQIAYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAA 763
++ E ++ K++ KK K +KK KK + K + +G R A
Sbjct: 98 SEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRGAK 151
Score = 30.0 bits (67), Expect = 2.0
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 713 AYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLR 760
A E +++ KK K +KK KK + K +K + K + G + +
Sbjct: 107 AREAALREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRGAKGPK 154
Score = 30.0 bits (67), Expect = 2.0
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 722 EKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQ 766
E ++ K++ KK K +KK KK + K + + A
Sbjct: 109 EAALREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRGAKGP 153
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics,
protein initiative; 2.04A {Lactobacillus salivarius}
Length = 177
Score = 32.3 bits (74), Expect = 0.44
Identities = 6/43 (13%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 831 KKKKKKKKKKKKKKKKKKKKKKMMKKGYP-----DVLSQMEKE 868
+K + + K+ K K+ ++ KG+ ++ +++
Sbjct: 124 EKLANRYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQELDLI 166
Score = 30.0 bits (68), Expect = 1.9
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 714 YPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKY 749
Y DK + E+ +K + + K+ K K+
Sbjct: 110 YTDKLQVEKGVTLAEKLANRYSHDSYRNKQNKIKQS 145
>2kqr_A Asparaginyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA
synthetase, ATP-binding, ligas nucleotide-binding,
protein biosynthesis; NMR {Brugia malayi}
Length = 113
Score = 31.1 bits (70), Expect = 0.48
Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 709 FNQIAYPDKEEEEE-------KKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRD 761
+ + K+ ++ KK K+ +++ K +K K +K + E L +
Sbjct: 39 GDFLIRTKKDGKQVWEAASKTALKKSWKRYEQEMLKNEKVAAKMLEKDATEVGVKAALEE 98
Query: 762 AASIQ 766
A +Q
Sbjct: 99 AKKVQ 103
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA
complex; HET: DNA; 2.27A {Leishmania donovani}
Length = 432
Score = 33.1 bits (75), Expect = 0.48
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 821 FNQI-AYLDKEKKKKKKKKKKKKKKKKKKKKKKMMKKGY 858
F I + +++KK + K++KK K+K+ + Y
Sbjct: 104 FEPIYQWHLVQREKKLSRTKEEKKAIKEKQDAEAEPYRY 142
Score = 31.2 bits (70), Expect = 1.6
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 721 EEKKKKKKKKKKKKKKKKKKKKKKKKKKY 749
+++KK + K++KK K+K+ + + Y
Sbjct: 112 LVQREKKLSRTKEEKKAIKEKQDAEAEPY 140
Score = 28.8 bits (64), Expect = 8.9
Identities = 7/28 (25%), Positives = 17/28 (60%)
Query: 720 EEEKKKKKKKKKKKKKKKKKKKKKKKKK 747
+++KK + K++KK K+K+ + +
Sbjct: 112 LVQREKKLSRTKEEKKAIKEKQDAEAEP 139
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 140
Score = 31.5 bits (72), Expect = 0.49
Identities = 4/27 (14%), Positives = 9/27 (33%)
Query: 724 KKKKKKKKKKKKKKKKKKKKKKKKKYS 750
K K ++ + +K +K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 31.5 bits (72), Expect = 0.53
Identities = 4/27 (14%), Positives = 9/27 (33%)
Query: 725 KKKKKKKKKKKKKKKKKKKKKKKKYSN 751
K K ++ + +K +K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 31.5 bits (72), Expect = 0.55
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 723 KKKKKKKKKKKKKKKKKKKKKKKK 746
K K ++ + +K +K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARK 26
Score = 30.4 bits (69), Expect = 1.0
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 829 KEKKKKKKKKKKKKKKKKKKKKKK 852
K K ++ + +K +K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARK 26
Score = 29.6 bits (67), Expect = 2.5
Identities = 4/27 (14%), Positives = 10/27 (37%)
Query: 831 KKKKKKKKKKKKKKKKKKKKKKMMKKG 857
K ++ + +K + + KG
Sbjct: 4 PIPKIGSRRNGRISSRKSASARKIPKG 30
Score = 29.2 bits (66), Expect = 2.7
Identities = 4/26 (15%), Positives = 9/26 (34%)
Query: 723 KKKKKKKKKKKKKKKKKKKKKKKKKK 748
K ++ + +K +K K
Sbjct: 4 PIPKIGSRRNGRISSRKSASARKIPK 29
>3u5c_X RP37, S28, YS14, 40S ribosomal protein S23-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_L 3o30_P 3o2z_P 3u5g_X 3jyv_L*
1s1h_L* 2zkq_l 3iz6_L
Length = 145
Score = 31.6 bits (71), Expect = 0.49
Identities = 4/57 (7%), Positives = 13/57 (22%)
Query: 724 KKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQCGPVKEVPCEPQIA 780
+ ++ + + KK+ K K + + +
Sbjct: 16 RVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCV 72
Score = 29.3 bits (65), Expect = 2.6
Identities = 4/26 (15%), Positives = 10/26 (38%)
Query: 723 KKKKKKKKKKKKKKKKKKKKKKKKKK 748
K + ++ + + KK+ K
Sbjct: 14 KLRVHRRNNRWAENNYKKRLLGTAFK 39
Score = 28.9 bits (64), Expect = 4.3
Identities = 3/25 (12%), Positives = 9/25 (36%)
Query: 723 KKKKKKKKKKKKKKKKKKKKKKKKK 747
+ ++ + + KK+ K
Sbjct: 16 RVHRRNNRWAENNYKKRLLGTAFKS 40
Score = 28.5 bits (63), Expect = 5.6
Identities = 4/29 (13%), Positives = 9/29 (31%)
Query: 831 KKKKKKKKKKKKKKKKKKKKKKMMKKGYP 859
++ + + KK+ K G
Sbjct: 19 RRNNRWAENNYKKRLLGTAFKSSPFGGSS 47
Score = 27.8 bits (61), Expect = 9.6
Identities = 3/24 (12%), Positives = 9/24 (37%)
Query: 829 KEKKKKKKKKKKKKKKKKKKKKKK 852
+ ++ + + KK+ K
Sbjct: 16 RVHRRNNRWAENNYKKRLLGTAFK 39
>2zkr_p 60S ribosomal protein L19; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 196
Score = 32.3 bits (73), Expect = 0.50
Identities = 20/132 (15%), Positives = 54/132 (40%), Gaps = 9/132 (6%)
Query: 724 KKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQCGPVKEVPCEPQIAPCL 783
+K ++K + K+K + + MR++R I ++ +I +
Sbjct: 64 RKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMR----ILRRLLRRYRESKKIDRHM 119
Query: 784 FDIKNDPCEKNNLADRSEVQRINHYTTEVGYLDPKQRFNQIAYLDKEKKKKKKKKKKKKK 843
+ + N ++ + H K R +A + ++ K K+ +K+++
Sbjct: 120 YHSLYLKVKGNVFKNKRILMEHIHKLKAD-----KARKKLLADQAEARRSKTKEARKRRE 174
Query: 844 KKKKKKKKKMMK 855
++ + KK++++K
Sbjct: 175 ERLQAKKEEIIK 186
Score = 29.6 bits (66), Expect = 3.5
Identities = 11/38 (28%), Positives = 25/38 (65%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEE 754
++ E ++ K K+ +K+++++ + KK++ K S EEE
Sbjct: 156 ADQAEARRSKTKEARKRREERLQAKKEEIIKTLSKEEE 193
Score = 29.2 bits (65), Expect = 4.9
Identities = 19/139 (13%), Positives = 44/139 (31%), Gaps = 23/139 (16%)
Query: 723 KKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQCGPVKEVPCEPQIAPC 782
+K + + +K ++K + + +G R + +
Sbjct: 51 IRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILR------- 103
Query: 783 LFDIKNDPCEKNNLADRSEVQRINHYTTEVGYLDPK-----QRFNQIAYLDKEKKKKKKK 837
L E ++I+ + YL K + + ++ K K K +K
Sbjct: 104 -----------RLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARK 152
Query: 838 KKKKKKKKKKKKKKKMMKK 856
K + + ++ K K +K
Sbjct: 153 KLLADQAEARRSKTKEARK 171
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone
H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain,
histone deacetylase; HET: M2L; NMR {Saccharomyces
cerevisiae}
Length = 136
Score = 31.6 bits (70), Expect = 0.50
Identities = 5/35 (14%), Positives = 8/35 (22%)
Query: 714 YPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKK 748
EE KK+ + K +
Sbjct: 100 RAYNEENIAMKKRLANEAGSTGSAPATGGVXKPHR 134
Score = 28.5 bits (62), Expect = 5.5
Identities = 1/30 (3%), Positives = 6/30 (20%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKK 746
++ + K + +
Sbjct: 107 IAMKKRLANEAGSTGSAPATGGVXKPHRYR 136
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap
DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A
{Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Length = 379
Score = 32.6 bits (74), Expect = 0.60
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 709 FNQIAYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKK 745
F + +E + K KKK K K K+ K
Sbjct: 343 FKVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
Score = 32.6 bits (74), Expect = 0.62
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKK 748
++K+ + K KKK K K K+ K
Sbjct: 348 SLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
Score = 32.2 bits (73), Expect = 0.84
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 715 PDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKK 747
+ K+ + K KKK K K K+ K
Sbjct: 347 GSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
Score = 31.0 bits (70), Expect = 1.7
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 8/63 (12%)
Query: 791 CEKNNLADRSEVQ-RINHYTTEVGYLDPKQRFNQIAYLDKEKKKKKKKKKKKKKKKKKKK 849
++ + + + Q R++ + G L +R + + K KKK K K K
Sbjct: 324 VKRLSKSRQGSTQGRLDDFFKVTGSLSSAKRK-------EPEPKGSTKKKAKTGAAGKFK 376
Query: 850 KKK 852
+ K
Sbjct: 377 RGK 379
Score = 31.0 bits (70), Expect = 2.0
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 708 RFNQIAYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKK 746
F ++ + ++ + K KKK K K K+ K
Sbjct: 341 DFFKVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
Score = 30.3 bits (68), Expect = 2.7
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 820 RFNQIAYLDKEKKKKKKKKKKKKKKKKKKKKKKMMKKG 857
F ++ K+K+ + K KKK K K+G
Sbjct: 341 DFFKVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRG 378
Score = 30.3 bits (68), Expect = 3.1
Identities = 10/42 (23%), Positives = 17/42 (40%)
Query: 698 RINHYTTEVGRFNQIAYPDKEEEEEKKKKKKKKKKKKKKKKK 739
R++ + G + + E + KKK K K K+ K
Sbjct: 338 RLDDFFKVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 32.2 bits (73), Expect = 0.62
Identities = 11/77 (14%), Positives = 29/77 (37%)
Query: 815 LDPKQRFNQIAYLDKEKKKKKKKKKKKKKKKKKKKKKKMMKKGYPDVLSQMEKELANINR 874
L +QR N + + KKK+ ++++ ++ ++ + ++ E+EL R
Sbjct: 101 LAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQR 160
Query: 875 TAVAPINKPFDKGGDPK 891
+ +
Sbjct: 161 NHEGHEDDGHIRAQQAC 177
>3iz5_H 60S ribosomal protein L7A (L7AE); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_H
Length = 258
