RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10880
(166 letters)
>gnl|CDD|144855 pfam01414, DSL, Delta serrate ligand.
Length = 63
Score = 89.0 bits (221), Expect = 4e-24
Identities = 34/63 (53%), Positives = 43/63 (68%)
Query: 67 WTEDEHKSAHSSMLYEYRVTCDPHYYGNGCATLCRPRDDSFGHYTCSHTGDRKCLPGWSG 126
W+ D H +++ Y+ RVTCD +YYG GC CRPRDD FGHYTC G+++CL GW G
Sbjct: 1 WSTDLHIVGRTNLEYQIRVTCDENYYGEGCNKFCRPRDDFFGHYTCDENGNKRCLNGWMG 60
Query: 127 DYC 129
YC
Sbjct: 61 PYC 63
>gnl|CDD|128366 smart00051, DSL, delta serrate ligand.
Length = 63
Score = 82.8 bits (205), Expect = 8e-22
Identities = 34/63 (53%), Positives = 41/63 (65%)
Query: 67 WTEDEHKSAHSSMLYEYRVTCDPHYYGNGCATLCRPRDDSFGHYTCSHTGDRKCLPGWSG 126
W+ D H + + Y+ RVTCD +YYG GC CRPRDD FGHYTC G++ CL GW G
Sbjct: 1 WSTDLHIGGRTFLEYQIRVTCDENYYGEGCNKFCRPRDDFFGHYTCDENGNKGCLEGWMG 60
Query: 127 DYC 129
YC
Sbjct: 61 PYC 63
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein.
This family represents Cwf15/Cwc15 (from
Schizosaccharomyces pombe and Saccharomyces cerevisiae
respectively) and their homologues. The function of
these proteins is unknown, but they form part of the
spliceosome and are thus thought to be involved in mRNA
splicing.
Length = 241
Score = 50.5 bits (121), Expect = 4e-08
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D N+D DD D D D DDD DDDD +D+
Sbjct: 111 EEDARNSDADDSDSSSDSDSSDDDSDDDDSEDET 144
Score = 45.1 bits (107), Expect = 4e-06
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
A + + DD D D D DDD DDDD +D+
Sbjct: 114 ARNSDADDSDSSSDSDSSDDDSDDDDSEDETAA 146
Score = 43.9 bits (104), Expect = 7e-06
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
++D + D DD D D D DDD DDDD ++
Sbjct: 110 IEEDARNSDADDSDSSSDSDSSDDDSDDDDSED 142
Score = 40.5 bits (95), Expect = 1e-04
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ + + D DD D D D DDD DDDD
Sbjct: 109 RIEEDARNSDADDSDSSSDSDSSDDDSDDDDS 140
Score = 34.3 bits (79), Expect = 0.017
Identities = 17/48 (35%), Positives = 18/48 (37%), Gaps = 19/48 (39%)
Query: 15 NNDDDDD-------------------DDDDDDDDDDDDDDDDDDDDDE 43
D+DDD DD D D D DDD DDDD E
Sbjct: 94 EGDEDDDEEDEIKRKRIEEDARNSDADDSDSSSDSDSSDDDSDDDDSE 141
Score = 33.2 bits (76), Expect = 0.041
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 15/49 (30%)
Query: 10 MADDDNNDDDDDDDDD---------------DDDDDDDDDDDDDDDDDE 43
D +N+ D+DDD++ D DD D D D DDD
Sbjct: 87 TNLDASNEGDEDDDEEDEIKRKRIEEDARNSDADDSDSSSDSDSSDDDS 135
>gnl|CDD|237047 PRK12298, obgE, GTPase CgtA; Reviewed.
Length = 390
Score = 50.6 bits (122), Expect = 5e-08
Identities = 17/36 (47%), Positives = 26/36 (72%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
M DD + + ++ +++DDDD DDD D+DDD+ EVI
Sbjct: 352 MWDDYHREQLEEVEEEDDDDWDDDWDEDDDEGVEVI 387
Score = 45.6 bits (109), Expect = 3e-06
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
Query: 4 VDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
V+ W DD + + ++ +++DDDD DDD D+DDD+ +I
Sbjct: 349 VEFMW----DDYHREQLEEVEEEDDDDWDDDWDEDDDEGVEVI 387
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 50.4 bits (121), Expect = 6e-08
Identities = 25/36 (69%), Positives = 29/36 (80%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
DDD +DDD DDDDDD+DDD+DDDDDD DD+DE
Sbjct: 138 DDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKK 173
Score = 48.8 bits (117), Expect = 3e-07
Identities = 25/39 (64%), Positives = 31/39 (79%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D + DDD+ DDDD DDDDDD+DDD+DDDDDD DD++
Sbjct: 131 DDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDED 169
Score = 47.7 bits (114), Expect = 6e-07
Identities = 20/35 (57%), Positives = 28/35 (80%)
Query: 9 WMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ DDD +DDDDD+DDD+DDDDDD DD+D++ +
Sbjct: 141 DLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEA 175
Score = 47.3 bits (113), Expect = 9e-07
Identities = 23/36 (63%), Positives = 29/36 (80%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
DD ++DD DDDDDD+DDD+DDDDDD DD+D+E
Sbjct: 138 DDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKK 173
Score = 46.5 bits (111), Expect = 2e-06
Identities = 25/34 (73%), Positives = 29/34 (85%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
DDD++ DDDD DDDDDD+DDD+DDDDDD DDE
Sbjct: 136 DDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDED 169
Score = 45.8 bits (109), Expect = 3e-06
Identities = 26/33 (78%), Positives = 31/33 (93%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
DDD++DDDD DDDD DDDDDD+DDD+DDDDD+V
Sbjct: 133 DDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDV 165
Score = 45.0 bits (107), Expect = 6e-06
Identities = 25/34 (73%), Positives = 30/34 (88%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DDD++DDDDD DDDD DDDDDD+DDD+DDDD+
Sbjct: 130 ADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDD 163
Score = 44.6 bits (106), Expect = 6e-06
Identities = 17/33 (51%), Positives = 26/33 (78%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DDD++D+DDD+DDDDDD DD+D++ + + E
Sbjct: 147 IDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELE 179
Score = 43.8 bits (104), Expect = 1e-05
Identities = 24/33 (72%), Positives = 26/33 (78%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D N DDDDDDDDDDD DDDD DDDDDD+D+
Sbjct: 124 IDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDD 156
Score = 43.8 bits (104), Expect = 1e-05
Identities = 19/39 (48%), Positives = 29/39 (74%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D + DD ++DDDD+DDD+DDDDDD DD+D++ + +
Sbjct: 138 DDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAK 176
Score = 43.4 bits (103), Expect = 2e-05
Identities = 22/32 (68%), Positives = 28/32 (87%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ ++DDDDDDDDD DDDD DDDDDD+DDD++
Sbjct: 128 NQADDDDDDDDDDDLDDDDIDDDDDDEDDDED 159
Score = 43.4 bits (103), Expect = 2e-05
Identities = 23/32 (71%), Positives = 28/32 (87%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D++DDDDDDDD DDDD DDDDDD+DDD+D+
Sbjct: 129 QADDDDDDDDDDDLDDDDIDDDDDDEDDDEDD 160
Score = 43.4 bits (103), Expect = 2e-05
Identities = 15/33 (45%), Positives = 27/33 (81%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
DDD+++DDD+DDDDDD DD+D++ + + +++
Sbjct: 149 DDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKL 181
Score = 43.1 bits (102), Expect = 2e-05
Identities = 23/34 (67%), Positives = 25/34 (73%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D N DDDDDDDDDDD DDDD DDDDDD++
Sbjct: 122 KDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDED 155
Score = 42.7 bits (101), Expect = 3e-05
Identities = 24/35 (68%), Positives = 29/35 (82%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
DD++DDDDDDD DDDD DDDDDD+DDD+DD+
Sbjct: 128 NQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDD 162
Score = 42.3 bits (100), Expect = 4e-05
Identities = 24/34 (70%), Positives = 27/34 (79%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
+ +DDDDDDDDDD DDDD DDDDDD+DDDE
Sbjct: 126 VLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDED 159
Score = 42.3 bits (100), Expect = 5e-05
Identities = 24/34 (70%), Positives = 25/34 (73%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
D D + DDDDDDDDDDD DDDD DDDDDDE
Sbjct: 122 KDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDED 155
Score = 41.9 bits (99), Expect = 6e-05
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D + DDD +DD+DDDDDD DD+D++ + + +
Sbjct: 144 DDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLS 182
Score = 41.5 bits (98), Expect = 8e-05
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
+DD+ DDDDDD DD+D++ + + + DD+
Sbjct: 153 DEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDF 187
Score = 41.1 bits (97), Expect = 1e-04
Identities = 20/34 (58%), Positives = 23/34 (67%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
D + + DDDDDDDDDDD DDDD DDDD+
Sbjct: 120 YVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDD 153
Score = 39.6 bits (93), Expect = 3e-04
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
DDD++D DD+D++ + + + DDDD +
Sbjct: 159 DDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDED 192
Score = 38.8 bits (91), Expect = 6e-04
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DD+++D+DDDDDD DD+D++ + + + +
Sbjct: 152 DDEDDDEDDDDDDVDDEDEEKKEAKELEKLSD 183
Score = 38.4 bits (90), Expect = 8e-04
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+DD++DD DD+D++ + + + DDDD
Sbjct: 156 DDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVW 189
Score = 38.1 bits (89), Expect = 0.001
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DDD++ DD+D++ + + + DDDD DE
Sbjct: 159 DDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDE 191
Score = 37.7 bits (88), Expect = 0.002
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D D+ D++ + + + DDDD D+DD E
Sbjct: 164 DVDDEDEEKKEAKELEKLSDDDDFVWDEDDSE 195
Score = 37.3 bits (87), Expect = 0.002
Identities = 20/34 (58%), Positives = 21/34 (61%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DD N D D + DDDDDDDDDDD DDDD
Sbjct: 114 KDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDI 147
Score = 36.9 bits (86), Expect = 0.002
Identities = 20/36 (55%), Positives = 23/36 (63%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
DDD N D D + DDDDDDDDDDD DDD++
Sbjct: 114 KDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDD 149
Score = 36.9 bits (86), Expect = 0.003
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
DDD +D+D++ + + + DDDD D+D+
Sbjct: 161 DDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEA 196
Score = 36.5 bits (85), Expect = 0.003
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DDD+ DD+D++ + + + DDDD D++
Sbjct: 160 DDDDDVDDEDEEKKEAKELEKLSDDDDFVWDED 192
Score = 35.7 bits (83), Expect = 0.006
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLT 56
DD +++D++ + + + DDDD D+DD + ++LT
Sbjct: 163 DDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQARKDAKLT 207
Score = 35.7 bits (83), Expect = 0.007
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ + D + DDDDDDDDDDD DDDD DD+
Sbjct: 118 LNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDD 150
Score = 34.2 bits (79), Expect = 0.024
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
DD+ + D D + DDDDDDDDDDD DD+ I
Sbjct: 113 DKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDI 147
Score = 33.8 bits (78), Expect = 0.028
Identities = 16/32 (50%), Positives = 19/32 (59%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
D +DD + D D + DDDDDDDDDDD
Sbjct: 110 NALDKDDDLNYVKDIDVLNQADDDDDDDDDDD 141
Score = 32.3 bits (74), Expect = 0.093
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
A D ++D + D D + DDDDDDDDDDD +
Sbjct: 111 ALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDD 145
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit.
Transcription initiation factor IIA (TFIIA) is a
heterotrimer, the three subunits being known as alpha,
beta, and gamma, in order of molecular weight. The N and
C-terminal domains of the gamma subunit are represented
in pfam02268 and pfam02751, respectively. This family
represents the precursor that yields both the alpha and
beta subunits. The TFIIA heterotrimer is an essential
general transcription initiation factor for the
expression of genes transcribed by RNA polymerase II.
Together with TFIID, TFIIA binds to the promoter region;
this is the first step in the formation of a
pre-initiation complex (PIC). Binding of the rest of the
transcription machinery follows this step. After
initiation, the PIC does not completely dissociate from
the promoter. Some components, including TFIIA, remain
attached and re-initiate a subsequent round of
transcription.
Length = 332
Score = 49.0 bits (117), Expect = 2e-07
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Query: 1 MMMVDGEWWMADDDNNDDDDDDDD-----DDDDDDDDDDDDDDDDDDEVIITC 48
+ +DG + D +DDDDD+D DD DDD D+D +D D + ++ C
Sbjct: 241 IAQIDGIDSDDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDLFDTDNVMLC 293
Score = 37.8 bits (88), Expect = 0.001
Identities = 16/40 (40%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDD-----DDDDDDEVI 45
D D DD+ D DDDDD+D DD DDD
Sbjct: 239 RTIAQIDGIDSDDEGDGSDDDDDEDAIESDLDDSDDDVSD 278
Score = 34.7 bits (80), Expect = 0.013
Identities = 12/34 (35%), Positives = 14/34 (41%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
A D D DD+ D DDDDD+D
Sbjct: 232 QAKSSKRRTIAQIDGIDSDDEGDGSDDDDDEDAI 265
Score = 33.9 bits (78), Expect = 0.025
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 15 NNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D D DD+ D DDDDD+D E
Sbjct: 238 RRTIAQIDGIDSDDEGDGSDDDDDEDAIE 266
Score = 33.2 bits (76), Expect = 0.045
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 15 NNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
+ D D DD+ D DDDDD+D +
Sbjct: 236 SKRRTIAQIDGIDSDDEGDGSDDDDDEDAI 265
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457). This
is a family of uncharacterized proteins.
Length = 449
Score = 48.8 bits (116), Expect = 3e-07
Identities = 24/32 (75%), Positives = 30/32 (93%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DDD DDDDDDD+D+DDDDDDDD+DD+D+DD+
Sbjct: 54 DDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDD 85
Score = 48.1 bits (114), Expect = 4e-07
Identities = 23/32 (71%), Positives = 30/32 (93%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
DD+ +DDDDDD+D+DDDDDDDD+DD+D+DDD
Sbjct: 54 DDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDD 85
Score = 48.1 bits (114), Expect = 4e-07
Identities = 21/34 (61%), Positives = 31/34 (91%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
++D++DDDD+D+DDDDDDDD+DD+D+DDDD +
Sbjct: 56 DEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTL 89
Score = 47.3 bits (112), Expect = 7e-07
Identities = 22/35 (62%), Positives = 32/35 (91%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
D++++DDDDD+D+DDDDDDDD+DD+D+DDDD +
Sbjct: 55 DDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTL 89
Score = 45.8 bits (108), Expect = 3e-06
Identities = 22/32 (68%), Positives = 31/32 (96%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+DD+ +DDDDDDD+D+DDDDDDDD+DD+D+D+
Sbjct: 53 EDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDD 84
Score = 45.4 bits (107), Expect = 3e-06
Identities = 21/33 (63%), Positives = 32/33 (96%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
M ++D++++DDDDDDD+D+DDDDDDDD+DD+D+
Sbjct: 50 MEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDE 82
Score = 45.4 bits (107), Expect = 3e-06
Identities = 21/33 (63%), Positives = 31/33 (93%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
A ++ +DD++DDDDDDD+D+DDDDDDDD+DD++
Sbjct: 49 AMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDED 81
Score = 45.4 bits (107), Expect = 4e-06
Identities = 21/32 (65%), Positives = 32/32 (100%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+++++D++DDDDDDD+D+DDDDDDDD+DD+DE
Sbjct: 51 EEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDE 82
Score = 43.4 bits (102), Expect = 2e-05
Identities = 20/28 (71%), Positives = 27/28 (96%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
+DDD++DDDDDDD+D+DDDDDDDD+D+
Sbjct: 53 EDDDEEDDDDDDDEDEDDDDDDDDEDDE 80
Score = 43.4 bits (102), Expect = 2e-05
Identities = 23/39 (58%), Positives = 28/39 (71%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D E DDD+ D+DDDDDDDD+DD+D+DDDD DD
Sbjct: 55 DDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDS 93
Score = 43.4 bits (102), Expect = 2e-05
Identities = 20/32 (62%), Positives = 25/32 (78%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DDD ++DDDDDDDD+DD+D+DDDD DD
Sbjct: 63 DDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSS 94
Score = 42.7 bits (100), Expect = 3e-05
Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DD++ DDDDDDDD+DD+D+DDDD DD
Sbjct: 63 DDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSA 95
Score = 40.7 bits (95), Expect = 1e-04
Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D + +D+++DDDDDD+DD+D+DDDD DD D+
Sbjct: 59 DDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSADD 97
Score = 37.7 bits (87), Expect = 0.001
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DDD++DDD+DD+D+DDDD DD DD +E
Sbjct: 68 EDDDDDDDDEDDEDEDDDDSTLHDDSSADDGNE 100
Score = 35.7 bits (82), Expect = 0.007
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
DDD+ DD+D+DDDD DD DD ++ D+E
Sbjct: 72 DDDDDEDDEDEDDDDSTLHDDSSADDGNETDNEA 105
Score = 35.0 bits (80), Expect = 0.014
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 4 VDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDD 38
D E DDD++D+DD+D+DDDD DD DD
Sbjct: 63 DDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSADD 97
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region. The
domain is found in the primary vegetative sigma factor.
The function of this domain is unclear and can be
removed without loss of function.
Length = 211
Score = 47.2 bits (113), Expect = 4e-07
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
A + + D++D +DDDDDD+D+D+DD++E
Sbjct: 38 AATAAAIESELDEEDLEDDDDDDEDEDEDDEEE 70
Score = 45.3 bits (108), Expect = 3e-06
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 4 VDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+D A + + D++D +DDDDDD+D+D+DD+E
Sbjct: 30 IDPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEE 69
Score = 44.5 bits (106), Expect = 4e-06
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
A + + D++D +DDDDDD+D+D+DD+++
Sbjct: 39 ATAAAIESELDEEDLEDDDDDDEDEDEDDEEEA 71
Score = 44.5 bits (106), Expect = 4e-06
Identities = 13/29 (44%), Positives = 23/29 (79%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
+ D++D +DDDDDD+D+D+DD+++ D
Sbjct: 47 ELDEEDLEDDDDDDEDEDEDDEEEADLGP 75
Score = 44.5 bits (106), Expect = 5e-06
Identities = 12/27 (44%), Positives = 23/27 (85%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ D++D +DDDDDD+D+D+DD+++ +
Sbjct: 46 SELDEEDLEDDDDDDEDEDEDDEEEAD 72
Score = 43.7 bits (104), Expect = 7e-06
Identities = 14/33 (42%), Positives = 25/33 (75%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
A ++ D++D +DDDDDD+D+D+DD+++ D
Sbjct: 42 AAIESELDEEDLEDDDDDDEDEDEDDEEEADLG 74
Score = 43.7 bits (104), Expect = 9e-06
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
++ D D +DDDDDD+D+D+DD+++ D D E
Sbjct: 46 SELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEE 79
Score = 43.7 bits (104), Expect = 9e-06
Identities = 14/31 (45%), Positives = 24/31 (77%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDD 40
A + D++D +DDDDDD+D+D+DD+++ D
Sbjct: 42 AAIESELDEEDLEDDDDDDEDEDEDDEEEAD 72
Score = 42.6 bits (101), Expect = 2e-05
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
+ + +D +DDDDDD+D+D+DD+++ D D
Sbjct: 45 ESELDEEDLEDDDDDDEDEDEDDEEEADLGPD 76
Score = 41.8 bits (99), Expect = 5e-05
Identities = 14/36 (38%), Positives = 24/36 (66%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
D+ + +DDDDDD+D+D+DD+++ D D +E
Sbjct: 46 SELDEEDLEDDDDDDEDEDEDDEEEADLGPDPEEAR 81
>gnl|CDD|240226 PTZ00007, PTZ00007, (NAP-L) nucleosome assembly protein -L;
Provisional.
Length = 337
Score = 47.5 bits (113), Expect = 6e-07
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 4 VDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+D + + D+++DD D D D D + D D +++D+
Sbjct: 280 IDEDSDYSSDEDDDDYDSYDSSDSASSDSNSDVDTNEEDD 319
Score = 44.4 bits (105), Expect = 7e-06
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 7 EWWM--ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
W++ A D+++D D+DDDD D D D D + +V
Sbjct: 273 YWFLGEAIDEDSDYSSDEDDDDYDSYDSSDSASSDSNSDV 312
Score = 44.4 bits (105), Expect = 7e-06
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D ++ +DD++ D D D D + D D +++DD
Sbjct: 283 DSDYSSDEDDDDYDSYDSSDSASSDSNSDVDTNEEDDRG 321
Score = 42.9 bits (101), Expect = 3e-05
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DDD+ D D D D + D D +++DD E
Sbjct: 290 EDDDDYDSYDSSDSASSDSNSDVDTNEEDDRGE 322
Score = 42.1 bits (99), Expect = 5e-05
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DD ++ D D D + D D +++DD + E
Sbjct: 293 DDYDSYDSSDSASSDSNSDVDTNEEDDRGEKE 324
Score = 39.4 bits (92), Expect = 4e-04
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D D+ D D D + D D +++DD + +
Sbjct: 294 DYDSYDSSDSASSDSNSDVDTNEEDDRGEKES 325
Score = 35.9 bits (83), Expect = 0.005
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDD 41
D++D D + D D +++DD + + +
Sbjct: 297 SYDSSDSASSDSNSDVDTNEEDDRGEKESN 326
Score = 35.9 bits (83), Expect = 0.006
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
D ++ D D + D D +++DD + + +
Sbjct: 295 YDSYDSSDSASSDSNSDVDTNEEDDRGEKESN 326
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to
be DNA-binding and may be a transcription factor.
Length = 238
Score = 46.6 bits (111), Expect = 1e-06
Identities = 10/32 (31%), Positives = 23/32 (71%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D++ ++++++++ D D DD +DD+ + DDE
Sbjct: 40 DEEFEIEEEEEEEEVDSDFDDSEDDEPESDDE 71
Score = 46.6 bits (111), Expect = 1e-06
Identities = 9/32 (28%), Positives = 23/32 (71%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
++ ++++++++ D D DD +DD+ + DD+E
Sbjct: 41 EEFEIEEEEEEEEVDSDFDDSEDDEPESDDEE 72
Score = 45.4 bits (108), Expect = 2e-06
Identities = 11/35 (31%), Positives = 24/35 (68%), Gaps = 3/35 (8%)
Query: 12 DDD---NNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DD+ +++++++ D D DD +DD+ + DD++E
Sbjct: 39 DDEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEE 73
Score = 42.0 bits (99), Expect = 4e-05
Identities = 9/31 (29%), Positives = 21/31 (67%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ +++++ D D DD +DD+ + DD+++ E
Sbjct: 45 IEEEEEEEEVDSDFDDSEDDEPESDDEEEGE 75
Score = 41.6 bits (98), Expect = 5e-05
Identities = 8/39 (20%), Positives = 23/39 (58%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ +DD + ++++++++ D D DD +DD+ + +
Sbjct: 31 YLLFEEEEDDEEFEIEEEEEEEEVDSDFDDSEDDEPESD 69
Score = 41.6 bits (98), Expect = 5e-05
Identities = 7/32 (21%), Positives = 23/32 (71%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
++ +D++ + ++++++++ D D DD +DD+
Sbjct: 36 EEEDDEEFEIEEEEEEEEVDSDFDDSEDDEPE 67
Score = 40.4 bits (95), Expect = 1e-04
Identities = 9/43 (20%), Positives = 26/43 (60%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISR 54
++ ++++ D D DD +DD+ + DD+++ ++ + + L +
Sbjct: 45 IEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKELQREERLKKK 87
Score = 40.4 bits (95), Expect = 1e-04
Identities = 10/34 (29%), Positives = 23/34 (67%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDD 38
D E+ + +++ ++ D D DD +DD+ + DD+++
Sbjct: 40 DEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEE 73
Score = 39.3 bits (92), Expect = 4e-04
Identities = 8/29 (27%), Positives = 20/29 (68%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDD 39
+++ +++ D D DD +DD+ + DD+++
Sbjct: 45 IEEEEEEEEVDSDFDDSEDDEPESDDEEE 73
Score = 38.9 bits (91), Expect = 4e-04
Identities = 9/40 (22%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDD-DDDDDE 43
D +W ++DD++ + ++++++++ D D DD +D+
Sbjct: 25 DEFFWTYLLFEEEEDDEEFEIEEEEEEEEVDSDFDDSEDD 64
Score = 31.2 bits (71), Expect = 0.16
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 3 MVDGEWWMADDDNNDDDDDDDDDDDDDDD 31
+ + E D + DD +DD+ + DD+++
Sbjct: 45 IEEEEEEEEVDSDFDDSEDDEPESDDEEE 73
Score = 31.2 bits (71), Expect = 0.17
Identities = 5/36 (13%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query: 12 DDDNNDDDDDDDDD---DDDDDDDDDDDDDDDDDEV 44
+++ +D+ +++DD++ + +++++++EV
Sbjct: 19 EEELEEDEFFWTYLLFEEEEDDEEFEIEEEEEEEEV 54
Score = 31.2 bits (71), Expect = 0.18
Identities = 4/38 (10%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 11 ADDDNNDDDDDDD-----DDDDDDDDDDDDDDDDDDDE 43
++ D+ ++DD++ + ++++++++ D
Sbjct: 19 EEELEEDEFFWTYLLFEEEEDDEEFEIEEEEEEEEVDS 56
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin. Nucleoplasmins are also
known as chromatin decondensation proteins. They bind to
core histones and transfer DNA to them in a reaction
that requires ATP. This is thought to play a role in the
assembly of regular nucleosomal arrays.
Length = 146
Score = 45.0 bits (107), Expect = 1e-06
Identities = 12/28 (42%), Positives = 25/28 (89%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+D+ DDD++D++++DD++DDD+D+ +E
Sbjct: 110 EEDESDDDEEDEEEEDDEEDDDEDESEE 137
Score = 44.2 bits (105), Expect = 3e-06
Identities = 12/29 (41%), Positives = 25/29 (86%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
D+ DDD++D++++DD++DDD+D+ ++E
Sbjct: 112 DESDDDEEDEEEEDDEEDDDEDESEEEES 140
Score = 43.1 bits (102), Expect = 8e-06
Identities = 12/38 (31%), Positives = 31/38 (81%)
Query: 4 VDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDD 41
+ G+ +A +++ DDD++D++++DD++DDD+D+ +++
Sbjct: 101 ISGQHLVASEEDESDDDEEDEEEEDDEEDDDEDESEEE 138
Score = 38.5 bits (90), Expect = 3e-04
Identities = 11/24 (45%), Positives = 21/24 (87%)
Query: 22 DDDDDDDDDDDDDDDDDDDDDEVI 45
+D+ DDD++D++++DD++DDDE
Sbjct: 111 EDESDDDEEDEEEEDDEEDDDEDE 134
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein. CDC45 is an essential gene
required for initiation of DNA replication in S.
cerevisiae, forming a complex with MCM5/CDC46.
Homologues of CDC45 have been identified in human, mouse
and smut fungus among others.
Length = 583
Score = 46.5 bits (111), Expect = 1e-06
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
DDD+ + D++D++ +DD+DDDDDDDDDD
Sbjct: 126 DDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATR 161
Score = 45.0 bits (107), Expect = 5e-06
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DDD D++D++ +DD+DDDDDDDDDD
Sbjct: 126 DDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIA 159
Score = 43.8 bits (104), Expect = 1e-05
Identities = 19/49 (38%), Positives = 34/49 (69%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTTQRW 60
DDD++++ D++D++ +DD+DDDDDDDDD++ ++L R + W
Sbjct: 126 DDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLERRRRRREW 174
Score = 42.7 bits (101), Expect = 3e-05
Identities = 14/32 (43%), Positives = 27/32 (84%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
++D++DD++ D++D++ +DD+DDDDDDD+
Sbjct: 124 EEDDDDDEESDEEDEESSKSEDDEDDDDDDDD 155
Score = 42.7 bits (101), Expect = 4e-05
Identities = 13/35 (37%), Positives = 27/35 (77%)
Query: 9 WMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ ++++DDD++ D++D++ +DD+DDDDDD+
Sbjct: 120 YRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDD 154
Score = 31.5 bits (72), Expect = 0.17
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 7/39 (17%)
Query: 13 DDNNDDDDDDDDDDDDD-------DDDDDDDDDDDDDEV 44
DD + +++ D+ DD DDDDD++ D++D+E
Sbjct: 102 DDGDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEES 140
Score = 28.4 bits (64), Expect = 1.8
Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Query: 12 DDDNNDDDDDDDD------DDDDDDDDDDDDDDDDDDE 43
++ D+ DD +DDDDD++ D++D++
Sbjct: 106 IEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKS 143
Score = 27.6 bits (62), Expect = 3.7
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DD + +++ D+ DD D ++DDDDD++
Sbjct: 102 DDGDIEEELQDEPRYDDAYRDLEEDDDDDEES 133
Score = 26.9 bits (60), Expect = 5.8
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDD 30
D E + +D+DDDDDDDDDD
Sbjct: 134 DEEDEESSKSEDDEDDDDDDDDDDIA 159
>gnl|CDD|177433 PHA02608, 67, prohead core protein; Provisional.
Length = 80
Score = 42.1 bits (99), Expect = 7e-06
Identities = 23/32 (71%), Positives = 29/32 (90%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ +++DDD+DDDDDDD DD DDDDDDDD+DDE
Sbjct: 49 EPEDDDDDEDDDDDDDKDDKDDDDDDDDEDDE 80
>gnl|CDD|220441 pfam09849, DUF2076, Uncharacterized protein conserved in bacteria
(DUF2076). This domain, found in various hypothetical
prokaryotic proteins, has no known function. The domain,
however, is found in various periplasmic ligand-binding
sensor proteins.
Length = 234
Score = 43.9 bits (104), Expect = 7e-06
Identities = 17/30 (56%), Positives = 18/30 (60%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDD 40
D +N DDDD D DDDD DDDDDD
Sbjct: 204 GDQGSNGDDDDGGFADSGYDDDDMDDDDDD 233
Score = 43.9 bits (104), Expect = 8e-06
Identities = 17/32 (53%), Positives = 18/32 (56%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
A D + DDDD D DDDD DDDDDD
Sbjct: 202 AGGDQGSNGDDDDGGFADSGYDDDDMDDDDDD 233
Score = 43.9 bits (104), Expect = 9e-06
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
+D D + DDDD D DDDD DDD
Sbjct: 199 SDAAGGDQGSNGDDDDGGFADSGYDDDDMDDD 230
Score = 42.3 bits (100), Expect = 3e-05
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
A + + DDDD D DDDD DDDDD
Sbjct: 201 AAGGDQGSNGDDDDGGFADSGYDDDDMDDDDD 232
Score = 42.0 bits (99), Expect = 4e-05
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
+ + DDDD D DDDD DDDD
Sbjct: 200 DAAGGDQGSNGDDDDGGFADSGYDDDDMDDDD 231
Score = 41.2 bits (97), Expect = 7e-05
Identities = 15/29 (51%), Positives = 15/29 (51%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDD 33
D DDD D DDDD DDDDDD
Sbjct: 205 DQGSNGDDDDGGFADSGYDDDDMDDDDDD 233
Score = 40.4 bits (95), Expect = 1e-04
Identities = 14/37 (37%), Positives = 17/37 (45%)
Query: 6 GEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
G DDD++ D + DDDD D DDDD
Sbjct: 190 GINNYGDDDSDAAGGDQGSNGDDDDGGFADSGYDDDD 226
Score = 38.1 bits (89), Expect = 8e-04
Identities = 13/31 (41%), Positives = 14/31 (45%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
D D D + DDDD D DDDD D
Sbjct: 198 DSDAAGGDQGSNGDDDDGGFADSGYDDDDMD 228
Score = 38.1 bits (89), Expect = 8e-04
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 9 WMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
+ DD + D + DDDD D DDDD
Sbjct: 194 YGDDDSDAAGGDQGSNGDDDDGGFADSGYDDDDM 227
Score = 30.8 bits (70), Expect = 0.22
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D N+ DDD D D + DDDD +
Sbjct: 188 DTGINNYGDDDSDAAGGDQGSNGDDDDGGFAD 219
Score = 30.4 bits (69), Expect = 0.38
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDD 41
ADD ++ DDD D D + DDDD
Sbjct: 186 ADDTGINNYGDDDSDAAGGDQGSNGDDDDGG 216
Score = 27.7 bits (62), Expect = 2.5
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
DD ++ DDD D D + DDDD
Sbjct: 185 PADDTGINNYGDDDSDAAGGDQGSNGDDDDGG 216
Score = 26.6 bits (59), Expect = 5.9
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
A D+ ++ DDD D D + DDDD
Sbjct: 184 APADDTGINNYGDDDSDAAGGDQGSNGDDDDG 215
>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation
factor RRN3. This family consists of several eukaryotic
proteins which are homologous to the yeast RRN3 protein.
RRN3 is one of the RRN genes specifically required for
the transcription of rDNA by RNA polymerase I (Pol I) in
Saccharomyces cerevisiae.
