BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10880
(166 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VJ2|A Chain A, Human Jagged-1, Domains Dsl And Egfs1-3
pdb|2VJ2|B Chain B, Human Jagged-1, Domains Dsl And Egfs1-3
Length = 169
Score = 65.9 bits (159), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 85 VTCDPHYYGNGCATLCRPRDDSFGHYTCSHTGDRKCLPGWSGDYCTKAV--QKLSPTKA 141
VTCD +YYG GC CRPRDD FGHY C G++ C+ GW G C +A+ Q SP
Sbjct: 19 VTCDDYYYGFGCNKFCRPRDDFFGHYACDQNGNKTCMEGWMGPECNRAICRQGCSPKHG 77
>pdb|1Y28|A Chain A, Crystal Structure Of The R220a Metbjfixl Heme Domain
Length = 131
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 73 KSAHSSMLYEYRVTCDPHYYGNGCATLCRPRD 104
+S H S + YR T DPH G G + RD
Sbjct: 58 RSRHDSYISRYRTTSDPHIIGIGAIVTGKRRD 89
>pdb|1XJ2|A Chain A, Co-Bound Structure Of Bjfixlh
pdb|1XJ3|A Chain A, Bjfixlh In Unliganded Ferrous Form
pdb|2OWH|A Chain A, Structure Of An Early-microsecond Photolyzed State Of Co-
Bjfixlh
pdb|2OWJ|A Chain A, Structure Of An Early-Microsecond Photolyzed State Of Co-
Bjfixlh, Dark State
Length = 116
Score = 30.4 bits (67), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 73 KSAHSSMLYEYRVTCDPHYYGNGCATLCRPRD 104
+S H S + YR T DPH G G + RD
Sbjct: 44 RSRHDSYISRYRTTSDPHIIGIGRIVTGKRRD 75
>pdb|1DRM|A Chain A, Crystal Structure Of The Ligand Free Bjfixl Heme Domain
pdb|1DP8|A Chain A, Crystal Structure Of The Nitric Oxide Bound Fixl Heme
Domain
pdb|1DP9|A Chain A, Crystal Structure Of Imidazole-Bound Fixl Heme Domain
pdb|1DP6|A Chain A, Oxygen-Binding Complex Of Fixl Heme Domain
pdb|1LSV|A Chain A, Crystal Structure Of The Co-Bound Bjfixl Heme Domain
pdb|1LSW|A Chain A, Crystal Structure Of The Ferrous Bjfixl Heme Domain
pdb|1LSX|A Chain A, Crystal Structure Of The Methylimidazole-Bound Bjfixl Heme
Domain
pdb|1LT0|A Chain A, Crystal Structure Of The Cn-Bound Bjfixl Heme Domain
Length = 131
Score = 30.4 bits (67), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 73 KSAHSSMLYEYRVTCDPHYYGNGCATLCRPRD 104
+S H S + YR T DPH G G + RD
Sbjct: 58 RSRHDSYISRYRTTSDPHIIGIGRIVTGKRRD 89
>pdb|1XJ4|A Chain A, Co-Bound Structure Of Bjfixlh
pdb|1XJ4|B Chain B, Co-Bound Structure Of Bjfixlh
pdb|1XJ6|A Chain A, Structure Of Bjfixlh In The Unliganded Ferrous Form
pdb|1XJ6|B Chain B, Structure Of Bjfixlh In The Unliganded Ferrous Form
pdb|2VV6|A Chain A, Bjfixlh In Ferric Form
pdb|2VV6|B Chain B, Bjfixlh In Ferric Form
pdb|2VV6|C Chain C, Bjfixlh In Ferric Form
pdb|2VV6|D Chain D, Bjfixlh In Ferric Form
pdb|2VV7|A Chain A, Bjfixlh In Unliganded Ferrous Form
pdb|2VV7|B Chain B, Bjfixlh In Unliganded Ferrous Form
pdb|2VV7|C Chain C, Bjfixlh In Unliganded Ferrous Form
pdb|2VV7|D Chain D, Bjfixlh In Unliganded Ferrous Form
pdb|2VV8|A Chain A, Co-Bound Structure Of Bjfixlh
pdb|2VV8|B Chain B, Co-Bound Structure Of Bjfixlh
pdb|2VV8|C Chain C, Co-Bound Structure Of Bjfixlh
pdb|2VV8|D Chain D, Co-Bound Structure Of Bjfixlh
Length = 119
Score = 30.4 bits (67), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 73 KSAHSSMLYEYRVTCDPHYYGNGCATLCRPRD 104
+S H S + YR T DPH G G + RD
Sbjct: 47 RSRHDSYISRYRTTSDPHIIGIGRIVTGKRRD 78
>pdb|2CMN|A Chain A, A Proximal Arginine Residue In The Switching Mechanism Of
The Fixl Oxygen Sensor
Length = 130
Score = 30.0 bits (66), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 73 KSAHSSMLYEYRVTCDPHYYGNGCATLCRPRD 104
+S H S + YR T DPH G G + RD
Sbjct: 57 RSRHDSYISAYRTTSDPHIIGIGRIVTGKRRD 88
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 29.3 bits (64), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 107 FGHYTCSHTGDRKCLPGWSGD-YCTKAVQKLSPTKA-----LPNRTSRTLFCV 153
+GH SH G CL G + D CT V +P K P +T R++F V