Score = 32.2 bits (72), Expect = 0.64
Identities = 28/158 (17%), Positives = 51/158 (32%), Gaps = 22/158 (13%)
Query: 723 KKKKKKKKKKKKKKKKKKKKK--KKKKKYSNEEEGMRKLRDAASIQCGPVKEVPCEPQIA 780
K+ + KKK +K +K+ K + +D P K V + Q
Sbjct: 3 PKRGGRAPVPAKKKTEKVTNPLFEKRPKQFGIGGALPPKKDLHRFVKWP-KVVRIQRQRR 61
Query: 781 PCLFDIKNDPCEKNNLADRSEVQRINHYTTEVGYLDPKQRFNQIAYLDKEKKKKKKKKKK 840
+K P +N +T + F + E K KK++
Sbjct: 62 ILKQRLKVPPA-------------LNQFTRTLDKNLATNLFKMLLKYRPEDKAAKKERLL 108
Query: 841 KKKKKKKKKKKKM------MKKGYPDVLSQMEKELANI 872
K+ + + + K +K G V +E+ A +
Sbjct: 109 KRAQAEAEGKTVEAKKPIVVKYGLNHVTYLIEQSKAQL 146
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 32.9 bits (75), Expect = 0.64
Identities = 25/174 (14%), Positives = 70/174 (40%), Gaps = 23/174 (13%)
Query: 716 DKEEEEEKKKKKKKKK---------------KKKKKKKKKKKKKKKKKYSNEEEGMRKLR 760
++EEE ++ + +KKK + ++K + +K K E+ + +
Sbjct: 937 EEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIME 996
Query: 761 DAASIQCGPVKEVPCEPQIAPCLFDIKNDPCEKNNLADRSEVQRINHYTTEVGYLDPKQR 820
D + K + E +++ ++ + + NL + N + + + L+ + +
Sbjct: 997 DQNNKLTKERKLL--EERVSDLTTNLAEEEEKAKNLT-----KLKNKHESMISELEVRLK 1049
Query: 821 FNQIAYLDKEKKKKKKKKKKKKKKKKKKKKKKMMKKGYPDVLSQMEKELANINR 874
+ + + EK K+K + + ++ + + + + L++ E+EL
Sbjct: 1050 KEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAE-LKAQLAKKEEELQAALA 1102
>1914_A Signal recognition particle 9/14 fusion protein; ALU domain, RNA
binding, signal recognition particle (SRP), translation
regulation; 2.53A {Mus musculus} SCOP: d.49.1.1 d.49.1.1
PDB: 1e8o_A* 1e8s_A 1ry1_C*
Length = 232
Score = 31.9 bits (72), Expect = 0.67
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 725 KKKKKKKKKKKKKKKKKKKKKKKKYSNEEEG 755
KK+ KK K KK K + ++K ++ G
Sbjct: 114 KKRDKKNKSKKSKPAQGGEQKLISEEDDSAG 144
Score = 31.1 bits (70), Expect = 1.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 832 KKKKKKKKKKKKKKKKKKKKKMMK 855
KK+ KK K KK K + ++K++
Sbjct: 114 KKRDKKNKSKKSKPAQGGEQKLIS 137
Score = 30.4 bits (68), Expect = 2.2
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 723 KKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRD 761
KK+ KK K KK K + ++K ++ + M + +
Sbjct: 114 KKRDKKNKSKKSKPAQGGEQKLISEEDDSAGSPMPQFQT 152
Score = 30.4 bits (68), Expect = 2.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 825 AYLDKEKKKKKKKKKKKKKKKKKKKKK 851
A +D KK+ KK K KK K + ++K
Sbjct: 108 ANMDGLKKRDKKNKSKKSKPAQGGEQK 134
Score = 29.2 bits (65), Expect = 5.2
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 833 KKKKKKKKKKKKKKKKKKKKMMKK 856
KK+ KK K KK K + ++ +
Sbjct: 114 KKRDKKNKSKKSKPAQGGEQKLIS 137
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 32.1 bits (72), Expect = 0.78
Identities = 19/77 (24%), Positives = 26/77 (33%)
Query: 687 KNNLADRSEDQRINHYTTEVGRFNQIAYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKK 746
+ +S A D EEEK KK K +KKK KK
Sbjct: 362 RQQRESKSNAATPTKGPEGKVAGPADAPMDSGAEEEKAGAATVKKPSPSKARKKKLNKKG 421
Query: 747 KKYSNEEEGMRKLRDAA 763
+K + + G K + A
Sbjct: 422 RKMAGRKRGRPKKMNTA 438
>2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold,
hydrol; 1.93A {Burkholderia cepacia} PDB: 2no5_A*
Length = 240
Score = 31.8 bits (72), Expect = 0.79
Identities = 30/172 (17%), Positives = 46/172 (26%), Gaps = 44/172 (25%)
Query: 170 EYTPTFRGFESHLGYWTGHQDYFDHSAEEMKM-WGLDMRRDLEPAWDLHGKYSTDVFTAE 228
EY+ T + +W + + + ++ L A+ Y T E
Sbjct: 56 EYSWTRTLMHQYADFWQLTDEALTFALRTYHLEDRKGLKDRLMSAYKELSAYPDAAETLE 115
Query: 229 AVDIIHNHSTDEPLFLYLAHAATHSANPYEPLQAPDHYLNIHRHI------EDFKRSK-- 280
+ A S E LQA + R + +D K K
Sbjct: 116 KLKSAG------------YIVAILSNGNDEMLQAALKASKLDRVLDSCLSADDLKIYKPD 163
Query: 281 ---FAAILHKLDESVGKVVEALEQRRMLSNSIIVFVSDN-----GGAAAGFN 324
+ +L V E + FVS N G GFN
Sbjct: 164 PRIYQFACDRLG------VNPNE---------VCFVSSNAWDLGGAGKFGFN 200
>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large
ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila}
PDB: 4a19_E 4a1b_E 4a1d_E
Length = 191
Score = 31.6 bits (71), Expect = 0.86
Identities = 21/139 (15%), Positives = 44/139 (31%), Gaps = 2/139 (1%)
Query: 716 DKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQCGPVKEVPC 775
+ K K K + +++ KK + + + G +
Sbjct: 4 GPAGKNRGVSKISKWYKADDEATPFHRRQLKKATATKLRNDIAPGTVLILLAGRFRGKRV 63
Query: 776 E-PQIAPCLFDIKNDPCEKNNLADRSEVQRINHYT-TEVGYLDPKQRFNQIAYLDKEKKK 833
+ + P + N + + Q T T+V + Y +EK +
Sbjct: 64 VFLKQLKSGLLLVTGPYKVNGVPLKRVNQAYTLSTSTKVDLTGVNTAKFEDDYFGREKAR 123
Query: 834 KKKKKKKKKKKKKKKKKKK 852
K K K + +++KKK+
Sbjct: 124 KNHKNLFKAELTEEQKKKE 142
Score = 30.0 bits (67), Expect = 2.7
Identities = 12/71 (16%), Positives = 28/71 (39%)
Query: 683 DPCEKNNLADRSEDQRINHYTTEVGRFNQIAYPDKEEEEEKKKKKKKKKKKKKKKKKKKK 742
P + N + + +Q T+ + E++ ++K +K K K + ++
Sbjct: 78 GPYKVNGVPLKRVNQAYTLSTSTKVDLTGVNTAKFEDDYFGREKARKNHKNLFKAELTEE 137
Query: 743 KKKKKKYSNEE 753
+KKK+
Sbjct: 138 QKKKETERKNA 148
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_I 4a1c_I 4a1e_I
Length = 198
Score = 31.4 bits (71), Expect = 0.87
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 716 DKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEE 754
+K EE+ + + K KK K+ +KK+ ++
Sbjct: 153 EKLEEKRRARAKTYHDKKVKQADARKKELAAPALKAIKD 191
Score = 29.5 bits (66), Expect = 3.4
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 714 YPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKL 759
E+ E+K++ + K KK K+ +KK+ + KL
Sbjct: 148 KQTLIEKLEEKRRARAKTYHDKKVKQADARKKELAAPALKAIKDKL 193
>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 257
Score = 31.7 bits (72), Expect = 0.90
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 721 EEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEG 755
+KK K K + ++ KK+ + E
Sbjct: 221 PGRKKWVKPSVAKNLARAEEYFAKKRGGETASEPA 255
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 32.6 bits (74), Expect = 0.90
Identities = 18/154 (11%), Positives = 52/154 (33%), Gaps = 19/154 (12%)
Query: 729 KKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQCGPVKEVPCEPQIAPCLFDIKN 788
+ +K+ + ++++ + G++KLRD + VK++ D+KN
Sbjct: 1902 NQVVLLINEKRDQLEEEQLHLNI---GLKKLRDTEAQ----VKDLQVSLAQKNRELDVKN 1954
Query: 789 DPCEKNNLADRSEVQRINHYTTEVGYLDPKQRFNQIAYLDKEKKKKKKKKKKKKKKKKKK 848
+ + +++++ + + L + + K+ +K K
Sbjct: 1955 EQANQ-------KLKQMVQDQQAA-----EIKQKDARELQVQLDVRNKEIAVQKVKAYAD 2002
Query: 849 KKKKMMKKGYPDVLSQMEKELANINRTAVAPINK 882
+K + + Q+E + +
Sbjct: 2003 LEKAEPTGPLREEVEQLENAANELKLKQDEIVAT 2036
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A
{Drosophila melanogaster}
Length = 290
Score = 31.7 bits (71), Expect = 0.92
Identities = 17/115 (14%), Positives = 33/115 (28%)
Query: 697 QRINHYTTEVGRFNQIAYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGM 756
+N + N + +E + + KK +K K K +K K Y + +
Sbjct: 92 NDVNSQIKTWQKENYHHTLMQIKERKDLEDLFKKAQKPWAKLLAKVEKAKADYHSACKTE 151
Query: 757 RKLRDAASIQCGPVKEVPCEPQIAPCLFDIKNDPCEKNNLADRSEVQRINHYTTE 811
R + P + + D +K + I Y +
Sbjct: 152 RSATNQERNANADSSLSPDQVKKMHDRVQKTKDQVQKCREKYEQAIAEITKYNSV 206
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA,
national project on structural and functional analyses;
2.61A {Homo sapiens} SCOP: a.238.1.4
Length = 305
Score = 31.6 bits (71), Expect = 0.95
Identities = 18/127 (14%), Positives = 49/127 (38%), Gaps = 6/127 (4%)
Query: 710 NQIAYPDKEEEEEKKKKKK------KKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAA 763
+QI +E K+++K +K ++ + K+ + K+++ + + + +
Sbjct: 101 SQIIVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYF 160
Query: 764 SIQCGPVKEVPCEPQIAPCLFDIKNDPCEKNNLADRSEVQRINHYTTEVGYLDPKQRFNQ 823
+ + + A I++ E + S +Q+ NH E + F +
Sbjct: 161 EKMDADINVTKADVEKARQQAQIRHQMAEDSKADYSSILQKFNHEQHEYYHTHIPNIFQK 220
Query: 824 IAYLDKE 830
I +++
Sbjct: 221 IQEMEER 227
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.96
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 9/32 (28%)
Query: 752 EEEGMRKLRDAASIQCGPVKEVPCEPQIAPCL 783
E++ ++KL+ AS++ AP L
Sbjct: 18 EKQALKKLQ--ASLK-------LYADDSAPAL 40
Score = 29.5 bits (65), Expect = 2.5
Identities = 7/22 (31%), Positives = 8/22 (36%), Gaps = 2/22 (9%)
Query: 253 SANPYEPLQAPDHYLNIHRHIE 274
S Y AP L I +E
Sbjct: 28 SLKLYADDSAPA--LAIKATME 47
Score = 28.0 bits (61), Expect = 9.2
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 7/34 (20%)
Query: 843 KKKKKKKKKKMMKKGY-PDVLSQMEKELANINRT 875
+K+ KK + +K Y D S LA I T
Sbjct: 18 EKQALKKLQASLKL-YADD--SA--PALA-IKAT 45
>3qc1_A Immunoglobulin-binding protein 1; PP2A, signaling protein; 2.35A
{Mus musculus}
Length = 243
Score = 31.6 bits (71), Expect = 0.98
Identities = 13/77 (16%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 685 CEKNNLADRSEDQRINHYTTEVGRFNQIAYPDKEEEEEKKKKKKK--KKKKKKKKKKKKK 742
C ++A+ Q + + +AYP+ +++ K + K+KK+ + +
Sbjct: 137 CHCYHVAEFQLPQTKTNSAENNTASSSMAYPNLVAMASQRQAKIERYKQKKEVEHRLSAL 196
Query: 743 KKKKKKYSNEEEGMRKL 759
K + ++E +R+
Sbjct: 197 KSAVESGQADDERVREY 213
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 32.1 bits (73), Expect = 0.99
Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 3/62 (4%)
Query: 821 FNQIAYLDKEKKKKKKKKKKKKKKKKKKKKKKMMKKGYPDVLSQMEKELANINRTAVAPI 880
F +I L K+ ++K + KK+ K +V + A + P+
Sbjct: 621 FGRIITLKDTWGKQGGGTQQKAEGKKRPSTKGRGPD---EVRGEGSSSPAKAHAPKAQPL 677
Query: 881 NK 882
Sbjct: 678 TP 679
Score = 31.0 bits (70), Expect = 2.5
Identities = 8/49 (16%), Positives = 15/49 (30%)
Query: 724 KKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQCGPVKE 772
K K+ ++K + KK+ K +E A +
Sbjct: 628 KDTWGKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQP 676
Score = 30.6 bits (69), Expect = 2.7
Identities = 8/44 (18%), Positives = 15/44 (34%)