Length = 554
Score = 44.2 bits (105), Expect = 1e-05
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIIT 47
DD +D++++ D+DDDD+DD D DDDDE
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESD 257
Score = 42.7 bits (101), Expect = 3e-05
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 4 VDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
V+ + + D D+ +++ D+DDDD+DD D DDDD++E
Sbjct: 216 VEIQNELDDIDDEEEERVLADEDDDDEDDMFDMDDDDEEES 256
Score = 41.5 bits (98), Expect = 7e-05
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE----VIITCKTLISRL 55
DD+ + D+DDDD+DD D DDDD+++ + T K + +L
Sbjct: 226 DDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVERTSTIKEVSEKL 273
Score = 36.5 bits (85), Expect = 0.004
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTT 57
+DD+++DD D DDDD+++ D + + EV ++ L T
Sbjct: 235 ADEDDDDEDDMFDMDDDDEEESDPEVERTSTIKEVSEKLDAIMDLLFT 282
>gnl|CDD|235033 PRK02363, PRK02363, DNA-directed RNA polymerase subunit delta;
Reviewed.
Length = 129
Score = 42.3 bits (100), Expect = 1e-05
Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
M DD+ DDD DDD D++D D++DD+D++DE
Sbjct: 95 MDGDDDIIDDDILPDDDFDEEDLDEEDDEDEEDE 128
Score = 41.5 bits (98), Expect = 2e-05
Identities = 17/32 (53%), Positives = 25/32 (78%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DDD DDD DDD D++D D++DD+D++D+E
Sbjct: 98 DDDIIDDDILPDDDFDEEDLDEEDDEDEEDEE 129
Score = 37.7 bits (88), Expect = 6e-04
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D +DD DDD DDD D++D D++DD+DE
Sbjct: 93 KFMDGDDDIIDDDILPDDDFDEEDLDEEDDEDE 125
Score = 36.9 bits (86), Expect = 0.001
Identities = 15/35 (42%), Positives = 27/35 (77%)
Query: 4 VDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDD 38
+DG+ + DDD DDD D++D D++DD+D++D++
Sbjct: 95 MDGDDDIIDDDILPDDDFDEEDLDEEDDEDEEDEE 129
Score = 32.7 bits (75), Expect = 0.037
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
D D DDD DDD DDD D++D
Sbjct: 86 KFDKKKKKFMDGDDDIIDDDILPDDDFDEED 116
Score = 29.6 bits (67), Expect = 0.44
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 23 DDDDDDDDDDDDDDDDDDDDEVIIT 47
D DDD DDD DDD DE +
Sbjct: 94 FMDGDDDIIDDDILPDDDFDEEDLD 118
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 43.4 bits (103), Expect = 2e-05
Identities = 14/32 (43%), Positives = 26/32 (81%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DDD ++++D D D+++D++D+D DD+DD+E
Sbjct: 339 DDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEE 370
Score = 43.4 bits (103), Expect = 2e-05
Identities = 13/34 (38%), Positives = 26/34 (76%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DD +++DDDDD +++++D D D+++D++DE
Sbjct: 328 DGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDE 361
Score = 43.4 bits (103), Expect = 2e-05
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 6/40 (15%)
Query: 11 ADDDNNDDDDD------DDDDDDDDDDDDDDDDDDDDDEV 44
D+D DDDDD D D D+++D++D+D DD+DDE
Sbjct: 331 DDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEE 370
Score = 42.3 bits (100), Expect = 5e-05
Identities = 13/34 (38%), Positives = 26/34 (76%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
+D +D+D++DDDDD +++++D D D+++DE
Sbjct: 326 EEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEE 359
Score = 41.1 bits (97), Expect = 1e-04
Identities = 12/32 (37%), Positives = 26/32 (81%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
++++ DD+D++DDDDD +++++D D D++E
Sbjct: 325 EEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEE 356
Score = 40.8 bits (96), Expect = 2e-04
Identities = 14/43 (32%), Positives = 29/43 (67%), Gaps = 10/43 (23%)
Query: 12 DDDNNDDDD----------DDDDDDDDDDDDDDDDDDDDDDEV 44
+D+ +DDDD D+++D++D+D DD+DD+++++E
Sbjct: 333 EDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEE 375
Score = 40.0 bits (94), Expect = 3e-04
Identities = 11/39 (28%), Positives = 28/39 (71%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKT 50
+++ + D D+++D++D+D DD+DD++++++E K
Sbjct: 344 EEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKK 382
Score = 39.6 bits (93), Expect = 4e-04
Identities = 12/33 (36%), Positives = 25/33 (75%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
++D +++D DD+D++DDDDD +++++D D
Sbjct: 319 GEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDL 351
Score = 39.6 bits (93), Expect = 4e-04
Identities = 11/41 (26%), Positives = 29/41 (70%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
D + + + ++++++D DD+D++DDDDD +++++D +
Sbjct: 311 DDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDL 351
Score = 39.6 bits (93), Expect = 4e-04
Identities = 12/32 (37%), Positives = 25/32 (78%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+++ + DD+D++DDDDD +++++D D D+E
Sbjct: 324 EEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEE 355
Score = 39.2 bits (92), Expect = 5e-04
Identities = 9/34 (26%), Positives = 28/34 (82%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
++++ D D+++D++D+D DD+DD++++++++
Sbjct: 344 EEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKE 377
Score = 39.2 bits (92), Expect = 5e-04
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 11/45 (24%)
Query: 11 ADDDNNDDDDDDDD-----------DDDDDDDDDDDDDDDDDDEV 44
ADD +++ + DDDD ++++D DD+D++DDDDD
Sbjct: 299 ADDLDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLE 343
Score = 38.8 bits (91), Expect = 6e-04
Identities = 12/40 (30%), Positives = 26/40 (65%)
Query: 4 VDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D + +D+++++D DD+D++DDDDD ++++E
Sbjct: 308 PDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEE 347
Score = 38.4 bits (90), Expect = 0.001
Identities = 17/41 (41%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 5 DGEWWMADDDN--NDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D E+ DDDN ++D+++++D DD+D++DDDDD E
Sbjct: 303 DDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLE 343
Score = 37.7 bits (88), Expect = 0.002
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 10/39 (25%)
Query: 16 NDDDDDDD----------DDDDDDDDDDDDDDDDDDDEV 44
DDD+D+ + D DDD DDDD DDDD
Sbjct: 107 EDDDEDEFVLTHLGQSLSEIDKDDDVRDDDDFDDDDLGD 145
Score = 37.3 bits (87), Expect = 0.002
Identities = 15/27 (55%), Positives = 16/27 (59%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ D DDD DDDD DDDD D DD
Sbjct: 125 EIDKDDDVRDDDDFDDDDLGDLASDDR 151
Score = 37.3 bits (87), Expect = 0.002
Identities = 12/36 (33%), Positives = 27/36 (75%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDD 40
D E D D +D+++D++D+D DD+DD+++++++
Sbjct: 341 DLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEK 376
Score = 36.9 bits (86), Expect = 0.003
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDD 39
+++ D +DD DDDD DDDD D DD
Sbjct: 123 LSEIDKDDDVRDDDDFDDDDLGDLASDDRA 152
Score = 36.1 bits (84), Expect = 0.006
Identities = 15/27 (55%), Positives = 15/27 (55%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDDDD 42
D DDD DDDD DDDD D DD
Sbjct: 125 EIDKDDDVRDDDDFDDDDLGDLASDDR 151
Score = 35.7 bits (83), Expect = 0.007
Identities = 15/26 (57%), Positives = 15/26 (57%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDD 42
D DDD DDDD DDDD D DD
Sbjct: 127 DKDDDVRDDDDFDDDDLGDLASDDRA 152
Score = 35.0 bits (81), Expect = 0.015
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
+DD++++D + DD DD+ + DDDD
Sbjct: 286 EEDDEEEEDSKESADDLDDEFEPDDDDNF 314
Score = 34.6 bits (80), Expect = 0.017
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDD 41
M ++ +D++++D + DD DD+ + DDDD+
Sbjct: 282 MRGEEEDDEEEEDSKESADDLDDEFEPDDDDN 313
Score = 34.6 bits (80), Expect = 0.020
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
+ DD++++D + DD DD+ + DDDD+
Sbjct: 285 EEEDDEEEEDSKESADDLDDEFEPDDDDN 313
Score = 34.2 bits (79), Expect = 0.024
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDD 40
+ + DDD DDDD DDDD D DD
Sbjct: 125 EIDKDDDVRDDDDFDDDDLGDLASDDRA 152
Score = 33.8 bits (78), Expect = 0.029
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 1 MMMVDGEWWMADDDNNDDDDDDDDDDDDDDD---DDDDDDDDDDDE 43
+ +D + + DDD+ DDDD D DD +DD++D++++
Sbjct: 123 LSEIDKDDDVRDDDDFDDDDLGDLASDDRAAHFGGGEDDEEDEEEQ 168
Score = 33.0 bits (76), Expect = 0.050
Identities = 9/27 (33%), Positives = 20/27 (74%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+++DD++++D + DD DD+ + DD+
Sbjct: 285 EEEDDEEEEDSKESADDLDDEFEPDDD 311
Score = 31.9 bits (73), Expect = 0.16
Identities = 8/28 (28%), Positives = 19/28 (67%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+++DD++++D + DD DD+ + D+
Sbjct: 283 RGEEEDDEEEEDSKESADDLDDEFEPDD 310
Score = 30.4 bits (69), Expect = 0.43
Identities = 9/34 (26%), Positives = 23/34 (67%)
Query: 4 VDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDD 37
+ E + D +D++D+D DD+DD+++++++
Sbjct: 343 EEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEK 376
Score = 29.6 bits (67), Expect = 0.73
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 21 DDDDDDDDDDDDDDDDDDDDDDEV 44
+++DD++++D + DD DD+ E
Sbjct: 285 EEEDDEEEEDSKESADDLDDEFEP 308
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit
Rpc31. RNA polymerase III contains seventeen subunits
in yeasts and in human cells. Twelve of these are akin
to RNA polymerase I or II and the other five are RNA pol
III-specific, and form the functionally distinct groups
(i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31,
Rpc34 and Rpc82 form a cluster of enzyme-specific
subunits that contribute to transcription initiation in
S.cerevisiae and H.sapiens. There is evidence that these
subunits are anchored at or near the N-terminal Zn-fold
of Rpc1, itself prolonged by a highly conserved but RNA
polymerase III-specific domain.
Length = 221
Score = 42.8 bits (101), Expect = 2e-05
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 10/53 (18%)
Query: 3 MVDGEWWMADDDNNDDDDDDDDDDDDDDDDDD----------DDDDDDDDEVI 45
+ + + +++ ++++D+D DDDDDDDDDD +DDD DDDE +
Sbjct: 168 VDEEDEKDEEEEEEEEEEDEDFDDDDDDDDDDYNAENYFDNGEDDDYDDDEAV 220
Score = 40.1 bits (94), Expect = 2e-04
Identities = 14/31 (45%), Positives = 26/31 (83%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
D D D+ D++++++++++D+D DDDDDDDD
Sbjct: 167 DVDEEDEKDEEEEEEEEEEDEDFDDDDDDDD 197
Score = 39.4 bits (92), Expect = 3e-04
Identities = 13/34 (38%), Positives = 29/34 (85%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
A+D + +D+ D++++++++++D+D DDDDDDD+
Sbjct: 164 EAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDD 197
Score = 39.4 bits (92), Expect = 3e-04
Identities = 10/34 (29%), Positives = 28/34 (82%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
+ ++ D++D+ D++++++++++D+D DDDDD+
Sbjct: 163 LEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDD 196
>gnl|CDD|219922 pfam08595, RXT2_N, RXT2-like, N-terminal. The family represents
the N-terminal region of RXT2-like proteins. In S.
cerevisiae, RXT2 has been demonstrated to be involved
in conjugation with cellular fusion (mating) and
invasive growth. A high throughput localisation study
has localised RXT2 to the nucleus.
Length = 141
Score = 41.6 bits (98), Expect = 2e-05
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D+D D DDDD+DD+DD++ D +DDDE
Sbjct: 47 IDEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 41.6 bits (98), Expect = 2e-05
Identities = 15/28 (53%), Positives = 23/28 (82%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDD 39
D+D D DDDD+DD+DD++ D +DDD++
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDEN 75
Score = 41.2 bits (97), Expect = 4e-05
Identities = 14/28 (50%), Positives = 22/28 (78%)
Query: 15 NNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
+ D D DDDD+DD+DD++ D +DDD++
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDEN 75
Score = 40.8 bits (96), Expect = 5e-05
Identities = 14/28 (50%), Positives = 22/28 (78%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDDDDDDDD 41
D + D DDDD+DD+DD++ D +DDD++
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDEN 75
Score = 40.5 bits (95), Expect = 7e-05
Identities = 14/28 (50%), Positives = 22/28 (78%)
Query: 15 NNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
++D D DDDD+DD+DD++ D +DDD+
Sbjct: 47 IDEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 40.1 bits (94), Expect = 8e-05
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 9 WMADDDNNDDDDDDDDDDDDDDDDDDDDD 37
D + DDDD+DD+DD++ D +DDD++
Sbjct: 47 IDEDGGDIDDDDEDDEDDEEADAEDDDEN 75
Score = 39.7 bits (93), Expect = 1e-04
Identities = 14/28 (50%), Positives = 23/28 (82%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDD 40
D++ D DDDD+DD+DD++ D +DDD++
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDEN 75
Score = 38.9 bits (91), Expect = 3e-04
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 15 NNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
N D+D D DDDD+DD+DD++ D ++
Sbjct: 43 NPPRIDEDGGDIDDDDEDDEDDEEADAEDD 72
Score = 38.5 bits (90), Expect = 3e-04
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 15 NNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
NN D+D D DDDD+DD+DD++ D E
Sbjct: 42 NNPPRIDEDGGDIDDDDEDDEDDEEADAED 71
Score = 35.1 bits (81), Expect = 0.005
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDD 32
D + DDD+ DD+DD++ D +DDD++
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDEN 75
>gnl|CDD|218003 pfam04281, Tom22, Mitochondrial import receptor subunit Tom22.
The mitochondrial protein translocase family, which is
responsible for movement of nuclear encoded
pre-proteins into mitochondria, is very complex with at
least 19 components. These proteins include several
chaperone proteins, four proteins of the outer membrane
translocase (Tom) import receptor, five proteins of the
Tom channel complex, five proteins of the inner
membrane translocase (Tim) and three "motor" proteins.
This family represents the Tom22 proteins. The N
terminal region of Tom22 has been shown to have
chaperone-like activity, and the C terminal region
faces the intermembrane face.
Length = 136
Score = 41.1 bits (97), Expect = 4e-05
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
++ DDDD+DD D D D DD D ++E +
Sbjct: 24 QEESDDDDEDDTDTDSDISDDSDFENETL 52
Score = 38.4 bits (90), Expect = 3e-04
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 15 NNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
N ++ DDDD+DD D D D DD D E
Sbjct: 20 KNLAQEESDDDDEDDTDTDSDISDDSDFE 48
Score = 37.6 bits (88), Expect = 7e-04
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDD 40
+ DDDD+DD D D D DD D ++
Sbjct: 25 EESDDDDEDDTDTDSDISDDSDFEN 49
Score = 36.5 bits (85), Expect = 0.002
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDD 37
A ++++DDD+DD D D D DD D ++
Sbjct: 23 AQEESDDDDEDDTDTDSDISDDSDFEN 49
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 41.9 bits (99), Expect = 4e-05
Identities = 9/39 (23%), Positives = 23/39 (58%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ E W ++D + DD+ + D + D + + D +D++++
Sbjct: 100 EEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDEEEK 138
Score = 39.3 bits (92), Expect = 4e-04
Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
+ EW + + ++D DD+ + D + D + + D +D+E
Sbjct: 101 EEEW---EVEEDEDSDDEGEWIDVESDKEIESSDSEDEEE 137
Score = 37.7 bits (88), Expect = 0.001
Identities = 9/32 (28%), Positives = 22/32 (68%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
+ + DDDDD++++ + ++D+D DD+ + +
Sbjct: 88 AEQGLESDDDDDEEEEWEVEEDEDSDDEGEWI 119
Score = 36.9 bits (86), Expect = 0.002
Identities = 10/37 (27%), Positives = 26/37 (70%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIIT 47
+DDD++++++ + ++D+D DD+ + D + D E+ +
Sbjct: 94 SDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESS 130
Score = 36.9 bits (86), Expect = 0.002
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 13 DDNNDDDDDDDDDDDDDD--DDDDDDDDDDDDEVI 45
+ + DDDDD+++ + ++D+D DD+ E I
Sbjct: 85 KKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWI 119
Score = 36.6 bits (85), Expect = 0.003
Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 12/70 (17%)
Query: 4 VDGEWWMADDDNNDDDDDDDDDDDDDDD------------DDDDDDDDDDDEVIITCKTL 51
+GEW + D + D +D+++ D+ ++D+++ ++E K
Sbjct: 114 DEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEK 173
Query: 52 ISRLTTQRWL 61
S L T R L
Sbjct: 174 ASELATTRIL 183
Score = 36.2 bits (84), Expect = 0.004
Identities = 9/32 (28%), Positives = 21/32 (65%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ + DDDDD++++ + ++D+D DD+ +
Sbjct: 88 AEQGLESDDDDDEEEEWEVEEDEDSDDEGEWI 119
Score = 36.2 bits (84), Expect = 0.004
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 7/40 (17%)
Query: 11 ADDDNN-----DDDDDDDDDDD--DDDDDDDDDDDDDDDE 43
DDD ++D+D DD+ + D + D + + D +DE
Sbjct: 96 DDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDE 135
Score = 35.4 bits (82), Expect = 0.009
Identities = 10/35 (28%), Positives = 24/35 (68%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
DD++D++++ + ++D+D DD+ + D + D+ I
Sbjct: 93 ESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEI 127
Score = 34.6 bits (80), Expect = 0.013
Identities = 10/39 (25%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 9 WMADDDNNDDDDDDDDDDDDDDDDD----DDDDDDDDDE 43
W ++ + + + DDDDD+++ ++D+D DD+
Sbjct: 78 WKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEG 116
Score = 30.4 bits (69), Expect = 0.41
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 7/40 (17%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDD-------DDDDDDDDE 43
+ + + + DDDDD ++D+D DDE
Sbjct: 76 EKWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDE 115
>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2
subunit 1; Provisional.
Length = 319
Score = 40.8 bits (96), Expect = 1e-04
Identities = 10/33 (30%), Positives = 27/33 (81%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
A+++ +DD + +D+D++D+D+++++DDD+ +
Sbjct: 286 AEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGD 318
Score = 39.6 bits (93), Expect = 3e-04
Identities = 12/39 (30%), Positives = 28/39 (71%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D E + + +++DD + +D+D++D+D+++++DDDE
Sbjct: 278 DLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDE 316
Score = 38.9 bits (91), Expect = 5e-04
Identities = 10/32 (31%), Positives = 26/32 (81%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+++ DD + +D+D++D+D+++++DDD+ D+
Sbjct: 288 EEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 33.5 bits (77), Expect = 0.039
Identities = 6/33 (18%), Positives = 23/33 (69%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
++D + + ++++++DD + +D+D++D++
Sbjct: 276 EEDLEELLEKAEEEEEEDDYSESEDEDEEDEDE 308
Score = 33.1 bits (76), Expect = 0.044
Identities = 7/33 (21%), Positives = 24/33 (72%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D+++ ++ + ++++++DD + +D+D++DE
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDE 306
Score = 28.5 bits (64), Expect = 1.8
Identities = 5/34 (14%), Positives = 23/34 (67%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ D+ + ++ + ++++++DD + +D+D+++
Sbjct: 272 VGGDEEDLEELLEKAEEEEEEDDYSESEDEDEED 305
Score = 26.5 bits (59), Expect = 7.2
Identities = 7/28 (25%), Positives = 22/28 (78%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDD 32
+ ++ ++D++ +D+D+++++DDD+ D
Sbjct: 292 EDDYSESEDEDEEDEDEEEEEDDDEGDK 319
>gnl|CDD|222046 pfam13324, GCIP, Grap2 and cyclin-D-interacting. GCIP, or Grap2
and cyclin-D-interacting protein, is found in
eukaryotes, and in the human protein CCNDBP1, residues
149-190 constitute a helix-loop-helix domain, residues
190-240 an acidic region, and 240-261 a leucine zipper
domain. GCIP interacts with full-length Grap2 protein
and with the COOH-terminal unique and SH3 domains
(designated QC domain) of Grap2. It is potentially
involved in the regulation of cell differentiation and
proliferation through Grap2 and cyclin D-mediated
signalling pathways. In mice, it is involved in
G1/S-phase progression of hepatocytes, which in older
animals is associated with the development of liver
tumours. In vitro it acts as an inhibitory HLH protein,
for example, blocking transcription of the HNF-4
promoter. In its function as a cyclin D1-binding protein
it is able to reduce CDK4-mediated phosphorylation of
the retinoblastoma protein and to inhibit E2F-mediated
transcriptional activity. GCIP has also been shown to
have interact physically with Rad (Ras associated with
diabetes), Rad being important in regulating cellular
senescence.
Length = 271
Score = 40.9 bits (96), Expect = 1e-04
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD------EVIITCKTLIS 53
N+D +D D DDDD + DD +DD EV C L+S
Sbjct: 147 EGCSNDDSEDPFSDGHHDDDDVEGDDLNDDRYWSEEEMEVAKPCLGLVS 195
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 40.8 bits (96), Expect = 1e-04
Identities = 12/33 (36%), Positives = 25/33 (75%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
+ +D+D+D D +++D+DDD+DDDD ++ ++
Sbjct: 322 SVSEEDEDEDSDSEEEDEDDDEDDDDGENPWML 354
Score = 37.0 bits (86), Expect = 0.003
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDD 41
D+D+D D +++D+DDD+DDDD ++
Sbjct: 322 SVSEEDEDEDSDSEEEDEDDDEDDDDGENP 351
Score = 35.4 bits (82), Expect = 0.009
Identities = 11/30 (36%), Positives = 23/30 (76%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDD 40
+ + ++D+D D +++D+DDD+DDDD ++
Sbjct: 322 SVSEEDEDEDSDSEEEDEDDDEDDDDGENP 351
Score = 33.5 bits (77), Expect = 0.044
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDDDD 42
++D+D+D D +++D+DDD+DD
Sbjct: 319 EGKSVSEEDEDEDSDSEEEDEDDDEDD 345
Score = 31.6 bits (72), Expect = 0.16
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 21 DDDDDDDDDDDDDDDDDDDDDDEVI 45
DDD+ D++DDDD+D I
Sbjct: 1 MSDDDESDEEDDDDEDKHSKLLSAI 25
Score = 31.6 bits (72), Expect = 0.17
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 17 DDDDDDDDDDDDDDDDDDDD 36
DDD+ D++DDDD+D
Sbjct: 1 MSDDDESDEEDDDDEDKHSK 20
Score = 31.6 bits (72), Expect = 0.17
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 18 DDDDDDDDDDDDDDDDDDDD 37
DDD+ D++DDDD+D
Sbjct: 1 MSDDDESDEEDDDDEDKHSK 20
Score = 31.6 bits (72), Expect = 0.17
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 19 DDDDDDDDDDDDDDDDDDDD 38
DDD+ D++DDDD+D
Sbjct: 1 MSDDDESDEEDDDDEDKHSK 20
Score = 31.6 bits (72), Expect = 0.17
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 20 DDDDDDDDDDDDDDDDDDDD 39
DDD+ D++DDDD+D
Sbjct: 1 MSDDDESDEEDDDDEDKHSK 20
Score = 30.8 bits (70), Expect = 0.32
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 16 NDDDDDDDDDDDDDDDDDDD 35
DDD+ D++DDDD+D
Sbjct: 1 MSDDDESDEEDDDDEDKHSK 20
Score = 30.4 bits (69), Expect = 0.48
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 28 DDDDDDDDDDDDDDDEVIITCKTLISRL 55
DDD+ D++DDDD++ + IS L
Sbjct: 1 MSDDDESDEEDDDDEDKHSKLLSAISSL 28
Score = 29.3 bits (66), Expect = 1.1
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
D DDD D++D D DD++D+DD+E+
Sbjct: 544 IDLDDDLIDEEDSIKLDVDDEEDEDDEEL 572
Score = 28.9 bits (65), Expect = 1.4
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 10 MADDDNNDDDDDDDDDDDDD 29
M+DDD +D++DDDD+D
Sbjct: 1 MSDDDESDEEDDDDEDKHSK 20
Score = 28.1 bits (63), Expect = 2.2
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 11 ADDDNNDDDDDDDDDDDDDD 30
DD+ D++DDDD+D
Sbjct: 1 MSDDDESDEEDDDDEDKHSK 20
Score = 27.3 bits (61), Expect = 5.0
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDD 39
+ D ++D D++D D DD++D+DD++
Sbjct: 543 SIDLDDDLIDEEDSIKLDVDDEEDEDDEE 571
>gnl|CDD|217861 pfam04050, Upf2, Up-frameshift suppressor 2. Transcripts
harbouring premature signals for translation
termination are recognised and rapidly degraded by
eukaryotic cells through a pathway known as
nonsense-mediated mRNA decay. In Saccharomyces
cerevisiae, three trans-acting factors (Upf1 to Upf3)
are required for nonsense-mediated mRNA decay.
Length = 171
Score = 40.1 bits (94), Expect = 1e-04
Identities = 9/36 (25%), Positives = 25/36 (69%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIIT 47
+++ DD+ D+++ D DD+ D++ D +++++ +T
Sbjct: 17 PEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVT 52
Score = 37.7 bits (88), Expect = 0.001
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
DGE + ++DD+ D+++ D DD+ D++ D ++E I
Sbjct: 9 DGEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIF 50
Score = 37.4 bits (87), Expect = 0.001
Identities = 10/32 (31%), Positives = 22/32 (68%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DD +D++ ++D+DD+ D+++ D DD++
Sbjct: 7 SDDGEEDEELPEEDEDDESSDEEEVDLPDDEQ 38
Score = 35.4 bits (82), Expect = 0.005
Identities = 9/31 (29%), Positives = 22/31 (70%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
++ + DD ++D++ ++D+DD+ D++EV
Sbjct: 1 SGSESESDDGEEDEELPEEDEDDESSDEEEV 31
Score = 35.4 bits (82), Expect = 0.005
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DD D++ ++D+DD+ D+++ D DD+ +
Sbjct: 8 DDGEEDEELPEEDEDDESSDEEEVDLPDDEQD 39
Score = 35.0 bits (81), Expect = 0.008
Identities = 10/33 (30%), Positives = 24/33 (72%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
++ D+ ++D++ ++D+DD+ D+++ D DDE
Sbjct: 5 SESDDGEEDEELPEEDEDDESSDEEEVDLPDDE 37
Score = 34.3 bits (79), Expect = 0.012
Identities = 8/36 (22%), Positives = 23/36 (63%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
+ ++D +D+ D+++ D DD+ D++ D +++ +
Sbjct: 16 LPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFV 51
Score = 33.9 bits (78), Expect = 0.019
Identities = 7/33 (21%), Positives = 24/33 (72%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
++ +++D ++D++ ++D+DD+ D+++ D +
Sbjct: 3 SESESDDGEEDEELPEEDEDDESSDEEEVDLPD 35
Score = 32.3 bits (74), Expect = 0.051
Identities = 8/33 (24%), Positives = 21/33 (63%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ +DD ++D++ ++D+DD+ D+++ D
Sbjct: 2 GSESESDDGEEDEELPEEDEDDESSDEEEVDLP 34
Score = 31.6 bits (72), Expect = 0.11
Identities = 7/31 (22%), Positives = 20/31 (64%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ + DD ++D++ ++D+DD+ D+++
Sbjct: 1 SGSESESDDGEEDEELPEEDEDDESSDEEEV 31
Score = 31.6 bits (72), Expect = 0.13
Identities = 7/32 (21%), Positives = 21/32 (65%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
++ DD ++D++ ++D+DD+ D+++ +
Sbjct: 1 SGSESESDDGEEDEELPEEDEDDESSDEEEVD 32
Score = 26.6 bits (59), Expect = 5.6
Identities = 6/33 (18%), Positives = 16/33 (48%)
Query: 2 MMVDGEWWMADDDNNDDDDDDDDDDDDDDDDDD 34
+ + + D + D DD+ D++ D +++
Sbjct: 15 ELPEEDEDDESSDEEEVDLPDDEQDEESDSEEE 47
>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid).
Members of this family are bacterial proteins with a
conserved motif [KR]FYDLN, sometimes flanked by a pair
of CXXC motifs, followed by a long region of low
complexity sequence in which roughly half the residues
are Asp and Glu, including multiple runs of five or
more acidic residues. The function of members of this
family is unknown.
Length = 104
Score = 38.8 bits (91), Expect = 2e-04
Identities = 21/34 (61%), Positives = 24/34 (70%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
++DDDDDDDDD D DDDD D DDDDDD +
Sbjct: 66 VVLDDDDDDDDDDDLPDLDDDDVDLDDDDDDFLE 99
Score = 38.4 bits (90), Expect = 2e-04
Identities = 23/34 (67%), Positives = 24/34 (70%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
DD DDDDDDDDDDD D DDDD D DDDD+
Sbjct: 63 EDDVVLDDDDDDDDDDDLPDLDDDDVDLDDDDDD 96
Score = 38.4 bits (90), Expect = 2e-04
Identities = 22/35 (62%), Positives = 25/35 (71%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
D +DDDDDDDDDD D DDDD D DDDDD+ +
Sbjct: 65 DVVLDDDDDDDDDDDLPDLDDDDVDLDDDDDDFLE 99
Score = 37.7 bits (88), Expect = 3e-04
Identities = 21/33 (63%), Positives = 25/33 (75%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DDD++DDD D DDDD D DDDDDD +DDD+
Sbjct: 71 DDDDDDDDDLPDLDDDDVDLDDDDDDFLEDDDD 103
Score = 36.5 bits (85), Expect = 0.001
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
+D+ ++DD DDDDDDDDDDD D DDDD ++
Sbjct: 57 DEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDL 90
Score = 36.5 bits (85), Expect = 0.001
Identities = 20/33 (60%), Positives = 25/33 (75%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
D++ +D+DD DDDDDDDDDDD D DDD+V
Sbjct: 56 KDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDV 88
Score = 36.5 bits (85), Expect = 0.001
Identities = 21/32 (65%), Positives = 23/32 (71%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
D+D D+DD DDDDDDDDDDD D DDDD
Sbjct: 56 KDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDD 87
Score = 36.1 bits (84), Expect = 0.001
Identities = 22/34 (64%), Positives = 25/34 (73%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ DD++DDDDDDD D DDDD D DDDDDD E
Sbjct: 66 VVLDDDDDDDDDDDLPDLDDDDVDLDDDDDDFLE 99
Score = 35.0 bits (81), Expect = 0.003
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
A D +++D+DD DDDDDDDDDDD D DD+ +
Sbjct: 54 AKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDV 88
Score = 33.8 bits (78), Expect = 0.010
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D D+D++D+DD DDDDDDDDDDD D
Sbjct: 51 EDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDL 83
Score = 33.4 bits (77), Expect = 0.015
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
A+D D+D++D+DD DDDDDDDDDDD +
Sbjct: 50 AEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPD 82
Score = 33.1 bits (76), Expect = 0.015
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
A + D++D+DD DDDDDDDDDDD D D+
Sbjct: 53 AAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDD 85
Score = 32.7 bits (75), Expect = 0.026
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
++D++D+DD DDDDDDDDDDD D +
Sbjct: 52 DAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLD 84
Score = 32.3 bits (74), Expect = 0.028
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
AD ++ D+D++D+DD DDDDDDDDDDD
Sbjct: 48 ADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDD 79
Score = 30.7 bits (70), Expect = 0.12
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
A D + D+D++D+DD DDDDDDDDDD++
Sbjct: 46 PAADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDL 80
Score = 30.4 bits (69), Expect = 0.18
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
D D+D++D+DD DDDDDDDDD+ +
Sbjct: 52 DAAKKDEDEEDEDDVVLDDDDDDDDDDDL 80
Score = 26.1 bits (58), Expect = 5.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 19 DDDDDDDDDDDDDDDDDDDDDDDDEVI 45
D +D D+D++D+DD DDDD+
Sbjct: 49 DAEDAAKKDEDEEDEDDVVLDDDDDDD 75
Score = 25.3 bits (56), Expect = 8.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 20 DDDDDDDDDDDDDDDDDDDDDDDEVIIT 47
D +D D+D++D+DD DDD+
Sbjct: 49 DAEDAAKKDEDEEDEDDVVLDDDDDDDD 76
>gnl|CDD|219293 pfam07093, SGT1, SGT1 protein. This family consists of several
eukaryotic SGT1 proteins. Human SGT1 or hSGT1 is known
to suppress GCR2 and is highly expressed in the muscle
and heart. The function of this family is unknown
although it has been speculated that SGT1 may be
functionally analogous to the Gcr2p protein of
Saccharomyces cerevisiae which is known to be a
regulatory factor of glycolytic gene expression.
Length = 557
Score = 40.5 bits (95), Expect = 2e-04
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 1 MMMVDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
+ + D E D+D DD DD D+DDD+DDD+D+D D E +
Sbjct: 470 LGLKDDEI---DNDLPDDSDDADEDDDEDDDEDEDSSSDSTLEEL 511
Score = 27.8 bits (62), Expect = 3.3
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDD---DDDE 43
+ + + + DD+D+DDD+ DD +D D D+DE
Sbjct: 425 LNKVSSFEGAEFADDEDEDDDEPDDSEDKDVSFDEDE 461
>gnl|CDD|215079 PLN00151, PLN00151, potassium transporter; Provisional.