Sbjct: 150 YGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGV 202
>pdb|2WFT|A Chain A, Crystal Structure Of The Human Hip Ectodomain
pdb|2WFT|B Chain B, Crystal Structure Of The Human Hip Ectodomain
Length = 458
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 79 MLYEYRVTCDP-HYYGNGCATLCRPRDDSFGHYTCSHTGDRKCLPGWSGDYCTKA 132
M E R T P + C+ LCR + C+ TG C PGW GD+C A
Sbjct: 377 MPEECRATVQPAQTLTSECSRLCR-------NGYCTPTGKCCCSPGWEGDFCRTA 424
>pdb|3HO3|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
pdb|3HO5|A Chain A, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
pdb|3HO5|B Chain B, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
Length = 481
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 7/37 (18%)
Query: 96 CATLCRPRDDSFGHYTCSHTGDRKCLPGWSGDYCTKA 132
C+ LCR + C+ TG C PGW GD+C A
Sbjct: 416 CSRLCR-------NGYCTPTGKCCCSPGWEGDFCRTA 445
>pdb|2WG3|C Chain C, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
pdb|2WG3|D Chain D, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
Length = 463
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 79 MLYEYRVTCDP-HYYGNGCATLCRPRDDSFGHYTCSHTGDRKCLPGWSGDYCTKA 132
M E R T P + C+ LCR + C+ TG C PGW GD+C A
Sbjct: 377 MPEECRATVQPAQTLTSECSRLCR-------NGYCTPTGKCCCSPGWEGDFCRTA 424
>pdb|2WFX|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog In The
Presence Of Calcium
pdb|2WG4|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog Without
Calcium
Length = 457
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 79 MLYEYRVTCDP-HYYGNGCATLCRPRDDSFGHYTCSHTGDRKCLPGWSGDYCTKA 132
M E R T P + C+ LCR + C+ TG C PGW GD+C A
Sbjct: 377 MPEECRATVQPAQTLTSECSRLCR-------NGYCTPTGKCCCSPGWEGDFCRTA 424
>pdb|1HXN|A Chain A, 1.8 Angstroms Crystal Structure Of The C-Terminal Domain
Of Rabbit Serum Hemopexin
Length = 219
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 89 PHYYGNGCATLCRPRDDSFGHYTCSHTGDRKCLPGWSGDYCTKAVQKLSPTKAL--PNRT 146
PH +G + +P G +CS +G L YC + V KL+ K L P R
Sbjct: 156 PHEKVDGALCMEKP----LGPNSCSTSGPNLYLIHGPNLYCYRHVDKLNAAKNLPQPQRV 211
Query: 147 SRTLFC 152
SR L C
Sbjct: 212 SRLLGC 217
>pdb|3HO4|A Chain A, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
pdb|3HO4|B Chain B, Crystal Structure Of Hedgehog-Interacting Protein (Hhip)
Length = 481
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 7/37 (18%)
Query: 96 CATLCRPRDDSFGHYTCSHTGDRKCLPGWSGDYCTKA 132
C+ LCR + C+ TG C PGW GD+C A
Sbjct: 416 CSRLCR-------NGYCTPTGKCCCSPGWEGDFCRTA 445
>pdb|1QHU|A Chain A, Mammalian Blood Serum Haemopexin Deglycosylated And In
Complex With Its Ligand Haem
pdb|1QJS|A Chain A, Mammalian Blood Serum Haemopexin Glycosylated-Native
Protein And In Complex With Its Ligand Haem
pdb|1QJS|B Chain B, Mammalian Blood Serum Haemopexin Glycosylated-Native
Protein And In Complex With Its Ligand Haem
Length = 460
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 89 PHYYGNGCATLCRPRDDSFGHYTCSHTGDRKCLPGWSGDYCTKAVQKLSPTKAL--PNRT 146
PH +G + +P G +CS +G L YC + V KL+ K L P R
Sbjct: 397 PHEKVDGALCMEKP----LGPNSCSTSGPNLYLIHGPNLYCYRHVDKLNAAKNLPQPQRV 452
Query: 147 SRTLFC 152
SR L C
Sbjct: 453 SRLLGC 458
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.465
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,563,911
Number of Sequences: 62578
Number of extensions: 164697
Number of successful extensions: 283
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 265
Number of HSP's gapped (non-prelim): 38
length of query: 166
length of database: 14,973,337
effective HSP length: 92
effective length of query: 74
effective length of database: 9,216,161
effective search space: 681995914
effective search space used: 681995914
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)