Query: 723 KKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQ 766
K+ ++K + KK+ K + + E A Q
Sbjct: 632 GKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQ 675
Score = 29.8 bits (67), Expect = 4.9
Identities = 9/51 (17%), Positives = 19/51 (37%)
Query: 722 EKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQCGPVKE 772
+ K+ ++K + KK+ K + EG A + + P+
Sbjct: 629 DTWGKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQPLTP 679
Score = 29.4 bits (66), Expect = 7.2
Identities = 9/53 (16%), Positives = 20/53 (37%)
Query: 726 KKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQCGPVKEVPCEPQ 778
K K+ ++K + KK+ + +R ++ + K P P+
Sbjct: 628 KDTWGKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQPLTPE 680
Score = 29.4 bits (66), Expect = 7.4
Identities = 9/44 (20%), Positives = 17/44 (38%)
Query: 723 KKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQ 766
K K+ ++K + KK+ K + +E G A +
Sbjct: 628 KDTWGKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHA 671
Score = 29.0 bits (65), Expect = 8.8
Identities = 7/51 (13%), Positives = 17/51 (33%)
Query: 723 KKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQCGPVKEV 773
K+ ++K + KK+ K + + K + P ++
Sbjct: 633 KQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQPLTPEQDA 683
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_M 4a1c_M 4a1e_M
Length = 301
Score = 31.6 bits (71), Expect = 0.99
Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 727 KKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQ 766
+ K KK K K+ KK K + + RK R Q
Sbjct: 260 RVKSTKKNDKPKRDHKKFYPTKLTAAQ---RKDRVKTKFQ 296
Score = 30.8 bits (69), Expect = 1.9
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 828 DKEKKKKKKKKKKKKKKKKKKKKKKM 853
+ E+ K KK K K+ KK K+
Sbjct: 257 NPERVKSTKKNDKPKRDHKKFYPTKL 282
Score = 28.5 bits (63), Expect = 9.0
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 715 PDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKK 747
P++ + +K K K+ KK K ++K +
Sbjct: 258 PERVKSTKKNDKPKRDHKKFYPTKLTAAQRKDR 290
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD,
protein binding; HET: MSE; 1.85A {Mus musculus}
Length = 253
Score = 31.7 bits (71), Expect = 1.00
Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 11/119 (9%)
Query: 649 AMRKLRDAASIQCGPVKEVPCEPQIAPCLFDI----KNDPCEKNNLADRSEDQRINHYTT 704
A +K+ D A+ G +E I L + ++ + + D IN
Sbjct: 60 AFQKVADMATNTRGGTRE------IGSALTRMCMRHRSIEAKLRQFSSALIDCLINPLQE 113
Query: 705 EVGRFNQ-IAYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDA 762
++ + + DK+ +E KK +++ KKK K +KK KK + +L A
Sbjct: 114 QMEEWKKVANQLDKDHAKEYKKARQEIKKKSSDTLKLQKKAKKVDAQGRGDIQPQLDSA 172
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 31.7 bits (72), Expect = 1.0
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 715 PDKE-EEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDA 762
+ E ++ E K + +K +KKKKKK K + + E + +
Sbjct: 352 SEMEVQDAELKALLQSSASRKTQKKKKKKASKTAENATSGETLEENEAG 400
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_4
Length = 265
Score = 31.3 bits (70), Expect = 1.1
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 723 KKKKKKKKKKKKKKKKKKKKKKKKKK 748
K K KK KK+ +K+
Sbjct: 5 KNPGLKAGGGKKGAKKRTIDPLSRKE 30
Score = 30.2 bits (67), Expect = 2.5
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 832 KKKKKKKKKKKKKKKKKKKKKMMKK 856
K K KK KK+ + +K
Sbjct: 5 KNPGLKAGGGKKGAKKRTIDPLSRK 29
Score = 30.2 bits (67), Expect = 2.6
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 724 KKKKKKKKKKKKKKKKKKKKKKKKKYS 750
K KK KK+ +K+ Y
Sbjct: 7 PGLKAGGGKKGAKKRTIDPLSRKEWYD 33
Score = 29.4 bits (65), Expect = 5.5
Identities = 13/61 (21%), Positives = 19/61 (31%), Gaps = 4/61 (6%)
Query: 831 KKKKKKKKKKKKKKKKKKKKKKMMKKGY----PDVLSQMEKELANINRTAVAPINKPFDK 886
K K KK KK+ K+ Y P S + +++ I K
Sbjct: 5 KNPGLKAGGGKKGAKKRTIDPLSRKEWYDFRAPIPFSSKSFGKTLVTKSSGNRIASEEIK 64
Query: 887 G 887
G
Sbjct: 65 G 65
>3u5e_g 60S ribosomal protein L34-A, 60S ribosomal protein L33-A;
translation, ribosome, ribosomal R ribosomal protein,
STM1, eukaryotic ribosome; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5i_g 3izc_i 3izs_i
Length = 121
Score = 30.4 bits (68), Expect = 1.1
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 720 EEEKKKKKKKKKKKKKKKKKKKKKKK 745
EE+K KK K++ + KK +KK KK
Sbjct: 96 EEQKIVKKVVKEQTEAAKKSEKKAKK 121
Score = 29.3 bits (65), Expect = 2.0
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 721 EEKKKKKKKKKKKKKKKKKKKKKKKK 746
EE+K KK K++ + KK +KK KK
Sbjct: 96 EEQKIVKKVVKEQTEAAKKSEKKAKK 121
Score = 28.1 bits (62), Expect = 6.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 719 EEEEKKKKKKKKKKKKKKKKKKKKKK 744
EE++ KK K++ + KK +KK KK
Sbjct: 96 EEQKIVKKVVKEQTEAAKKSEKKAKK 121
Score = 27.7 bits (61), Expect = 6.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 718 EEEEEKKKKKKKKKKKKKKKKKKKKK 743
EE++ KK K++ + KK +KK KK
Sbjct: 96 EEQKIVKKVVKEQTEAAKKSEKKAKK 121
Score = 27.7 bits (61), Expect = 7.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 722 EKKKKKKKKKKKKKKKKKKKKKKKKK 747
E++K KK K++ + KK +KK KK
Sbjct: 96 EEQKIVKKVVKEQTEAAKKSEKKAKK 121
Score = 27.3 bits (60), Expect = 9.5
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 825 AYLDKEKK--KKKKKKKKKKKKKKKKKKKK 852
A+L +E+K KK K++ + KK +KK KK
Sbjct: 92 AFLIEEQKIVKKVVKEQTEAAKKSEKKAKK 121
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 31.8 bits (73), Expect = 1.1
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 828 DKEKKKKKKKKKKKKKKKKKKKKKKMMKK 856
+ K KKK + K+K+K + MKK
Sbjct: 19 SGDMAAKMSKKKAGRGGGKRKEKLENMKK 47
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC,
protein binding; 2.40A {Homo sapiens}
Length = 279
Score = 31.3 bits (70), Expect = 1.1
Identities = 7/49 (14%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 714 YPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDA 762
Y + E+ + + + + K++++++ + EE K ++A
Sbjct: 142 YVQRSEDLRARSQGSPEDSAPQASPGPSKQQERRR-RSREEAQAKAQEA 189
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K,
structural genomi protein structure initiative; 2.35A
{Lactobacillus reuteri}
Length = 221
Score = 31.2 bits (71), Expect = 1.1
Identities = 7/69 (10%), Positives = 30/69 (43%), Gaps = 10/69 (14%)
Query: 805 INHYTTEVGYLDPKQRFNQIAYLDKEKKKKKKKKKKKKKKKKKKKKKKMMKKGYP----- 859
I+ T+ + ++A K ++ + + ++++++K ++ + KG+
Sbjct: 146 IDDALTQFTPEVQAELAKKLA-----LKLFRRYRNQPERRREQKVQQGLTTKGFSSSVYE 200
Query: 860 DVLSQMEKE 868
+ ++ +
Sbjct: 201 MIKDEVVPQ 209
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_K
Length = 206
Score = 31.1 bits (70), Expect = 1.2
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 718 EEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRK 758
E EEK+K+K K ++K+ K + K +K + +
Sbjct: 159 RELEEKRKEKAKVSYDRRKQLAKLRVKAEKAAEEKLGTQLE 199
Score = 29.9 bits (67), Expect = 2.4
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 691 ADRSEDQRINHYTTEVGRFNQI---AYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKK 747
A + + H +G+ ++ Y D E E+K+K+K K ++K+ K + K +
Sbjct: 128 ALKVLRLQPGHRYCLLGQLSKEVGWNYADTIRELEEKRKEKAKVSYDRRKQLAKLRVKAE 187
Query: 748 KYSNEE 753
K + E+
Sbjct: 188 KAAEEK 193
Score = 29.2 bits (65), Expect = 5.3
Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 797 ADRSEVQRINHYTTEVGYLDPKQRFNQIAYLDK-EKKKKKKKKKKKKKKKKKKKKKKMMK 855
A + + H +G L + +N + + E+K+K+K K ++K+ K + +
Sbjct: 128 ALKVLRLQPGHRYCLLGQLSKEVGWNYADTIRELEEKRKEKAKVSYDRRKQLAKLRVKAE 187
Query: 856 KGYPDVLSQMEKELANI 872
K + L + LA I
Sbjct: 188 KAAEEKLGTQLEILAPI 204
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 92
Score = 29.3 bits (66), Expect = 1.2
Identities = 6/35 (17%), Positives = 16/35 (45%)
Query: 818 KQRFNQIAYLDKEKKKKKKKKKKKKKKKKKKKKKK 852
K ++ + A D E+ + K+ +++ + K
Sbjct: 54 KLKYEEKATKDLERYNSQMKRAIEQESQMSLKDSG 88
>3izc_G 60S ribosomal protein RPL6 (L6E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_G
3o58_F 3o5h_F 3u5e_E 3u5i_E
Length = 176
Score = 30.8 bits (69), Expect = 1.3
Identities = 32/145 (22%), Positives = 51/145 (35%), Gaps = 22/145 (15%)
Query: 723 KKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQCGPV----------KE 772
+K K + KK +K + +KLR AS+ G V K
Sbjct: 2 SAQKAPKWYPSEDVAALKKTRKAARP--------QKLR--ASLVPGTVLILLAGRFRGKR 51
Query: 773 VPCEPQIAPCLFDIKNDPCEKNNLADRSEVQRINHYT-TEVGYLDPKQRFNQIAYLDKEK 831
V + I + P + N + R R T T+V + Y KEK
Sbjct: 52 VVYLKHLEDNTLLI-SGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEK 110
Query: 832 KKKKKKKKKKKKKKKKKKKKKMMKK 856
KK+KK+ +++ K+ K +
Sbjct: 111 LTKKEKKEANLFPEQQNKEIKAERV 135
>2enk_A HUEL, solute carrier family 30 member 9; cation transporter,
cobalt, zinc, cadmium, protein of unknown function
DUF993, embryonic LUNG protein; NMR {Homo sapiens}
Length = 101
Score = 29.5 bits (66), Expect = 1.4
Identities = 6/34 (17%), Positives = 20/34 (58%)
Query: 718 EEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSN 751
E ++KK +K+ + + +++ + +K ++Y +
Sbjct: 68 PEALAREKKLRKEAEIEYRERLFRNQKILREYRD 101
Score = 27.5 bits (61), Expect = 6.3
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 827 LDKEKKKKKKKKKKKKKKKKKKKKK 851
L +EKK +K+ + + +++ + +K
Sbjct: 71 LAREKKLRKEAEIEYRERLFRNQKI 95
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_R 4a1c_R 4a1e_R
Length = 150
Score = 30.2 bits (68), Expect = 1.4
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 720 EEEKKKKKKKKKKKKKKKKKKKKKKKKKK 748
+E K + K K K KK K K
Sbjct: 2 NKENKTQAVNKAKNTAKVAKKGSSITKHK 30
Score = 29.8 bits (67), Expect = 2.3
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 719 EEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSN 751
+E K + K K K KK K K Y+
Sbjct: 2 NKENKTQAVNKAKNTAKVAKKGSSITKHKTYTG 34