Length = 852
Score = 40.5 bits (95), Expect = 2e-04
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 6 GEW-WMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTTQRWLDV 63
GE W+ +++ +D DDDDDD D ++++D + + LI DV
Sbjct: 25 GESRWVDGSEDDSEDPASLDDDDDDRDSGGGMLEEEEDGNMR--RRLIRTPPRVDSFDV 81
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 40.4 bits (95), Expect = 2e-04
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 9 WMADDDNNDDDDDDDDDDDDDDDDDDDDDDD 39
D +++DDDD + DD +D+DD+DD+DDD
Sbjct: 1358 KKKSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 40.4 bits (95), Expect = 2e-04
Identities = 15/27 (55%), Positives = 23/27 (85%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDDDDDDD 40
D++ +DDDD + DD +D+DD+DD+DDD
Sbjct: 1362 DSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 40.0 bits (94), Expect = 3e-04
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDDDD 42
+ +DDDD + DD +D+DD+DD+DDD
Sbjct: 1362 DSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 40.0 bits (94), Expect = 3e-04
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D +DDDD + DD +D+DD+DD+DD+
Sbjct: 1362 DSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 39.6 bits (93), Expect = 4e-04
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 15 NNDDDDDDDDDDDDDDDDDDDDDDDDD 41
++ +DDDD + DD +D+DD+DD+DDD
Sbjct: 1362 DSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
>gnl|CDD|117592 pfam09026, Cenp-B_dimeris, Centromere protein B dimerisation
domain. The centromere protein B (CENP-B) dimerisation
domain is composed of two alpha-helices, which are
folded into an antiparallel configuration. Dimerisation
of CENP-B is mediated by this domain, in which monomers
dimerise to form a symmetrical, antiparallel,
four-helix bundle structure with a large hydrophobic
patch in which 23 residues of one monomer form van der
Waals contacts with the other monomer. This CENP-B
dimer configuration may be suitable for capturing two
distant CENP-B boxes during centromeric heterochromatin
formation.
Length = 101
Score = 38.6 bits (89), Expect = 2e-04
Identities = 19/34 (55%), Positives = 31/34 (91%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
++D++ D D+++DDDD+D++DDD+DDD+DDDEV
Sbjct: 8 GEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDEV 41
Score = 33.2 bits (75), Expect = 0.017
Identities = 16/30 (53%), Positives = 25/30 (83%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ +D D D D+++DDDD+D++DDD+DDDE
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDE 36
Score = 31.7 bits (71), Expect = 0.050
Identities = 17/38 (44%), Positives = 29/38 (76%)
Query: 1 MMMVDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDD 38
+ ++GE D + ++DDDD+D++DDD+DDD+DDD+
Sbjct: 3 LHFLEGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
>gnl|CDD|214472 smart00017, OSTEO, Osteopontin. Osteopontin is an acidic
phosphorylated glycoprotein of about 40 Kd which is
abundant in the mineral matrix of bones and which binds
tightly to hydroxyapatite. It is suggested that
osteopontin might function as a cell attachment factor
and could play a key role in the adhesion of
osteoclasts to the mineral matrix of bone.
Length = 287
Score = 39.6 bits (92), Expect = 3e-04
Identities = 19/30 (63%), Positives = 22/30 (73%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D+ DDDDDDD DD D+D DD +D DD DE
Sbjct: 70 DDLDDDDDDDHVDDRDNDSDDAEDSDDSDE 99
Score = 38.8 bits (90), Expect = 5e-04
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D D++DDDD DD D+D DD +D DD D+ DE
Sbjct: 69 TDDLDDDDDDDHVDDRDNDSDDAEDSDDSDESDE 102
Score = 36.9 bits (85), Expect = 0.003
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
++ DD DDDDDDD DD D+D DD +D D+
Sbjct: 67 EHTDDLDDDDDDDHVDDRDNDSDDAEDSDD 96
Score = 36.5 bits (84), Expect = 0.003
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
+ +D DDDDDDD DD D+D DD +D DD
Sbjct: 67 EHTDDLDDDDDDDHVDDRDNDSDDAEDSDD 96
Score = 35.0 bits (80), Expect = 0.009
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ ++ DDDDDDD DD D+D DD +D DD +
Sbjct: 67 EHTDDLDDDDDDDHVDDRDNDSDDAEDSDDSD 98
Score = 34.6 bits (79), Expect = 0.016
Identities = 16/26 (61%), Positives = 18/26 (69%)
Query: 19 DDDDDDDDDDDDDDDDDDDDDDDDEV 44
DD DDDDDDD DD D+D DD +D
Sbjct: 70 DDLDDDDDDDHVDDRDNDSDDAEDSD 95
Score = 33.8 bits (77), Expect = 0.029
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+N+ + DD DDDDDDD DD D+D D+
Sbjct: 60 SKSNESHEHTDDLDDDDDDDHVDDRDNDSDD 90
Score = 33.4 bits (76), Expect = 0.041
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
N + DD DDDDDDD DD D+D DD
Sbjct: 60 SKSNESHEHTDDLDDDDDDDHVDDRDNDSDD 90
Score = 31.5 bits (71), Expect = 0.15
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DDD+ DD D+D DD +D DD D+ D+ DE
Sbjct: 77 DDDHVDDRDNDSDDAEDSDDSDESDESHHSDE 108
Score = 29.6 bits (66), Expect = 0.70
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
D+ D+D DD +D DD D+ D+ D+ D
Sbjct: 80 HVDDRDNDSDDAEDSDDSDESDESHHSDESDVT 112
Score = 27.6 bits (61), Expect = 2.9
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLT 56
DD ++D DD +D DD D+ D+ D+ D T T
Sbjct: 81 VDDRDNDSDDAEDSDDSDESDESHHSDESDVTDFPTDAPATDVFT 125
Score = 27.6 bits (61), Expect = 3.4
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 3 MVDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
D + DD +D D+D DD +D DD D+ D+ D+
Sbjct: 69 TDDLDDDDDDDHVDDRDNDSDDAEDSDDSDESDESHHSDE 108
Score = 27.3 bits (60), Expect = 4.5
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
D ++ D+D DD +D DD D+ D+ D+ +V
Sbjct: 79 DHVDDRDNDSDDAEDSDDSDESDESHHSDESDV 111
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 39.4 bits (93), Expect = 4e-04
Identities = 9/40 (22%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 4 VDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+DG D + +D + ++ DDD+D+++++D+++
Sbjct: 170 IDGF---VDPNAEEDPAHVGSELEELDDDEDEEEEEDEND 206
Score = 39.0 bits (92), Expect = 5e-04
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
D N ++D + ++ DDD+D+++++DE
Sbjct: 173 FVDPNAEEDPAHVGSELEELDDDEDEEEEEDEN 205
Score = 36.3 bits (85), Expect = 0.004
Identities = 7/32 (21%), Positives = 21/32 (65%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ + + + ++ DDD+D+++++D++DD
Sbjct: 177 NAEEDPAHVGSELEELDDDEDEEEEEDENDDS 208
Score = 35.5 bits (83), Expect = 0.009
Identities = 9/33 (27%), Positives = 22/33 (66%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
A++D + ++ DDD+D+++++D++DD
Sbjct: 178 AEEDPAHVGSELEELDDDEDEEEEEDENDDSLA 210
Score = 34.0 bits (79), Expect = 0.030
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ ++ DDD+D+++++D++DD DE
Sbjct: 181 DPAHVGSELEELDDDEDEEEEEDENDDSLAADE 213
Score = 33.6 bits (78), Expect = 0.041
Identities = 11/41 (26%), Positives = 27/41 (65%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTL 51
++ + DDD+D+++++D++DD D+ + ++V+ K L
Sbjct: 187 SELEELDDDEDEEEEEDENDDSLAADESELPEKVLEKFKAL 227
Score = 33.2 bits (77), Expect = 0.046
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
A + ++ DDD+D+++++D++DD D+ E
Sbjct: 182 PAHVGSELEELDDDEDEEEEEDENDDSLAADESE 215
Score = 31.7 bits (73), Expect = 0.16
Identities = 8/43 (18%), Positives = 20/43 (46%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLT 56
+ D DD +++ D D+D +++ + + ++ I R
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESEIGRTD 103
Score = 31.7 bits (73), Expect = 0.17
Identities = 8/32 (25%), Positives = 20/32 (62%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
D + + ++ DDD+D+++++D++DD
Sbjct: 180 EDPAHVGSELEELDDDEDEEEEEDENDDSLAA 211
Score = 31.3 bits (72), Expect = 0.22
Identities = 9/36 (25%), Positives = 22/36 (61%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
+ DDD+D+++++D++DD D+ + E ++
Sbjct: 186 GSELEELDDDEDEEEEEDENDDSLAADESELPEKVL 221
Score = 30.1 bits (69), Expect = 0.54
Identities = 8/32 (25%), Positives = 20/32 (62%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
+ + DDD+D+++++D++DD D+ +
Sbjct: 185 VGSELEELDDDEDEEEEEDENDDSLAADESEL 216
>gnl|CDD|223529 COG0452, Dfp, Phosphopantothenoylcysteine synthetase/decarboxylase
[Coenzyme metabolism].
Length = 392
Score = 39.3 bits (92), Expect = 4e-04
Identities = 7/38 (18%), Positives = 14/38 (36%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIIT 47
DDN D D +D + + ++ + + I
Sbjct: 352 FGSDDNEVRIIDKDGEDVELPEMSKEELAERILDEIAE 389
Score = 37.3 bits (87), Expect = 0.002
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
+ DD++ D D +D + + +E+
Sbjct: 348 SEIGFGSDDNEVRIIDKDGEDVELPEMSKEEL 379
Score = 33.9 bits (78), Expect = 0.026
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D DD++ D D +D + + E
Sbjct: 346 DVSEIGFGSDDNEVRIIDKDGEDVELPEMSKE 377
Score = 32.7 bits (75), Expect = 0.073
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 7 EWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
+ +A+D + DD++ D D +D + +
Sbjct: 340 DLIVANDVSEIGFGSDDNEVRIIDKDGEDVELPEMS 375
Score = 31.6 bits (72), Expect = 0.16
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
ND + DD++ D D +D +
Sbjct: 345 NDVSEIGFGSDDNEVRIIDKDGEDVELP 372
Score = 31.2 bits (71), Expect = 0.22
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 15 NNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
N+ + DD++ D D +D + E
Sbjct: 345 NDVSEIGFGSDDNEVRIIDKDGEDVELPE 373
Score = 30.8 bits (70), Expect = 0.27
Identities = 5/35 (14%), Positives = 14/35 (40%)
Query: 7 EWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDD 41
E + D D D + + ++ + D+ + +
Sbjct: 358 EVRIIDKDGEDVELPEMSKEELAERILDEIAELLE 392
Score = 30.8 bits (70), Expect = 0.28
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 12 DDDNNDDDDDDDDD----DDDDDDDDDDDDDDDDDEVIITCKTLISR 54
+ N D +D DD++ D D +D E+ K ++
Sbjct: 335 ERKNLDLIVANDVSEIGFGSDDNEVRIIDKDGEDVELPEMSKEELAE 381
>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional.
Length = 357
Score = 38.7 bits (90), Expect = 6e-04
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDD 41
AD+D D D D + DDD + DDDDDD
Sbjct: 19 AADEDLYSDISDGDLEYSDDDSASESDDDDDD 50
Score = 34.5 bits (79), Expect = 0.016
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 10 MADDDNNDDD---DDDDDDDDDDDDDDDDDDDDDDDEVIITCK 49
D+D D D D + DDD + DDDDD+ +I K
Sbjct: 14 SYSGGAADEDLYSDISDGDLEYSDDDSASESDDDDDDGLIPTK 56
Score = 26.4 bits (58), Expect = 9.5
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 5 DGEWWMADDDNNDDDDDDDDD 25
DG+ +DDD+ + DDDDDD
Sbjct: 30 DGDLEYSDDDSASESDDDDDD 50
>gnl|CDD|235548 PRK05657, PRK05657, RNA polymerase sigma factor RpoS; Validated.
Length = 325
Score = 37.2 bits (87), Expect = 0.002
Identities = 12/54 (22%), Positives = 28/54 (51%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTTQRWLDV 63
M ++ ++D D D++ + D+ +++ + + + L+S+ TQR LD
Sbjct: 1 MTLKVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDA 54
>gnl|CDD|223052 PHA03346, PHA03346, US22 family homolog; Provisional.
Length = 520
Score = 37.1 bits (86), Expect = 0.003
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTT-QRW 60
++DD+ DD+DDDD +D D D+DD D + L R+ T +RW
Sbjct: 426 PDDDDEGDDEDDDDWEDLGFDLDEDDVYDLKDVDEWRLERRIATAERW 473
Score = 35.9 bits (83), Expect = 0.005
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DDD+ DD+DDDD +D D D+DD D D
Sbjct: 427 DDDDEGDDEDDDDWEDLGFDLDEDDVYDLKDV 458
Score = 35.9 bits (83), Expect = 0.006
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDD 40
DD+++ DD+DDDD +D D D+DD D
Sbjct: 426 PDDDDEGDDEDDDDWEDLGFDLDEDDVYD 454
Score = 27.4 bits (61), Expect = 4.4
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 6/32 (18%)
Query: 12 DDDNNDDDDDDD------DDDDDDDDDDDDDD 37
DDD DD+DDDD D D+DD D D D
Sbjct: 428 DDDEGDDEDDDDWEDLGFDLDEDDVYDLKDVD 459
Score = 26.7 bits (59), Expect = 7.2
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDD 40
+ D+ DDDD +D D D+DD D D D
Sbjct: 431 EGDDEDDDDWEDLGFDLDEDDVYDLKDVD 459
>gnl|CDD|217830 pfam03986, Autophagy_N, Autophagocytosis associated protein (Atg3),
N-terminal domain. Autophagocytosis is a
starvation-induced process responsible for transport of
cytoplasmic proteins to the lysosome/vacuole. Atg3 is a
ubiquitin like modifier that is topologically similar to
the canonical E2 enzyme. It catalyzes the conjugation of
Atg8 and phosphatidylethanolamine.
Length = 146
Score = 35.8 bits (83), Expect = 0.003
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DD D++D + DDDDD D D D+DDD+
Sbjct: 111 QKDDIADEEDIPEIGDDDDDVVDSSDADEDDDD 143
Score = 32.7 bits (75), Expect = 0.037
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ + W+ N D DD D++D + DDDDD D
Sbjct: 97 EDDGWVTTHGNRDKQKDDIADEEDIPEIGDDDDDVVDSS 135
Score = 32.7 bits (75), Expect = 0.040
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDD 40
++D + DDDDD D D D+DDDDD
Sbjct: 118 EEDIPEIGDDDDDVVDSSDADEDDDDDIP 146
Score = 29.2 bits (66), Expect = 0.62
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
A++ D+D+DD + D DD D++++
Sbjct: 88 AEEIVEDEDEDDGWVTTHGNRDKQKDDIADEEDI 121
Score = 27.7 bits (62), Expect = 1.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 9 WMADDDNNDDDDDDDDDDDDDDDD 32
+ DDD++ D D D+DDDDD
Sbjct: 123 EIGDDDDDVVDSSDADEDDDDDIP 146
Score = 26.9 bits (60), Expect = 3.3
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
++ +D+D+DD + D DD D+E I
Sbjct: 88 AEEIVEDEDEDDGWVTTHGNRDKQKDDIADEEDI 121
Score = 26.9 bits (60), Expect = 3.7
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
+D++ DD + D DD D++D +
Sbjct: 93 EDEDEDDGWVTTHGNRDKQKDDIADEEDIPE 123
Score = 26.5 bits (59), Expect = 5.4
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
+D ++DD + D DD D++D E+
Sbjct: 93 EDEDEDDGWVTTHGNRDKQKDDIADEEDIPEIG 125
Score = 26.5 bits (59), Expect = 5.7
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 3 MVDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDD 41
M G+ ++ D+DD + D DD D++D
Sbjct: 82 MEYGDGAEEIVEDEDEDDGWVTTHGNRDKQKDDIADEED 120
>gnl|CDD|240521 cd13394, Syo1_like, Fungal symportin 1 (syo1) and similar proteins.
This family of eukaryotic proteins includes
Saccharomyces cerevisiae Ydl063c and Chaetomium
thermophilum Syo1, which mediate the co-import of two
ribosomal proteins, Rpl5 and Rpl11 (which both interact
with 5S rRNA) into the nucleus. Import precedes their
association with rRNA and subsequent ribosome assembly
in the nucleolus. The primary structure of syo1 is a
mixture of Armadillo- (ARM, N-terminal part of syo1) and
HEAT-repeats (C-terminal part of syo1).
Length = 597
Score = 36.9 bits (86), Expect = 0.003
Identities = 11/45 (24%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLT 56
DD+ +D+ D+D+++D+DD+ + + + I+ L++ L
Sbjct: 309 DDEAMEDEQSDEDEEEDEDDEASETLVPELSPLEISLD-LLTALL 352
Score = 36.9 bits (86), Expect = 0.003
Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDD--DEVIITCKTL 51
+ D DD+ +D+ D+D+++D+DD+ + E+ +L
Sbjct: 303 KELDKKDDEAMEDEQSDEDEEEDEDDEASETLVPELSPLEISL 345
Score = 34.2 bits (79), Expect = 0.022
Identities = 9/36 (25%), Positives = 22/36 (61%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
+ + + DD+ +D+ D+D+++D+DD+ + V
Sbjct: 301 ICKELDKKDDEAMEDEQSDEDEEEDEDDEASETLVP 336
Score = 31.1 bits (71), Expect = 0.22
Identities = 10/50 (20%), Positives = 25/50 (50%)
Query: 20 DDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTTQRWLDVGPSWTE 69
+ D DD+ +D+ D+D+++D++ + + + LD+ + E
Sbjct: 304 ELDKKDDEAMEDEQSDEDEEEDEDDEASETLVPELSPLEISLDLLTALLE 353
Score = 27.3 bits (61), Expect = 4.6
Identities = 8/45 (17%), Positives = 24/45 (53%)
Query: 9 WMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLIS 53
M D+ +++D+++D+DD+ + + + +++ LI+
Sbjct: 312 AMEDEQSDEDEEEDEDDEASETLVPELSPLEISLDLLTALLELIA 356
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase
chain; Provisional.
Length = 1033
Score = 37.1 bits (86), Expect = 0.003
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 10/60 (16%)
Query: 10 MADDDNNDDDDDD----------DDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTTQR 59
+ N ++D+++ D DDD+ +D+D+D++DD+E K IS+ R
Sbjct: 5 VNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEISKREKAR 64
>gnl|CDD|225950 COG3416, COG3416, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 233
Score = 36.4 bits (84), Expect = 0.003
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDDDDDDD 40
D N DD D D D DD D D+DD
Sbjct: 205 DINFDDGSFADIDTDLDDTDSIDNDDF 231
Score = 34.5 bits (79), Expect = 0.013
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
D DN D + DD D D D DD D D+D
Sbjct: 198 DDSDNPADINFDDGSFADIDTDLDDTDSIDND 229
Score = 33.7 bits (77), Expect = 0.027
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDD 39
D N DD D D D DD D D+DD
Sbjct: 205 DINFDDGSFADIDTDLDDTDSIDNDDF 231
Score = 31.4 bits (71), Expect = 0.14
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DD +N D + DD D D D DD D D++
Sbjct: 198 DDSDNPADINFDDGSFADIDTDLDDTDSIDND 229
Score = 30.2 bits (68), Expect = 0.33
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDD 35
DD + D D D DD D D+DD
Sbjct: 208 FDDGSFADIDTDLDDTDSIDNDDF 231
Score = 29.5 bits (66), Expect = 0.81
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
DD+++ D + DD D D D DD D D
Sbjct: 197 YDDSDNPADINFDDGSFADIDTDLDDTDSID 227
Score = 28.7 bits (64), Expect = 1.2
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDD 33
D D D D DD D D+DD
Sbjct: 209 DDGSFADIDTDLDDTDSIDNDDF 231
Score = 27.5 bits (61), Expect = 3.0
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 13/44 (29%)
Query: 14 DNNDDDDDDDDDD-------------DDDDDDDDDDDDDDDDEV 44
+N ++ DD D D D D DD D D+DD +
Sbjct: 189 ENTVINNYYDDSDNPADINFDDGSFADIDTDLDDTDSIDNDDFI 232
>gnl|CDD|221173 pfam11702, DUF3295, Protein of unknown function (DUF3295). This
family is conserved in fungi but the function is not
known.
Length = 509
Score = 36.5 bits (84), Expect = 0.004
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+DDD + + ++DD D+ +DDDDD D +D
Sbjct: 283 TSDDDEDAIETEEDDVDESAIEDDDDDSDWEDSV 316
Score = 36.5 bits (84), Expect = 0.004
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
DD+ D + ++DD D+ +DDDDD D +D V
Sbjct: 283 TSDDDEDAIETEEDDVDESAIEDDDDDSDWEDSV 316
Score = 36.5 bits (84), Expect = 0.004
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D+D + ++DD D+ +DDDDD D +D +E
Sbjct: 287 DEDAIETEEDDVDESAIEDDDDDSDWEDSVEE 318
Score = 35.3 bits (81), Expect = 0.009
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIIT 47
++D+D + ++DD D+ +DDDDD D E +
Sbjct: 284 SDDDEDAIETEEDDVDESAIEDDDDDSDWEDSVE 317
Score = 34.9 bits (80), Expect = 0.013
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DD++ + ++DD D+ +DDDDD D +D E
Sbjct: 284 SDDDEDAIETEEDDVDESAIEDDDDDSDWEDSVE 317
Score = 33.0 bits (75), Expect = 0.055
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ DDD+D + ++DD D+ +DDDDD
Sbjct: 281 ERTSDDDEDAIETEEDDVDESAIEDDDDDS 310
Score = 30.3 bits (68), Expect = 0.47
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 2 MMVDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDD 37
D E + ++++ D+ +DDDDD D +D ++
Sbjct: 283 TSDDDEDAIETEEDDVDESAIEDDDDDSDWEDSVEE 318
Score = 29.5 bits (66), Expect = 0.88
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 3 MVDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDD 38
D + + + +D D+ +DDDDD D +D ++
Sbjct: 283 TSDDDEDAIETEEDDVDESAIEDDDDDSDWEDSVEE 318
Score = 27.6 bits (61), Expect = 4.1
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D D + +DDDDD D +D ++ D+
Sbjct: 297 DVDESAIEDDDDDSDWEDSVEESGRSSVDEKT 328
>gnl|CDD|218421 pfam05086, Dicty_REP, Dictyostelium (Slime Mold) REP protein. This
family consists of REP proteins from Dictyostelium
(Slime molds). REP protein is likely involved in
transcription regulation and control of DNA replication,
specifically amplification of plasmid at low copy
numbers. The formation of homomultimers may be required
for their regulatory activity.
Length = 910
Score = 36.7 bits (85), Expect = 0.004
Identities = 13/22 (59%), Positives = 20/22 (90%)
Query: 22 DDDDDDDDDDDDDDDDDDDDDE 43
DDD D+D+D D+D+D+D+D+DE
Sbjct: 889 DDDADEDEDQDEDEDEDEDEDE 910
Score = 35.6 bits (82), Expect = 0.008
Identities = 13/24 (54%), Positives = 22/24 (91%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDDD 39
N+DDD D+D+D D+D+D+D+D+D+
Sbjct: 887 NEDDDADEDEDQDEDEDEDEDEDE 910
Score = 35.6 bits (82), Expect = 0.009
Identities = 13/24 (54%), Positives = 21/24 (87%)
Query: 15 NNDDDDDDDDDDDDDDDDDDDDDD 38
N DDD D+D+D D+D+D+D+D+D+
Sbjct: 887 NEDDDADEDEDQDEDEDEDEDEDE 910
Score = 34.4 bits (79), Expect = 0.019
Identities = 12/22 (54%), Positives = 20/22 (90%)
Query: 19 DDDDDDDDDDDDDDDDDDDDDD 40
DDD D+D+D D+D+D+D+D+D+
Sbjct: 889 DDDADEDEDQDEDEDEDEDEDE 910
Score = 34.4 bits (79), Expect = 0.019
Identities = 12/22 (54%), Positives = 20/22 (90%)
Query: 20 DDDDDDDDDDDDDDDDDDDDDD 41
DDD D+D+D D+D+D+D+D+D+
Sbjct: 889 DDDADEDEDQDEDEDEDEDEDE 910
Score = 34.4 bits (79), Expect = 0.019
Identities = 12/22 (54%), Positives = 20/22 (90%)
Query: 21 DDDDDDDDDDDDDDDDDDDDDD 42
DDD D+D+D D+D+D+D+D+D+
Sbjct: 889 DDDADEDEDQDEDEDEDEDEDE 910
Score = 32.5 bits (74), Expect = 0.086
Identities = 11/22 (50%), Positives = 20/22 (90%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDD 33
DDD ++D+D D+D+D+D+D+D+
Sbjct: 889 DDDADEDEDQDEDEDEDEDEDE 910
Score = 32.5 bits (74), Expect = 0.096
Identities = 10/27 (37%), Positives = 23/27 (85%)
Query: 9 WMADDDNNDDDDDDDDDDDDDDDDDDD 35
+ ++D++ D+D+D D+D+D+D+D+D+
Sbjct: 884 FQENEDDDADEDEDQDEDEDEDEDEDE 910
>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT
(nicotinate-mononucleotide:5, 6-dimethylbenzimidazole
phosphoribosyltransferase) [Coenzyme metabolism].
Length = 620
Score = 36.4 bits (84), Expect = 0.004
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DD +D D++D DDD D+++D + ++ E
Sbjct: 222 TGDDGIEEDADEEDGDDDQPDNNEDSEAGREESE 255
Score = 30.6 bits (69), Expect = 0.43
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDD 40
MA++ +D ++D D++D DDD D+++D +
Sbjct: 218 MAEETGDDGIEEDADEEDGDDDQPDNNEDSE 248
Score = 27.9 bits (62), Expect = 3.0
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ D ++ DD ++D D++D DDD D++++
Sbjct: 213 LGSMDMAEETGDDGIEEDADEEDGDDDQPDNNED 246
Score = 27.5 bits (61), Expect = 4.2
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
M + ++ DD ++D D++D DDD D++E
Sbjct: 212 MLGSMDMAEETGDDGIEEDADEEDGDDDQPDNNE 245
Score = 27.5 bits (61), Expect = 4.3
Identities = 8/34 (23%), Positives = 22/34 (64%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
AD+++ DDD D+++D + ++ + D+ +++
Sbjct: 231 ADEEDGDDDQPDNNEDSEAGREESEGSDESEEDE 264
Score = 27.1 bits (60), Expect = 5.0
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D D D DDD D+++D + ++ + D+ E
Sbjct: 230 DADEEDGDDDQPDNNEDSEAGREESEGSDESE 261
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho;
Provisional.
Length = 672
Score = 36.4 bits (85), Expect = 0.004
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D D DD+ +D D D DD +
Sbjct: 226 RRGRRRRRDRRDARGDDNREDRGDRDGDDGEG 257
Score = 35.3 bits (82), Expect = 0.010
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D D DD+ +D D D DD +
Sbjct: 227 RGRRRRRDRRDARGDDNREDRGDRDGDDGEGR 258
Score = 35.3 bits (82), Expect = 0.010
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
D D DD+ +D D D DD +
Sbjct: 227 RGRRRRRDRRDARGDDNREDRGDRDGDDGEGR 258
Score = 34.9 bits (81), Expect = 0.012
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D D D DD+ +D D D DD E
Sbjct: 224 GDRRGRRRRRDRRDARGDDNREDRGDRDGDDGE 256
Score = 34.9 bits (81), Expect = 0.013
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D D DD+ +D D D DD +
Sbjct: 229 RRRRRDRRDARGDDNREDRGDRDGDDGEGRGG 260
Score = 34.1 bits (79), Expect = 0.027
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ D DD+ +D D D DD +
Sbjct: 229 RRRRRDRRDARGDDNREDRGDRDGDDGEGRGGR 261
Score = 33.3 bits (77), Expect = 0.048
Identities = 7/31 (22%), Positives = 10/31 (32%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
+ D D D D DD+ +D
Sbjct: 217 ERGRRDGGDRRGRRRRRDRRDARGDDNREDR 247
Score = 33.0 bits (76), Expect = 0.056
Identities = 7/32 (21%), Positives = 8/32 (25%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
D + D D D D DD
Sbjct: 211 QGDRREERGRRDGGDRRGRRRRRDRRDARGDD 242
Score = 33.0 bits (76), Expect = 0.067
Identities = 6/32 (18%), Positives = 9/32 (28%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D ++ D D D D D+
Sbjct: 211 QGDRREERGRRDGGDRRGRRRRRDRRDARGDD 242
Score = 32.6 bits (75), Expect = 0.079
Identities = 9/32 (28%), Positives = 12/32 (37%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D D D DD+ +D D D D+
Sbjct: 223 GGDRRGRRRRRDRRDARGDDNREDRGDRDGDD 254
Score = 31.4 bits (72), Expect = 0.21
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
D + D D DD+ +D D D
Sbjct: 222 DGGDRRGRRRRRDRRDARGDDNREDRGDRD 251
Score = 31.0 bits (71), Expect = 0.24
Identities = 7/31 (22%), Positives = 8/31 (25%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
D D D D D DD+
Sbjct: 213 DRREERGRRDGGDRRGRRRRRDRRDARGDDN 243
Score = 31.0 bits (71), Expect = 0.24
Identities = 8/31 (25%), Positives = 10/31 (32%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
D D D D DD+ +D D
Sbjct: 220 RRDGGDRRGRRRRRDRRDARGDDNREDRGDR 250
Score = 28.3 bits (64), Expect = 1.9
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DDN +D D D DD + D D
Sbjct: 239 RGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDR 271
Score = 28.3 bits (64), Expect = 2.3
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDD 41
A D+N +D D D DD + D
Sbjct: 238 ARGDDNREDRGDRDGDDGEGRGGRRGRRFRD 268
Score = 27.6 bits (62), Expect = 3.8
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
+++ +D D D DD + D
Sbjct: 238 ARGDDNREDRGDRDGDDGEGRGGRRGRRFRD 268
Score = 26.4 bits (59), Expect = 8.0
Identities = 7/44 (15%), Positives = 13/44 (29%), Gaps = 8/44 (18%)
Query: 12 DDDNNDDDDDDDDDDDD--------DDDDDDDDDDDDDDEVIIT 47
+D + D DD + D D ++ E +
Sbjct: 245 EDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGDGGNEREPELR 288
>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi. This family includes
the fifth essential DNA polymerase in yeast EC:2.7.7.7.
Pol5p is localised exclusively to the nucleolus and
binds near or at the enhancer region of rRNA-encoding
DNA repeating units.
Length = 784
Score = 36.0 bits (83), Expect = 0.005
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Query: 3 MVDGEWWMADDDNNDDDD--------DDDDDDDDDDDDDDDDDDDDDDE 43
+ +GE DD DDD D + + + D +D ++D+ +DD E
Sbjct: 644 LFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAE 692
Score = 35.2 bits (81), Expect = 0.010
Identities = 10/39 (25%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Query: 12 DDDNND-----DDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
DDD ++ D + + + D +D ++D+ +DD + +E +
Sbjct: 659 DDDEDECEAIEDSESESESDGEDGEEDEQEDDAEANEGV 697
Score = 34.5 bits (79), Expect = 0.019
Identities = 7/34 (20%), Positives = 19/34 (55%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
++ ++ D +D ++D+ +DD + ++ D V
Sbjct: 671 SESESESDGEDGEEDEQEDDAEANEGVVPIDKAV 704
Score = 31.4 bits (71), Expect = 0.19
Identities = 6/32 (18%), Positives = 19/32 (59%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
+D+ + + D +D ++D+ +DD + ++ +
Sbjct: 669 EDSESESESDGEDGEEDEQEDDAEANEGVVPI 700
Score = 31.4 bits (71), Expect = 0.24
Identities = 7/30 (23%), Positives = 18/30 (60%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
+ + + D +D ++D+ +DD + ++ V I
Sbjct: 671 SESESESDGEDGEEDEQEDDAEANEGVVPI 700
Score = 31.0 bits (70), Expect = 0.32
Identities = 6/32 (18%), Positives = 20/32 (62%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
++++ + + D +D ++D+ +DD + ++ I
Sbjct: 669 EDSESESESDGEDGEEDEQEDDAEANEGVVPI 700
Score = 26.4 bits (58), Expect = 8.3
Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 25/57 (43%)
Query: 12 DDDNNDDDDDDDDDDDDDD-------------------------DDDDDDDDDDDDE 43
+ D D ++D+ +DD + + D +D++ DDE
Sbjct: 676 ESDGEDGEEDEQEDDAEANEGVVPIDKAVRRALPKVLNLPDALDGGDSEDEEGMDDE 732
>gnl|CDD|219572 pfam07780, Spb1_C, Spb1 C-terminal domain. This presumed domain
is found at the C-terminus of a family of FtsJ-like
methyltransferases. Members of this family are involved
in 60S ribosomal biogenesis.