Score = 28.7 bits (64), Expect = 4.5
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 716 DKEEEEEKKKKKKKKKKKKKKKKKKKKKK 744
+KE + + K K K KK K K
Sbjct: 2 NKENKTQAVNKAKNTAKVAKKGSSITKHK 30
Score = 28.7 bits (64), Expect = 4.7
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 718 EEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYS 750
+E + + K K K KK K K
Sbjct: 2 NKENKTQAVNKAKNTAKVAKKGSSITKHKTYTG 34
Score = 27.9 bits (62), Expect = 9.3
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 827 LDKEKKKKKKKKKKKKKKKKKKKKKKMMKK 856
++KE K + K K K KK K
Sbjct: 1 MNKENKTQAVNKAKNTAKVAKKGSSITKHK 30
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene,
replication block, mutagenesis, transferase/electron
transport/DNA complex; HET: DNA 2DT 8FG; 2.10A
{Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB:
1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A*
1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A*
1zyq_A* 2ajq_A*
Length = 698
Score = 31.4 bits (71), Expect = 1.4
Identities = 24/113 (21%), Positives = 33/113 (29%), Gaps = 13/113 (11%)
Query: 140 LSEKILPQYLKELGYRTRIVGKWHLGFYKKEYTPTFRGFESHLGYWTGHQDYFDHSAEEM 199
L LP L+ GYR LG K EY F+ G + + EEM
Sbjct: 110 LRSGKLPGALEAWGYR--------LGEMKGEYKDDFKRMLEEQGEEYVDGMEWWNFNEEM 161
Query: 200 KMWGLDMRRDLEPAWDLHGKYSTDVFTAEAVDIIHNHSTDEPLFLYLAHAATH 252
+ +D+ L K +D I F + A
Sbjct: 162 MDY---NVQDVVVTKALLEKLLSDKH--YFPPEIDFTDVGYTTFWSESLEAVD 209
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_Q 4a1c_Q 4a1e_Q
Length = 183
Score = 30.7 bits (69), Expect = 1.5
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 721 EEKKKKKKKKKKKKKKKKKKKKKKKKKKYSN 751
+E K +K+ K KK K KK K N
Sbjct: 153 QEVAAKVRKEAPKDAAKKVPKTKKGKLAIGN 183
Score = 30.3 bits (68), Expect = 1.8
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKK 746
+E + +K+ K KK K KK K
Sbjct: 153 QEVAAKVRKEAPKDAAKKVPKTKKGKLAIG 182
Score = 30.3 bits (68), Expect = 1.9
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 716 DKEEEEEKKKKKKKKKKKKKKKKKKKKKK 744
+ + K+ K KK K KK K
Sbjct: 154 EVAAKVRKEAPKDAAKKVPKTKKGKLAIG 182
Score = 29.9 bits (67), Expect = 2.4
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 718 EEEEEKKKKKKKKKKKKKKKKKKKKKKKKK 747
+E K +K+ K KK K KK K
Sbjct: 153 QEVAAKVRKEAPKDAAKKVPKTKKGKLAIG 182
Score = 29.2 bits (65), Expect = 4.1
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 719 EEEEKKKKKKKKKKKKKKKKKKKKKKKKKK 748
+E K +K+ K KK K KK K
Sbjct: 153 QEVAAKVRKEAPKDAAKKVPKTKKGKLAIG 182
Score = 28.0 bits (62), Expect = 10.0
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 828 DKEKKKKKKKKKKKKKKKKKKKKKKM 853
+ K +K+ K KK K KK K+
Sbjct: 154 EVAAKVRKEAPKDAAKKVPKTKKGKL 179
>3u5e_R 60S ribosomal protein L19-A; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 2wwa_J 2ww9_J 3izc_T
3izs_T 2wwb_J 3o5h_S 3o58_S 3u5i_R 1s1i_P
Length = 189
Score = 30.4 bits (68), Expect = 1.5
Identities = 15/138 (10%), Positives = 49/138 (35%), Gaps = 35/138 (25%)
Query: 724 KKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQCGPVKEVPCEPQIAPCL 783
+ + K++ + K+K ++ + ++ +R+LR
Sbjct: 64 RAHAQSKREGRHSGYGKRKGTREARLPSQVVWIRRLR----------------------- 100
Query: 784 FDIKNDPCEKNNLADRSEVQRINHYTTEVGYLDPK-----QRFNQIAYLDKEKKKKKKKK 838
+ LA + +I+ + V Y + K + + ++ + K +++K
Sbjct: 101 -------VLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIIQAKADAQREK 153
Query: 839 KKKKKKKKKKKKKKMMKK 856
++ + ++ K + +
Sbjct: 154 ALNEEAEARRLKNRAARD 171
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Length = 151
Score = 30.2 bits (68), Expect = 1.6
Identities = 4/27 (14%), Positives = 6/27 (22%)
Query: 831 KKKKKKKKKKKKKKKKKKKKKKMMKKG 857
KK +K+ G
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANENVFG 29
Score = 29.8 bits (67), Expect = 1.9
Identities = 3/26 (11%), Positives = 7/26 (26%)
Query: 724 KKKKKKKKKKKKKKKKKKKKKKKKKY 749
KK +K+ + +
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANENVF 28
Score = 29.8 bits (67), Expect = 2.1
Identities = 3/26 (11%), Positives = 6/26 (23%)
Query: 726 KKKKKKKKKKKKKKKKKKKKKKKYSN 751
KK +K+ +
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANENVF 28
Score = 29.8 bits (67), Expect = 2.3
Identities = 3/23 (13%), Positives = 6/23 (26%)
Query: 723 KKKKKKKKKKKKKKKKKKKKKKK 745
KK +K+ +
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANE 25
Score = 29.4 bits (66), Expect = 3.1
Identities = 4/27 (14%), Positives = 7/27 (25%)
Query: 729 KKKKKKKKKKKKKKKKKKKKYSNEEEG 755
KK +K+ + G
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANENVFG 29
Score = 28.3 bits (63), Expect = 6.9
Identities = 3/23 (13%), Positives = 6/23 (26%)
Query: 722 EKKKKKKKKKKKKKKKKKKKKKK 744
KK +K+ +
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANE 25
Score = 28.3 bits (63), Expect = 6.9
Identities = 3/23 (13%), Positives = 6/23 (26%)
Query: 830 EKKKKKKKKKKKKKKKKKKKKKK 852
KK +K+ +
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANE 25
Score = 28.3 bits (63), Expect = 7.6
Identities = 2/23 (8%), Positives = 6/23 (26%)
Query: 829 KEKKKKKKKKKKKKKKKKKKKKK 851
+K +K+ +
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANE 25
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.00A
{Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A
3q84_A
Length = 312
Score = 30.9 bits (69), Expect = 1.6
Identities = 14/116 (12%), Positives = 38/116 (32%), Gaps = 4/116 (3%)
Query: 700 NHYTTEVGRFNQIAYPDKEEEEEKKKKKK----KKKKKKKKKKKKKKKKKKKKYSNEEEG 755
N ++ + + A+ + K+ K+ +K +K KK K+ + KK + +
Sbjct: 113 NDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKE 172
Query: 756 MRKLRDAASIQCGPVKEVPCEPQIAPCLFDIKNDPCEKNNLADRSEVQRINHYTTE 811
+ + P + + + K ++ ++ T +
Sbjct: 173 EKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQ 228
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Length = 135
Score = 29.9 bits (67), Expect = 1.8
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 715 PDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKK 748
+K +++K+KK + KK K+ KK ++
Sbjct: 100 VEKASRQQRKQKKNRDKKIFGTGKRLAKKVARRN 133
Score = 29.2 bits (65), Expect = 2.9
Identities = 9/39 (23%), Positives = 20/39 (51%)
Query: 710 NQIAYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKK 748
+A ++ +++K+KK + KK K+ KK ++
Sbjct: 94 YGLAEKVEKASRQQRKQKKNRDKKIFGTGKRLAKKVARR 132
Score = 28.0 bits (62), Expect = 8.0
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 829 KEKKKKKKKKKKKKKKKKKKKKKK 852
K+KK + KK K+ KK ++
Sbjct: 109 KQKKNRDKKIFGTGKRLAKKVARR 132
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A
{Barmah forest virus}
Length = 253
Score = 30.8 bits (69), Expect = 1.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 829 KEKKKKKKKKKKKKKKKKKKKKKKMMK 855
+K +K KK +KKK K K+ + MK
Sbjct: 74 PKKTQKPKKPTQKKKSKPGKRMRNCMK 100
>3pe5_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium, NESG; 2.38A {Clostridium leptum}
Length = 403
Score = 31.1 bits (70), Expect = 1.8
Identities = 4/32 (12%), Positives = 11/32 (34%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKK 748
+ +E + + + K K+ +K
Sbjct: 5 RRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 30.3 bits (68), Expect = 3.3
Identities = 4/32 (12%), Positives = 10/32 (31%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKK 748
+E + + + K K+ +K
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSN 35
>3k29_A Putative uncharacterized protein; YSCO, type III secretion
apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia
trachomatis}
Length = 169
Score = 30.4 bits (67), Expect = 1.8
Identities = 21/152 (13%), Positives = 58/152 (38%), Gaps = 10/152 (6%)
Query: 714 YPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEE----------GMRKLRDAA 763
YP + KK + + +K K+K++ + +++K E E +R+LR+
Sbjct: 5 YPLEPVLSIKKDRVDRAEKVVKEKRRLLELEQEKLRERESERDKVKNHYMQKIRQLREQL 64
Query: 764 SIQCGPVKEVPCEPQIAPCLFDIKNDPCEKNNLADRSEVQRINHYTTEVGYLDPKQRFNQ 823
+ + I + + + N + EV ++ +
Sbjct: 65 DDGTTSDAILKMKAYIKVVAIQLSEEEEKVNKQKENVLAASKELERAEVELTKRRKEEEK 124
Query: 824 IAYLDKEKKKKKKKKKKKKKKKKKKKKKKMMK 855
+E K+ K++ ++++K++ + +++
Sbjct: 125 TRLHKEEWMKEALKEEARQEEKEQDEMGQLLH 156
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA
binding protein, KINK T ribosomal protein; 1.81A
{Giardia lamblia}
Length = 122
Score = 29.4 bits (66), Expect = 1.9
Identities = 7/43 (16%), Positives = 17/43 (39%)
Query: 834 KKKKKKKKKKKKKKKKKKKMMKKGYPDVLSQMEKELANINRTA 876
++ + K + +K+G + L Q+ + A + A
Sbjct: 12 NEELSLELLNLVKHGASLQAIKRGANEALKQVNRGKAELVIIA 54
>2yk0_A Erythrocyte membrane protein 1; adhesin, pfemp1; 2.80A {Plasmodium
falciparum}
Length = 790
Score = 31.0 bits (70), Expect = 1.9
Identities = 8/80 (10%), Positives = 25/80 (31%)
Query: 793 KNNLADRSEVQRINHYTTEVGYLDPKQRFNQIAYLDKEKKKKKKKKKKKKKKKKKKKKKK 852
K + + + + Y + + + + + K K++ + + +
Sbjct: 633 KKHFNKQFHGEGYDIAFKVKSYFEDNEADVRKSIDNFHVLKNKEEYEICNVDDNCRSQNN 692
Query: 853 MMKKGYPDVLSQMEKELANI 872
KK +L + K+
Sbjct: 693 KKKKDIVTILLKELKDKIVS 712
>3bbn_N Ribosomal protein S14; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 100
Score = 29.0 bits (66), Expect = 1.9
Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 720 EEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKL----RDAASI 765
+ EKK++ ++K ++ K++ +K S++ E KL R++A
Sbjct: 8 QREKKRRNLEQKYHLIRRSSKQEIRKVTSLSDKWEIHGKLQSPPRNSAPA 57
>2ew5_A Peptide deformylase; inhibitor, hydrolase; HET: Y12; 2.20A
{Helicobacter pylori} PDB: 2ew6_A* 2ew7_A
Length = 181
Score = 30.2 bits (69), Expect = 1.9
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 728 KKKKKKKKKKKKKKKKKKKKKYSNEEE 754
K+KK +K+ K+ +KK+K K ++ +
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHHHH 181