Length = 212
Score = 35.7 bits (83), Expect = 0.005
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 17/80 (21%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTTQR----------- 59
D++++ + ++D+ D D+DDD DD D++ L L ++
Sbjct: 3 KSDEDDEFEVVPAEEDEKKVDKDEDDDKDDIDDLTAEALALAKLLARKKTREDLIDDSFN 62
Query: 60 ---WLDVG--PSW-TEDEHK 73
+ D P W +DE K
Sbjct: 63 RYSFNDDDGLPDWFVDDEKK 82
>gnl|CDD|218598 pfam05470, eIF-3c_N, Eukaryotic translation initiation factor 3
subunit 8 N-terminus. The largest of the mammalian
translation initiation factors, eIF3, consists of at
least eight subunits ranging in mass from 35 to 170 kDa.
eIF3 binds to the 40 S ribosome in an early step of
translation initiation and promotes the binding of
methionyl-tRNAi and mRNA.
Length = 593
Score = 35.9 bits (83), Expect = 0.006
Identities = 17/58 (29%), Positives = 31/58 (53%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTTQRWLDVGPSWTEDEHK 73
D + +D+++++D+DDDDD DD+D+DE + ++ + V EDE
Sbjct: 133 EDPESEDEEEEEDEDDDDDGSDDEDEDEDGVGATEEVAASSESGVDRVKEDDEEDEDA 190
Score = 33.6 bits (77), Expect = 0.037
Identities = 11/33 (33%), Positives = 24/33 (72%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
+ + + +D+++++D+DDDDD DD+D+D+
Sbjct: 128 ITRYREDPESEDEEEEEDEDDDDDGSDDEDEDE 160
Score = 33.6 bits (77), Expect = 0.042
Identities = 13/29 (44%), Positives = 24/29 (82%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDD 40
D ++ D+++++D+DDDDD DD+D+D+D
Sbjct: 134 DPESEDEEEEEDEDDDDDGSDDEDEDEDG 162
Score = 30.5 bits (69), Expect = 0.34
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
+D +++D+DDDDD DD+D+D+D +EV
Sbjct: 138 EDEEEEEDEDDDDDGSDDEDEDEDGVGATEEV 169
Score = 29.8 bits (67), Expect = 0.72
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DD +D + +D+++++D+DDDDD DDE
Sbjct: 126 DDITRYREDPESEDEEEEEDEDDDDDGSDDE 156
Score = 28.6 bits (64), Expect = 1.5
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDD 34
+++ D+DDDDD DD+D+D+D
Sbjct: 139 DEEEEEDEDDDDDGSDDEDEDEDG 162
Score = 28.2 bits (63), Expect = 2.3
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 4 VDGEWWMADDDNNDDDDDDDDDDDDDDDDD 33
D E +++ ++DDDDD DD+D+D+D
Sbjct: 133 EDPESEDEEEEEDEDDDDDGSDDEDEDEDG 162
>gnl|CDD|240433 PTZ00482, PTZ00482, membrane-attack complex/perforin (MACPF)
Superfamily; Provisional.
Length = 844
Score = 36.0 bits (83), Expect = 0.006
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 18 DDDDDDDDDDDDDDDDDDDDDDDDDE 43
DDDDDD+ D +DD+DD + E
Sbjct: 87 DDDDDDEFDFLYEDDEDDAGNATSGE 112
Score = 36.0 bits (83), Expect = 0.006
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
DDD D +DD+DD + + DDD
Sbjct: 89 DDDDEFDFLYEDDEDDAGNATSGESSTDDDSL 120
Score = 35.6 bits (82), Expect = 0.009
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
DD+ + +DD+DD + + DDD E+
Sbjct: 89 DDDDEFDFLYEDDEDDAGNATSGESSTDDDSLLEL 123
Score = 35.2 bits (81), Expect = 0.012
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 15 NNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ DDDDDD+ D +DD+DD + +
Sbjct: 85 SLDDDDDDEFDFLYEDDEDDAGNATSGES 113
Score = 32.9 bits (75), Expect = 0.057
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DDDDD+ D +DD+DD + +
Sbjct: 88 DDDDDEFDFLYEDDEDDAGNATSGESS 114
Score = 32.1 bits (73), Expect = 0.11
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDD---DDDDE 43
DD++DD+ D +DD+DD + + DDD
Sbjct: 87 DDDDDDEFDFLYEDDEDDAGNATSGESSTDDDSL 120
Score = 31.4 bits (71), Expect = 0.24
Identities = 10/53 (18%), Positives = 19/53 (35%)
Query: 4 VDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLT 56
E D + D +D D DD D + ++D+ + ++ T
Sbjct: 188 DGEEAAAKDGGKSKSSDPGPLNDSDGQGDDGDPESAEEDKAASNTRAAYTKAT 240
Score = 30.6 bits (69), Expect = 0.39
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D DD+DD + + DDD + D
Sbjct: 95 DFLYEDDEDDAGNATSGESSTDDDSLLELPDR 126
Score = 28.3 bits (63), Expect = 2.3
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
GE DD + D D+D D ++D +D D DD
Sbjct: 110 SGESSTDDDSLLELPDRDEDADTQANNDQTNDFDQDDSS 148
Score = 27.9 bits (62), Expect = 2.8
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
+ +DD +D + + DDD + D D+D
Sbjct: 97 LYEDDEDDAGNATSGESSTDDDSLLELPDRDED 129
>gnl|CDD|221490 pfam12253, CAF1A, Chromatin assembly factor 1 subunit A. The
CAF-1 or chromatin assembly factor-1 consists of three
subunits, and this is the first, or A. The A domain is
uniquely required for the progression of S phase in
mouse cells, independent of its ability to promote
histone deposition but dependent on its ability to
interact with HP1 - heterochromatin protein 1-rich
heterochromatin domains next to centromeres that are
crucial for chromosome segregation during mitosis. This
HP1-CAF-1 interaction module functions as a built-in
replication control for heterochromatin, which, like a
control barrier, has an impact on S-phase progression
in addition to DNA-based checkpoints.
Length = 76
Score = 33.7 bits (78), Expect = 0.006
Identities = 10/31 (32%), Positives = 23/31 (74%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
D + ++++ +D + +D++D+++DDDDD D
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMDG 75
Score = 31.8 bits (73), Expect = 0.026
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 9 WMADDDNNDDDDDDDDDDDDDDDDDDDD 36
W +++ D + +D++D+++DDDDD D
Sbjct: 48 WEEEEEGEDLESEDEEDEEEDDDDDMDG 75
Score = 31.0 bits (71), Expect = 0.058
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDD 35
D EW ++ + + +D++D+++DDDDD D
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMDG 75
Score = 29.5 bits (67), Expect = 0.22
Identities = 8/30 (26%), Positives = 25/30 (83%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D++ + +++++ +D + +D++D+++DDDD+
Sbjct: 43 DSDAEWEEEEEGEDLESEDEEDEEEDDDDD 72
>gnl|CDD|233914 TIGR02538, type_IV_pilB, type IV-A pilus assembly ATPase PilB.
This model describes a protein of type IV pilus
biogenesis designated PilB in Pseudomonas aeruginosa but
PilF in Neisseria gonorrhoeae; the more common usage,
reflected here, is PilB. This protein is an ATPase
involved in protein export for pilin assembly and is
closely related to GspE (TIGR02533) of type II
secretion, also called the main terminal branch of the
general secretion pathway. Note that type IV pilus
systems are often divided into type IV-A and IV-B, with
the latter group including bundle-forming pilus,
mannose-sensitive hemagglutinin, etc. Members of this
family are found in type IV-A systems [Cell envelope,
Surface structures, Protein fate, Protein and peptide
secretion and trafficking].
Length = 564
Score = 35.8 bits (83), Expect = 0.006
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
+ D+D D ++ D D DD+ DD + D DDD I+
Sbjct: 146 LGDEDIGDLEELDVDAIDDEGPDDIEQDAVDDDAPIV 182
Score = 31.1 bits (71), Expect = 0.22
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
+ D+D D ++ D D DD+ DD + D V
Sbjct: 143 AKELGDEDIGDLEELDVDAIDDEGPDDIEQDAVD 176
Score = 31.1 bits (71), Expect = 0.26
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
+A + ++D D ++ D D DD+ DD + D
Sbjct: 142 LAKELGDEDIGDLEELDVDAIDDEGPDDIEQDAVD 176
Score = 28.8 bits (65), Expect = 1.6
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 3 MVDGEWWMADDDNNDDDDDDDDDDDDDDDDDDD 35
+ D + ++ + D DD+ DD + D DDD
Sbjct: 146 LGDEDIGDLEELDVDAIDDEGPDDIEQDAVDDD 178
Score = 28.1 bits (63), Expect = 2.5
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 7 EWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
E + D+ + D+D D ++ D D DD+ D+
Sbjct: 133 EKYYGGSDSLAKELGDEDIGDLEELDVDAIDDEGPDD 169
Score = 27.3 bits (61), Expect = 4.1
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 6 GEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+++ D + D+D D ++ D D DD+ DD
Sbjct: 133 EKYYGGSDSLAKELGDEDIGDLEELDVDAIDDEGPDDI 170
>gnl|CDD|177868 PLN02222, PLN02222, phosphoinositide phospholipase C 2.
Length = 581
Score = 35.4 bits (81), Expect = 0.010
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 21 DDDDDDDDDDDDDDDDDDDDDDEV 44
+ D +D + DDDDDDDD +D+
Sbjct: 285 NKSVDKNDSNGDDDDDDDDGEDKS 308
Score = 35.4 bits (81), Expect = 0.010
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDD 35
+ + D +D + DDDDDDDD +D
Sbjct: 285 NKSVDKNDSNGDDDDDDDDGED 306
Score = 35.0 bits (80), Expect = 0.013
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 15 NNDDDDDDDDDDDDDDDDDDDD 36
N D +D + DDDDDDDD +D
Sbjct: 285 NKSVDKNDSNGDDDDDDDDGED 306
Score = 34.6 bits (79), Expect = 0.015
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDD 41
D E W + + + D +D + DDDDDDDD +D
Sbjct: 270 DEEVWGREVPSFIQRNKSVDKNDSNGDDDDDDDDGED 306
Score = 33.1 bits (75), Expect = 0.058
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 22 DDDDDDDDDDDDDDDDDDDDDEVI 45
+ D +D + DDDDDDDD ++
Sbjct: 285 NKSVDKNDSNGDDDDDDDDGEDKS 308
>gnl|CDD|221620 pfam12527, DUF3727, Protein of unknown function (DUF3727). This
domain family is found in bacteria and eukaryotes, and
is approximately 100 amino acids in length.
Length = 100
Score = 33.7 bits (78), Expect = 0.010
Identities = 7/29 (24%), Positives = 20/29 (68%)
Query: 20 DDDDDDDDDDDDDDDDDDDDDDDEVIITC 48
+ ++D+ + +++DDDD+D+++E +
Sbjct: 19 PEPEEDEILELEEEDDDDEDEEEEYELLA 47
Score = 30.6 bits (70), Expect = 0.13
Identities = 7/30 (23%), Positives = 23/30 (76%)
Query: 18 DDDDDDDDDDDDDDDDDDDDDDDDDEVIIT 47
+ ++D+ + +++DDDD+D++++ E++ +
Sbjct: 19 PEPEEDEILELEEEDDDDEDEEEEYELLAS 48
Score = 29.1 bits (66), Expect = 0.44
Identities = 6/24 (25%), Positives = 19/24 (79%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDD 40
+ ++D+ + +++DDDD+D++++
Sbjct: 19 PEPEEDEILELEEEDDDDEDEEEE 42
Score = 28.3 bits (64), Expect = 0.79
Identities = 6/24 (25%), Positives = 18/24 (75%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDDDD 37
++D+ + +++DDDD+D++++
Sbjct: 19 PEPEEDEILELEEEDDDDEDEEEE 42
Score = 26.8 bits (60), Expect = 2.8
Identities = 9/29 (31%), Positives = 20/29 (68%)
Query: 4 VDGEWWMADDDNNDDDDDDDDDDDDDDDD 32
V GE ++D + +++DDDD+D++++
Sbjct: 14 VRGELPEPEEDEILELEEEDDDDEDEEEE 42
Score = 26.8 bits (60), Expect = 3.0
Identities = 6/24 (25%), Positives = 18/24 (75%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDD 36
+ +D+ + +++DDDD+D++++
Sbjct: 19 PEPEEDEILELEEEDDDDEDEEEE 42
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 35.2 bits (81), Expect = 0.010
Identities = 11/38 (28%), Positives = 23/38 (60%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
D E ++D++ ++ +DD DD++++D D +D D
Sbjct: 171 DEEESESEDESKSEESAEDDSDDEEEEDSDSEDYSQYD 208
Score = 34.0 bits (78), Expect = 0.029
Identities = 4/37 (10%), Positives = 17/37 (45%)
Query: 9 WMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
+ D + ++ ++ + ++D + + D+ D +
Sbjct: 210 MLVDSSDEEEGEEAPSINYNEDTSESESDESDSEISE 246
Score = 32.1 bits (73), Expect = 0.11
Identities = 3/32 (9%), Positives = 15/32 (46%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
++ + + ++D + + D+ D + + +
Sbjct: 221 EEAPSINYNEDTSESESDESDSEISESRSVSD 252
Score = 31.7 bits (72), Expect = 0.17
Identities = 7/43 (16%), Positives = 20/43 (46%), Gaps = 4/43 (9%)
Query: 2 MMVDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
M+VD D++ ++ + ++D + + D+ D + +
Sbjct: 210 MLVDSS----DEEEGEEAPSINYNEDTSESESDESDSEISESR 248
Score = 30.6 bits (69), Expect = 0.33
Identities = 7/39 (17%), Positives = 17/39 (43%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+GE + + N D + + D+ D + + D ++
Sbjct: 219 EGEEAPSINYNEDTSESESDESDSEISESRSVSDSEESS 257
Score = 30.2 bits (68), Expect = 0.50
Identities = 10/40 (25%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDD-----DDDDDDDDDEVI 45
A+DD++D++++D D +D D D+++ ++ I
Sbjct: 187 AEDDSDDEEEEDSDSEDYSQYDGMLVDSSDEEEGEEAPSI 226
Score = 30.2 bits (68), Expect = 0.50
Identities = 9/32 (28%), Positives = 22/32 (68%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D++ ++ +D+ ++ +DD DD++++D D E
Sbjct: 171 DEEESESEDESKSEESAEDDSDDEEEEDSDSE 202
Score = 30.2 bits (68), Expect = 0.51
Identities = 8/31 (25%), Positives = 21/31 (67%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
D +D+++ + +D+ ++ +DD DD+++E
Sbjct: 168 DKDDEEESESEDESKSEESAEDDSDDEEEED 198
Score = 30.2 bits (68), Expect = 0.55
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DD+ + +D+ ++ +DD DD++++D D
Sbjct: 170 DDEEESESEDESKSEESAEDDSDDEEEEDSDS 201
Score = 29.8 bits (67), Expect = 0.60
Identities = 5/39 (12%), Positives = 15/39 (38%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
E + + + ++D + + D+ D + + D
Sbjct: 215 SDEEEGEEAPSINYNEDTSESESDESDSEISESRSVSDS 253
Score = 29.8 bits (67), Expect = 0.72
Identities = 9/33 (27%), Positives = 21/33 (63%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
+++D DD+++ + +D+ ++ +DD DDE
Sbjct: 163 AKESSDKDDEEESESEDESKSEESAEDDSDDEE 195
Score = 29.4 bits (66), Expect = 0.87
Identities = 8/32 (25%), Positives = 20/32 (62%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DD + + +D+ ++ +DD DD++++D +
Sbjct: 169 KDDEEESESEDESKSEESAEDDSDDEEEEDSD 200
Score = 29.4 bits (66), Expect = 0.90
Identities = 9/33 (27%), Positives = 22/33 (66%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
A + ++ DD+++ + +D+ ++ +DD DD+E
Sbjct: 163 AKESSDKDDEEESESEDESKSEESAEDDSDDEE 195
Score = 29.0 bits (65), Expect = 1.2
Identities = 6/32 (18%), Positives = 16/32 (50%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D D D+++ ++ + ++D + + DE
Sbjct: 208 DGMLVDSSDEEEGEEAPSINYNEDTSESESDE 239
Score = 29.0 bits (65), Expect = 1.3
Identities = 7/29 (24%), Positives = 18/29 (62%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
+D+ ++ +DD DD++++D D ++
Sbjct: 176 ESEDESKSEESAEDDSDDEEEEDSDSEDY 204
Score = 27.9 bits (62), Expect = 2.5
Identities = 8/33 (24%), Positives = 22/33 (66%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+D D+ ++ + +D+ ++ +DD DD++++D
Sbjct: 167 SDKDDEEESESEDESKSEESAEDDSDDEEEEDS 199
Score = 27.1 bits (60), Expect = 5.2
Identities = 8/49 (16%), Positives = 19/49 (38%), Gaps = 10/49 (20%)
Query: 5 DGEWWMADDDNNDDDDDD----------DDDDDDDDDDDDDDDDDDDDE 43
E D++ D D +D D+++ ++ + ++D E
Sbjct: 186 SAEDDSDDEEEEDSDSEDYSQYDGMLVDSSDEEEGEEAPSINYNEDTSE 234
Score = 26.7 bits (59), Expect = 5.9
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 26 DDDDDDDDDDDDDDDDDEVIITCK 49
+D+DDDD+D D D V K
Sbjct: 282 SGSEDEDDDDEDIDPDQVVKKPVK 305
Score = 26.7 bits (59), Expect = 7.7
Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 5/47 (10%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDD-----DDDDDDDDDDDDDDDEVII 46
D E + D D D+++ ++ ++D + + D+ D E+
Sbjct: 200 DSEDYSQYDGMLVDSSDEEEGEEAPSINYNEDTSESESDESDSEISE 246
>gnl|CDD|218555 pfam05320, Pox_RNA_Pol_19, Poxvirus DNA-directed RNA polymerase
19 kDa subunit. This family contains several
DNA-directed RNA polymerase 19 kDa polypeptides. The
Poxvirus DNA-directed RNA polymerase (EC: 2.7.7.6)
catalyzes DNA-template-directed extension of the 3'-end
of an RNA strand by one nucleotide at a time.
Length = 167
Score = 34.3 bits (79), Expect = 0.011
Identities = 10/31 (32%), Positives = 23/31 (74%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
+++DD D + DDDD ++ +++++D++D E
Sbjct: 2 EDSDDIIDYESDDDDSEEYEEEEEDEEDAES 32
Score = 32.8 bits (75), Expect = 0.042
Identities = 10/30 (33%), Positives = 21/30 (70%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDD 39
M D D+ D + DDDD ++ +++++D++D
Sbjct: 1 MEDSDDIIDYESDDDDSEEYEEEEEDEEDA 30
Score = 31.2 bits (71), Expect = 0.13
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDEVIIT 47
+D DD D + DDDD ++ +++++D+E +
Sbjct: 2 EDSDDIIDYESDDDDSEEYEEEEEDEEDAES 32
Score = 31.2 bits (71), Expect = 0.16
Identities = 9/31 (29%), Positives = 23/31 (74%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+D++D D + DDDD ++ +++++D++D +
Sbjct: 2 EDSDDIIDYESDDDDSEEYEEEEEDEEDAES 32
Score = 30.1 bits (68), Expect = 0.40
Identities = 8/31 (25%), Positives = 20/31 (64%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDD 41
D +DDDD ++ +++++D++D + + D
Sbjct: 7 IIDYESDDDDSEEYEEEEEDEEDAESLESSD 37
>gnl|CDD|115196 pfam06524, NOA36, NOA36 protein. This family consists of several
NOA36 proteins which contain 29 highly conserved
cysteine residues. The function of this protein is
unknown.
Length = 314
Score = 34.5 bits (79), Expect = 0.014
Identities = 12/27 (44%), Positives = 21/27 (77%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DDD+ +D D+++D DDDD++D+D+
Sbjct: 274 DDDEGSSSNDYDEEEDGDDDDNEDNDD 300
Score = 34.2 bits (78), Expect = 0.024
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+DDD +D D+++D DDDD++D+DD + +
Sbjct: 273 SDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNH 305
Score = 29.5 bits (66), Expect = 0.69
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ND D+++D DDDD++D+DD + + D++
Sbjct: 278 GSSSNDYDEEEDGDDDDNEDNDDTNTNHGDED 309
Score = 26.5 bits (58), Expect = 7.7
Identities = 12/32 (37%), Positives = 24/32 (75%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
+ +D ++++D DDDD++D+DD + + D+D D
Sbjct: 280 SSNDYDEEEDGDDDDNEDNDDTNTNHGDEDCD 311
>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230;
Provisional.
Length = 2849
Score = 35.0 bits (80), Expect = 0.014
Identities = 16/34 (47%), Positives = 28/34 (82%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+A++D + D+ DDDD+D+D+DDDD++DD++E
Sbjct: 140 LAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEE 173
Score = 35.0 bits (80), Expect = 0.016
Identities = 17/36 (47%), Positives = 30/36 (83%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
M+ DN DDDD+D+D+DDDD++DD+++++++E I
Sbjct: 145 MSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEI 180
Score = 33.1 bits (75), Expect = 0.061
Identities = 15/41 (36%), Positives = 31/41 (75%)
Query: 4 VDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
+ E D+ DDDD+D+D+DDDD++DD++++++++E+
Sbjct: 140 LAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEI 180
Score = 30.4 bits (68), Expect = 0.44
Identities = 17/47 (36%), Positives = 35/47 (74%), Gaps = 6/47 (12%)
Query: 3 MVDGEWWMADDDNNDDDDDDDDDDDDDDDDDDD------DDDDDDDE 43
M + ++ DDD+ D+D+DDDD++DD+++++++ DD+D++DE
Sbjct: 145 MSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDE 191
Score = 30.4 bits (68), Expect = 0.54
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 15 NNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ ++D D+ DDDD+D+D+DDDDE
Sbjct: 139 HLAEEDMSPRDNFVIDDDDEDEDEDDDDE 167
>gnl|CDD|220888 pfam10846, DUF2722, Protein of unknown function (DUF2722). This
eukaryotic family of proteins has no known function.
Length = 373
Score = 34.5 bits (79), Expect = 0.015
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DDD D D + ++++ D + DD+DD
Sbjct: 310 NEDDDPPDSDSKERKNEENSDPESTPSDDNDDKT 343
Score = 31.8 bits (72), Expect = 0.14
Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDD------DDDDDEVI 45
++ ++DDD D D + ++++ D DD+DD+
Sbjct: 304 SEASQVNEDDDPPDSDSKERKNEENSDPESTPSDDNDDKTC 344
Score = 29.8 bits (67), Expect = 0.63
Identities = 11/52 (21%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLIS----RLTTQR 59
++D++ D D + ++++ D + DD+D+ + + S R T R
Sbjct: 310 NEDDDPPDSDSKERKNEENSDPESTPSDDNDDKTCSESSSRSESPNRTNTGR 361
>gnl|CDD|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa). Members of this
family of proteins are part of the yeast nuclear pore
complex-associated pre-60S ribosomal subunit. The family
functions as a highly conserved exonuclease that is
required for the 5'-end maturation of 5.8S and 25S
rRNAs, demonstrating that 5'-end processing also has a
redundant pathway. Nop25 binds late pre-60S ribosomes,
accompanying them from the nucleolus to the nuclear
periphery; and there is evidence for both physical and
functional links between late 60S subunit processing and
export.
Length = 134
Score = 33.5 bits (77), Expect = 0.018
Identities = 11/48 (22%), Positives = 26/48 (54%), Gaps = 11/48 (22%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDD-----------DDDDDDDDDDEVIIT 47
+++N+D++D + +D +D +DD D +++ D+D+ T
Sbjct: 79 LEEENDDEEDAETEDTEDVEDDEWEGFPEPTVTDYEEEYIDEDKYKTT 126
Score = 30.4 bits (69), Expect = 0.24
Identities = 11/52 (21%), Positives = 26/52 (50%), Gaps = 11/52 (21%)
Query: 11 ADDDNNDDDDDDDDDDDDDD-----------DDDDDDDDDDDDEVIITCKTL 51
++D+ +D + +D +D +DD D +++ D+D + +T + L
Sbjct: 81 EENDDEEDAETEDTEDVEDDEWEGFPEPTVTDYEEEYIDEDKYKTTVTVEEL 132
Score = 30.0 bits (68), Expect = 0.29
Identities = 7/27 (25%), Positives = 19/27 (70%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDDDD 42
++++DD++D + +D +D +DD+ +
Sbjct: 77 KLLEEENDDEEDAETEDTEDVEDDEWE 103
>gnl|CDD|220785 pfam10498, IFT57, Intra-flagellar transport protein 57. Eukaryotic
cilia and flagella are specialised organelles found at
the periphery of cells of diverse organisms.
Intra-flagellar transport (IFT) is required for the
assembly and maintenance of eukaryotic cilia and
flagella, and consists of the bidirectional movement of
large protein particles between the base and the distal
tip of the organelle. IFT particles contain multiple
copies of two distinct protein complexes, A and B, which
contain at least 6 and 11 protein subunits. IFT57 is
part of complex B but is not, however, required for the
core subunits to stay associated. This protein is known
as Huntington-interacting protein-1 in humans.
Length = 355
Score = 34.3 bits (79), Expect = 0.019
Identities = 8/34 (23%), Positives = 21/34 (61%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
D++ N D+DD + ++ +++ + ++ DDD+
Sbjct: 131 DEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQ 164
Score = 33.5 bits (77), Expect = 0.035
Identities = 11/47 (23%), Positives = 26/47 (55%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTTQ 58
+++N D+DD + ++ +++ + ++ DDD+ K + LT Q
Sbjct: 132 EEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETKYKRGDTSLTPQ 178
Score = 32.0 bits (73), Expect = 0.10
Identities = 10/41 (24%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Query: 16 NDDDDDDDDDDDDDDD------DDDDDDDDDDDEVIITCKT 50
N++D++++ D+DD + ++ + ++ DDDE K
Sbjct: 128 NEEDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETKY 168
Score = 31.6 bits (72), Expect = 0.14
Identities = 5/32 (15%), Positives = 18/32 (56%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
D+D+ + ++ +++ + ++ DDD+ +
Sbjct: 136 VDEDDAEIILEEVEEEVEIEEVDDDEGTQETK 167
Score = 30.8 bits (70), Expect = 0.25
Identities = 6/33 (18%), Positives = 21/33 (63%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
++D ++ D+DD + ++ +++ + ++ DD+
Sbjct: 129 EEDEEENVDEDDAEIILEEVEEEVEIEEVDDDE 161
Score = 29.7 bits (67), Expect = 0.78
Identities = 4/39 (10%), Positives = 14/39 (35%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKT 50
+++ ++ DDD+ + D + ++
Sbjct: 149 EEEVEIEEVDDDEGTQETKYKRGDTSLTPQAKDVLESLI 187
Score = 28.5 bits (64), Expect = 1.5
Identities = 8/50 (16%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 12 DDDNND-----DDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLT 56
+DD +++ + ++ DDD+ + D + K ++ L
Sbjct: 138 EDDAEIILEEVEEEVEIEEVDDDEGTQETKYKRGDTSLTPQAKDVLESLI 187
>gnl|CDD|221333 pfam11942, Spt5_N, Spt5 transcription elongation factor, acidic
N-terminal. This is the very acidic N-terminal region
of the early transcription elongation factor Spt5. The
Spt5-Spt4 complex regulates early transcription
elongation by RNA polymerase II and has an imputed role
in pre-mRNA processing via its physical association
with mRNA capping enzymes. The actual function of this
N-terminal domain is not known although it is
dispensable for binding to Spt4.
Length = 92
Score = 32.8 bits (75), Expect = 0.020
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTTQRWLD 62
D + DD+++++++++DD +D D+D+ DE RL +R +
Sbjct: 3 DTEAEVDDEEEEEEEEEDDLEDLSDEDEFIDEAEAEDDRRHRRLDRRREKE 53
>gnl|CDD|220605 pfam10156, Med17, Subunit 17 of Mediator complex. This Mediator
complex subunit was formerly known as Srb4 in yeasts or
Trap80 in Drosophila and human. The Med17 subunit is
located within the head domain and is essential for
cell viability to the extent that a mutant strain of
cerevisiae lacking it shows all RNA polymerase
II-dependent transcription ceasing at non-permissive
temperatures.
Length = 454
Score = 34.3 bits (79), Expect = 0.021
Identities = 11/35 (31%), Positives = 24/35 (68%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
+A + D ++ D+++DD++DD+DD +++ D V
Sbjct: 58 IAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTV 92
Score = 29.3 bits (66), Expect = 0.95
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISR 54
+ D ++ D+++DD++DD+DD +E T +
Sbjct: 60 KEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEEFPKA 98
>gnl|CDD|225880 COG3343, RpoE, DNA-directed RNA polymerase, delta subunit
[Transcription].
Length = 175
Score = 33.6 bits (77), Expect = 0.023
Identities = 14/32 (43%), Positives = 25/32 (78%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D+D +DD+ + +DD+ D+D+DDD+D++DE
Sbjct: 141 DEDEDDDEIVEILIEDDEVDEDEDDDEDEEDE 172
Score = 32.8 bits (75), Expect = 0.037
Identities = 16/32 (50%), Positives = 26/32 (81%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DD+N+D+D+DDD+ + +DD+ D+D+DDDE
Sbjct: 136 DDENDDEDEDDDEIVEILIEDDEVDEDEDDDE 167
Score = 32.4 bits (74), Expect = 0.052
Identities = 13/33 (39%), Positives = 25/33 (75%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DD++ DDD+ + +DD+ D+D+DDD+D+++
Sbjct: 139 NDDEDEDDDEIVEILIEDDEVDEDEDDDEDEED 171
Score = 32.0 bits (73), Expect = 0.070
Identities = 19/38 (50%), Positives = 29/38 (76%), Gaps = 7/38 (18%)
Query: 13 DDNNDDDDDDDD-------DDDDDDDDDDDDDDDDDDE 43
DD NDD+D+DDD +DD+ D+D+DDD+D++D+E
Sbjct: 136 DDENDDEDEDDDEIVEILIEDDEVDEDEDDDEDEEDEE 173
Score = 30.1 bits (68), Expect = 0.32
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 4 VDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ E D +D++DD+D+DDD+ + +DD+ D+DE
Sbjct: 124 KEEEEDDEVDSLDDENDDEDEDDDEIVEILIEDDEVDEDE 163
Score = 29.3 bits (66), Expect = 0.62
Identities = 14/37 (37%), Positives = 29/37 (78%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
+ D++ ++++DD+ D DD++DD+D+DDD+ E++I
Sbjct: 118 LDYDEDKEEEEDDEVDSLDDENDDEDEDDDEIVEILI 154
Score = 29.0 bits (65), Expect = 0.76
Identities = 10/25 (40%), Positives = 20/25 (80%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDD 37
+ +DD+ D+D+DDD+D++D++D
Sbjct: 150 VEILIEDDEVDEDEDDDEDEEDEED 174
Score = 28.6 bits (64), Expect = 1.4
Identities = 12/32 (37%), Positives = 26/32 (81%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+D+ + D+D ++++DD+ D DD++DD+D+D+
Sbjct: 115 EDELDYDEDKEEEEDDEVDSLDDENDDEDEDD 146
Score = 28.2 bits (63), Expect = 1.7
Identities = 13/32 (40%), Positives = 26/32 (81%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D+ + D+D ++++DD+ D DD++DD+D+DD+
Sbjct: 116 DELDYDEDKEEEEDDEVDSLDDENDDEDEDDD 147
Score = 27.8 bits (62), Expect = 1.9
Identities = 10/25 (40%), Positives = 20/25 (80%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDD 36
+ +DD+ D+D+DDD+D++D++D
Sbjct: 150 VEILIEDDEVDEDEDDDEDEEDEED 174
Score = 27.8 bits (62), Expect = 2.2
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
++D+ D DD++DD+D+DDD+ + +DDEV
Sbjct: 126 EEEDDEVDSLDDENDDEDEDDDEIVEILIEDDEV 159
Score = 27.4 bits (61), Expect = 2.7
Identities = 13/32 (40%), Positives = 25/32 (78%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D+D D D+D ++++DD+ D DD++DD+D++
Sbjct: 114 DEDELDYDEDKEEEEDDEVDSLDDENDDEDED 145
Score = 25.9 bits (57), Expect = 9.1
Identities = 10/25 (40%), Positives = 19/25 (76%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDD 35
+ DD+ D+D+DDD+D++D++D
Sbjct: 150 VEILIEDDEVDEDEDDDEDEEDEED 174
>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP),
alpha subunit. The alpha-subunit of the TRAP complex
(TRAP alpha) is a single-spanning membrane protein of
the endoplasmic reticulum (ER) which is found in
proximity of nascent polypeptide chains translocating
across the membrane.