Score = 28.6 bits (65), Expect = 5.4
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 727 KKKKKKKKKKKKKKKKKKKKKKYSNEE 753
K+KK +K+ K+ +KK+K K + + +
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHHHH 181
Score = 28.6 bits (65), Expect = 5.9
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 824 IAYLDKEKKKKKKKKKKKKKKKKKKKKKK 852
+ L K+KK +K+ K+ +KK+K K +
Sbjct: 148 VDKLSILKRKKFEKELKELQKKQKHKLEH 176
Score = 27.9 bits (63), Expect = 10.0
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 723 KKKKKKKKKKKKKKKKKKKKKKKKKKY 749
K+KK +K+ K+ +KK+K K + +
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHHHH 181
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase;
1.80A {Bacillus SP} PDB: 2inv_A*
Length = 410
Score = 31.1 bits (69), Expect = 2.0
Identities = 20/116 (17%), Positives = 27/116 (23%), Gaps = 2/116 (1%)
Query: 485 PRLENSINGNGTSENRSNDNSYQNEIDGIDVWSVLSRNEPSKRNTILHNIDDEWQISALT 544
PR + I G + N Q G+ + N I +
Sbjct: 251 PRGRSLIEFTGCNRCSVTSNRLQGFYPGMLRLLNGCKENLITANHIRRTNEGYPPFIGRG 310
Query: 545 RGKWKLVKENSING--NGTSENRSNDNSYQNEIDGIDVWSVLSRNEPSKRNTILHN 598
G L I G N S+N N I N + N
Sbjct: 311 NGLDDLYGVVHIAGDNNLISDNLFAYNVPPANIAPAGAQPTQILIAGGDANVVALN 366
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 30.8 bits (69), Expect = 2.0
Identities = 8/46 (17%), Positives = 18/46 (39%)
Query: 701 HYTTEVGRFNQIAYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKK 746
HYT + Q + +E+ K+ K+ K + ++ +
Sbjct: 213 HYTNGLYSLIQRSKCGPVGSDERVKEFKQSLIKYMETQRSYTALAE 258
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces
cerevisiae}
Length = 1030
Score = 31.0 bits (70), Expect = 2.0
Identities = 6/49 (12%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 693 RSEDQRINHYTTEVGRFNQIAYPDKEEEEEKKKKKKKKKKKKKKKKKKK 741
D + + + D ++E E ++++K + + K+
Sbjct: 976 LDHD--VKQQYVPISYSKDPSIWDLKQELEDAEEERKLMMAEARAKRTH 1022
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane
targeting, GTPase, GAP, longin domain, SEDL, transport
protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4
PDB: 2go5_1
Length = 185
Score = 30.1 bits (67), Expect = 2.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 715 PDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEG 755
K E+ EK KK + + + +K K+K K KK ++EG
Sbjct: 145 MKKFEDSEKAKKPVRSMIETRGEKPKEKAKNSKKKGAKKEG 185
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 156
Score = 29.8 bits (67), Expect = 2.2
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 829 KEKKKKKKKKKKKKKKKKKKKKKKMMK 855
K KK+ K + K K K KK ++K
Sbjct: 4 KAKKEAPAPPKAEAKAKALKAKKAVLK 30
Score = 29.5 bits (66), Expect = 3.1
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 832 KKKKKKKKKKKKKKKKKKKKKMMKKG 857
KK+ K + K K K KK + KG
Sbjct: 6 KKEAPAPPKAEAKAKALKAKKAVLKG 31
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 30.4 bits (69), Expect = 2.3
Identities = 12/73 (16%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
Query: 793 KNNLADRSEVQRINHYTTEVGY----LDPKQRFNQIAYLDKEKKKKKKKKKKKKKKKKKK 848
K + AD + Q+ + G ++ + K+ ++K + + K K
Sbjct: 59 KADKADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKP 118
Query: 849 KKKKMMKKGYPDV 861
+ + + G P+V
Sbjct: 119 RAIRALIIGIPNV 131
>2w4s_A Ankyrin-repeat protein; RNA transport, structural protein; 2.45A
{Cryptosporidium parvum}
Length = 113
Score = 29.2 bits (65), Expect = 2.4
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 711 QIAYPDKEEEEEKKKKKKKKKKKKKKKKKK 740
I + +EEK++ K K+ ++ +
Sbjct: 83 TIQEWNYIRQEEKERINAKNILKRNNRRCQ 112
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A
{Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B*
1ux4_A
Length = 411
Score = 30.6 bits (69), Expect = 2.7
Identities = 5/47 (10%), Positives = 14/47 (29%), Gaps = 2/47 (4%)
Query: 716 DKEEEEEKKKKKKKKKKKKKKKKKKKKKK--KKKKYSNEEEGMRKLR 760
+ E+ ++ K K+K+ +K + +
Sbjct: 42 VLADLEKAFAAREIKSLASKRKEDLQKITFLSRDISQQFGINLHMYS 88
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA
methylation, S- adenosylmethionine, PSI, protein
structure initiative; HET: SAM; 1.74A {Moraxella bovis}
SCOP: c.66.1.11
Length = 260
Score = 30.0 bits (68), Expect = 2.8
Identities = 16/120 (13%), Positives = 31/120 (25%), Gaps = 14/120 (11%)
Query: 643 REWLALAMRKLRDAASI--QCGPVKEVPCEPQIAPCLFDIKND---------PCEKNNLA 691
W+ + KL S+ P + +N K +
Sbjct: 54 YRWIDKVLDKLDKDGSLYIFNTPFNCAFICQYLVSKGMIFQNWITWDKRDGMGSAKRRFS 113
Query: 692 DRSEDQRINHYT-TEVGRFNQIAYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYS 750
E I ++ ++ FN E ++ K +K K K+ +
Sbjct: 114 TGQET--ILFFSKSKNHTFNYDEVRVPYESTDRIKHASEKGILKNGKRWFPNPNGRLCGE 171
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A
{Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Length = 102
Score = 28.6 bits (63), Expect = 2.8
Identities = 3/24 (12%), Positives = 14/24 (58%)
Query: 720 EEEKKKKKKKKKKKKKKKKKKKKK 743
+ +K+++ +K +++ + K +
Sbjct: 79 DTNLQKQRELQKANQEQYAEGKMR 102
Score = 28.2 bits (62), Expect = 3.8
Identities = 3/28 (10%), Positives = 14/28 (50%)
Query: 714 YPDKEEEEEKKKKKKKKKKKKKKKKKKK 741
+ +K+++ +K +++ + K +
Sbjct: 75 LKYVDTNLQKQRELQKANQEQYAEGKMR 102
Score = 27.8 bits (61), Expect = 5.4
Identities = 3/24 (12%), Positives = 14/24 (58%)
Query: 721 EEKKKKKKKKKKKKKKKKKKKKKK 744
+ +K+++ +K +++ + K +
Sbjct: 79 DTNLQKQRELQKANQEQYAEGKMR 102
Score = 27.8 bits (61), Expect = 5.4
Identities = 6/46 (13%), Positives = 20/46 (43%)
Query: 807 HYTTEVGYLDPKQRFNQIAYLDKEKKKKKKKKKKKKKKKKKKKKKK 852
HY+ D +++ +K+++ +K +++ + K +
Sbjct: 57 HYSGWNKNWDEWVPESRVLKYVDTNLQKQRELQKANQEQYAEGKMR 102
Score = 27.4 bits (60), Expect = 6.6
Identities = 3/24 (12%), Positives = 14/24 (58%)
Query: 719 EEEEKKKKKKKKKKKKKKKKKKKK 742
+ +K+++ +K +++ + K +
Sbjct: 79 DTNLQKQRELQKANQEQYAEGKMR 102
>2rmn_A Tumor protein 63; beta sandwich, DNA binding, P53 family,
activator, alternative promoter usage, alternative
splicing; NMR {Homo sapiens}
Length = 233
Score = 30.1 bits (67), Expect = 2.9
Identities = 6/37 (16%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 713 AYP--DKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKK 747
A P D++ +E+ +K++ K ++ +
Sbjct: 195 ACPGRDRKADEDSIRKQQVSDSTKNGDAFRQNTHGIQ 231
>2xzm_L 40S ribosomal protein S12; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_L 3j0o_L 3j0l_L
3j0p_L 3j0q_L 3iz6_L 3jyv_L* 1s1h_L*
Length = 142
Score = 29.2 bits (65), Expect = 3.0
Identities = 3/31 (9%), Positives = 9/31 (29%)
Query: 829 KEKKKKKKKKKKKKKKKKKKKKKKMMKKGYP 859
+K ++ K+ + + G
Sbjct: 16 ARHRKDQRWADNDFNKRLLGSRWRNPFMGAS 46
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 145
Score = 29.2 bits (65), Expect = 3.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 826 YLDKEKKKKKKKKKKKKKKKKKKKKKK 852
LDK++KK ++K K ++ K+K K K
Sbjct: 110 KLDKDRKKILERKAKSRQVGKEKGKYK 136
Score = 28.1 bits (62), Expect = 7.9
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 724 KKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGM 756
K K +KK ++K K ++ K+K KY E
Sbjct: 110 KLDKDRKKILERKAKSRQVGKEKGKYKEETIEK 142
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription
regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo
sapiens}
Length = 214
Score = 29.7 bits (66), Expect = 3.1
Identities = 20/149 (13%), Positives = 54/149 (36%), Gaps = 11/149 (7%)
Query: 726 KKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQCGPVKEVPCEPQIAPCLFD 785
KKK + + + + K++ ++ + + + I +K + L
Sbjct: 54 SKKKIYQDAYRAEWQVYKEEISRFKEQLTPSQIMSLEKEIMDKHLKRKAMTKKKELTLLG 113
Query: 786 IKNDPCEKNNL---ADRSEVQRINH--YTTEVGYLDPKQRFNQIAYLDKEK-KKKKKKKK 839
P N+ E + + V + + ++ +KE + K+ +
Sbjct: 114 KPKRPRSAYNVYVAERFQEAKGDSPQEKLKTVK-----ENWKNLSDSEKELYIQHAKEDE 168
Query: 840 KKKKKKKKKKKKKMMKKGYPDVLSQMEKE 868
+ + K +++M++ G D+L + K+
Sbjct: 169 TRYHNEMKSWEEQMIEVGRKDLLRRTIKK 197
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_P
Length = 149
Score = 29.2 bits (65), Expect = 3.1
Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 708 RFNQIAYPDKEEEEEKKKKKKKKKKKK---KKKKKKKKKKKKKKYSN 751
R ++ ++ + K+ K+K K+ K K +KK +++
Sbjct: 88 RLRKVKILGEKPNTRRSFKELKRKIKRTSGKAITKLLSEKKGDTWAS 134
Score = 29.2 bits (65), Expect = 3.5
Identities = 10/56 (17%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 817 PKQRFNQIAYLDKEKKKKKKKKKKKKKKKKK--KKKKKMMKKGYPDVLSQMEKELA 870
P R ++ L ++ ++ K+ K+K K+ K K++ + D + ++ + +
Sbjct: 85 PNYRLRKVKILGEKPNTRRSFKELKRKIKRTSGKAITKLLSEKKGDTWASVQSKKS 140
Score = 28.8 bits (64), Expect = 4.8
Identities = 10/36 (27%), Positives = 13/36 (36%)
Query: 829 KEKKKKKKKKKKKKKKKKKKKKKKMMKKGYPDVLSQ 864
KE K+K K+ K K +KK S
Sbjct: 106 KELKRKIKRTSGKAITKLLSEKKGDTWASVQSKKSD 141
>2kgl_A Mesoderm development candidate 2; MESD, LRP5/6, chaperone, YWTD,
WNT; NMR {Mus musculus} PDB: 2kmi_A 2rqk_A 2rqm_A
Length = 195
Score = 29.8 bits (66), Expect = 3.1
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 709 FNQIAYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKK-KYSNEEEGM 756
YP K ++K K K +K KKK+ K + K+ + + E +
Sbjct: 147 LEGQMYPGKGGGSKEKNKTKPEKAKKKEGDPKPRASKEDNRAGSRREDL 195
>1zl9_A GST class-sigma, glutathione S-transferase 5; glutathione
transferase, C.elegans; HET: GSH; 2.01A {Caenorhabditis
elegans}
Length = 207
Score = 29.6 bits (67), Expect = 3.3
Identities = 3/37 (8%), Positives = 7/37 (18%)
Query: 838 KKKKKKKKKKKKKKKMMKKGYPDVLSQMEKELANINR 874
+ KK + + + L
Sbjct: 111 VMGFGPGDVETLKKDIFLPAFEKFYGFLVNFLKASGS 147
>1k3y_A GSTA1-1, glutathione S-transferase A1; S-hexyl glutatione, water
structu transferase; HET: GTX; 1.30A {Homo sapiens}
SCOP: a.45.1.1 c.47.1.5 PDB: 1gsf_A* 1guh_A* 1gsd_A*
1k3o_A 1k3l_A* 1pl1_A* 1pkz_A 1pkw_A* 2r6k_A* 1gse_A*
3u6v_A 1usb_A* 1ydk_A* 3q74_A 3ktl_A* 1pl2_A* 2r3x_A*
1xwg_A 3l0h_A* 1ags_A* ...