Length = 281
Score = 33.6 bits (77), Expect = 0.028
Identities = 10/34 (29%), Positives = 26/34 (76%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
A+DD D+D++D+ ++D+++ ++++D++ EV
Sbjct: 40 AEDDVVDEDEEDEAVVEEDENELTEEEEDEEGEV 73
Score = 28.2 bits (63), Expect = 2.3
Identities = 9/41 (21%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 11 ADDDNNDDDDDDDDDDDDD----DDDDDDDDDDDDDEVIIT 47
+D +DD D+D++D+ +D+++ ++++D+E +
Sbjct: 34 LTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGEVK 74
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation factor
3 (eIF3). In yeast it is called Hcr1. The Saccharomyces
cerevisiae protein eIF3j (HCR1) has been shown to be
required for processing of 20S pre-rRNA and binds to 18S
rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 33.5 bits (77), Expect = 0.031
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDDD 36
+DDDDD D DDD DDDDD
Sbjct: 218 GGANDDDDDYDGYDDDFYDDDDD 240
Score = 33.5 bits (77), Expect = 0.035
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 15 NNDDDDDDDDDDDDDDDDDDDDD 37
+DDDDD D DDD DDDDD
Sbjct: 218 GGANDDDDDYDGYDDDFYDDDDD 240
Score = 32.7 bits (75), Expect = 0.064
Identities = 14/20 (70%), Positives = 15/20 (75%)
Query: 19 DDDDDDDDDDDDDDDDDDDD 38
+DDDDD D DDD DDDDD
Sbjct: 221 NDDDDDYDGYDDDFYDDDDD 240
Score = 32.7 bits (75), Expect = 0.064
Identities = 14/20 (70%), Positives = 15/20 (75%)
Query: 20 DDDDDDDDDDDDDDDDDDDD 39
+DDDDD D DDD DDDDD
Sbjct: 221 NDDDDDYDGYDDDFYDDDDD 240
Score = 32.7 bits (75), Expect = 0.064
Identities = 14/20 (70%), Positives = 15/20 (75%)
Query: 21 DDDDDDDDDDDDDDDDDDDD 40
+DDDDD D DDD DDDDD
Sbjct: 221 NDDDDDYDGYDDDFYDDDDD 240
Score = 32.7 bits (75), Expect = 0.064
Identities = 14/20 (70%), Positives = 15/20 (75%)
Query: 22 DDDDDDDDDDDDDDDDDDDD 41
+DDDDD D DDD DDDDD
Sbjct: 221 NDDDDDYDGYDDDFYDDDDD 240
Score = 32.7 bits (75), Expect = 0.064
Identities = 14/20 (70%), Positives = 15/20 (75%)
Query: 23 DDDDDDDDDDDDDDDDDDDD 42
+DDDDD D DDD DDDDD
Sbjct: 221 NDDDDDYDGYDDDFYDDDDD 240
Score = 30.4 bits (69), Expect = 0.35
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDD 33
+ +++DDD D DDD DDDDD
Sbjct: 217 VGGANDDDDDYDGYDDDFYDDDDD 240
Score = 29.2 bits (66), Expect = 0.77
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 24 DDDDDDDDDDDDDDDDDDDEV 44
DD+D+DDD D D+++D+E
Sbjct: 25 DDEDEDDDVKDSWDEEEDEEK 45
Score = 28.5 bits (64), Expect = 1.7
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 20 DDDDDDDDDDDDDDDDDDDDDDDEVI 45
DD+D+DDD D D+++D++ ++E
Sbjct: 25 DDEDEDDDVKDSWDEEEDEEKEEEKA 50
Score = 27.3 bits (61), Expect = 3.3
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 25 DDDDDDDDDDDDDDDDDDE 43
+DDDDD D DDD DDD+
Sbjct: 221 NDDDDDYDGYDDDFYDDDD 239
Score = 26.9 bits (60), Expect = 4.5
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDD 38
DD+D+DDD D D+++D++ +
Sbjct: 25 DDEDEDDDVKDSWDEEEDEEKE 46
Score = 26.9 bits (60), Expect = 4.5
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 18 DDDDDDDDDDDDDDDDDDDDDD 39
DD+D+DDD D D+++D++ +
Sbjct: 25 DDEDEDDDVKDSWDEEEDEEKE 46
Score = 26.9 bits (60), Expect = 4.5
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 19 DDDDDDDDDDDDDDDDDDDDDD 40
DD+D+DDD D D+++D++ +
Sbjct: 25 DDEDEDDDVKDSWDEEEDEEKE 46
>gnl|CDD|214818 smart00784, SPT2, SPT2 chromatin protein. This entry includes
the Saccharomyces cerevisiae protein SPT2 which is a
chromatin protein involved in transcriptional
regulation.
Length = 106
Score = 32.0 bits (73), Expect = 0.038
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
+ DD D+++D+D DD +DDD++DD D I
Sbjct: 9 RRSRDDYDEEEDEDMDDFIEDDDEEDDYDRDEI 41
Score = 31.2 bits (71), Expect = 0.082
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
+ DD D+++D+D DD +DDD++DD D + I
Sbjct: 6 ERSRRSRDDYDEEEDEDMDDFIEDDDEEDDYDRDEI 41
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 33.8 bits (77), Expect = 0.038
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
A+D N ++DDD ++ +++D + D D+ E
Sbjct: 3824 AEDITNTLNEDDDLEELANEEDTANQSDLDESEAR 3858
Score = 28.0 bits (62), Expect = 3.3
Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDD---DDEV 44
+D + +DD+ +D D + +D+++ DD DDE+
Sbjct: 3933 SDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEI 3969
Score = 27.7 bits (61), Expect = 3.6
Identities = 6/31 (19%), Positives = 18/31 (58%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
D ++++ D ++++ D D++ +D +D
Sbjct: 3869 KDSVVSENENSDSEEENQDLDEEVNDIPEDL 3899
Score = 27.7 bits (61), Expect = 4.3
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDD---DDDDDDDE 43
+DDN +D D + +D+++ DD DD+ D
Sbjct: 3939 EDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDI 3973
>gnl|CDD|222648 pfam14283, DUF4366, Domain of unknown function (DUF4366). This
family of proteins is found in bacteria and eukaryotes.
Proteins in this family are typically between 227 and
387 amino acids in length.
Length = 213
Score = 33.1 bits (76), Expect = 0.041
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 22 DDDDDDDDDDDDDDDDDDDDDE 43
DDD D+ D D+D+++DDE
Sbjct: 189 GAPDDDLDEYDYGDEDEEEDDE 210
Score = 32.7 bits (75), Expect = 0.051
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ DDD D+ D D+D+++DD+
Sbjct: 186 QEKGAPDDDLDEYDYGDEDEEEDDEPPW 213
Score = 31.2 bits (71), Expect = 0.17
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 15 NNDDDDDDDDDDDDDDDDDDDDDDD 39
DDD D+ D D+D+++DD+
Sbjct: 189 GAPDDDLDEYDYGDEDEEEDDEPPW 213
Score = 30.0 bits (68), Expect = 0.43
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDDDDD 38
DDD D+ D D+D+++DD+
Sbjct: 189 GAPDDDLDEYDYGDEDEEEDDEPPW 213
Score = 28.1 bits (63), Expect = 1.7
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDD 37
+DD D+ D D+D+++DD+
Sbjct: 189 GAPDDDLDEYDYGDEDEEEDDEPPW 213
Score = 28.1 bits (63), Expect = 1.8
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDD 36
++D D+ D D+D+++DD+
Sbjct: 188 KGAPDDDLDEYDYGDEDEEEDDEPPW 213
>gnl|CDD|218055 pfam04386, SspB, Stringent starvation protein B. Escherichia coli
stringent starvation protein B (SspB), is thought to
enhance the specificity of degradation of tmRNA-tagged
proteins by the ClpXP protease. The tmRNA tag, also
known as ssrA, is an 11-aa peptide added to the C
terminus of proteins stalled during translation, targets
proteins for degradation by ClpXP and ClpAP. SspB a
cytoplasmic protein that specifically binds to residues
1-4 and 7 of the tag. Binding of SspB enhances
degradation of tagged proteins by ClpX, and masks
sequence elements important for ClpA interactions,
inhibiting degradation by ClpA. However, more recent
work has cast doubt on the importance of SspB in
wild-type cells. SspB is encoded in an operon whose
synthesis is stimulated by carbon, amino acid, and
phosphate starvation. SspB may play a special role
during nutrient stress, for example by ensuring rapid
degradation of the products of stalled translation,
without causing a global increase in degradation of all
ClpXP substrates.
Length = 153
Score = 32.6 bits (75), Expect = 0.042
Identities = 9/34 (26%), Positives = 21/34 (61%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ + D++++++DDD DD +D+D + D +
Sbjct: 109 QFEPEEADEEEEEEDDDADDSPEDEDPEPKDPPK 142
Score = 32.2 bits (74), Expect = 0.064
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
+++ +DD DD +D+D + D +V+
Sbjct: 117 EEEEEEDDDADDSPEDEDPEPKDPPKTKGRPSLKVV 152
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 33.3 bits (76), Expect = 0.044
Identities = 9/61 (14%), Positives = 26/61 (42%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTTQRWLDVGPSWTED 70
+ +N +++ + + D D ++ ++D + + + +S R V P ++
Sbjct: 475 EVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNSEMAGISRMSEGQQPRGSSVQPESPQE 534
Query: 71 E 71
E
Sbjct: 535 E 535
Score = 29.1 bits (65), Expect = 1.3
Identities = 3/33 (9%), Positives = 26/33 (78%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
+ +++++++++++ + ++++ +D+++++EV
Sbjct: 444 SVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEV 476
Score = 28.0 bits (62), Expect = 2.9
Identities = 4/49 (8%), Positives = 28/49 (57%), Gaps = 9/49 (18%)
Query: 5 DGEWWMADDDNNDDDDDDD---------DDDDDDDDDDDDDDDDDDDEV 44
+ E + ++ +++++++ + +D++++++ + D+ ++E+
Sbjct: 438 ESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEM 486
>gnl|CDD|236558 PRK09545, znuA, high-affinity zinc transporter periplasmic
component; Reviewed.
Length = 311
Score = 33.1 bits (76), Expect = 0.047
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 15 NNDDDDDDDDDDDDDDDDDDDDDDDDD 41
DD DDD D + D+D +
Sbjct: 116 GAHDDHHDDDHDHAGHEKSDEDHHHGE 142
Score = 33.1 bits (76), Expect = 0.048
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDDDD 42
DD DDD D + D+D +
Sbjct: 116 GAHDDHHDDDHDHAGHEKSDEDHHHGE 142
Score = 32.7 bits (75), Expect = 0.065
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 18 DDDDDDDDDDDDDDDDDDDDDDDDDE 43
DD DDD D + D+D E
Sbjct: 117 AHDDHHDDDHDHAGHEKSDEDHHHGE 142
Score = 30.4 bits (69), Expect = 0.36
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDD 36
A DD++DDD D + D+D +
Sbjct: 117 AHDDHHDDDHDHAGHEKSDEDHHHGE 142
Score = 30.0 bits (68), Expect = 0.52
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDD 38
M ++ DDD D + D+D +
Sbjct: 114 MKGAHDDHHDDDHDHAGHEKSDEDHHHGE 142
Score = 28.4 bits (64), Expect = 1.8
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDDDDDD 39
++D DDD D + D+D +
Sbjct: 117 AHDDHHDDDHDHAGHEKSDEDHHHGE 142
>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional.
Length = 584
Score = 33.1 bits (76), Expect = 0.054
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
++ +DDDD +D+++ DD E
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAE 293
Score = 30.8 bits (70), Expect = 0.37
Identities = 9/39 (23%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDD---DEVII 46
++ +DDDD +D+++ DD +D +E+++
Sbjct: 264 PPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEEIVL 302
>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT. This family
consists of several bacterial cobalamin biosynthesis
(CobT) proteins. CobT is involved in the transformation
of precorrin-3 into cobyrinic acid.
Length = 282
Score = 32.9 bits (75), Expect = 0.056
Identities = 10/32 (31%), Positives = 23/32 (71%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDD 41
+ D+ + D +D++D+DD +D+DDD ++++
Sbjct: 212 LGDEPESADSEDNEDEDDPKEDEDDDQGEEEE 243
Score = 30.9 bits (70), Expect = 0.22
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D+ D +D++D+DD +D+DDD ++++
Sbjct: 214 DEPESADSEDNEDEDDPKEDEDDDQGEEEES 244
Score = 29.8 bits (67), Expect = 0.62
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDD 40
AD ++N+D+DD +D+DDD ++++ D
Sbjct: 219 ADSEDNEDEDDPKEDEDDDQGEEEESGSSD 248
Score = 28.6 bits (64), Expect = 1.5
Identities = 12/34 (35%), Positives = 24/34 (70%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
MA++ ++ + D +D++D+DD +D+DDD +E
Sbjct: 208 MAEELGDEPESADSEDNEDEDDPKEDEDDDQGEE 241
>gnl|CDD|217450 pfam03247, Prothymosin, Prothymosin/parathymosin family.
Prothymosin alpha and parathymosin are two ubiquitous
small acidic nuclear proteins that are thought to be
involved in cell cycle progression, proliferation, and
cell differentiation.
Length = 106
Score = 31.9 bits (72), Expect = 0.056
Identities = 6/32 (18%), Positives = 25/32 (78%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
DD +++++ D+DD++++ + ++++ ++++E
Sbjct: 48 DDEMEEEEEVDEDDEEEEGEGEEEEGEEEEET 79
Score = 30.3 bits (68), Expect = 0.18
Identities = 7/39 (17%), Positives = 27/39 (69%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCK 49
DD+ ++++ D+DD++++ + ++++ +++++ T K
Sbjct: 47 GDDEMEEEEEVDEDDEEEEGEGEEEEGEEEEETEGATGK 85
Score = 28.0 bits (62), Expect = 1.2
Identities = 5/33 (15%), Positives = 26/33 (78%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
A + +++ +++++ D+DD++++ + ++++ ++E
Sbjct: 44 AQEGDDEMEEEEEVDEDDEEEEGEGEEEEGEEE 76
Score = 27.2 bits (60), Expect = 2.3
Identities = 4/30 (13%), Positives = 23/30 (76%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDD 39
M +++ D+DD++++ + ++++ +++++ +
Sbjct: 51 MEEEEEVDEDDEEEEGEGEEEEGEEEEETE 80
Score = 26.1 bits (57), Expect = 5.7
Identities = 6/48 (12%), Positives = 28/48 (58%), Gaps = 8/48 (16%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDD--------DDDDDEV 44
D E ++ + DD++++ + ++++ +++++ + +D++D+
Sbjct: 48 DDEMEEEEEVDEDDEEEEGEGEEEEGEEEEETEGATGKRAAEDEEDDA 95
Score = 25.7 bits (56), Expect = 6.8
Identities = 7/33 (21%), Positives = 24/33 (72%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+++N + DD+ +++++ D+DD++++ + +E
Sbjct: 38 ENEENGAQEGDDEMEEEEEVDEDDEEEEGEGEE 70
>gnl|CDD|151714 pfam11273, DUF3073, Protein of unknown function (DUF3073). This
family of proteins with unknown function appears to be
restricted to Actinobacteria.
Length = 64
Score = 30.7 bits (70), Expect = 0.056
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDD 39
+ + DDDD +DD DD D D DD+
Sbjct: 36 SSRSSADDDDQYEDDYDDYDKYADYDDER 64
Score = 30.7 bits (70), Expect = 0.059
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDDDD 42
DDDD +DD DD D D DD+
Sbjct: 38 RSSADDDDQYEDDYDDYDKYADYDDER 64
Score = 30.7 bits (70), Expect = 0.065
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDDDDDDDD 41
+ DDDD +DD DD D D DD+
Sbjct: 37 SRSSADDDDQYEDDYDDYDKYADYDDER 64
Score = 30.3 bits (69), Expect = 0.081
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DDDD +DD DD D D DDE
Sbjct: 37 SRSSADDDDQYEDDYDDYDKYADYDDE 63
Score = 30.3 bits (69), Expect = 0.083
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DDDD +DD DD D D DD+
Sbjct: 38 RSSADDDDQYEDDYDDYDKYADYDDER 64
Score = 29.9 bits (68), Expect = 0.10
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDD 40
++ DDDD +DD DD D D DD+
Sbjct: 37 SRSSADDDDQYEDDYDDYDKYADYDDER 64
>gnl|CDD|165163 PHA02811, PHA02811, putative host range protein; Provisional.
Length = 197
Score = 32.7 bits (74), Expect = 0.057
Identities = 14/28 (50%), Positives = 23/28 (82%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ DDDDD+D+ D+D++DD+ +D +DD E
Sbjct: 170 SSDDDDDNDNADNDEEDDEVNDIEDDYE 197
Score = 32.3 bits (73), Expect = 0.074
Identities = 13/26 (50%), Positives = 23/26 (88%)
Query: 15 NNDDDDDDDDDDDDDDDDDDDDDDDD 40
++DDDDD+D+ D+D++DD+ +D +DD
Sbjct: 170 SSDDDDDNDNADNDEEDDEVNDIEDD 195
Score = 32.3 bits (73), Expect = 0.076
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
D DDDDD+D+ D+D++DD+ +D +DD
Sbjct: 165 DYCIISSDDDDDNDNADNDEEDDEVNDIEDD 195
Score = 31.2 bits (70), Expect = 0.16
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
A D DDDDD+D+ D+D++DD+ +D +D+
Sbjct: 163 ACDYCIISSDDDDDNDNADNDEEDDEVNDIEDD 195
Score = 30.4 bits (68), Expect = 0.35
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
D D DDDDD+D+ D+D++DDEV
Sbjct: 162 DACDYCIISSDDDDDNDNADNDEEDDEV 189
Score = 28.9 bits (64), Expect = 0.99
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
D D DDDDD+D+ D+D++DD+ +++
Sbjct: 162 DACDYCIISSDDDDDNDNADNDEEDDEVNDI 192
>gnl|CDD|216161 pfam00865, Osteopontin, Osteopontin.
Length = 293
Score = 32.8 bits (74), Expect = 0.059
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DDD++DDDDD D D + ++ DD D DD +
Sbjct: 67 DDDDDDDDDDHVDSQDSNSNESDDADHTDDSD 98
Score = 32.4 bits (73), Expect = 0.077
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
M DDD++DDDD D D + ++ DD D DD D
Sbjct: 66 MDDDDDDDDDDHVDSQDSNSNESDDADHTDDSD 98
Score = 32.4 bits (73), Expect = 0.086
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
++ DDDDDDDDDD D D + ++ DD D
Sbjct: 64 EHMDDDDDDDDDDHVDSQDSNSNESDDAD 92
Score = 30.8 bits (69), Expect = 0.27
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
+ +DDDDDDDDD D D + ++ DD D
Sbjct: 64 EHMDDDDDDDDDDHVDSQDSNSNESDDADH 93
Score = 29.3 bits (65), Expect = 0.99
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
+ DDDDDDDDDD D D + ++ D+
Sbjct: 64 EHMDDDDDDDDDDHVDSQDSNSNESDDA 91
Score = 28.1 bits (62), Expect = 2.1
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+N+ + DDDDDDDDDD D D + +E
Sbjct: 57 SKSNESHEHMDDDDDDDDDDHVDSQDSNSNE 87
Score = 27.8 bits (61), Expect = 2.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
N + DDDDDDDDDD D D + ++
Sbjct: 57 SKSNESHEHMDDDDDDDDDDHVDSQDSNSNE 87
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 32.8 bits (75), Expect = 0.072
Identities = 7/34 (20%), Positives = 18/34 (52%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D+ ++ ++ DDD +++ DD+ + + E
Sbjct: 232 SRLDEMSEGLLEESDDDGEEESDDESAWEGFESE 265
Score = 30.1 bits (68), Expect = 0.53
Identities = 6/32 (18%), Positives = 17/32 (53%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDD 41
M++ + DDD +++ DD+ + + + +
Sbjct: 237 MSEGLLEESDDDGEEESDDESAWEGFESEYEP 268
Score = 30.1 bits (68), Expect = 0.57
Identities = 5/33 (15%), Positives = 17/33 (51%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCK 49
++ DDD +++ DD+ + + + + + +
Sbjct: 242 LEESDDDGEEESDDESAWEGFESEYEPINKPVR 274
Score = 29.7 bits (67), Expect = 0.74
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
MA + + D+ + ++ DDD +++ DD+ E
Sbjct: 227 MAPEASRLDEMSEGLLEESDDDGEEESDDESAWE 260
Score = 29.3 bits (66), Expect = 0.88
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLT-TQR 59
++ DDD +++ DD+ + + + I R T QR
Sbjct: 240 GLLEESDDDGEEESDDESAWEGFESEYEPINKPVRPKRKTKAQR 283
Score = 27.4 bits (61), Expect = 4.5
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISR 54
+ +DDD +++ DD+ + + + + + V KT R
Sbjct: 242 LEESDDDGEEESDDESAWEGFESEYEPINKPVRPKRKTKAQR 283
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 32.4 bits (74), Expect = 0.080
Identities = 10/37 (27%), Positives = 24/37 (64%)
Query: 9 WMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
++D + +D+D++D+D D D + D+D++ ++E
Sbjct: 421 EISDAEEDDEDEEDEDGDGDVEMSAVDNDEEKEEEDK 457
Score = 29.3 bits (66), Expect = 0.87
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
D+D D+D D D + D+D++ +++D +
Sbjct: 427 EDDEDEEDEDGDGDVEMSAVDNDEEKEEEDKEAIP 461
Score = 29.0 bits (65), Expect = 1.3
Identities = 11/37 (29%), Positives = 25/37 (67%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIIT 47
A++D+ D++D+D D D + D+D++ +++D+ I
Sbjct: 425 AEEDDEDEEDEDGDGDVEMSAVDNDEEKEEEDKEAIP 461
Score = 28.6 bits (64), Expect = 1.5
Identities = 8/35 (22%), Positives = 20/35 (57%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
+D+ ++D D D + D+D++ +++D + I
Sbjct: 430 EDEEDEDGDGDVEMSAVDNDEEKEEEDKEAIPSTI 464
Score = 28.6 bits (64), Expect = 1.7
Identities = 8/36 (22%), Positives = 19/36 (52%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
D+++ D D D + D+D++ +++D + I
Sbjct: 429 DEDEEDEDGDGDVEMSAVDNDEEKEEEDKEAIPSTI 464
Score = 27.8 bits (62), Expect = 3.3
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDDDDEVIIT 47
+D ++DD+D++D+D D D + D+DE
Sbjct: 423 SDAEEDDEDEEDEDGDGDVEMSAVDNDEEKEE 454
Score = 27.4 bits (61), Expect = 4.1
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+N D+ ++ D ++DD+D++D+D D D E
Sbjct: 413 ENKDESVEEISDAEEDDEDEEDEDGDGDVE 442
Score = 27.0 bits (60), Expect = 6.2
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
D ++DD+D++D+D D D + D
Sbjct: 418 SVEEISDAEEDDEDEEDEDGDGDVEMSAVDNDE 450
Score = 27.0 bits (60), Expect = 6.4
Identities = 10/32 (31%), Positives = 23/32 (71%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
++ ++ ++DD+D++D+D D D + D+D+E
Sbjct: 420 EEISDAEEDDEDEEDEDGDGDVEMSAVDNDEE 451
Score = 26.6 bits (59), Expect = 6.6
Identities = 8/34 (23%), Positives = 20/34 (58%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
++ + ++ D ++DD+D++D+D D D +
Sbjct: 411 KPENKDESVEEISDAEEDDEDEEDEDGDGDVEMS 444
Score = 26.6 bits (59), Expect = 8.4
Identities = 5/37 (13%), Positives = 17/37 (45%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
D + + D+D++ +++D + ++E +
Sbjct: 435 EDGDGDVEMSAVDNDEEKEEEDKEAIPSTILEEEPTV 471
Score = 26.6 bits (59), Expect = 8.6
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
D+ + D ++DD+D++D+D D D + +
Sbjct: 416 DESVEEISDAEEDDEDEEDEDGDGDVEMSAVDN 448
>gnl|CDD|217373 pfam03115, Astro_capsid, Astrovirus capsid protein precursor. This
product is encoded by astrovirus ORF2, one of the three
astrovirus ORFs (1a, 1b, 2). The 87kD precursor protein
undergoes an intracellular cleavage to form a 79kD
protein. Subsequently, extracellular trypsin cleavage
yields the three proteins forming the infectious virion.
Length = 787
Score = 32.5 bits (74), Expect = 0.082
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDD-------DDDDDDDEVIITCKTLISRLTTQ 58
+D + ++ D +D+ +D+DD+ D + +D+ TL+S L Q
Sbjct: 666 YEDLISLEETDTEDESTEDEDDELDRFDLHDSSGSEPEDDDENNRVTLLSTLINQ 720
Score = 27.4 bits (61), Expect = 4.5
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
+ D +D ++ D +D+ +D+DDE+
Sbjct: 657 RAVEDAPDPYEDLISLEETDTEDESTEDEDDEL 689
>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional.
Length = 487
Score = 32.0 bits (73), Expect = 0.11
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDD 30
G+ M ++ D++DDDDDD+
Sbjct: 456 GGKLEMPGSESVSDEEDDDDDDEVLY 481
Score = 31.6 bits (72), Expect = 0.15
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
M + + + D++DDDDDD+
Sbjct: 449 MEPLFSMGGKLEMPGSESVSDEEDDDDDDEVLY 481
Score = 31.2 bits (71), Expect = 0.23
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
+ + D++DDDDDD+ V +
Sbjct: 451 PLFSMGGKLEMPGSESVSDEEDDDDDDEVLYRRTVSL 487
Score = 30.1 bits (68), Expect = 0.49
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 4 VDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDD 41
++GE + + D++DDDDDD+
Sbjct: 444 IEGEEMEPLFSMGGKLEMPGSESVSDEEDDDDDDEVLY 481
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 32.0 bits (73), Expect = 0.12
Identities = 12/79 (15%), Positives = 38/79 (48%), Gaps = 12/79 (15%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTTQRWL---DVGPSW 67
+++ + ++ ++++ D +++ D++++ +E K + + TT W P W
Sbjct: 37 DEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKV--KETTTEWELLNKTKPIW 94
Query: 68 -------TEDEHKSAHSSM 79
T++E+ + + S+
Sbjct: 95 TRNPKDVTKEEYAAFYKSL 113
>gnl|CDD|220924 pfam10986, DUF2796, Protein of unknown function (DUF2796). This
bacterial family of proteins has no known function.
Length = 161
Score = 31.5 bits (72), Expect = 0.12
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 6/52 (11%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDD-----DDEVIITCKTLISRLTT 57
+++ D D D D D D DD + E TC+ + L+
Sbjct: 74 VSLESSLFGDHDHDHHDHDHHDHHDDHEHAGHSDFHAEYQFTCEN-PAALSE 124
Score = 27.6 bits (62), Expect = 2.0
Identities = 9/30 (30%), Positives = 10/30 (33%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ D D D D D D DD E
Sbjct: 72 TEVSLESSLFGDHDHDHHDHDHHDHHDDHE 101
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 31.6 bits (72), Expect = 0.12
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 8 WWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
W D D D DD DD + D+ + +D+
Sbjct: 86 WKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDK 121
Score = 30.8 bits (70), Expect = 0.22
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
D + D DD DD + D+ + +D +D
Sbjct: 92 KKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLED 124
Score = 29.7 bits (67), Expect = 0.54
Identities = 10/46 (21%), Positives = 21/46 (45%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTTQ 58
+ D D DD DD + D+ + +D +++ + +S L+
Sbjct: 94 KKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTLSEL 139
Score = 28.1 bits (63), Expect = 1.8
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 9 WMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
W + D D D DD DD + D+ +
Sbjct: 84 WKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEA 118
Score = 27.7 bits (62), Expect = 2.7
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 7 EWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDD 40
D D + DD DD + D+ + +D +D
Sbjct: 91 SKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLED 124
Score = 27.0 bits (60), Expect = 4.4
Identities = 7/30 (23%), Positives = 9/30 (30%)
Query: 15 NNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
D D D DD DD + +
Sbjct: 86 WKKKKSKKKKDKDKDKKDDKKDDKSEKKDE 115
Score = 26.6 bits (59), Expect = 6.1
Identities = 9/39 (23%), Positives = 13/39 (33%)
Query: 20 DDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTTQ 58
D D D DD DD + + + + LT
Sbjct: 90 KSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKS 128
>gnl|CDD|226907 COG4530, COG4530, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 129
Score = 31.0 bits (70), Expect = 0.12
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
D DD+D D DDDDDD +D++DDDDD II
Sbjct: 88 DLGDDEDVDLDDDDDDTFLEDEEDDDDDVSGII 120
Score = 29.1 bits (65), Expect = 0.68
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDD 39
+ DD++ D DDDDDD +D++DDDDD
Sbjct: 89 LGDDEDVDLDDDDDDTFLEDEEDDDDDVSG 118
>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit
[Transcription / DNA replication, recombination, and
repair / Chromatin structure and dynamics].
Length = 1001
Score = 32.3 bits (73), Expect = 0.12
Identities = 12/39 (30%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 7 EWWMADDDNNDDDDDDDDDDDDDDD--DDDDDDDDDDDE 43
E+ + DD +D+ D+D++ D+ +D +D+ ++D D+E
Sbjct: 940 EYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEE 978
Score = 31.9 bits (72), Expect = 0.17
Identities = 10/33 (30%), Positives = 22/33 (66%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+D+ +D+ +D +D+ ++D D++D +D DE
Sbjct: 953 DEDEESDESSEDLSEDESENDSSDEEDGEDWDE 985
Score = 30.8 bits (69), Expect = 0.37
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 5 DGEW--WMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DG W M D+ D+ +++ + + DD+ D+ D+D+E
Sbjct: 917 DGGWSFLMVGSDDESDESEEEVSEYEASSDDESDETDEDEE 957
Score = 30.0 bits (67), Expect = 0.72
Identities = 10/39 (25%), Positives = 25/39 (64%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ E +++ + + DD+ D+ D+D++ D+ +D +D+ E
Sbjct: 933 ESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESE 971
Score = 29.6 bits (66), Expect = 0.95
Identities = 8/30 (26%), Positives = 20/30 (66%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D D+D++ D+ +D +D+ ++D D+++
Sbjct: 950 DETDEDEESDESSEDLSEDESENDSSDEED 979
Score = 28.4 bits (63), Expect = 1.8
Identities = 8/30 (26%), Positives = 21/30 (70%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
D+ ++D++ D+ +D +D+ ++D D++D
Sbjct: 950 DETDEDEESDESSEDLSEDESENDSSDEED 979
Score = 28.1 bits (62), Expect = 2.5
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDD 41
D+D D+ +D +D+ ++D D++D +D
Sbjct: 952 TDEDEESDESSEDLSEDESENDSSDEEDGED 982
>gnl|CDD|236544 PRK09506, mrcB, bifunctional glycosyl transferase/transpeptidase;
Reviewed.
Length = 830
Score = 32.0 bits (73), Expect = 0.13
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 27 DDDDDDDDDDDDDDDDEVIITCKTLISR-LTTQRWL 61
DDDD DD DD +D++ + K + + WL
Sbjct: 29 RDDDDYDDYDDYEDEEPMPRKGKGKGRKPRGKRGWL 64
Score = 31.3 bits (71), Expect = 0.21
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 17 DDDDDDDDDDDDDDDD 32
DDDD DD DD +D++
Sbjct: 29 RDDDDYDDYDDYEDEE 44
Score = 31.3 bits (71), Expect = 0.21
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 18 DDDDDDDDDDDDDDDD 33
DDDD DD DD +D++
Sbjct: 29 RDDDDYDDYDDYEDEE 44
Score = 31.3 bits (71), Expect = 0.21
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 19 DDDDDDDDDDDDDDDD 34
DDDD DD DD +D++
Sbjct: 29 RDDDDYDDYDDYEDEE 44
Score = 31.3 bits (71), Expect = 0.21
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 20 DDDDDDDDDDDDDDDD 35
DDDD DD DD +D++
Sbjct: 29 RDDDDYDDYDDYEDEE 44
Score = 31.3 bits (71), Expect = 0.21
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 21 DDDDDDDDDDDDDDDD 36
DDDD DD DD +D++
Sbjct: 29 RDDDDYDDYDDYEDEE 44
Score = 31.3 bits (71), Expect = 0.21
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 22 DDDDDDDDDDDDDDDD 37
DDDD DD DD +D++
Sbjct: 29 RDDDDYDDYDDYEDEE 44
Score = 31.3 bits (71), Expect = 0.21
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 23 DDDDDDDDDDDDDDDD 38
DDDD DD DD +D++
Sbjct: 29 RDDDDYDDYDDYEDEE 44
Score = 31.3 bits (71), Expect = 0.21
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 24 DDDDDDDDDDDDDDDD 39
DDDD DD DD +D++
Sbjct: 29 RDDDDYDDYDDYEDEE 44
Score = 31.3 bits (71), Expect = 0.21
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 25 DDDDDDDDDDDDDDDD 40
DDDD DD DD +D++
Sbjct: 29 RDDDDYDDYDDYEDEE 44
Score = 31.3 bits (71), Expect = 0.21
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 26 DDDDDDDDDDDDDDDD 41
DDDD DD DD +D++
Sbjct: 29 RDDDDYDDYDDYEDEE 44
Score = 27.8 bits (62), Expect = 2.9
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 12 DDDNNDDDDDDDDDD 26
DDD+ DD DD +D++
Sbjct: 30 DDDDYDDYDDYEDEE 44
Score = 27.4 bits (61), Expect = 4.0
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 13 DDNNDDDDDDDDDDDD 28
D++D DD DD +D++
Sbjct: 29 RDDDDYDDYDDYEDEE 44
Score = 27.4 bits (61), Expect = 4.2
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 14 DNNDDDDDDDDDDDDD 29
++DD DD DD +D++
Sbjct: 29 RDDDDYDDYDDYEDEE 44
Score = 27.4 bits (61), Expect = 4.5
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 12 DDDNNDDDDDDDDDDD 27
DD++ DD DD +D++
Sbjct: 29 RDDDDYDDYDDYEDEE 44
>gnl|CDD|220135 pfam09184, PPP4R2, PPP4R2. PPP4R2 (protein phosphatase 4 core
regulatory subunit R2) is the regulatory subunit of the
histone H2A phosphatase complex. It has been shown to
confer resistance to the anticancer drug cisplatin in
yeast, and may confer resistance in higher eukaryotes.
Length = 285
Score = 31.3 bits (71), Expect = 0.17
Identities = 8/32 (25%), Positives = 21/32 (65%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
+ +DD++DDD D D ++ + +D+++++
Sbjct: 244 NKKSDDEEDDDQDGDYVEEKELKEDEEEEETE 275
Score = 30.6 bits (69), Expect = 0.32
Identities = 7/32 (21%), Positives = 24/32 (75%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DDD + D ++ + +D+++++ +++++++DE
Sbjct: 252 DDDQDGDYVEEKELKEDEEEEETEEEEEEEDE 283
Score = 30.2 bits (68), Expect = 0.43
Identities = 8/34 (23%), Positives = 24/34 (70%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
+DD+ +DD D D ++ + +D+++++ ++++E
Sbjct: 247 SDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEE 280
Score = 30.2 bits (68), Expect = 0.46
Identities = 5/32 (15%), Positives = 24/32 (75%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+DD+ D D ++ + +D+++++ ++++++++
Sbjct: 251 EDDDQDGDYVEEKELKEDEEEEETEEEEEEED 282
Score = 29.0 bits (65), Expect = 0.92
Identities = 5/30 (16%), Positives = 23/30 (76%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDD 41
D D ++ + +D+++++ +++++++D+D+
Sbjct: 256 DGDYVEEKELKEDEEEEETEEEEEEEDEDE 285
>gnl|CDD|215971 pfam00524, PPV_E1_N, E1 Protein, N terminal domain.
Length = 131
Score = 30.7 bits (70), Expect = 0.17
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DDN +D+D+D D D D DD D E
Sbjct: 25 SDDNISEDEDEDLFDTGSDLSDFIDDADVIAE 56
Score = 29.9 bits (68), Expect = 0.26
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
DD+ +D+D+D D D D DD +I
Sbjct: 25 SDDNISEDEDEDLFDTGSDLSDFIDDADVI 54
Score = 29.9 bits (68), Expect = 0.28
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 6 GEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
G W+ + +DD+ +D+D+D D D D DD +VI
Sbjct: 15 GGWFFVEAICSDDNISEDEDEDLFDTGSDLSDFIDDADVI 54
Score = 29.2 bits (66), Expect = 0.49
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DD+ ++D+D+D D D D DD D ++
Sbjct: 26 DDNISEDEDEDLFDTGSDLSDFIDDADVIAEQ 57
Score = 26.9 bits (60), Expect = 3.2
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
D+ + D+D+D D D D DD D +
Sbjct: 27 DNISEDEDEDLFDTGSDLSDFIDDADVIAEQGN 59
>gnl|CDD|214396 CHL00206, ycf2, Ycf2; Provisional.
Length = 2281
Score = 31.8 bits (72), Expect = 0.17
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIIT 47
D+ DD D DD DD DD DD D D D ++T
Sbjct: 1668 DNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLT 1703
Score = 30.3 bits (68), Expect = 0.50
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 20 DDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTTQ 58
DD D DD DD DD DD D D D E++ L + +
Sbjct: 1677 DDIDIDDSDDIDDSDDIDRDLDTELLTMMNALTMDMMPK 1715
Score = 27.6 bits (61), Expect = 4.2
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 9 WMADDDNNDDDDDDDDDDDDDDDDDDD 35
++ DD + DD DD DD DD D D D +
Sbjct: 1674 FLIDDIDIDDSDDIDDSDDIDRDLDTE 1700
>gnl|CDD|235648 PRK05932, PRK05932, RNA polymerase factor sigma-54; Reviewed.
Length = 455
Score = 31.7 bits (73), Expect = 0.17
Identities = 8/48 (16%), Positives = 14/48 (29%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTTQ 58
+ + D+ D DD+ T ++L L Q
Sbjct: 63 EELPLDTSWDEIYTAGSPSGSGGDYIDDELPVYQGETTESLQDHLLEQ 110
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 31.5 bits (71), Expect = 0.17
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 20 DDDDDDDDDDDDDDDDDDDDDDDEVIITCK 49
D DD D DD DD D D +D ++T K
Sbjct: 350 GLDKDDSDSGDDSDDSDIDGEDSVSLVTAK 379
Score = 31.5 bits (71), Expect = 0.20
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDD 38
N D DD D DD DD D D +D
Sbjct: 349 NGLDKDDSDSGDDSDDSDIDGED 371
Score = 30.7 bits (69), Expect = 0.34
Identities = 15/46 (32%), Positives = 19/46 (41%)
Query: 21 DDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTTQRWLDVGPS 66
D DD D DD DD D D +D V + + +D PS
Sbjct: 350 GLDKDDSDSGDDSDDSDIDGEDSVSLVTAKKQKEPKKEEPVDSNPS 395
Score = 30.7 bits (69), Expect = 0.39
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDD 39
+ D DD D DD DD D D +D
Sbjct: 344 LKGKKNGLDKDDSDSGDDSDDSDIDGED 371
Score = 29.9 bits (67), Expect = 0.59
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 19 DDDDDDDDDDDDDDDDDDDDDD 40
D DD D DD DD D D +D
Sbjct: 350 GLDKDDSDSGDDSDDSDIDGED 371
Score = 29.2 bits (65), Expect = 0.97
Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 25/70 (35%)
Query: 3 MVDGEWWMADDDNNDDDDDDD-------------------------DDDDDDDDDDDDDD 37
+ + D+ + +D D+ DDD D+ D DD
Sbjct: 218 LEGDDEDDGDESDKGGEDGDEEKSKKKKKKLAKNKKKLDDDKKGKRGGDDDADEYDSDDG 277
Query: 38 DDDDDEVIIT 47
DD+ E
Sbjct: 278 DDEGREEDYI 287
Score = 28.4 bits (63), Expect = 1.8
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDD 33
D +D D DD DD D D +D
Sbjct: 349 NGLDKDDSDSGDDSDDSDIDGED 371
Score = 28.0 bits (62), Expect = 2.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 22 DDDDDDDDDDDDDDDDDDDDDEV 44
D + DD+DD D+ D +D DE
Sbjct: 217 DLEGDDEDDGDESDKGGEDGDEE 239
Score = 28.0 bits (62), Expect = 2.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DDD D+ D DD DD+ ++D D
Sbjct: 265 GDDDADEYDSDDGDDEGREEDYISDSS 291
Score = 27.2 bits (60), Expect = 4.8
Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 8/35 (22%)
Query: 17 DDDDDDDDDDDDDDDD--------DDDDDDDDDDE 43
DDD D+ D DD DD D +D E
Sbjct: 264 GGDDDADEYDSDDGDDEGREEDYISDSSASGNDPE 298
Score = 26.8 bits (59), Expect = 7.2
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
DDD D+ D DD DD+ ++D D
Sbjct: 266 DDDADEYDSDDGDDEGREEDYISDSSAS 293
Score = 26.8 bits (59), Expect = 7.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DDD ++ D DD DD+ ++D D +D
Sbjct: 266 DDDADEYDSDDGDDEGREEDYISDSSASGNDP 297
Score = 26.5 bits (58), Expect = 7.4
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DD+ D+ D DD DD+ ++D D ++
Sbjct: 265 GDDDADEYDSDDGDDEGREEDYISDSSASGND 296
Score = 26.5 bits (58), Expect = 7.8
Identities = 13/41 (31%), Positives = 14/41 (34%), Gaps = 8/41 (19%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDD--------DDDDDDDE 43
DDD DDD D+ D DD DD D
Sbjct: 255 LDDDKKGKRGGDDDADEYDSDDGDDEGREEDYISDSSASGN 295
Score = 26.5 bits (58), Expect = 7.9
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 26/58 (44%)
Query: 12 DDDNNDDDDDDDDDD--------------------------DDDDDDDDDDDDDDDDE 43
+ + ++D ++ +++ DD D DD DD D D E
Sbjct: 313 EIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSDSGDDSDDSDIDGE 370
Score = 26.5 bits (58), Expect = 8.6
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D + DD+DD D+ D +D D++ +
Sbjct: 217 DLEGDDEDDGDESDKGGEDGDEEKSKK 243
>gnl|CDD|222800 PHA00458, PHA00458, single-stranded DNA-binding protein.
Length = 233
Score = 31.3 bits (71), Expect = 0.18
Identities = 8/37 (21%), Positives = 23/37 (62%)
Query: 4 VDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDD 40
+ + ++A + D+++ D+DD+++ ++D+D D
Sbjct: 196 DEEDGYVASEAKARKPQDEEEWDEDDEEESEEDEDGD 232
Score = 30.5 bits (69), Expect = 0.33
Identities = 11/43 (25%), Positives = 25/43 (58%), Gaps = 11/43 (25%)
Query: 12 DDDNNDDDDDD-----------DDDDDDDDDDDDDDDDDDDDE 43
+DD D+D++D D+++ D+DD+++ ++D+D
Sbjct: 189 EDDWADEDEEDGYVASEAKARKPQDEEEWDEDDEEESEEDEDG 231
Score = 30.1 bits (68), Expect = 0.40
Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 10/46 (21%)
Query: 5 DGEWWMADDDNND--------DDDDDDDDDDDDDDDDDDDDDDDDD 42
+ +W AD+D D D+++ D+DD+++ ++D+D D
Sbjct: 189 EDDW--ADEDEEDGYVASEAKARKPQDEEEWDEDDEEESEEDEDGD 232
Score = 26.7 bits (59), Expect = 5.9
Identities = 10/45 (22%), Positives = 24/45 (53%), Gaps = 8/45 (17%)
Query: 7 EWWMADDDNNDDDDDDD--------DDDDDDDDDDDDDDDDDDDE 43
E+ +D+ D+D++D D+++ D+DD+++ +E
Sbjct: 183 EFGGGGEDDWADEDEEDGYVASEAKARKPQDEEEWDEDDEEESEE 227
>gnl|CDD|233222 TIGR00986, 3a0801s05tom22, mitochondrial import receptor subunit
Tom22. The mitochondrial protein translocase (MPT)
family, which brings nuclearly encoded preproteins into
mitochondria, is very complex with 19 currently
identified protein constituents.These proteins include
several chaperone proteins, four proteins of the outer
membrane translocase (Tom) import receptor, five
proteins of the Tom channel complex, five proteins of
the inner membrane translocase (Tim) and three "motor"
proteins. This family is specific for the Tom22
proteins [Transport and binding proteins, Amino acids,
peptides and amines].
Length = 145
Score = 30.7 bits (69), Expect = 0.18
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 18 DDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
++DD+D D D +D D D + ++E
Sbjct: 24 EEDDEDFTDVDSEDSVDSDFESLEEETFT 52
Score = 28.0 bits (62), Expect = 1.5
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDD 35
DD++ D D +D D D + +++
Sbjct: 25 EDDEDFTDVDSEDSVDSDFESLEEE 49
Score = 26.1 bits (57), Expect = 6.4
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTTQRWLDVGPSWTEDEHK 73
+ +D+D D D +D D D + +++ + I K ++ TT+ W+ S T + K
Sbjct: 24 EEDDEDFTDVDSEDSVDSDFESLEEETFTDRIYALKDIVP-PTTRGWIYHKYSTTTNFVK 82
Query: 74 SAHS 77
S S
Sbjct: 83 STLS 86
>gnl|CDD|131353 TIGR02300, FYDLN_acid, TIGR02300 family protein. Members of this
family are bacterial proteins with a conserved motif
[KR]FYDLN, sometimes flanked by a pair of CXXC motifs,
followed by a long region of low complexity sequence in
which roughly half the residues are Asp and Glu,
including multiple runs of five or more acidic residues.
The function of members of this family is unknown.
Length = 129
Score = 30.3 bits (68), Expect = 0.21
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
DD +D+D DDDDD +D++DDD DD+++I
Sbjct: 92 DDLAEDEDIADDDDDVTFLEDEEDDDIDDEDII 124
Score = 30.3 bits (68), Expect = 0.24
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
DD D+D DDDDD +D++DDD DD+D
Sbjct: 92 DDLAEDEDIADDDDDVTFLEDEEDDDIDDED 122
Score = 29.2 bits (65), Expect = 0.55
Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDD----DDDDDDDDDDEVII 46
A DD +D+D DDDDD +D++DDD DDE II
Sbjct: 85 APTPAGGDDLAEDEDIADDDDDVTFLEDEEDDDIDDEDII 124
>gnl|CDD|235052 PRK02597, rpoC2, DNA-directed RNA polymerase subunit beta';
Provisional.
Length = 1331
Score = 31.5 bits (72), Expect = 0.22
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDD 41
D D+ DD D + ++ D+
Sbjct: 1300 RPDADDELLIDDQLPDPAALEGLQEEGLLSDE 1331
Score = 31.1 bits (71), Expect = 0.28
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 3/37 (8%)
Query: 10 MADDDNNDDDDD---DDDDDDDDDDDDDDDDDDDDDE 43
A D DD+ DD D + ++ DE
Sbjct: 1295 FAAFARPDADDELLIDDQLPDPAALEGLQEEGLLSDE 1331
>gnl|CDD|234340 TIGR03744, traC_PFL_4706, conjugative transfer ATPase, PFL_4706
family. Members of this protein family are predicted
ATP-binding proteins apparently associated with DNA
conjugal transfer. Members are found both in plasmids
and in bacterial chromosomal regions that appear to
derive from integrative elements such as conjugative
transposons. More distant homologs, outside the scope of
this family, include type IV secretion/conjugal transfer
proteins such as TraC, VirB4 and TrsE. The granularity
of this protein family definition is chosen so as to
represent one distinctive clade and act as a marker
through which to define and recognize the class of
mobile element it serves [Mobile and extrachromosomal
element functions, Plasmid functions].
Length = 893
Score = 31.2 bits (71), Expect = 0.25
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDD--DEVIITCKTLIS 53
+D D D+ +++D DD+D DD+D++ D E+ I + +I+
Sbjct: 555 TPEDVKALDADELEEEDADDEDPDDEDEEQRDILGEMEIAARLMIT 600
Score = 28.9 bits (65), Expect = 1.4
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 7 EWWMADDDNNDDDDDDDDDDDDDDDDDDD 35
+ D D +++D DD+D DD+D++ D
Sbjct: 558 DVKALDADELEEEDADDEDPDDEDEEQRD 586
Score = 27.7 bits (62), Expect = 3.1
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 3 MVDGEWWMADDDNNDDDDDDDDDDDDDDDDDD 34
+ + D+ ++D DD+D DD+D++ D
Sbjct: 555 TPEDVKALDADELEEEDADDEDPDDEDEEQRD 586
>gnl|CDD|235636 PRK05886, yajC, preprotein translocase subunit YajC; Validated.
Length = 109
Score = 29.8 bits (67), Expect = 0.29
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 9 WM--ADDDNNDDDDDDDDDDDDDDDDDDDDDDDD 40
WM A D DD+DD++ + D D D DD +
Sbjct: 75 WMKLAVRDRILPDDEDDEELNADLDKDVDDVAGE 108
Score = 27.9 bits (62), Expect = 1.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D DD+DD++ + D D D DD E
Sbjct: 82 DRILPDDEDDEELNADLDKDVDDVAGE 108
Score = 27.5 bits (61), Expect = 1.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 21 DDDDDDDDDDDDDDDDDDDDDDEVI 45
D DD+DD++ + D D D D+V
Sbjct: 82 DRILPDDEDDEELNADLDKDVDDVA 106
>gnl|CDD|235030 PRK02315, PRK02315, adaptor protein; Provisional.
Length = 233
Score = 30.6 bits (70), Expect = 0.30
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
D + D+D +D +D + +D D++
Sbjct: 88 DLIDLPSDEDIEDLFPEDFFKLLEQSLEDKDDL 120
Score = 30.2 bits (69), Expect = 0.42
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D N +D D D+D +D +D ++
Sbjct: 81 DLPLNFEDLIDLPSDEDIEDLFPEDFFKLLEQ 112
Score = 29.0 bits (66), Expect = 0.82
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D + +D D D+D +D +D E
Sbjct: 80 LDLPLNFEDLIDLPSDEDIEDLFPEDFFKLLE 111
Score = 28.7 bits (65), Expect = 1.1
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
+ D + +D D D+D +D +D
Sbjct: 78 SKLDLPLNFEDLIDLPSDEDIEDLFPEDFFKL 109
Score = 28.3 bits (64), Expect = 1.5
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
D D+D +D +D + +D DD
Sbjct: 89 LIDLPSDEDIEDLFPEDFFKLLEQSLEDKDDLDA 122
Score = 28.3 bits (64), Expect = 1.7
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+D + D+D +D +D + +D +
Sbjct: 87 EDLIDLPSDEDIEDLFPEDFFKLLEQSLEDKD 118
Score = 28.3 bits (64), Expect = 1.8
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 15 NNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D + +D D D+D +D +D
Sbjct: 79 KLDLPLNFEDLIDLPSDEDIEDLFPEDFF 107
Score = 28.3 bits (64), Expect = 1.8
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ + +D D D+D +D +D +
Sbjct: 79 KLDLPLNFEDLIDLPSDEDIEDLFPEDFFK 108
Score = 27.9 bits (63), Expect = 2.0
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ + +D D D+D +D +D
Sbjct: 79 KLDLPLNFEDLIDLPSDEDIEDLFPEDFFKL 109
Score = 27.1 bits (61), Expect = 3.7
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
+ D + +D D D+D +D ++
Sbjct: 78 SKLDLPLNFEDLIDLPSDEDIEDLFPEDF 106
Score = 27.1 bits (61), Expect = 3.8
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D +++D +D +D + +D DD D
Sbjct: 90 IDLPSDEDIEDLFPEDFFKLLEQSLEDKDDLDA 122
Score = 26.7 bits (60), Expect = 5.8
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDD 41
+D+D D +D + +D DD D
Sbjct: 93 PSDEDIEDLFPEDFFKLLEQSLEDKDDLDATA 124
Score = 26.4 bits (59), Expect = 6.7
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+D + +D + +D DD D E
Sbjct: 96 EDIEDLFPEDFFKLLEQSLEDKDDLDATAKQE 127
>gnl|CDD|218747 pfam05786, Cnd2, Condensin complex subunit 2. This family consists
of several Barren protein homologues from several
eukaryotic organisms. In Drosophila Barren (barr) is
required for sister-chromatid segregation in mitosis.
barr encodes a novel protein that is present in
proliferating cells and has homologues in yeast and
human. Mitotic defects in barr embryos become apparent
during cycle 16, resulting in a loss of PNS and CNS
neurons. Centromeres move apart at the
metaphase-anaphase transition and Cyclin B is degraded,
but sister chromatids remain connected, resulting in
chromatin bridging. Barren protein localises to
chromatin throughout mitosis. Colocalisation and
biochemical experiments indicate that Barren associates
with Topoisomerase II throughout mitosis and alters the
activity of Topoisomerase II. It has been suggested that
this association is required for proper chromosomal
segregation by facilitating the decatenation of
chromatids at anaphase. This family forms one of the
three non-structural maintenance of chromosomes (SMC)
subunits of the mitotic condensation complex along with
Cnd1 and Cnd3.
Length = 719
Score = 30.9 bits (70), Expect = 0.31
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+AD DN + + + DD +DDD++ D ++D
Sbjct: 149 LADSDNKEAPETGREGDDGEDDDEEGSDGEEDGA 182
Score = 30.5 bits (69), Expect = 0.38
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 5/38 (13%)
Query: 12 DDDNNDDDDDDDDDDDDD-----DDDDDDDDDDDDDEV 44
++D +DD+ DD DD+D D + + +DD D+D
Sbjct: 320 NEDESDDNADDFDDNDKKGDVGFDINAEVEDDPDEDAE 357
Score = 28.2 bits (63), Expect = 2.1
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 13 DDNNDDDDDDDDD-----DDDDDDDDDDDDDDDDDEV 44
DDN DD DD+D D + + +DD D+D +D
Sbjct: 325 DDNADDFDDNDKKGDVGFDINAEVEDDPDEDAEDGGD 361
Score = 27.8 bits (62), Expect = 2.8
Identities = 13/35 (37%), Positives = 15/35 (42%)
Query: 9 WMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
ADDD N D DDDDD DD + +
Sbjct: 543 NFADDDPNFCPVGQGADGDDDDDGPFDDAAEMLSD 577
Score = 27.8 bits (62), Expect = 3.1
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Query: 9 WMADDDNNDDDDDDDDDDDDDDD------DDDDDDDDDDDEVII 46
D +N D+ DD+ DD DD+D D + + +DD DE
Sbjct: 314 APEDTENEDESDDNADDFDDNDKKGDVGFDINAEVEDDPDEDAE 357
Score = 27.8 bits (62), Expect = 3.3
Identities = 12/37 (32%), Positives = 14/37 (37%)
Query: 7 EWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ DD N D DDDDD DD + D
Sbjct: 542 PNFADDDPNFCPVGQGADGDDDDDGPFDDAAEMLSDP 578
>gnl|CDD|218673 pfam05642, Sporozoite_P67, Sporozoite P67 surface antigen. This
family consists of several Theileria P67 surface
antigens. A stage specific surface antigen of Theileria
parva, p67, is the basis for the development of an
anti-sporozoite vaccine for the control of East Coast
fever (ECF) in cattle. The antigen has been shown to
contain five distinct linear peptide sequences
recognised by sporozoite-neutralising murine monoclonal
antibodies.
Length = 727
Score = 30.8 bits (69), Expect = 0.31
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDD 38
+ + N D D ++DDDD +++D+
Sbjct: 102 NTEQNQDTKGSKTDSEEDDDDSEEEDN 128
Score = 30.8 bits (69), Expect = 0.33
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDD 41
DN + + D D ++DDDD +++D+
Sbjct: 100 QDNTEQNQDTKGSKTDSEEDDDDSEEEDN 128
Score = 30.0 bits (67), Expect = 0.52
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDD 40
D+ + D D ++DDDD +++D+
Sbjct: 100 QDNTEQNQDTKGSKTDSEEDDDDSEEEDN 128
Score = 30.0 bits (67), Expect = 0.53
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 4 VDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDD 39
V E + D+ + D D ++DDDD +++D+
Sbjct: 93 VSQESEVQDNTEQNQDTKGSKTDSEEDDDDSEEEDN 128
Score = 30.0 bits (67), Expect = 0.54
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
N + + D D ++DDDD +++D++
Sbjct: 102 NTEQNQDTKGSKTDSEEDDDDSEEEDNK 129
Score = 28.9 bits (64), Expect = 1.3
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D D ++DDDD +++D+ D
Sbjct: 105 QNQDTKGSKTDSEEDDDDSEEEDNKSTSSKDGKG 138
Score = 27.7 bits (61), Expect = 3.6
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D+ + + D D ++DDDD ++E
Sbjct: 100 QDNTEQNQDTKGSKTDSEEDDDDSEEE 126
>gnl|CDD|237549 PRK13897, PRK13897, type IV secretion system component VirD4;
Provisional.
Length = 606
Score = 30.5 bits (69), Expect = 0.35
Identities = 8/26 (30%), Positives = 18/26 (69%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDD 36
A ++ +++++D++DDD+DDD
Sbjct: 581 ASEETETITVPENNEEDEEDDDEDDD 606
Score = 29.0 bits (65), Expect = 1.3
Identities = 8/32 (25%), Positives = 22/32 (68%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+NN+ ++ + +++++D++DDD+DD+
Sbjct: 575 RANNNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 27.5 bits (61), Expect = 3.7
Identities = 7/26 (26%), Positives = 18/26 (69%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDD 35
+++ +++++D++DDD+DDD
Sbjct: 581 ASEETETITVPENNEEDEEDDDEDDD 606
>gnl|CDD|221323 pfam11931, DUF3449, Domain of unknown function (DUF3449). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 181 to 207 amino acids in length. This domain
has two conserved sequence motifs: PIP and CEICG. The
domain carries a zinc-finger domain of the C2H2-type.
Length = 187
Score = 30.3 bits (69), Expect = 0.36
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 19 DDDDDDDDDDDDDDDDDDDDDDDDEVI 45
D+ +D +D DDD DDD++E I
Sbjct: 38 ASADESSEDASEDGSDDDSDDDEEEPI 64
Score = 29.5 bits (67), Expect = 0.52
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
+ +++ D+ +D +D DDD DDD+++
Sbjct: 31 LTEEERQASADESSEDASEDGSDDDSDDDEEEP 63
Score = 29.5 bits (67), Expect = 0.60
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
D+ +D +D DDD DDD+++ +
Sbjct: 36 RQASADESSEDASEDGSDDDSDDDEEEPI 64
Score = 29.5 bits (67), Expect = 0.63
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 20 DDDDDDDDDDDDDDDDDDDDDDDEVII 46
D+ +D +D DDD DDD+E I
Sbjct: 38 ASADESSEDASEDGSDDDSDDDEEEPI 64
>gnl|CDD|217509 pfam03353, Lin-8, Ras-mediated vulval-induction antagonist. LIN-8
is a nuclear protein, present at the sites of
transcriptional repressor complexes, which interacts
with LIN-35 Rb.Lin35 Rb is a product of the class B
synMuv gene lin-35 which silences genes required for
vulval specification through chromatin modification and
remodelling. The biological role of the interaction has
not yet been determined however predictions have been
made. The interaction shows that class A synMuv genes
control vulval induction through the transcriptional
regulation of gene expression. LIN-8 normally functions
as part of a protein complex however when the complex is
absent, other family members can partially replace LIN-8
activity.
Length = 316
Score = 30.4 bits (69), Expect = 0.38
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 6 GEWWMADDDNNDDDDD---DDDDDDDDDDDDDDDDDDDDDEVII 46
E W +D DD+DD D +D + D +++D+ DEV +
Sbjct: 128 KEPWTGEDQEADDEDDIIYDGIFEDRTRESQDMEENDEVDEVEV 171
>gnl|CDD|221753 pfam12753, Nro1, Nuclear pore complex subunit Nro1. In fission
yeast, this protein is a positive regulator of the
stability of Sre1N, the sterol regulatory
element-binding protein which is an ER membrane-bound
transcription factor that controls adaptation to low
oxygen-growth. In addition, the fission yeast Nro1 is a
direct inhibitor of a protein that inhibits SreN1
degradation, Ofd1 (an oxoglutamate deoxygenase). The
outcome of this reactivity is that Ofd1 acts as an
oxygen sensor that regulates the binding of Nro1 to Ofd1
to control the stability of Sre1N. Solution of the
structure of Nro1 reveals it to be made up of a number
of TPR coils.
Length = 401
Score = 30.6 bits (69), Expect = 0.38
Identities = 5/24 (20%), Positives = 17/24 (70%)
Query: 21 DDDDDDDDDDDDDDDDDDDDDDEV 44
++ +++ D+ D D++++++EV
Sbjct: 216 ENFGKENEIDEGLDSDEEEEEEEV 239
Score = 29.8 bits (67), Expect = 0.57
Identities = 6/30 (20%), Positives = 19/30 (63%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
DD D ++ +++ D+ D D+++++++
Sbjct: 209 DDLLDIVENFGKENEIDEGLDSDEEEEEEE 238
Score = 29.1 bits (65), Expect = 1.0
Identities = 6/32 (18%), Positives = 18/32 (56%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDDDDEVIIT 47
+D D ++ +++ D+ D D++++E +
Sbjct: 209 DDLLDIVENFGKENEIDEGLDSDEEEEEEEVE 240
Score = 28.3 bits (63), Expect = 2.0
Identities = 6/34 (17%), Positives = 20/34 (58%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DD + ++ +++ D+ D D+++++++ E
Sbjct: 207 ALDDLLDIVENFGKENEIDEGLDSDEEEEEEEVE 240
>gnl|CDD|165245 PHA02934, PHA02934, Hypothetical protein; Provisional.
Length = 253
Score = 30.4 bits (68), Expect = 0.39
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
DD +D DD DD DD DD DD D+ D D+ V
Sbjct: 19 DDIDDIDDIDDIDDIDDIDDIDNVQDIDNGIV 50
Score = 28.1 bits (62), Expect = 2.2
Identities = 17/41 (41%), Positives = 22/41 (53%)
Query: 1 MMMVDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDD 41
M M + DD ++ DD DD DD DD DD D+ D D+
Sbjct: 8 MFMCNNIVDYVDDIDDIDDIDDIDDIDDIDDIDNVQDIDNG 48
Score = 26.1 bits (57), Expect = 8.4
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DD ++ DD DD DD D+ D D+ D +DE
Sbjct: 25 DDIDDIDDIDDIDDIDNVQDIDNGIVQDIEDE 56
>gnl|CDD|227466 COG5137, COG5137, Histone chaperone involved in gene silencing
[Transcription / Chromatin structure and dynamics].
Length = 279
Score = 30.3 bits (68), Expect = 0.41
Identities = 6/32 (18%), Positives = 19/32 (59%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
D +N++++ ++ D ++++D++ D E
Sbjct: 173 DVDNEEEERLEESDGREEEEDEEVGSDSYGEG 204
Score = 30.3 bits (68), Expect = 0.41
Identities = 4/33 (12%), Positives = 17/33 (51%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D++ + ++ D ++++D++ D + +
Sbjct: 174 VDNEEEERLEESDGREEEEDEEVGSDSYGEGNR 206
Score = 28.8 bits (64), Expect = 1.1
Identities = 6/29 (20%), Positives = 17/29 (58%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDD 40
D DN +++ ++ D ++++D++ D
Sbjct: 173 DVDNEEEERLEESDGREEEEDEEVGSDSY 201
Score = 28.0 bits (62), Expect = 2.1
Identities = 5/32 (15%), Positives = 19/32 (59%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
A D ++++++ ++ D ++++D++ D
Sbjct: 170 AQPDVDNEEEERLEESDGREEEEDEEVGSDSY 201
Score = 28.0 bits (62), Expect = 2.4
Identities = 4/32 (12%), Positives = 17/32 (53%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+++ ++ D ++++D++ D + + E
Sbjct: 176 NEEEERLEESDGREEEEDEEVGSDSYGEGNRE 207
Score = 27.7 bits (61), Expect = 3.2
Identities = 10/39 (25%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 9 WMADDDNND---DDDDDDDDDDDDDDDDDDDDDDDDDEV 44
W D+DN++ D D+++++ ++ D ++++D+EV
Sbjct: 158 WDNDEDNDEAPPAQPDVDNEEEERLEESDGREEEEDEEV 196
Score = 26.5 bits (58), Expect = 8.0
Identities = 4/33 (12%), Positives = 16/33 (48%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
+ D ++++D++ D + + + ++E
Sbjct: 180 ERLEESDGREEEEDEEVGSDSYGEGNRELNEEE 212
>gnl|CDD|236876 PRK11191, PRK11191, RNase E inhibitor protein; Provisional.
Length = 138
Score = 29.5 bits (67), Expect = 0.44
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 23 DDDDDDDDDDDDDDDDDDDDE 43
D + +D DD+D D+DDD
Sbjct: 117 DPNAEDGDDEDFVDEDDDGVR 137
Score = 29.2 bits (66), Expect = 0.62
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDD 38
D + +D DD+D D+DDD
Sbjct: 117 DPNAEDGDDEDFVDEDDDGVRH 138
Score = 29.2 bits (66), Expect = 0.62
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 18 DDDDDDDDDDDDDDDDDDDDDD 39
D + +D DD+D D+DDD
Sbjct: 117 DPNAEDGDDEDFVDEDDDGVRH 138
Score = 29.2 bits (66), Expect = 0.62
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 19 DDDDDDDDDDDDDDDDDDDDDD 40
D + +D DD+D D+DDD
Sbjct: 117 DPNAEDGDDEDFVDEDDDGVRH 138
Score = 29.2 bits (66), Expect = 0.62
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 20 DDDDDDDDDDDDDDDDDDDDDD 41
D + +D DD+D D+DDD
Sbjct: 117 DPNAEDGDDEDFVDEDDDGVRH 138
Score = 29.2 bits (66), Expect = 0.62
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 21 DDDDDDDDDDDDDDDDDDDDDD 42
D + +D DD+D D+DDD
Sbjct: 117 DPNAEDGDDEDFVDEDDDGVRH 138
Score = 29.2 bits (66), Expect = 0.63
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 25 DDDDDDDDDDDDDDDDDDEV 44
D + +D DD+D D+DDD V
Sbjct: 117 DPNAEDGDDEDFVDEDDDGV 136
Score = 28.8 bits (65), Expect = 0.88
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDD 34
D N +D DD+D D+DDD
Sbjct: 117 DPNAEDGDDEDFVDEDDDGVRH 138
Score = 27.6 bits (62), Expect = 1.7
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDD 35
D N +D DD+D D+DDD
Sbjct: 117 DPNAEDGDDEDFVDEDDDGVRH 138
Score = 27.6 bits (62), Expect = 2.1
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDD 33
D + D DD+D D+DDD
Sbjct: 117 DPNAEDGDDEDFVDEDDDGVRH 138
>gnl|CDD|114045 pfam05297, Herpes_LMP1, Herpesvirus latent membrane protein 1
(LMP1). This family consists of several latent membrane
protein 1 or LMP1s mostly from Epstein-Barr virus. LMP1
of EBV is a 62-65 kDa plasma membrane protein possessing
six membrane spanning regions, a short cytoplasmic
N-terminus and a long cytoplasmic carboxy tail of 200
amino acids. EBV latent membrane protein 1 (LMP1) is
essential for EBV-mediated transformation and has been
associated with several cases of malignancies. EBV-like
viruses in Cynomolgus monkeys (Macaca fascicularis) have
been associated with high lymphoma rates in
immunosuppressed monkeys.