Length = 221
Score = 29.8 bits (67), Expect = 3.4
Identities = 12/56 (21%), Positives = 19/56 (33%)
Query: 791 CEKNNLADRSEVQRINHYTTEVGYLDPKQRFNQIAYLDKEKKKKKKKKKKKKKKKK 846
K NL + +R G D + + E+K K K+K K +
Sbjct: 75 ASKYNLYGKDIKERALIDMYIEGIADLGEMILLLPVCPPEEKDAKLALIKEKIKNR 130
>1twu_A Hypothetical protein YYCE; structural genomics, protein structure
initiative, MCSG, DUP of the alpha-beta sandwichs.
bacillus subtilis, PSI; 2.00A {Bacillus subtilis} SCOP:
d.32.1.8
Length = 139
Score = 29.1 bits (65), Expect = 3.4
Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 6/87 (6%)
Query: 143 KILPQYLKELGYRTRIVGK----WHLGFYKKEYTPTFRGF--ESHLGYWTGHQDYFDHSA 196
K + ++ + GY + G +HL F + E T +S L ++ +
Sbjct: 36 KRIGEFSQHNGYDGVMFGLPHADYHLEFTQYEGGSTAPVPHPDSLLVFYVPNAVELAAIT 95
Query: 197 EEMKMWGLDMRRDLEPAWDLHGKYSTD 223
++K G P W G D
Sbjct: 96 SKLKHMGYQEVESENPYWSNGGVTIED 122
>3i1m_U 30S ribosomal protein S21; ribosome structure, protein-RNA complex,
ribonucleoprotein, ribosomal protein, RNA-binding,
rRNA-binding, antibiotic resistance; 3.19A {Escherichia
coli k-12} PDB: 1vs7_U* 2avy_U 2aw7_U 2vho_U 2vhp_U
3df1_U* 3df3_U* 3e1a_Q 3e1c_Q 1vs5_U 3i1o_U 3i1q_U
3i1s_U 3i1z_U 3i21_U 3izv_Y* 3izw_Y* 3kc4_U 3or9_U
3ora_U ...
Length = 71
Score = 27.5 bits (61), Expect = 3.5
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 721 EEKKKKKKKKKKKKKKKKKKKKKKKKKKY 749
E+K+ K K+ KK ++ ++ + Y
Sbjct: 43 TERKRAKASAVKRHAKKLARENARRTRLY 71
>3u5c_B RP10A, 40S ribosomal protein S1-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_B
Length = 255
Score = 29.7 bits (66), Expect = 3.5
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 724 KKKKKKKKKKKKKKKKKKKKKKKKKYS 750
K K+ K KK +KK+ +K+ +
Sbjct: 5 KNKRLSKGKKGQKKRVVDPFTRKEWFD 31
Score = 28.9 bits (64), Expect = 6.6
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 723 KKKKKKKKKKKKKKKKKKKKKKKK 746
K K+ K KK +KK+ +K+
Sbjct: 5 KNKRLSKGKKGQKKRVVDPFTRKE 28
Score = 28.6 bits (63), Expect = 9.9
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 829 KEKKKKKKKKKKKKKKKKKKKKKK 852
K K+ K KK +KK+ +K+
Sbjct: 5 KNKRLSKGKKGQKKRVVDPFTRKE 28
>2vqe_R 30S ribosomal protein S18; tRNA-binding, rRNA-binding,
metal-binding, zinc-finger, translation; HET: TM2 PAR;
2.5A {Thermus thermophilus} SCOP: a.4.8.1 PDB: 1fka_R
1fjg_R 1gix_U* 1hnw_R* 1hnx_R* 1hnz_R* 1hr0_R 1ibk_R*
1ibl_R* 1ibm_R 1j5e_R 1jgo_U* 1jgp_U* 1jgq_U* 1ml5_U*
1n32_R* 1n33_R* 1n34_R 1n36_R 1xmo_R* ...
Length = 88
Score = 28.1 bits (63), Expect = 3.6
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 727 KKKKKKKKKKKKKKKKKKKKKKYSNEE 753
K K KK+ +++ +K K K + E
Sbjct: 2 STKNAKPKKEAQRRPSRKAKVKATLGE 28
Score = 27.7 bits (62), Expect = 4.3
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 829 KEKKKKKKKKKKKKKKKKKKKKKKMMKKGYPD 860
K K KK+ +++ +K K K + + D
Sbjct: 2 STKNAKPKKEAQRRPSRKAKVKATLGEFDLRD 33
Score = 27.3 bits (61), Expect = 5.4
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 723 KKKKKKKKKKKKKKKKKKKKKKKKKK 748
K K KK+ +++ +K K K +
Sbjct: 3 TKNAKPKKEAQRRPSRKAKVKATLGE 28
Score = 27.3 bits (61), Expect = 6.3
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 831 KKKKKKKKKKKKKKKKKKKKKKMMKKGYPDV 861
K K KK+ +++ +K K K +
Sbjct: 2 STKNAKPKKEAQRRPSRKAKVKATLGEFDLR 32
>3i1m_F 30S ribosomal protein S6; ribosome structure, protein-RNA complex,
ribonucleoprotein, ribosomal protein, RNA-binding,
rRNA-binding, antibiotic resistance; 3.19A {Escherichia
coli k-12} PDB: 1p6g_F 1p87_F* 1vs7_F* 2avy_F 2aw7_F
1vs5_F 2i2u_F 2i2p_F* 2qan_F* 2qb9_F* 2qbb_F* 2qbd_F
2qbf_F 2qbh_F* 2qbj_F* 2qou_F* 2qow_F* 2qoy_F* 2qp0_F*
2vho_F ...
Length = 135
Score = 28.9 bits (65), Expect = 3.7
Identities = 6/43 (13%), Positives = 14/43 (32%), Gaps = 4/43 (9%)
Query: 716 DKEEEEE----KKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEE 754
E K K ++++++ + + EEE
Sbjct: 93 KHAVTEASPMVKAKDERRERRDDFANETADDAEAGDSEEEEEE 135
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus}
SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A*
1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A*
2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B
Length = 435
Score = 29.9 bits (68), Expect = 3.8
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 9/34 (26%)
Query: 78 HGLDQIPTPNIDALAYSGIILK-------NYYTV 104
G + P PN+DA +SG++L+ NYYTV
Sbjct: 362 QGKAKNPWPNVDA--HSGVLLQYYGMTEMNYYTV 393
>3iz6_U 40S ribosomal protein S24 (S24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 138
Score = 28.8 bits (64), Expect = 3.9
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 717 KEEEEEKKKKKKKKKKKKKK----KKKKKKKKKKKK 748
+ E+ +K+ K++K + KK KK K KKK
Sbjct: 103 ATKVEKSRKQMKERKNRAKKIRGVKKTKAGDAGKKK 138
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding
protein; NMR {Homo sapiens} SCOP: a.21.1.1
Length = 99
Score = 28.1 bits (63), Expect = 3.9
Identities = 5/39 (12%), Positives = 17/39 (43%)
Query: 818 KQRFNQIAYLDKEKKKKKKKKKKKKKKKKKKKKKKMMKK 856
K ++ Q +K++ ++ + ++ + KK+
Sbjct: 57 KMKYIQDFQREKQEFERNLARFREDHPDLIQNAKKLEHH 95
>3a5c_G V-type ATP synthase subunit D; V-ATPase, asymmetric, rotation,
vacuolar type, hydrolase, ATP synthesis, ATP-binding,
hydrogen ION transport; HET: ADP; 4.51A {Thermus
thermophilus} PDB: 3a5d_G 3j0j_G*
Length = 223
Score = 29.4 bits (65), Expect = 4.2
Identities = 6/39 (15%), Positives = 17/39 (43%)
Query: 718 EEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGM 756
+ E E + K+ K K + ++ +++ + G+
Sbjct: 185 QREREDTFRLKRIKGKIEAREAEEEGGRPNPQVEIGAGL 223
Score = 29.4 bits (65), Expect = 5.1
Identities = 5/33 (15%), Positives = 18/33 (54%)
Query: 716 DKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKK 748
++ E E+ + K+ K K + ++ +++ + +
Sbjct: 184 EQREREDTFRLKRIKGKIEAREAEEEGGRPNPQ 216
>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP:
c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A
Length = 232
Score = 29.4 bits (66), Expect = 4.3
Identities = 20/172 (11%), Positives = 42/172 (24%), Gaps = 44/172 (25%)
Query: 170 EYTPTFRGFESHLGYWTGHQDYFDHSAEEMKM-WGLDMRRDLEPAWDLHGKYSTDVFTAE 228
EYT ++ + +D + + + R L A+ +S +
Sbjct: 46 EYTWLRSLMNRYVNFQQATEDALRFTCRHLGLDLDARTRSTLCDAYLRLAPFSEVPDSLR 105
Query: 229 AVDIIHNHSTDEPLFLYLAHAATHSANPYEPLQAPDHYLNIHRHI------EDFKRSK-- 280
+ A S + + A + + + + K
Sbjct: 106 ELKRRG------------LKLAILSNGSPQSIDAVVSHAGLRDGFDHLLSVDPVQVYKPD 153
Query: 281 ---FAAILHKLDESVGKVVEALEQRRMLSNSIIVFVSDN-----GGAAAGFN 324
+ L ++ I+FV+ N G GF
Sbjct: 154 NRVYELAEQALG------LDRSA---------ILFVASNAWDATGARYFGFP 190
>3s51_A Protein FACI, fanconi anemia group I protein homolog; DNA repair, DNA
binding protein; 3.30A {Mus musculus} PDB: 3s4z_A* 3s4w_A
Length = 1308
Score = 30.3 bits (67), Expect = 4.4
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 712 IAYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKK 745
I+Y + + K +K+K K ++ K
Sbjct: 1214 ISYVQNKSSDAPKCSEKEKAAVSTTMAKVLRETK 1247
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast,
His-TAG, RNA binding protein; 1.80A {Saccharomyces
cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A
3siv_A 1e7k_A
Length = 134
Score = 28.4 bits (63), Expect = 4.8
Identities = 3/39 (7%), Positives = 14/39 (35%)
Query: 834 KKKKKKKKKKKKKKKKKKKMMKKGYPDVLSQMEKELANI 872
++ ++ + +KKG + + + ++
Sbjct: 13 DAALTQQILDVVQQAANLRQLKKGANEATKTLNRGISEF 51
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward
rectifier, potassium channel selectivity filter, metal
transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Length = 321
Score = 29.7 bits (66), Expect = 5.0
Identities = 11/66 (16%), Positives = 18/66 (27%), Gaps = 6/66 (9%)
Query: 233 IHNHSTDEPLFLYLAHAATHSANPYEPLQAPDHYLNIHRHIEDFKRSKFAAILHKLDESV 292
+ + + LFL H + P E IL + E+
Sbjct: 200 VGFSTGADQLFLVSPLTICHVIDAKSPFYDLSQRSMQTEQFE------VVVILEGIVETT 253
Query: 293 GKVVEA 298
G +A
Sbjct: 254 GMTCQA 259
>2hdi_A Colicin I receptor; outer membrane, iron transport, TONB BOX,
signal transductio colicin I receptor, receptor ligand,
membrane protein; HET: LDA; 2.50A {Escherichia coli}
PDB: 2hdf_A*
Length = 639
Score = 29.8 bits (67), Expect = 5.0
Identities = 24/188 (12%), Positives = 57/188 (30%), Gaps = 26/188 (13%)
Query: 409 NGTHEYNSPRIENSNTRYENGTHEYNPKYENRYENGTHEYNPKYENRYENGTHEYNGPKN 468
G+ ++T + G + +R N + P + + G ++
Sbjct: 180 YGSLAKREKDDPQNSTTTDTGETPRIEGFSSRDGNVEFAWTPNQNHDFTAGYGFDRQDRD 239
Query: 469 ENTNPRYENGTHEYNIPRLENSINGNGTSENRSNDNSYQNEIDGIDVWSVLSRNEPSKRN 528
++ + Y++ N GTSE + +N+ + S