Length = 382
Score = 30.0 bits (67), Expect = 0.50
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDD 41
D DN DD+ D D+ DD+ D D+ DD+
Sbjct: 255 DPDNTDDNGPQDPDNTDDNGPQDPDNTDDN 284
Score = 28.4 bits (63), Expect = 1.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDD 41
D DN DD+ D D+ DD+ D D+ D+
Sbjct: 266 DPDNTDDNGPQDPDNTDDNGPQDPDNTADN 295
Score = 28.1 bits (62), Expect = 2.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
D +N DD+ D D+ DD+ D D+ DD+
Sbjct: 255 DPDNTDDNGPQDPDNTDDNGPQDPDNTDDN 284
Score = 28.1 bits (62), Expect = 2.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDD 41
D DN DD+ D D+ D+ D D+ DD+
Sbjct: 277 DPDNTDDNGPQDPDNTADNGPQDPDNTDDN 306
Score = 27.3 bits (60), Expect = 4.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDD 41
DDN D D+ DD+ D D+ DD+ D
Sbjct: 260 DDNGPQDPDNTDDNGPQDPDNTDDNGPQD 288
Score = 26.9 bits (59), Expect = 5.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
DD+ D D+ DD+ D D+ DD+ D D
Sbjct: 260 DDNGPQDPDNTDDNGPQDPDNTDDNGPQDPD 290
Score = 26.5 bits (58), Expect = 8.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
D +N DD+ D D+ DD+ D D+ D+
Sbjct: 266 DPDNTDDNGPQDPDNTDDNGPQDPDNTADN 295
>gnl|CDD|147601 pfam05505, Ebola_NP, Ebola nucleoprotein. This family consists of
Ebola and Marburg virus nucleoproteins. These proteins
are responsible for encapsidation of genomic RNA. It has
been found that nucleoprotein DNA vaccines can offer
protection from the virus.
Length = 717
Score = 30.3 bits (68), Expect = 0.51
Identities = 13/65 (20%), Positives = 21/65 (32%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTTQRWLDVGPSWTEDE 71
+ D +DD + D+DDDD I + + T R P
Sbjct: 446 GESTEYSSYSDSFVGTNDDLVLFNLDEDDDDSKPIPEQAASTYGQTSRERQGIPEPPPGS 505
Query: 72 HKSAH 76
H+ +
Sbjct: 506 HQPGN 510
Score = 28.0 bits (62), Expect = 3.1
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+D+ D DDDD + DDD D++
Sbjct: 547 EDEPEDQTDDDDSSLPPLESDDDPGSDNEQGV 578
Score = 27.6 bits (61), Expect = 3.9
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIIT 47
++D +D DDDD + DDD D++ V +T
Sbjct: 546 EEDEPEDQTDDDDSSLPPLESDDDPGSDNEQGVDLT 581
>gnl|CDD|220628 pfam10198, Ada3, Histone acetyltransferases subunit 3. Ada3 is a
family of proteins conserved from yeasts to humans. It
is an essential component of the Ada transcriptional
coactivator (alteration/deficiency in activation)
complex. Ada3 plays a key role in linking histone
acetyltransferase-containing complexes to p53 (tumour
suppressor protein) thereby regulating p53 acetylation,
stability and transcriptional activation following DNA
damage.
Length = 127
Score = 29.2 bits (66), Expect = 0.51
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 30 DDDDDDDDDDDDDEVIITCKTLISRLTTQR 59
DDDDD + +DDE++ + L + L
Sbjct: 23 DDDDDWATNREDDEILAELRRLQTELKEVS 52
>gnl|CDD|185638 PTZ00459, PTZ00459, mucin-associated surface protein (MASP);
Provisional.
Length = 291
Score = 30.1 bits (67), Expect = 0.52
Identities = 12/27 (44%), Positives = 21/27 (77%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDE 43
++DD+D DDD ++ DDDD +D+++E
Sbjct: 75 EEDDEDVDDDSEEGDDDDGGAEDEEEE 101
Score = 29.8 bits (66), Expect = 0.65
Identities = 12/28 (42%), Positives = 22/28 (78%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
+DD+D DDD ++ DDDD +D+++++V
Sbjct: 76 EDDEDVDDDSEEGDDDDGGAEDEEEEKV 103
Score = 26.7 bits (58), Expect = 6.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDD 40
A N ++DD+D DDD ++ DDDD
Sbjct: 63 AGAKENSPPLPTEEDDEDVDDDSEEGDDDD 92
Score = 26.3 bits (57), Expect = 8.5
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDD 39
++D+ D DDD ++ DDDD +D++++
Sbjct: 75 EEDDEDVDDDSEEGDDDDGGAEDEEEEK 102
Score = 26.3 bits (57), Expect = 10.0
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDDDDDDDD 41
+ +D+D DDD ++ DDDD +D++++
Sbjct: 75 EEDDEDVDDDSEEGDDDDGGAEDEEEEK 102
>gnl|CDD|222927 PHA02774, PHA02774, E1; Provisional.
Length = 613
Score = 29.9 bits (68), Expect = 0.56
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDD--DDDDDDE 43
W++ + + D +D+ +D D D D DD + +
Sbjct: 13 GSGWFLVEAEAECSDGEDELEDLFDTGSDISDLIDDAEVVQ 53
Score = 29.5 bits (67), Expect = 0.98
Identities = 12/40 (30%), Positives = 17/40 (42%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
G W + + D +D+ +D D D D DD EV
Sbjct: 12 GGSGWFLVEAEAECSDGEDELEDLFDTGSDISDLIDDAEV 51
Score = 29.5 bits (67), Expect = 0.99
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 18 DDDDDDDDDDDDDDDDDDDDD--DDDDEV 44
+ D +D+ +D D D D DD + V
Sbjct: 24 ECSDGEDELEDLFDTGSDISDLIDDAEVV 52
Score = 27.2 bits (61), Expect = 4.5
Identities = 8/42 (19%), Positives = 19/42 (45%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTL 51
MADD D ++ + + + D +D+ +++ T +
Sbjct: 1 MADDKGTDPEEGGSGWFLVEAEAECSDGEDELEDLFDTGSDI 42
>gnl|CDD|185219 PRK15319, PRK15319, AIDA autotransporter-like protein ShdA;
Provisional.
Length = 2039
Score = 30.1 bits (67), Expect = 0.60
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
D +W++A +DDDD DD D DD + DD
Sbjct: 1658 DNDWYLASKAQSDDDDSGGDDTPSDGGDDGGNVTPPDD 1695
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 29.3 bits (66), Expect = 0.64
Identities = 6/33 (18%), Positives = 22/33 (66%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
+ + + +D +D D + +D++ +++++++DE
Sbjct: 69 EKEAANSEDKEDKGDAEKEDEESEEENEEEDEE 101
Score = 28.9 bits (65), Expect = 0.94
Identities = 7/33 (21%), Positives = 24/33 (72%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
A+ ++ +D D + +D++ +++++++D++ DE
Sbjct: 73 ANSEDKEDKGDAEKEDEESEEENEEEDEESSDE 105
Score = 27.8 bits (62), Expect = 2.4
Identities = 7/37 (18%), Positives = 22/37 (59%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIIT 47
+D D D + +D++ +++++++D++ D+ T
Sbjct: 74 NSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKET 110
>gnl|CDD|218881 pfam06070, Herpes_UL32, Herpesvirus large structural phosphoprotein
UL32. The large phosphorylated protein (UL32-like) of
herpes viruses is the polypeptide most frequently
reactive in immuno-blotting analyses with antisera when
compared with other viral proteins.
Length = 777
Score = 29.9 bits (67), Expect = 0.72
Identities = 18/49 (36%), Positives = 23/49 (46%)
Query: 26 DDDDDDDDDDDDDDDDDEVIITCKTLISRLTTQRWLDVGPSWTEDEHKS 74
DD + D+DDDDD D + T K L+ + W D S ED S
Sbjct: 278 DDPGLESTDEDDDDDGDSSLQTFKPLLDLTGSSLWSDDEESGDEDGDGS 326
>gnl|CDD|221586 pfam12457, TIP_N, Tuftelin interacting protein N terminal. This
domain family is found in eukaryotes, and is typically
between 99 and 114 amino acids in length. The family is
found in association with pfam08697, pfam01585. There
are two completely conserved residues (G and F) that may
be functionally important. TIP is involved in enamel
assembly by interacting with one of the major proteins
responsible for biomineralisation of enamel - tuftelin.
Length = 106
Score = 28.5 bits (64), Expect = 0.74
Identities = 12/27 (44%), Positives = 21/27 (77%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDDDD 42
+ ++DD +D+ +DDD+ D+DDD+DD
Sbjct: 80 AKEPEEDDKEDESEDDDESDEDDDEDD 106
Score = 28.1 bits (63), Expect = 0.91
Identities = 11/27 (40%), Positives = 21/27 (77%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ ++DD +D+ +DDD+ D+DDD+D+
Sbjct: 80 AKEPEEDDKEDESEDDDESDEDDDEDD 106
Score = 27.7 bits (62), Expect = 1.5
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDD 38
A + +DD +D+ +DDD+ D+DDD+DD
Sbjct: 78 QAAKEPEEDDKEDESEDDDESDEDDDEDD 106
>gnl|CDD|236946 PRK11649, PRK11649, putative peptidase; Provisional.
Length = 439
Score = 29.6 bits (67), Expect = 0.78
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 18 DDDDDDDDD--DDDDDDDDDDDDDDDDEVIITCKTLISRLT 56
D +D+ D+ DD + + V+ T TL S L
Sbjct: 71 DQAAQEDEAIPQDELDDKIAGEAGVHEYVVSTGDTLSSILN 111
>gnl|CDD|227880 COG5593, COG5593, Nucleic-acid-binding protein possibly involved in
ribosomal biogenesis [Translation, ribosomal structure
and biogenesis].
Length = 821
Score = 29.6 bits (66), Expect = 0.79
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 3 MVDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
M + E W A + D +DD DD + D +DD D DDE
Sbjct: 685 MDENEIWSALVKSRPDVEDDSDDSELDFAEDDFSDSTSDDE 725
Score = 26.9 bits (59), Expect = 6.6
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 3 MVDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+V + DD ++ + D +DD D DD+ D DDE
Sbjct: 694 LVKSRPDVEDDSDDSELDFAEDDFSDSTSDDEPKLDAIDDE 734
>gnl|CDD|225618 COG3076, COG3076, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 135
Score = 28.6 bits (64), Expect = 0.84
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 24 DDDDDDDDDDDDDDDDDDDEV 44
+D + +DDDDD+D D+DDD V
Sbjct: 113 EDPNAEDDDDDEDVDEDDDGV 133
Score = 28.6 bits (64), Expect = 0.98
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 12 DDDNNDDDDDDDDDDDDDD 30
+D N +DDDDD+D D+DDD
Sbjct: 113 EDPNAEDDDDDEDVDEDDD 131
Score = 28.2 bits (63), Expect = 1.3
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 8 WWMADDDNNDDDDDDDDDDDDDDD 31
W +D N +DDDDD+D D+DDD
Sbjct: 108 WGTYFEDPNAEDDDDDEDVDEDDD 131
Score = 27.5 bits (61), Expect = 2.4
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 17 DDDDDDDDDDDDDDDDDDD 35
+D + +DDDDD+D D+DDD
Sbjct: 113 EDPNAEDDDDDEDVDEDDD 131
Score = 27.5 bits (61), Expect = 2.4
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 18 DDDDDDDDDDDDDDDDDDD 36
+D + +DDDDD+D D+DDD
Sbjct: 113 EDPNAEDDDDDEDVDEDDD 131
Score = 27.5 bits (61), Expect = 2.4
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 19 DDDDDDDDDDDDDDDDDDD 37
+D + +DDDDD+D D+DDD
Sbjct: 113 EDPNAEDDDDDEDVDEDDD 131
Score = 27.5 bits (61), Expect = 2.4
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 20 DDDDDDDDDDDDDDDDDDD 38
+D + +DDDDD+D D+DDD
Sbjct: 113 EDPNAEDDDDDEDVDEDDD 131
Score = 27.5 bits (61), Expect = 2.4
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 21 DDDDDDDDDDDDDDDDDDD 39
+D + +DDDDD+D D+DDD
Sbjct: 113 EDPNAEDDDDDEDVDEDDD 131
Score = 27.5 bits (61), Expect = 2.4
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 22 DDDDDDDDDDDDDDDDDDD 40
+D + +DDDDD+D D+DDD
Sbjct: 113 EDPNAEDDDDDEDVDEDDD 131
Score = 27.5 bits (61), Expect = 2.4
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 23 DDDDDDDDDDDDDDDDDDD 41
+D + +DDDDD+D D+DDD
Sbjct: 113 EDPNAEDDDDDEDVDEDDD 131
>gnl|CDD|218126 pfam04520, Senescence_reg, Senescence regulator. This protein
regulates the expression of proteins associated with
leaf senescence in plants.
Length = 146
Score = 28.9 bits (65), Expect = 0.85
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 8 WWMADDDNNDDDDDDDDDDDDDDDDDD 34
W +D DDDD++D D
Sbjct: 73 WSKILRGRRRRSIEDSDDDDEEDGDGA 99
Score = 28.2 bits (63), Expect = 1.6
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 28 DDDDDDDDDDDDDDDEVI 45
+D DDDD++D D ++
Sbjct: 85 IEDSDDDDEEDGDGAMMV 102
Score = 27.0 bits (60), Expect = 3.0
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 9 WMADDDNNDDDDDDDDDDDDDDDDDDD 35
W +D DDDD++D D
Sbjct: 73 WSKILRGRRRRSIEDSDDDDEEDGDGA 99
Score = 26.2 bits (58), Expect = 6.0
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 27 DDDDDDDDDDDDDDDDEV 44
+D DDDD++D D V
Sbjct: 85 IEDSDDDDEEDGDGAMMV 102
Score = 25.8 bits (57), Expect = 9.2
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 22 DDDDDDDDDDDDDDD 36
+D DDDD++D D
Sbjct: 85 IEDSDDDDEEDGDGA 99
Score = 25.8 bits (57), Expect = 9.2
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 23 DDDDDDDDDDDDDDD 37
+D DDDD++D D
Sbjct: 85 IEDSDDDDEEDGDGA 99
Score = 25.8 bits (57), Expect = 9.2
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 24 DDDDDDDDDDDDDDD 38
+D DDDD++D D
Sbjct: 85 IEDSDDDDEEDGDGA 99
Score = 25.8 bits (57), Expect = 9.2
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 25 DDDDDDDDDDDDDDD 39
+D DDDD++D D
Sbjct: 85 IEDSDDDDEEDGDGA 99
Score = 25.8 bits (57), Expect = 9.2
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 26 DDDDDDDDDDDDDDD 40
+D DDDD++D D
Sbjct: 85 IEDSDDDDEEDGDGA 99
>gnl|CDD|221810 pfam12856, Apc9, Anaphase-promoting complex subunit 9. Apc9 is
one of the subunits of the anaphase-promoting complex,
or cyclosome, which is essential for regulating entry
into anaphase and exit from mitosis. The APC is a
ubiquitin-protein ligase complex. All APC subunits are
members of the cullin family proteins, which bind to a
ring-finger subunit via a conserved cullin domain. The
APC is made up of four parts, the third of which is a
tetratricopeptide repeat arm (TPR) that contains Apc9.
Length = 98
Score = 28.3 bits (63), Expect = 0.92
Identities = 6/32 (18%), Positives = 18/32 (56%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDDDDEVIIT 47
+ D DD+ + + DD+ D+ ++ ++++
Sbjct: 61 HKDSYRPDDNIECGESDDESDETKENGSLLLS 92
Score = 25.2 bits (55), Expect = 9.2
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 22 DDDDDDDDDDDDDDDDDDDDDEVIITCKTLIS 53
D DD+ + + DD+ DE L+S
Sbjct: 61 HKDSYRPDDNIECGESDDESDETKENGSLLLS 92
>gnl|CDD|177958 PLN02324, PLN02324, triacylglycerol lipase.
Length = 415
Score = 29.2 bits (65), Expect = 0.94
Identities = 5/30 (16%), Positives = 16/30 (53%)
Query: 1 MMMVDGEWWMADDDNNDDDDDDDDDDDDDD 30
M+ D W + D + +++D+ ++++
Sbjct: 382 MVQSDDGTWKLNGDRSKKKQEEEDEKEENN 411
Score = 26.5 bits (58), Expect = 8.1
Identities = 8/43 (18%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 3 MVDGEWWMADDDNNDDDDDDD---DDDDDDDDDDDDDDDDDDD 42
+V G WW+ ++ DD + D +++D+ ++++
Sbjct: 369 LVPGHWWVLENKGMVQSDDGTWKLNGDRSKKKQEEEDEKEENN 411
Score = 26.1 bits (57), Expect = 9.8
Identities = 6/33 (18%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 1 MMMVDGEWWMADDDNNDDDDDDDDDDDDDDDDD 33
+ DG W + N D +++D+ ++++
Sbjct: 383 VQSDDGTWKL----NGDRSKKKQEEEDEKEENN 411
>gnl|CDD|227458 COG5129, MAK16, Nuclear protein with HMG-like acidic region
[General function prediction only].
Length = 303
Score = 29.2 bits (65), Expect = 0.99
Identities = 8/35 (22%), Positives = 22/35 (62%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDD 39
D E W+ D + + + ++++ + + D+D+D+D+
Sbjct: 230 DLEKWLGSDQSMETSESEEEESSESESDEDEDEDN 264
>gnl|CDD|215541 PLN03020, PLN03020, low-temperature-induced protein; Provisional.
Length = 556
Score = 29.3 bits (65), Expect = 1.0
Identities = 9/30 (30%), Positives = 20/30 (66%)
Query: 15 NNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
++D+ DD D ++DDD+D++ +D ++
Sbjct: 56 HHDEHRVPDDHDLYEEDDDEDEEMAEDPQI 85
Score = 27.7 bits (61), Expect = 3.8
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 21 DDDDDDDDDDDDDDDDDDDDDDEVI 45
D+ DD D ++DDD+D+E+
Sbjct: 56 HHDEHRVPDDHDLYEEDDDEDEEMA 80
Score = 26.9 bits (59), Expect = 5.8
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
+ D+ DD D ++DDD+D++ +D I
Sbjct: 56 HHDEHRVPDDHDLYEEDDDEDEEMAEDPQI 85
>gnl|CDD|113290 pfam04514, BTV_NS2, Bluetongue virus non-structural protein NS2.
This family includes NS2 proteins from other members of
the Orbivirus genus. NS2 is a non-specific
single-stranded RNA-binding protein that forms large
homomultimers and accumulates in viral inclusion bodies
of infected cells. Three RNA binding regions have been
identified in Bluetongue virus serotype 17 at residues
2-11, 153-166 and 274-286. NS2 multimers also possess
nucleotidyl phosphatase activity. The precise function
of NS2 is not known, but it may be involved in the
transport and condensation of viral mRNAs.
Length = 363
Score = 29.1 bits (65), Expect = 1.0
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 23 DDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTTQR 59
D DD+D+ +D +D + E IT I R++ R
Sbjct: 254 RDSDDEDEHGEDSEDGETKPESYIT-SEYIERISEIR 289
>gnl|CDD|218228 pfam04720, DUF506, Protein of unknown function (DUF506). Family
of uncharacterized plant proteins.
Length = 218
Score = 29.0 bits (65), Expect = 1.0
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+D N+ +D+ DD D++D++D E
Sbjct: 10 EDGNETVEDESFSGSGDDSSDEEDEEDSSSE 40
>gnl|CDD|223032 PHA03283, PHA03283, envelope glycoprotein E; Provisional.
Length = 542
Score = 29.1 bits (65), Expect = 1.0
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
ND + + D DD D D++ E
Sbjct: 449 NDPEVLVFERLASDSDDSFDSSSDEELE 476
Score = 26.4 bits (58), Expect = 9.4
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 15 NNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
N+ + + D DD D D++ +
Sbjct: 449 NDPEVLVFERLASDSDDSFDSSSDEELEP 477
>gnl|CDD|203444 pfam06424, PRP1_N, PRP1 splicing factor, N-terminal. This domain
is specific to the N-terminal part of the prp1 splicing
factor, which is involved in mRNA splicing (and
possibly also poly(A)+ RNA nuclear export and cell
cycle progression). This domain is specific to the N
terminus of the RNA splicing factor encoded by prp1. It
is involved in mRNA splicing and possibly also
poly(A)and RNA nuclear export and cell cycle
progression.
Length = 131
Score = 28.4 bits (64), Expect = 1.1
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 8/42 (19%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDD--------DDDDDDDDEV 44
A D + DD++D+D D D++ DD+D++ D +
Sbjct: 25 ARDGVDIDDEEDEDPKRYQDGDNEGLFSDGKYDDEDEEADRI 66
>gnl|CDD|219939 pfam08619, Nha1_C, Alkali metal cation/H+ antiporter Nha1 C
terminus. The C terminus of the plasma membrane Nha1
antiporter plays an important role in the immediate cell
response to hypo-osmotic shock which prevents an
execessive loss of ions and water. This domain is found
with pfam00999.
Length = 430
Score = 29.0 bits (65), Expect = 1.2
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D +D+D + DD D DD++E
Sbjct: 379 PSRPRSRRDSEDEDTERDDSDSDDEEE 405
Score = 28.6 bits (64), Expect = 1.5
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
++ D +D+D + DD D DD+E
Sbjct: 371 REPSSSSPPSRPRSRRDSEDEDTERDDSDSDDEE 404
Score = 28.2 bits (63), Expect = 1.9
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
+ D +D+D + DD D DD+++
Sbjct: 380 SRPRSRRDSEDEDTERDDSDSDDEEETPA 408
Score = 28.2 bits (63), Expect = 2.1
Identities = 13/53 (24%), Positives = 17/53 (32%), Gaps = 20/53 (37%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDD--------------------DDDDDDE 43
+ D +D+D + DD D DD DDDDE
Sbjct: 377 SPPSRPRSRRDSEDEDTERDDSDSDDEEETPAERRRRLAALGELPSARDDDDE 429
>gnl|CDD|220251 pfam09462, Mus7, Mus7/MMS22 family. This family includes a
conserved region from the Mus7 protein. Mus7 is involved
in the repair of replication-associated DNA damage in
the fission yeast Schizosaccharomyces pombe. Mus7
functions in the same pathway as Mus81, a subunit of the
Mus81-Eme1 structure-specific endonuclease, which has
been implicated in the repair of the
replication-associated DNA damage. The MMS22 proteins
are involved in repairing double-stranded DNA breaks
created by the cleavage reaction of topoisomerase II.
Length = 603
Score = 29.1 bits (65), Expect = 1.3
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 15 NNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTTQRWLDVGPSWTEDEHKS 74
D+D D D DD + +++D E ++L+S + + ED
Sbjct: 358 EQSSSADEDSQDYGDLDDIELLYEEEDTEGAEILRSLLSP---ALERLLSNQFGEDRCPE 414
Query: 75 A 75
Sbjct: 415 D 415
>gnl|CDD|105955 PRK12820, PRK12820, bifunctional aspartyl-tRNA
synthetase/aspartyl/glutamyl-tRNA amidotransferase
subunit C; Provisional.
Length = 706
Score = 29.2 bits (65), Expect = 1.3
Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 104 DDSF-GHYTCSHTGDRKCLPGW 124
D SF GH + TG CL GW
Sbjct: 5 DRSFCGHLSLDDTGREVCLAGW 26
>gnl|CDD|221603 pfam12496, BNIP2, Bcl2-/adenovirus E1B nineteen kDa-interacting
protein 2. This domain family is found in eukaryotes,
and is typically between 119 and 133 amino acids in
length. There is a conserved HGGY sequence motif. This
family is Bcl2-/adenovirus E1B nineteen kDa-interacting
protein 2. It interacts with pro- and anti- apoptotic
molecules in the cell.
Length = 126
Score = 28.1 bits (63), Expect = 1.3
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
DD + DD D + DD D DD D D
Sbjct: 24 LSDDLLETPDDLDINVDDLDTPDDSDSLDFPG 55
Score = 27.4 bits (61), Expect = 2.0
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ DD D + DD D DD D D ++ E
Sbjct: 29 LETPDDLDINVDDLDTPDDSDSLDFPGNELE 59
Score = 27.4 bits (61), Expect = 2.1
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DD DD D + DD D DD D D +E
Sbjct: 26 DDLLETPDDLDINVDDLDTPDDSDSLDFPGNE 57
Score = 27.4 bits (61), Expect = 2.4
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
+G D DD D + DD D DD D D ++
Sbjct: 20 EGSLLSDDLLETPDDLDINVDDLDTPDDSDSLDFPGNE 57
Score = 27.4 bits (61), Expect = 2.5
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
DD + DD D + DD D DD D +
Sbjct: 26 DDLLETPDDLDINVDDLDTPDDSDSLDFP 54
Score = 26.2 bits (58), Expect = 5.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDD 41
D D N DD D DD D D ++ + +DD
Sbjct: 34 DLDINVDDLDTPDDSDSLDFPGNELEWEDD 63
Score = 25.8 bits (57), Expect = 8.9
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
DD + + DD D DD D D ++ + +DD
Sbjct: 32 PDDLDINVDDLDTPDDSDSLDFPGNELEWEDD 63
>gnl|CDD|165191 PHA02854, PHA02854, putative host range protein; Provisional.
Length = 178
Score = 28.3 bits (63), Expect = 1.3
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDD 39
D E ++ D+ D D+D DD +D D + +D DD
Sbjct: 143 DKEQFLKDEFEYYDSDNDFDDYEDCDKNRNDSFDD 177
>gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit. This model
describes Pseudomonas denitrificans CobT gene product,
which is a cobalt chelatase subunit that functions in
cobalamin biosynthesis. Cobalamin (vitamin B12) can be
synthesized via several pathways, including an aerobic
pathway (found in Pseudomonas denitrificans) and an
anaerobic pathway (found in P. shermanii and Salmonella
typhimurium). These pathways differ in the point of
cobalt insertion during corrin ring formation. There are
apparently a number of variations on these two pathways,
where the major differences seem to be concerned with
the process of ring contraction. Confusion regarding the
functions of enzymes found in the aerobic vs. anaerobic
pathways has arisen because nonhomologous genes in these
different pathways were given the same gene symbols.
Thus, cobT in the aerobic pathway (P. denitrificans) is
not a homolog of cobT in the anaerobic pathway (S.
typhimurium). It should be noted that E. coli
synthesizes cobalamin only when it is supplied with the
precursor cobinamide, which is a complex intermediate.
Additionally, all E. coli cobalamin synthesis genes
(cobU, cobS and cobT) were named after their Salmonella
typhimurium homologs which function in the anaerobic
cobalamin synthesis pathway. This model describes the
aerobic cobalamin pathway Pseudomonas denitrificans CobT
gene product, which is a cobalt chelatase subunit, with
a MW ~70 kDa. The aerobic pathway cobalt chelatase is a
heterotrimeric, ATP-dependent enzyme that catalyzes
cobalt insertion during cobalamin biosynthesis. The
other two subunits are the P. denitrificans CobS
(TIGR01650) and CobN (pfam02514 CobN/Magnesium
Chelatase) proteins. To avoid potential confusion with
the nonhomologous Salmonella typhimurium/E.coli cobT
gene product, the P. denitrificans gene symbol is not
used in the name of this model [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 600
Score = 28.8 bits (64), Expect = 1.4
Identities = 8/31 (25%), Positives = 19/31 (61%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDD 40
M DD ++D++D DDD +++ ++ + +
Sbjct: 203 MGDDTESEDEEDGDDDQPTENEQEEQGEGEG 233
Score = 28.0 bits (62), Expect = 2.4
Identities = 8/34 (23%), Positives = 22/34 (64%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+A++ +D + +D++D DDD +++ ++ + E
Sbjct: 199 LAEEMGDDTESEDEEDGDDDQPTENEQEEQGEGE 232
Score = 28.0 bits (62), Expect = 2.7
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ D + + +++ D DD D+ DD+
Sbjct: 241 PQESEATDRESESGEEEMVQSDQDDLPDESDDD 273
Score = 27.6 bits (61), Expect = 4.0
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
D ++ +++ D DD D+ DDD + E
Sbjct: 247 TDRESESGEEEMVQSDQDDLPDESDDDSETPGEG 280
Score = 27.2 bits (60), Expect = 4.8
Identities = 7/29 (24%), Positives = 17/29 (58%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDD 41
DD +D++D DDD +++ ++ + +
Sbjct: 205 DDTESEDEEDGDDDQPTENEQEEQGEGEG 233
Score = 27.2 bits (60), Expect = 5.0
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
A ++ D + + +++ D DD D+ D+
Sbjct: 240 APQESEATDRESESGEEEMVQSDQDDLPDESDD 272
>gnl|CDD|219038 pfam06459, RR_TM4-6, Ryanodine Receptor TM 4-6. This region covers
TM regions 4-6 of the ryanodine receptor 1 family.
Length = 217
Score = 28.5 bits (64), Expect = 1.4
Identities = 4/30 (13%), Positives = 15/30 (50%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
++++++ DD ++D+++ V
Sbjct: 148 STSPAEEEEEEGSGSGDDGEEDEEEGIVYF 177
>gnl|CDD|217059 pfam02480, Herpes_gE, Alphaherpesvirus glycoprotein E.
Glycoprotein E (gE) of Alphaherpesvirus forms a complex
with glycoprotein I (gI) (pfam01688), functioning as an
immunoglobulin G (IgG) Fc binding protein. gE is
involved in virus spread but is not essential for
propagation.
Length = 437
Score = 28.9 bits (65), Expect = 1.4
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 18 DDDDDDDDDDDDDDDDDDDDDDDDDE 43
++ +D D + DD++ D D D E
Sbjct: 400 TNELFEDVSSDSESDDEEFDSDSDRE 425
Score = 28.1 bits (63), Expect = 2.5
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDDDD 42
N+ +D D + DD++ D D D +
Sbjct: 401 NELFEDVSSDSESDDEEFDSDSDREPS 427
Score = 27.4 bits (61), Expect = 3.7
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDD 41
++ +D D + DD++ D D D
Sbjct: 400 TNELFEDVSSDSESDDEEFDSDSDR 424
Score = 27.0 bits (60), Expect = 6.0
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDE 43
++ +D D + DD++ D D D +
Sbjct: 401 NELFEDVSSDSESDDEEFDSDSDREPS 427
Score = 26.6 bits (59), Expect = 7.3
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
N +D D + DD++ D D D +
Sbjct: 400 TNELFEDVSSDSESDDEEFDSDSDREPSG 428
Score = 26.2 bits (58), Expect = 9.2
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDD 40
++ +D D + DD++ D D D +
Sbjct: 399 PTNELFEDVSSDSESDDEEFDSDSDREPSG 428
Score = 26.2 bits (58), Expect = 9.9
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 26 DDDDDDDDDDDDDDDDDEVI 45
++ +D D + DD+E
Sbjct: 400 TNELFEDVSSDSESDDEEFD 419
>gnl|CDD|188687 cd08732, RGS-like_4, Uncharacterized Regulator of G protein
Signaling (RGS) domain subfamily, child 4. These
uncharacterized RGS-like domains consists largely of
hypothetical proteins. The RGS domain is an essential
part of the Regulator of G-protein Signaling (RGS)
protein family, a diverse group of multifunctional
proteins that regulate cellular signaling events
downstream of G-protein coupled receptors (GPCRs). RGS
proteins play critical regulatory role as GTPase
activating proteins (GAPs) of the heterotrimeric
G-protein G-alpha-subunits. RGS proteins play critical
regulatory role as GTPase activating proteins (GAPs) of
the heterotrimeric G-protein G-alpha-subunits. RGS
proteins regulate many aspects of embryonic development
such as glial differentiation, embryonic axis
formation, skeletal and muscle development, cell
migration during early embryogenesis, as well as
apoptosis, cell proliferation, and modulation of
cardiac development. Several RGS proteins can fine-tune
immune responses, while others play an important role
in neuronal signal modulation. Some RGS proteins are
the principal elements needed for proper vision.
Length = 139
Score = 27.8 bits (62), Expect = 1.5
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIIT 47
DD D + +DDD D+ ++ D D++++
Sbjct: 24 SIDDIILDPGIEHGEDDDFDEQVEELRYILDTDQILLK 61
Score = 26.3 bits (58), Expect = 5.7
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
++ +DDD D+ ++ D D D I
Sbjct: 33 GIEHGEDDDFDEQVEELRYILDTDQILLKDQWRHI 67
Score = 26.3 bits (58), Expect = 6.8
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDD 41
+ + D + +DDD D+ ++ D D
Sbjct: 23 ESIDDIILDPGIEHGEDDDFDEQVEELRYILDTDQIL 59
Score = 26.3 bits (58), Expect = 6.9
Identities = 7/37 (18%), Positives = 12/37 (32%)
Query: 6 GEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
D + +DDD D+ ++ D D
Sbjct: 23 ESIDDIILDPGIEHGEDDDFDEQVEELRYILDTDQIL 59
Score = 25.9 bits (57), Expect = 8.7
Identities = 7/37 (18%), Positives = 15/37 (40%)
Query: 7 EWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ + + +DDD D+ ++ D D D+
Sbjct: 27 DIILDPGIEHGEDDDFDEQVEELRYILDTDQILLKDQ 63
>gnl|CDD|227504 COG5177, COG5177, Uncharacterized conserved protein [Function
unknown].