Sbjct: 240 SDSLDKNRLERQNYSV--SHNGRWDYGTSELKYYGEKVENK----------NPGNSSPIT 287
Query: 529 TILHNIDDEWQISALTRGKWKL----------VKENSINGNGTSENRSNDNSY---QNEI 575
+ + +D ++ + LT L + + GTS S ++E
Sbjct: 288 SESNTVDGKYTLP-LTAINQFLTVGGEMRHDKMSDAVNLTGGTSSKTSASQYALFVEDEW 346
Query: 576 DGIDVWSV 583
+ ++
Sbjct: 347 RIFEPLAL 354
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 29.1 bits (66), Expect = 5.0
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 721 EEKKKKKKKKKKKKKKKKKKKKKKKKKK 748
E ++ K+ K+K+ + K K
Sbjct: 168 LETRRNMSLNIDGKRSGKQKRTDRVKGK 195
>1yq1_A Glutathione S-transferase; nematoda, structural genomics, PSI,
protein structure initiative; 3.00A {Caenorhabditis
elegans}
Length = 208
Score = 29.2 bits (66), Expect = 5.2
Identities = 9/83 (10%), Positives = 22/83 (26%), Gaps = 9/83 (10%)
Query: 792 EKNNLADRSEVQRINHYTTEVGYLDPKQRFNQIAYLDKEKKKKKKKKKKKKKKKKKKKKK 851
K A ++ + + D F + A + K ++ +K +
Sbjct: 74 RKFGFAGKTPEEEAWVDAVHDLFKDFLAEFKKFAAERRSGKSAEEV---------EKFRS 124
Query: 852 KMMKKGYPDVLSQMEKELANINR 874
+ + + L N
Sbjct: 125 EFFLPARNTYFNILNGLLEKSNS 147
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A
{Pyrococcus horikoshii} PDB: 3gqx_B
Length = 169
Score = 28.7 bits (64), Expect = 5.2
Identities = 10/34 (29%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 717 KEEEEEK--KKKKKKKKKKKKKKKKKKKKKKKKK 748
K+E E + + K+K + K++K+++K +K K+
Sbjct: 136 KKELEARIKEIKEKYPRPPKRRKEERKGRKPWKE 169
Score = 28.7 bits (64), Expect = 5.9
Identities = 8/48 (16%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 698 RINHYT-TEVGRFNQIAYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKK 744
R+++++ + + + +E ++K + K++K+++K +K K+
Sbjct: 122 RVDYFSGEYIAEELKKELEARIKEIKEKYPRPPKRRKEERKGRKPWKE 169
>2cs2_A Poly [ADP-ribose] polymerase-1; DNA BIND, DNA repair, necrosis,
apoptosis, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 134
Score = 28.5 bits (63), Expect = 5.3
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 709 FNQIAYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEE 753
F+ +A DKE +++ K + K+K + + KKK
Sbjct: 89 FSLLATEDKEALKKQLPGVKSEGKRKGDEVDGVDEVAKKKSGPSS 133
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga
maritima}
Length = 352
Score = 29.3 bits (66), Expect = 5.4
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 711 QIAYPDKEEEEEKKKKKKKKKKKKKKKK 738
+ E + +K+ + K K++K
Sbjct: 203 FAKVSGRVEVVDYSTRKEIRIYKTKRRK 230
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics,
NPPSFA, national project on structural and functional
analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Length = 301
Score = 29.3 bits (65), Expect = 5.6
Identities = 16/127 (12%), Positives = 51/127 (40%), Gaps = 6/127 (4%)
Query: 710 NQIAYPDKEEEEEKKKKKK------KKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAA 763
++ + +E K+++K ++ +++ + K+ + K+K+ + K A
Sbjct: 94 VRVCLELTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTA 153
Query: 764 SIQCGPVKEVPCEPQIAPCLFDIKNDPCEKNNLADRSEVQRINHYTTEVGYLDPKQRFNQ 823
+ + + A +++ E++ +++QR N + Q F++
Sbjct: 154 ERLDQDINATKADVEKAKQQAHLRSHMAEESKNEYAAQLQRFNRDQAHFYFSQMPQIFDK 213
Query: 824 IAYLDKE 830
+ +D+
Sbjct: 214 LQDMDER 220
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome,
RNA binding protein; 1.56A {Aeropyrum pernix} SCOP:
d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D*
3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C
3lwv_C 3hjw_C* 2czw_A 1pxw_A
Length = 124
Score = 28.2 bits (63), Expect = 5.6
Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 825 AYLDKEKKKKKKKKKKKKKKKKKKKKKKMMKKGYPDVLSQMEKELANI 872
Y+ E + +K + K+ ++ +KKG + +E+ LA +
Sbjct: 2 IYVRFEVPEDLAEKAY--EAVKRARETGRIKKGTNETTKAVERGLAKL 47
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding
protein, gene regulation; NMR {Homo sapiens} SCOP:
b.40.4.5
Length = 143
Score = 28.4 bits (63), Expect = 5.6
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 726 KKKKKKKKKKKKKKKKKKKKKKKYSNEEEG 755
K K K K +++ K + + +K++ +E+G
Sbjct: 2 KNKGKGGKNRRRGKNENESEKRELVFKEDG 31
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 29.2 bits (65), Expect = 5.7
Identities = 16/136 (11%), Positives = 41/136 (30%), Gaps = 2/136 (1%)
Query: 716 DKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQCGPVKEVPC 775
E+E +KK K + + K + K ++K E+ + ++
Sbjct: 38 QLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLF-- 95
Query: 776 EPQIAPCLFDIKNDPCEKNNLADRSEVQRINHYTTEVGYLDPKQRFNQIAYLDKEKKKKK 835
E ++ + + ++ E +++ KE K
Sbjct: 96 EEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIA 155
Query: 836 KKKKKKKKKKKKKKKK 851
+ +K ++ +K
Sbjct: 156 EDADRKYEEVARKLVI 171
>2on7_A Nagst-1, Na glutathione S-transferase 1; hookworm; 2.40A {Necator
americanus}
Length = 206
Score = 28.9 bits (65), Expect = 5.8
Identities = 4/31 (12%), Positives = 12/31 (38%)
Query: 841 KKKKKKKKKKKKMMKKGYPDVLSQMEKELAN 871
++ ++ KK+++ + K L
Sbjct: 112 MREGDVEQLKKEVLLPARDKFFGFITKFLKK 142
>1nz8_A Transcription antitermination protein NUSG; transcription
elongation, riken structural genomics/proteomics
initiative, RSGI; NMR {Thermus thermophilus} SCOP:
d.58.42.1
Length = 119
Score = 27.9 bits (63), Expect = 6.0
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Query: 687 KNNLADRSEDQRINHYTTEVGRFNQIAYPDKEEEEEKKKKKKKKKKKK 734
K NL R + + Q+ P +E E ++ KK+ +KK
Sbjct: 18 KANLEKRIKAFGLQDK------IFQVLIPTEEVVELREGGKKEVVRKK 59
>2wmf_A Fucolectin-related protein; hydrolase, glycoside hydrolase, blood
group antigen, fucose utilization; 1.50A {Streptococcus
pneumoniae} PDB: 2wmh_A* 2wmg_A*
Length = 581
Score = 29.5 bits (65), Expect = 6.5
Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 5/101 (4%)
Query: 102 YTVQLCTPSRSAIMTGKHPIHTG-MQHNVLYGCERGGLPLSEKILPQYLKELGYRTRIVG 160
Y P++ T P T ++ + E L G R +
Sbjct: 73 YAAIELHPAKVCKPTSCIPRDTKELREWYVKMLEEAQSLNIPVFLVIMSA--GERNTVPP 130
Query: 161 KWHLGFYKKEYTPTFRGFESHLGYWTGHQDYFDHSAEEMKM 201
+W ++K +G + YW + HSA+ +++
Sbjct: 131 EWLDEQFQK--YSVLKGVLNIENYWIYNNQLAPHSAKYLEV 169
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma
factor, transcription regulation; 2.60A {Escherichia
coli} SCOP: a.177.1.1
Length = 339
Score = 29.1 bits (65), Expect = 6.6
Identities = 19/152 (12%), Positives = 40/152 (26%), Gaps = 14/152 (9%)
Query: 717 KEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQCGPVKEVPCE 776
E +K + + + + K K + E + ++ K+
Sbjct: 104 DPELAREKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEV----------FKQF--- 150
Query: 777 PQIAPCLFDIKNDPCEKNNLADRSEVQRINHYTTEVGYLDPKQRFNQIAYLDKEKKKKKK 836
++ P FD + R++ + I E + K +
Sbjct: 151 -RLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNA 209
Query: 837 KKKKKKKKKKKKKKKKMMKKGYPDVLSQMEKE 868
K +K L Q+E+E
Sbjct: 210 AIAMNKPWSEKLHDVSEEVHRALQKLQQIEEE 241
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic
initiation facto SGC, structural genomics; 1.80A
{Cryptosporidium parvum iowa II}
Length = 117
Score = 27.7 bits (61), Expect = 6.8
Identities = 9/41 (21%), Positives = 20/41 (48%)
Query: 831 KKKKKKKKKKKKKKKKKKKKKKMMKKGYPDVLSQMEKELAN 871
K K K +++ K + K++++ K Q+++ L N
Sbjct: 4 NKGKGGKNRRRGKNDSEGDKRELVFKEEGQEYGQVQRMLGN 44
Score = 27.7 bits (61), Expect = 8.2
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 726 KKKKKKKKKKKKKKKKKKKKKKKYSNEEEGM 756
K K K K +++ K + K++ +EEG
Sbjct: 3 KNKGKGGKNRRRGKNDSEGDKRELVFKEEGQ 33
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP,
signaling protein; HET: GNP; 2.00A {Thermotoga maritima}
PDB: 3cnn_A* 3cno_A*
Length = 262
Score = 28.8 bits (65), Expect = 6.9
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 816 DPKQRFNQIAYLDKEKKK-----KKKKKKKKKKKKKKKKKKKMMKKGYPDV 861
D K + + K+ K+ K + +K KK + +++ G P+
Sbjct: 60 DEKTTKKWVEFFKKQGKRVITTHKGEPRKVLLKKLSFDRLARVLIVGVPNT 110
>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin,
replication, AC chromosomal protein, DNA damage, DNA
repair; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A
3bit_A*
Length = 467
Score = 29.2 bits (65), Expect = 6.9
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 703 TTEVGR-FNQIAYPDKEEEEEKKKKKKKKKKK 733
T + +QI++ EEE+ KKK K
Sbjct: 435 LTNYTKAKSQISFYFNNEEEDNNKKKSSPATK 466
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA
complex, transcription factor, BZIP, C/EBP; 1.80A {Homo
sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A
1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Length = 78
Score = 26.8 bits (59), Expect = 7.1
Identities = 11/50 (22%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 714 YPDKEEEEEKKKKKK-----KKKKKKKKKKKKKKKKKKKKYSNEEEGMRK 758
DK +E K ++++ +K + K K + + + K + + E E ++K
Sbjct: 8 TVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQK 57
>3jyw_M 60S ribosomal protein L16(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
1s1i_M
Length = 178
Score = 28.6 bits (64), Expect = 7.2
Identities = 0/27 (0%), Positives = 0/27 (0%)
Query: 721 EEKKKKKKKKKKKKKKKKKKKKKKKKK 747
Sbjct: 151 AAAAAAAAAAAAAAAAAAAAAAAAAAA 177
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA
polymerase, stringent response, PPGPP, riken structural
genomics/proteomics initiative; 2.00A {Escherichia coli}
SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Length = 151
Score = 28.4 bits (63), Expect = 7.4
Identities = 6/35 (17%), Positives = 15/35 (42%)
Query: 720 EEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEE 754
+E + +K + ++K ++Y NE +
Sbjct: 2 QEGQNRKTSSLSILAIAGVEPYQEKPGEEYMNEAQ 36
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP,
translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Length = 504
Score = 29.1 bits (66), Expect = 7.6
Identities = 10/37 (27%), Positives = 14/37 (37%)
Query: 829 KEKKKKKKKKKKKKKKKKKKKKKKMMKKGYPDVLSQM 865
K K K + + K ++M K P VL M
Sbjct: 438 KGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHM 474
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse,
BAR domain, endocytosis; 2.60A {Mus musculus} PDB:
3qe6_A
Length = 320
Score = 29.0 bits (64), Expect = 7.8
Identities = 15/111 (13%), Positives = 32/111 (28%), Gaps = 4/111 (3%)
Query: 705 EVGRFNQIAYPDKEEEEEKKKKKK----KKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLR 760
V + + A+ + + +K +K K+ K+ + KK Y + + +
Sbjct: 109 RVRTWQRGAFHRPVLGGFRASRAAEDGFRKAQKPWLKRLKEVEASKKSYHTARKDEKTAQ 168
Query: 761 DAASIQCGPVKEVPCEPQIAPCLFDIKNDPCEKNNLADRSEVQRINHYTTE 811
S + + EK + +N YT
Sbjct: 169 TRESHAKADSSMSQEQLRKLQERVGRCTKEAEKMKTQYEQTLAELNRYTPR 219
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear
protein complex, chromatin remodeling nucleosome
remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Length = 374
Score = 29.0 bits (64), Expect = 7.9
Identities = 11/75 (14%), Positives = 24/75 (32%)
Query: 680 IKNDPCEKNNLADRSEDQRINHYTTEVGRFNQIAYPDKEEEEEKKKKKKKKKKKKKKKKK 739
++ + L D ++D+ + A E+E + KK K +
Sbjct: 292 LEKEFNAGIVLDDATKDRMKKEDENGKRIREEFADQTANEKENVDGVESKKAKIEDTSNV 351
Query: 740 KKKKKKKKKYSNEEE 754
++ +K E
Sbjct: 352 GTEQLVAEKIPENET 366
>3bbo_D Ribosomal protein L1; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 352
Score = 28.7 bits (64), Expect = 7.9
Identities = 10/66 (15%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Query: 691 ADRSEDQRINHYTTEVGRFNQIAYPDKEEEEEKKK---KKKKKKKKKKKKKKKKKKKKKK 747
A +E + + E P + ++ K K + + K+ + +K ++ K+
Sbjct: 74 AVAAEAEVADMEEEEGESGGVATLPSPTKPKKGKAALPLKSDRTRSKRFLEIQKLREIKQ 133
Query: 748 KYSNEE 753
+Y +
Sbjct: 134 EYDLKT 139
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain,
coiled-coil domain, DNA and cleavage, nucleus; HET: DNA
EVP; 2.16A {Homo sapiens}
Length = 803
Score = 29.3 bits (65), Expect = 8.0
Identities = 11/56 (19%), Positives = 16/56 (28%), Gaps = 6/56 (10%)
Query: 721 EEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQCGPVKEVPCE 776
+ +K K K K +G+ KL DA G + C
Sbjct: 5 SHPQFEKGADDDDKVPDPTSVDSVKYSKI----KGIPKLDDAND--AGGKHSLECT 54
>2hnl_A Glutathione S-transferase 1; prostaglandin synthase, river BLI
onchocerca volvulus, immune modulation; HET: GSH; 2.00A
{Onchocerca volvulus}
Length = 225
Score = 28.5 bits (64), Expect = 8.0
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 841 KKKKKKKKKKKKMMKKGYPDVLSQMEKELAN 871
K KK + + + + L + EK L
Sbjct: 133 KNTTKKAELFRNLSESDVMPFLGRYEKFLKE 163
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; 2.20A {Eubacterium eligens}
Length = 138
Score = 28.1 bits (62), Expect = 8.2
Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 689 NLADR--SEDQRINHYTTEVGRFNQIAYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKK 746
N+AD + + + ++ ++ Y K E + K + K+ K+ K + K +K
Sbjct: 65 NIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQK 124
Query: 747 KKYSNEEE 754
E E
Sbjct: 125 NIVKLETE 132
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription
factor, structural genomics, structural genomics
consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP:
d.79.3.1
Length = 135
Score = 27.9 bits (62), Expect = 8.7
Identities = 7/43 (16%), Positives = 15/43 (34%)
Query: 834 KKKKKKKKKKKKKKKKKKKMMKKGYPDVLSQMEKELANINRTA 876
K ++ K ++KG + + + +A I A
Sbjct: 22 SPDLNNKIINLVQQACNYKQLRKGANEATKALNRGIAEIVLLA 64
>4ayb_Q DNA-directed RNA polymerase; transferase, multi-subunit,
transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_J
4b1o_Q 4b1p_J 2y0s_J 2waq_Q
Length = 104
Score = 27.2 bits (59), Expect = 9.0
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 714 YPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKK 746
+ D ++ EK+ ++K KK KK KK KKK+K
Sbjct: 68 FEDNYKDYEKRDSRRKAKKAASKKVKKTKKKEK 100
>3iz5_T 60S ribosomal protein L19 (L19E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_T
Length = 209
Score = 28.5 bits (63), Expect = 9.1
Identities = 10/59 (16%), Positives = 26/59 (44%)
Query: 713 AYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEEEGMRKLRDAASIQCGPVK 771
+ +K E+ + + K+ K K +++K +++++ + E S CG +
Sbjct: 145 SKAEKAREKTLSDQFEAKRAKSKASRERKIARREERLAPGPERSCTSTSGCSSSCGTKE 203
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA
binding protein/structural protein complex; HET: EPE;
1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1
PDB: 1ra4_A* 1sds_A 3paf_A
Length = 120
Score = 27.6 bits (61), Expect = 9.4
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 833 KKKKKKKKKKKKKKKKKKKKMMKKGYPDVLSQMEKELA 870
K K ++ +K+ K + +KKG +V +E+ +A
Sbjct: 9 KFKVPEEIQKELLDAVAKAQKIKKGANEVTKAVERGIA 46
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 28.4 bits (64), Expect = 9.5
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 721 EEKKKKKKKKKKKKKKKKKKKKKKKKKK 748
E + +K + K+K KKK+K K+ ++
Sbjct: 174 EIRARKMEDSKEKNGKKKRKSLAKRIRE 201
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA
polymerase III; HET: DGT; 2.39A {Geobacillus
kaustophilus} PDB: 3f2c_A* 3f2d_A*
Length = 1041
Score = 28.8 bits (65), Expect = 9.6
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 841 KKKKKKKKKKKKMMKKGYPDVLSQMEK 867
K K + + +M K P+ K
Sbjct: 825 KGKGLTPEFEAEMRKHDVPEWYIDSCK 851
>2wb9_A Glutathione transferase sigma class; thioredoxin fold; HET: GSH;
1.59A {Fasciola hepatica} PDB: 2wdu_A*
Length = 211
Score = 28.1 bits (63), Expect = 9.6
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 841 KKKKKKKKKKKKMMKKGYPDVLSQMEKELAN 871
+ +K+ K K+ + P +L + + L +
Sbjct: 115 TPQGEKEAKIKEFKENNGPTLLKLVSESLES 145
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 28.6 bits (63), Expect = 9.7
Identities = 7/54 (12%), Positives = 16/54 (29%)
Query: 700 NHYTTEVGRFNQIAYPDKEEEEEKKKKKKKKKKKKKKKKKKKKKKKKKKYSNEE 753
N E + A + + + + ++ KK + S E+
Sbjct: 68 NQSRAEQLASLEAAQRAVGVGPGSSAGSNARAEFWRLRGLRRGAKKTTQRSRED 121
>1zro_A Erythrocyte binding antigen region II; EBA-175, RII, DBL, invasion,
HOST, malaria, disease, glycophorin, glycan, sialic
acid; HET: SO4; 2.25A {Plasmodium falciparum} SCOP:
a.264.1.1 a.264.1.1 PDB: 1zrl_A*
Length = 602
Score = 28.8 bits (64), Expect = 9.8
Identities = 20/152 (13%), Positives = 34/152 (22%), Gaps = 23/152 (15%)
Query: 722 EKKKKKKKKKKKKKKKKKKKKKKK-----------------------KKKYSNEEEGMRK 758
E+ + K K K K + +K K+Y ++
Sbjct: 190 ERDNRAKLPKSKCKNNALYEACEKECIDPCMKYRDWIIRSKFEWHTLSKEYETQKVPKEN 249
Query: 759 LRDAASIQCGPVKEVPCEPQIAPCLFDIKNDPCEKNNLADRSEVQRINHYTTEVGYLDPK 818
+ + + C + K+ V N T +
Sbjct: 250 AENYLIKISENKNDAKVSLLLNNCDAEYSKYCDCKHTTTLVKSVLNGNDNTIKEKREHID 309
Query: 819 QRFNQIAYLDKEKKKKKKKKKKKKKKKKKKKK 850
DK K + KK K K
Sbjct: 310 LDDFSKFGCDKNSVDTNTKVWECKKPYKLSTK 341
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.133 0.403
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,269,283
Number of extensions: 909365
Number of successful extensions: 11184
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8088
Number of HSP's successfully gapped: 916
Length of query: 905
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 803
Effective length of database: 3,853,851
Effective search space: 3094642353
Effective search space used: 3094642353
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.4 bits)