Length = 769
Score = 28.9 bits (64), Expect = 1.5
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 9 WMADDDNNDDDDDDDDD-----DDDDDDDDDDDDDDDDDEVII 46
W D++ D +D++ DDDD ++D+++ D+E I
Sbjct: 392 WAEDEEEEDGQCNDEESTMSAIDDDDPKENDNEEVAGDEESAI 434
>gnl|CDD|165416 PHA03145, PHA03145, helicase-primase primase subunit; Provisional.
Length = 1058
Score = 28.8 bits (64), Expect = 1.6
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDD 37
DG W+ A D++DD+D D + D++
Sbjct: 695 DGPWFPAGGGPGDEEDDEDPDAEALAHGGVDEE 727
>gnl|CDD|237798 PRK14714, PRK14714, DNA polymerase II large subunit; Provisional.
Length = 1337
Score = 28.9 bits (65), Expect = 1.6
Identities = 7/46 (15%), Positives = 17/46 (36%)
Query: 1 MMMVDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
M +W D + D ++ ++++ D D+ + I
Sbjct: 265 MKEEGWDWLQELIDGTIEGKSDAGEEGEEEELSTDADEYEKGPPRI 310
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 28.8 bits (64), Expect = 1.7
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
D + +D D D D +D DD++++++D+ +
Sbjct: 95 QDSESHEDGSDGSDMDSEDSADDEEEEEEDESL 127
Score = 28.0 bits (62), Expect = 2.3
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DG D + DD++++++D+ +D+ DD+D+ D
Sbjct: 102 DGSDGSDMDSEDSADDEEEEEEDESLEDEMIDDEDEADL 140
Score = 27.6 bits (61), Expect = 3.6
Identities = 13/59 (22%), Positives = 31/59 (52%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTTQRWLDVGPSWTEDE 71
+D +D D D +D DD++++++D+ +D+ + + + + D+ TED+
Sbjct: 101 EDGSDGSDMDSEDSADDEEEEEEDESLEDEMIDDEDEADLFNESESSLEDLSDDETEDD 159
Score = 27.6 bits (61), Expect = 3.9
Identities = 10/33 (30%), Positives = 24/33 (72%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
D D+ D DD++++++D+ +D+ DD+D+ ++
Sbjct: 108 DMDSEDSADDEEEEEEDESLEDEMIDDEDEADL 140
Score = 27.3 bits (60), Expect = 5.3
Identities = 9/33 (27%), Positives = 21/33 (63%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D ++++D D D D +D DD++++++D+
Sbjct: 95 QDSESHEDGSDGSDMDSEDSADDEEEEEEDESL 127
Score = 26.9 bits (59), Expect = 6.8
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D + +D D D D +D DD++++E
Sbjct: 93 KLQDSESHEDGSDGSDMDSEDSADDEEEEE 122
Score = 26.5 bits (58), Expect = 7.6
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D+D+ +D DD +D DD+D +D++DDE
Sbjct: 217 DEDDFEDYFQDDSEDGKDDEDFGSGEDEEDDE 248
Score = 26.5 bits (58), Expect = 7.7
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDD 39
D E D +D D +D DD++++++D+ +D+
Sbjct: 96 DSESHEDGSDGSDMDSEDSADDEEEEEEDESLEDE 130
Score = 26.5 bits (58), Expect = 7.7
Identities = 8/30 (26%), Positives = 21/30 (70%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDD 41
+D ++ D D +D DD++++++D+ +D+
Sbjct: 101 EDGSDGSDMDSEDSADDEEEEEEDESLEDE 130
>gnl|CDD|240400 PTZ00396, PTZ00396, Casein kinase II subunit beta; Provisional.
Length = 251
Score = 28.1 bits (63), Expect = 1.8
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 27 DDDDDDDDDDDDDDDDEV 44
D + DD+D +D+ EV
Sbjct: 69 DSEPPDDEDLEDEQFLEV 86
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional.
Length = 333
Score = 28.5 bits (64), Expect = 1.8
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 25 DDDDDDDDDDDDDDDDDDEV 44
DDD D+D +DD+ EV
Sbjct: 47 KRDDDSYDEDVEDDEGVGEV 66
>gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family
domain in Subtilisin-like proteins. This family is a
member of the Peptidases S8 or Subtilases serine endo-
and exo-peptidase clan. They have an Asp/His/Ser
catalytic triad similar to that found in trypsin-like
proteases, but do not share their three-dimensional
structure and are not homologous to trypsin. The
stability of subtilases may be enhanced by calcium,
some members have been shown to bind up to 4 ions via
binding sites with different affinity. Some members of
this clan contain disulfide bonds. These enzymes can be
intra- and extracellular, some function at extreme
temperatures and pH values.
Length = 259
Score = 28.3 bits (64), Expect = 1.8
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDD 39
DDD N DD + ++D+D DD+
Sbjct: 37 DDDGNGYVDDIYGWNFVNNDNDPMDDNG 64
>gnl|CDD|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM).
This family consists of several Plasmodium falciparum
SPAM (secreted polymorphic antigen associated with
merozoites) proteins. Variation among SPAM alleles is
the result of deletions and amino acid substitutions in
non-repetitive sequences within and flanking the
alanine heptad-repeat domain. Heptad repeats in which
the a and d position contain hydrophobic residues
generate amphipathic alpha-helices which give rise to
helical bundles or coiled-coil structures in proteins.
SPAM is an example of a P. falciparum antigen in which
a repetitive sequence has features characteristic of a
well-defined structural element.
Length = 164
Score = 27.9 bits (62), Expect = 2.0
Identities = 8/32 (25%), Positives = 25/32 (78%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
++D D+ +DD++++++D+++ ++ +D +DE
Sbjct: 40 NEDVKDEKQEDDEEEEEEDEEEIEEPEDIEDE 71
Score = 27.5 bits (61), Expect = 2.7
Identities = 9/38 (23%), Positives = 26/38 (68%), Gaps = 5/38 (13%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDD-----DDDDDDDEVI 45
+N D D+ +DD++++++D++ +D +D++E++
Sbjct: 38 KENEDVKDEKQEDDEEEEEEDEEEIEEPEDIEDEEEIV 75
Score = 27.1 bits (60), Expect = 3.2
Identities = 8/35 (22%), Positives = 27/35 (77%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
+D ++ +DD++++++D+++ ++ +D +D+E I+
Sbjct: 41 EDVKDEKQEDDEEEEEEDEEEIEEPEDIEDEEEIV 75
Score = 27.1 bits (60), Expect = 3.9
Identities = 8/31 (25%), Positives = 22/31 (70%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
D D +++D D+ +DD++++++D++E+
Sbjct: 32 DKEDIIKENEDVKDEKQEDDEEEEEEDEEEI 62
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 28.4 bits (63), Expect = 2.0
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 9 WMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDD 41
W DD + D D D D + D + D +
Sbjct: 3029 WPPDDTEDSDADSLFDSDSERSDLEALDPLPPE 3061
>gnl|CDD|165178 PHA02835, PHA02835, putative secreted protein; Provisional.
Length = 186
Score = 27.7 bits (61), Expect = 2.1
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 12/56 (21%)
Query: 111 TCSHTGDRKCLPGWSGDYCTKAVQKLSPTKALPNRTSRTLFCVLEPSMQLYGNCAK 166
TC+ G +KCL A +KL L +T+ + +++ + +YG+C K
Sbjct: 112 TCTKNGKKKCL----------AQEKLPKIPNLIYKTAEHVNGIID--LNIYGSCVK 155
>gnl|CDD|223702 COG0629, Ssb, Single-stranded DNA-binding protein [DNA replication,
recombination, and repair].
Length = 167
Score = 27.8 bits (62), Expect = 2.2
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDD 38
+ DD++ + + DDDD
Sbjct: 138 SAEAPGDDENASPFVVVNAPIEFDDDD 164
>gnl|CDD|218482 pfam05178, Kri1, KRI1-like family. The yeast member of this
family (Kri1p) is found to be required for 40S ribosome
biogenesis in the nucleolus.
Length = 99
Score = 26.8 bits (60), Expect = 2.2
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DD +++D+++ DDD+D D D+D+E
Sbjct: 68 GDDYYEEEDEEEKPTWDDDEDIGDLVPDEDEE 99
>gnl|CDD|223009 PHA03211, PHA03211, serine/threonine kinase US3; Provisional.
Length = 461
Score = 28.3 bits (63), Expect = 2.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDD 41
+ +DDDDDD DD D+ +DD
Sbjct: 89 AEAEDDDDDDAPDDVAYPDEYAEDD 113
Score = 28.3 bits (63), Expect = 2.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 18 DDDDDDDDDDDDDDDDDDDDDDDDD 42
+ +DDDDDD DD D+ +DD
Sbjct: 89 AEAEDDDDDDAPDDVAYPDEYAEDD 113
Score = 26.8 bits (59), Expect = 5.8
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 4/34 (11%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDD----DDDDDDD 40
+ ++ D + +DDDDDD DD D+ +DD
Sbjct: 80 SSEEYPDSGAEAEDDDDDDAPDDVAYPDEYAEDD 113
Score = 26.8 bits (59), Expect = 7.0
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 2 MMVDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDD 37
M E+ + + DDDDDD DD D+ +DD
Sbjct: 78 MRSSEEYPDSGAEAEDDDDDDAPDDVAYPDEYAEDD 113
Score = 26.4 bits (58), Expect = 9.2
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDD 37
+A+ ++++ D + +DDDDDD DD
Sbjct: 75 LAEMRSSEEYPDSGAEAEDDDDDDAPDD 102
>gnl|CDD|218889 pfam06088, TLP-20, Nucleopolyhedrovirus telokin-like protein-20
(TLP20). This family consists of several
Nucleopolyhedrovirus telokin-like protein-20 (TLP20)
sequences. The function of this family is unknown but
TLP20 is known to shares some antigenic similarities to
the smooth muscle protein telokin although the amino
acid sequence shows no homologies to telokin.
Length = 162
Score = 27.3 bits (61), Expect = 2.6
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 15 NNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
++ +D++D+D++D+ D + DD
Sbjct: 119 HHSSEDENDEDEEDNADRAGIESGIDDSAP 148
Score = 26.5 bits (59), Expect = 4.7
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDD 37
+D ND+D++D+ D + DD
Sbjct: 123 EDENDEDEEDNADRAGIESGIDDSA 147
Score = 26.2 bits (58), Expect = 7.6
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 18 DDDDDDDDDDDDDDDDDDDDDDDDDEV 44
+D++D+D++D+ D + DD
Sbjct: 123 EDENDEDEEDNADRAGIESGIDDSAPP 149
Score = 25.8 bits (57), Expect = 9.9
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCK 49
+ +D++D+D++D+ D + DD + K
Sbjct: 119 HHSSEDENDEDEEDNADRAGIESGIDDSAPPSPK 152
>gnl|CDD|218303 pfam04874, Mak16, Mak16 protein C-terminal region. The precise
function of this eukaryotic protein family is unknown.
The yeast orthologues have been implicated in cell
cycle progression and biogenesis of 60S ribosomal
subunits. The Schistosoma mansoni Mak16 has been shown
to target protein transport to the nucleolus.
Length = 97
Score = 26.8 bits (59), Expect = 2.6
Identities = 5/32 (15%), Positives = 22/32 (68%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D++ ++++++D+ + + DD++ +++ +D
Sbjct: 64 DEEEEEEEEEEDEGEIEYVSDDEELEEEIEDL 95
Score = 26.4 bits (58), Expect = 3.6
Identities = 5/32 (15%), Positives = 26/32 (81%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
++N+++++++++++D+ + + DD++ ++E+
Sbjct: 61 EENDEEEEEEEEEEDEGEIEYVSDDEELEEEI 92
Score = 25.6 bits (56), Expect = 7.5
Identities = 5/32 (15%), Positives = 22/32 (68%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+++ +++++D+ + + DD++ +++ +D E
Sbjct: 65 EEEEEEEEEEDEGEIEYVSDDEELEEEIEDLE 96
Score = 25.2 bits (55), Expect = 9.5
Identities = 4/32 (12%), Positives = 23/32 (71%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+D+ +++++++D+ + + DD++ +++ ++
Sbjct: 63 NDEEEEEEEEEEDEGEIEYVSDDEELEEEIED 94
>gnl|CDD|239286 cd02988, Phd_like_VIAF, Phosducin (Phd)-like family, Viral
inhibitor of apoptosis (IAP)-associated factor (VIAF)
subfamily; VIAF is a Phd-like protein that functions in
caspase activation during apoptosis. It was identified
as an IAP binding protein through a screen of a human
B-cell library using a prototype IAP. VIAF lacks a
consensus IAP binding motif and while it does not
function as an IAP antagonist, it still plays a
regulatory role in the complete activation of caspases.
VIAF itself is a substrate for IAP-mediated
ubiquitination, suggesting that it may be a target of
IAPs in the prevention of cell death. The similarity of
VIAF to Phd points to a potential role distinct from
apoptosis regulation. Phd functions as a cytosolic
regulator of G protein by specifically binding to G
protein betagamma (Gbg)-subunits. The C-terminal domain
of Phd adopts a thioredoxin fold, but it does not
contain a CXXC motif. Phd interacts with G protein beta
mostly through the N-terminal helical domain.
Length = 192
Score = 27.6 bits (62), Expect = 2.7
Identities = 5/25 (20%), Positives = 15/25 (60%)
Query: 21 DDDDDDDDDDDDDDDDDDDDDDEVI 45
++ + D+ D++ D+++DD +
Sbjct: 37 ENALEKKLLDELDEELDEEEDDRFL 61
Score = 26.8 bits (60), Expect = 4.9
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 15 NNDDDDDDDDDDDDDDDDDDDD 36
N + D+ D++ D+++DD
Sbjct: 37 ENALEKKLLDELDEELDEEEDD 58
Score = 26.1 bits (58), Expect = 8.2
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDD 35
+N + D+ D++ D+++DD
Sbjct: 37 ENALEKKLLDELDEELDEEEDD 58
Score = 26.1 bits (58), Expect = 8.9
Identities = 5/23 (21%), Positives = 15/23 (65%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDD 38
+++ + D+ D++ D+++DD
Sbjct: 36 HENALEKKLLDELDEELDEEEDD 58
>gnl|CDD|219912 pfam08574, DUF1762, Protein of unknown function (DUF1762). This
is a family of proteins of unknown function. Yeast IWR1
is known to interact with RNA polymerase II and
deletion of this protein results in hypersensitivity to
the K1 killer toxin.
Length = 77
Score = 26.2 bits (58), Expect = 2.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D++ + +D +D+DDD D DD+D + E
Sbjct: 35 IDEDEEYHEDLANDEDDDADQVLSDDEDSNAE 66
>gnl|CDD|220745 pfam10422, LRS4, Monopolin complex subunit LRS4. Monopolin is a
protein complex, originally identified in Saccharomyces
cerevisiae, that is required for the segregation of
homologous centromeres to opposite poles of a dividing
cell during meiosis I. The orthologous complex in
Schizosaccharomyces pombe is not required for meiosis I
chromosome segregation, but is proposed to play a
similar physiological role in clamping microtubule
binding sites. In S.cerevisiae this subunit is called
LRS4, and in S. pombe it is known as Mde4.
Length = 211
Score = 27.7 bits (61), Expect = 3.0
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTTQR 59
+ D+ D+ D DDD D+D + + E I + RL+ +
Sbjct: 162 KHGDNTIFDNVSDILDDDTDEDAESSNGVETIQPAGVTLRRLSALK 207
>gnl|CDD|173464 PTZ00180, PTZ00180, 60S ribosomal protein L8; Provisional.
Length = 260
Score = 27.8 bits (62), Expect = 3.0
Identities = 10/26 (38%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 108 GHYTCS---HTGDRKCLPGWSGDYCT 130
G C+ GDR L SG Y T
Sbjct: 110 GTIVCNVEEKPGDRGTLARASGCYAT 135
>gnl|CDD|177447 PHA02664, PHA02664, hypothetical protein; Provisional.
Length = 534
Score = 27.7 bits (61), Expect = 3.1
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDD 40
A D D D+DD D+ + D+ D +DD D
Sbjct: 445 AHADRADSDEDDMDEQESGDERADGEDDSD 474
Score = 27.3 bits (60), Expect = 4.3
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 19 DDDDDDDDDDDDDDDDDDDDDDDDEV 44
+D+ D DD D+ D + DD V
Sbjct: 485 EDESDSADDSWGDESDSGIEHDDGGV 510
Score = 27.3 bits (60), Expect = 5.0
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 15 NNDDDDDDDDDDDDDDDDDDDDDDDD 40
+++D+ D DD D+ D + DD
Sbjct: 483 SSEDESDSADDSWGDESDSGIEHDDG 508
Score = 26.9 bits (59), Expect = 5.5
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ D D+DD D+ + D+ D +DD D
Sbjct: 445 AHADRADSDEDDMDEQESGDERADGEDDSDSS 476
Score = 26.9 bits (59), Expect = 5.6
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
A + D D+DD D+ + D+ D +DD D
Sbjct: 443 APAHADRADSDEDDMDEQESGDERADGEDDSD 474
Score = 26.9 bits (59), Expect = 5.7
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDD 36
+ +D +D DD D+ D + DD
Sbjct: 482 TSSEDESDSADDSWGDESDSGIEHDDG 508
Score = 26.9 bits (59), Expect = 5.9
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
D + + + D+ D DD D+ D + DD + I
Sbjct: 474 DSSYSYSTTSSEDESDSADDSWGDESDSGIEHDDGGVGQAI 514
>gnl|CDD|219911 pfam08572, PRP3, pre-mRNA processing factor 3 (PRP3). Pre-mRNA
processing factor 3 (PRP3) is a U4/U6-associated
splicing factor. The human PRP3 has been implicated in
autosomal retinitis pigmentosa.
Length = 222
Score = 27.3 bits (61), Expect = 3.3
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 9/42 (21%)
Query: 7 EWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITC 48
EWW D DD D +D +D+ D+D D++ IT
Sbjct: 82 EWW---------DMPILDDPDYNDLEDESDEDIDEEMSSITN 114
>gnl|CDD|235378 PRK05256, PRK05256, condesin subunit E; Provisional.
Length = 238
Score = 27.3 bits (61), Expect = 3.3
Identities = 5/35 (14%), Positives = 20/35 (57%)
Query: 2 MMVDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDD 36
++ DGE ++ + +D+ +++ D+++++
Sbjct: 204 LIRDGEAMPIENHLQQESSLNDETEEEQPDEEEEE 238
>gnl|CDD|220232 pfam09421, FRQ, Frequency clock protein. The frequency clock
protein, is the central component of the frq-based
circadian negative feedback loop, regulates various
aspects of the circadian clock in Neurospora crassa.
This protein has been shown to interact with itself via
a coiled-coil.
Length = 989
Score = 27.7 bits (61), Expect = 3.5
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+D++ D D D+ ++ DDD D D+
Sbjct: 896 SDNNYPDKVDLASGDETGEEPDDDIDASRMVDD 928
Score = 26.5 bits (58), Expect = 8.6
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 9 WMADDDNNDDDDDDDDDDDDDDDDDDDDD 37
+ D D+ ++ DDD D DD
Sbjct: 900 YPDKVDLASGDETGEEPDDDIDASRMVDD 928
>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
transition [Transcription / Cell division and chromosome
partitioning].
Length = 423
Score = 27.4 bits (60), Expect = 3.7
Identities = 2/25 (8%), Positives = 5/25 (20%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDD 34
+ N + + D
Sbjct: 292 IHKSVGNKEIRGGISTGEMIDVRKL 316
Score = 27.4 bits (60), Expect = 4.6
Identities = 2/34 (5%), Positives = 6/34 (17%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ D + + + D
Sbjct: 285 LGFDYEFIHKSVGNKEIRGGISTGEMIDVRKLPC 318
>gnl|CDD|221402 pfam12063, DUF3543, Domain of unknown function (DUF3543). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 217 to 291 amino acids in length. This domain is
found associated with pfam00069. This domain has a
single completely conserved residue A that may be
functionally important.
Length = 227
Score = 27.3 bits (61), Expect = 3.7
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 28 DDDDDDDDDDDDDDDEVIITCKTLIS-RLTTQR 59
++D D++D DD+D E+I I RL+ R
Sbjct: 191 ENDKDENDGLDDEDKEMIEKYIVSIEKRLSALR 223
>gnl|CDD|185558 PTZ00329, PTZ00329, eukaryotic translation initiation factor 1A;
Provisional.
Length = 155
Score = 27.1 bits (60), Expect = 3.7
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
+ D+ + DD+ D++ D+ + D DD
Sbjct: 124 EGDDGIEFQDDESDEEATDEMLNLTKADIDD 154
Score = 26.3 bits (58), Expect = 6.7
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
+D+ DD + DD+ D++ D+ + + I
Sbjct: 122 DDEGDDGIEFQDDESDEEATDEMLNLTKADI 152
Score = 25.9 bits (57), Expect = 8.2
Identities = 7/35 (20%), Positives = 18/35 (51%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
D+ ++ + DD+ D++ D+ + D D++
Sbjct: 121 FDDEGDDGIEFQDDESDEEATDEMLNLTKADIDDI 155
>gnl|CDD|227931 COG5644, COG5644, Uncharacterized conserved protein [Function
unknown].
Length = 869
Score = 27.7 bits (61), Expect = 3.8
Identities = 11/54 (20%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 5 DGEWWMADDD---NNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRL 55
D E + D N+ + ++ D + + + D D DD++ D ++ ++S
Sbjct: 149 DKENLLESDASSSNDSESEESDSESEIESSDSDHDDENSDSKLDNLRNYIVSLK 202
>gnl|CDD|177633 PHA03397, vlf-1, very late expression factor 1; Provisional.
Length = 363
Score = 27.2 bits (61), Expect = 3.9
Identities = 9/16 (56%), Positives = 14/16 (87%)
Query: 16 NDDDDDDDDDDDDDDD 31
D+ DDDD+++DD+DD
Sbjct: 348 LDESDDDDEEEDDEDD 363
Score = 26.8 bits (60), Expect = 5.3
Identities = 8/16 (50%), Positives = 14/16 (87%)
Query: 15 NNDDDDDDDDDDDDDD 30
++ DDDD+++DD+DD
Sbjct: 348 LDESDDDDEEEDDEDD 363
Score = 26.5 bits (59), Expect = 6.9
Identities = 9/15 (60%), Positives = 14/15 (93%)
Query: 18 DDDDDDDDDDDDDDD 32
D+ DDDD+++DD+DD
Sbjct: 349 DESDDDDEEEDDEDD 363
Score = 26.5 bits (59), Expect = 6.9
Identities = 9/15 (60%), Positives = 14/15 (93%)
Query: 19 DDDDDDDDDDDDDDD 33
D+ DDDD+++DD+DD
Sbjct: 349 DESDDDDEEEDDEDD 363
Score = 26.5 bits (59), Expect = 6.9
Identities = 9/15 (60%), Positives = 14/15 (93%)
Query: 20 DDDDDDDDDDDDDDD 34
D+ DDDD+++DD+DD
Sbjct: 349 DESDDDDEEEDDEDD 363
Score = 26.5 bits (59), Expect = 6.9
Identities = 9/15 (60%), Positives = 14/15 (93%)
Query: 21 DDDDDDDDDDDDDDD 35
D+ DDDD+++DD+DD
Sbjct: 349 DESDDDDEEEDDEDD 363
Score = 26.5 bits (59), Expect = 6.9
Identities = 9/15 (60%), Positives = 14/15 (93%)
Query: 22 DDDDDDDDDDDDDDD 36
D+ DDDD+++DD+DD
Sbjct: 349 DESDDDDEEEDDEDD 363
Score = 26.5 bits (59), Expect = 6.9
Identities = 9/15 (60%), Positives = 14/15 (93%)
Query: 23 DDDDDDDDDDDDDDD 37
D+ DDDD+++DD+DD
Sbjct: 349 DESDDDDEEEDDEDD 363
Score = 26.5 bits (59), Expect = 6.9
Identities = 9/15 (60%), Positives = 14/15 (93%)
Query: 24 DDDDDDDDDDDDDDD 38
D+ DDDD+++DD+DD
Sbjct: 349 DESDDDDEEEDDEDD 363
Score = 26.5 bits (59), Expect = 6.9
Identities = 9/15 (60%), Positives = 14/15 (93%)
Query: 25 DDDDDDDDDDDDDDD 39
D+ DDDD+++DD+DD
Sbjct: 349 DESDDDDEEEDDEDD 363
Score = 26.5 bits (59), Expect = 6.9
Identities = 9/15 (60%), Positives = 14/15 (93%)
Query: 26 DDDDDDDDDDDDDDD 40
D+ DDDD+++DD+DD
Sbjct: 349 DESDDDDEEEDDEDD 363
Score = 26.5 bits (59), Expect = 6.9
Identities = 9/15 (60%), Positives = 14/15 (93%)
Query: 27 DDDDDDDDDDDDDDD 41
D+ DDDD+++DD+DD
Sbjct: 349 DESDDDDEEEDDEDD 363
Score = 26.5 bits (59), Expect = 6.9
Identities = 9/15 (60%), Positives = 14/15 (93%)
Query: 28 DDDDDDDDDDDDDDD 42
D+ DDDD+++DD+DD
Sbjct: 349 DESDDDDEEEDDEDD 363
>gnl|CDD|178493 PLN02905, PLN02905, beta-amylase.
Length = 702
Score = 27.6 bits (61), Expect = 3.9
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 20 DDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLIS 53
++DD+++ D D ++DD D + E I ++S
Sbjct: 13 EEDDEEEMDMDVKEEDDGDRRNREKHIPVTGMVS 46
Score = 27.3 bits (60), Expect = 4.9
Identities = 8/30 (26%), Positives = 19/30 (63%)
Query: 18 DDDDDDDDDDDDDDDDDDDDDDDDDEVIIT 47
++DD+++ D D ++DD D + + + +T
Sbjct: 13 EEDDEEEMDMDVKEEDDGDRRNREKHIPVT 42
>gnl|CDD|218379 pfam05009, EBV-NA3, Epstein-Barr virus nuclear antigen 3 (EBNA-3).
This family contains EBNA-3A, -3B, and -3C which are
latent infection nuclear proteins important for
Epstein-Barr virus (EBV)-induced B-cell immortalisation
and the immune response to EBV infection.
Length = 254
Score = 27.0 bits (60), Expect = 4.1
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 18 DDDDDDDDDDDDDDDDDDDDDDDDDEV 44
+ DDD + + +D + + DD+E+
Sbjct: 208 GEPDDDATVETSSESEDSESESDDEEL 234
Score = 26.2 bits (58), Expect = 9.3
Identities = 6/26 (23%), Positives = 14/26 (53%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDD 42
+ DDD + + +D + + DD++
Sbjct: 208 GEPDDDATVETSSESEDSESESDDEE 233
>gnl|CDD|235626 PRK05853, PRK05853, hypothetical protein; Validated.
Length = 161
Score = 26.7 bits (59), Expect = 4.3
Identities = 10/40 (25%), Positives = 10/40 (25%)
Query: 4 VDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
GE A D D D D DDD
Sbjct: 116 SAGEAPAATGTGAADAADAPASAADSVSDVVDDDAATGHN 155
Score = 26.3 bits (58), Expect = 6.2
Identities = 7/37 (18%), Positives = 11/37 (29%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIIT 47
D D D D DDD + + ++
Sbjct: 124 TGTGAADAADAPASAADSVSDVVDDDAATGHNPLPLS 160
>gnl|CDD|184885 PRK14891, PRK14891, 50S ribosomal protein L24e/unknown domain
fusion protein; Provisional.
Length = 131
Score = 26.5 bits (58), Expect = 4.3
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
A+ + D D+D D+ + D D+ D+++E
Sbjct: 70 AEAAEEAEAADADEDADEAAEADAADEADEEEE 102
Score = 26.5 bits (58), Expect = 4.7
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
A++ D D+D D+ + D D+ D++++ DE
Sbjct: 73 AEEAEAADADEDADEAAEADAADEADEEEETDE 105
Score = 25.7 bits (56), Expect = 8.0
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
A + + + D D+D D+ + D D+ D++E
Sbjct: 69 AAEAAEEAEAADADEDADEAAEADAADEADEEE 101
>gnl|CDD|220830 pfam10637, Ofd1_CTDD, Oxoglutarate and iron-dependent oxygenase
degradation C-term. Ofd1 is a prolyl 4-hydroxylase-like
2-oxoglutarate-Fe(II) dioxygenase that accelerates the
degradation of Sre1N in the presence of oxygen. The
domain is conserved from yeasts to humans. Yeast Sre1 is
the orthologue of mammalian sterol regulatory element
binding protein (SREBP), and it responds to changes in
oxygen-dependent sterol synthesis as an indirect measure
of oxygen availability. However, unlike the prolyl
4-hydroxylases that regulate mammalian hypoxia-inducible
factor, Ofd1 uses multiple domains to regulate Sre1N
degradation by oxygen; the Ofd1 N-terminal dioxygenase
domain is required for oxygen sensing and this Ofd1
C-terminal domain accelerates Sre1N degradation in
yeasts.
Length = 246
Score = 26.9 bits (60), Expect = 4.4
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 24 DDDDDDDDDDDDDDDDDDDEVIIT 47
DD+DD+D DD+DD V++T
Sbjct: 179 GDDEDDEDAAIYRSDDEDDSVLLT 202
>gnl|CDD|221668 pfam12619, MCM2_N, Mini-chromosome maintenance protein 2. This
domain family is found in eukaryotes, and is typically
between 138 and 153 amino acids in length. The family
is found in association with pfam00493. Mini-chromosome
maintenance (MCM) proteins are essential for DNA
replication. These proteins use ATPase activity to
perform this function.
Length = 145
Score = 26.5 bits (59), Expect = 4.7
Identities = 8/28 (28%), Positives = 21/28 (75%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
+D+ D++++ +DD DD D++ ++++D
Sbjct: 1 EDEPDEEEELEDDIDDLDEEAEEEEDGE 28
>gnl|CDD|177798 PLN00208, PLN00208, translation initiation factor (eIF);
Provisional.
Length = 145
Score = 26.7 bits (59), Expect = 5.0
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
N+ D D+++D + DD + +D+D + I
Sbjct: 116 NEGIAGDLDEEEDGEGDDYIEFEDEDIDKI 145
>gnl|CDD|217625 pfam03580, Herpes_UL14, Herpesvirus UL14-like protein. This is a
family of Herpesvirus proteins including UL14. UL14
protein is a minor component of the virion tegument and
is expressed late in infection. UL14 protein can
influence the intracellular localisation patterns of a
number of proteins belonging to the capsid or the DNA
encapsidation machinery.
Length = 149
Score = 26.6 bits (59), Expect = 5.0
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
A+D D +D +D +D DD D D+ DE
Sbjct: 103 AEDALADQEDRLEDAEDSLTLGDDSPDIDELDE 135
>gnl|CDD|216213 pfam00956, NAP, Nucleosome assembly protein (NAP). NAP proteins
are involved in moving histones into the nucleus,
nucleosome assembly and chromatin fluidity. They affect
the transcription of many genes.
Length = 236
Score = 26.9 bits (60), Expect = 5.0
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDDDDEVIIT 47
+ DDDDDDD++ +++ + D + E+I
Sbjct: 191 SPPKVPDDDDDDDEELEEELELDYEIGEIIKD 222
>gnl|CDD|201520 pfam00945, Rhabdo_ncap, Rhabdovirus nucleocapsid protein. The
Nucleocapsid (N) Protein is said to have a "tight"
structure. The carboxyl end of the N-terminal domain
possesses an RNA binding domain. Sequence alignments
show 2 regions of reasonable conservation, approx.
64-103 and 201-329. A whole functional protein is
required for encapsidation to take place.
Length = 406
Score = 27.0 bits (60), Expect = 5.1
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D+ + DDD D+ D DD DDE
Sbjct: 343 DEKKYTEYRDDDGDNTDAPLADDGDDE 369
>gnl|CDD|217940 pfam04177, TAP42, TAP42-like family. The TOR signalling pathway
activates a cell-growth program in response to
nutrients. TIP41 (pfam04176) interacts with TAP42 and
negatively regulates the TOR signaling pathway.
Length = 335
Score = 26.9 bits (60), Expect = 5.2
Identities = 8/17 (47%), Positives = 16/17 (94%)
Query: 27 DDDDDDDDDDDDDDDDE 43
++++DD+DD++DDD+E
Sbjct: 304 AEEEEDDEDDEEDDDEE 320
>gnl|CDD|220356 pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR
loci appear to be mobile elements with a wide host
range. This entry represents proteins that tend to be
found near CRISPR repeats. The species range, so far, is
exclusively bacterial and mesophilic, although CRISPR
loci are particularly common among the archaea and
thermophilic bacteria. Clusters of short DNA repeats
with nonhomologous spacers, which are found at regular
intervals in the genomes of phylogenetically distinct
prokaryotic species, comprise a family with recognisable
features. This family is known as CRISPR (short for
Clustered, Regularly Interspaced Short Palindromic
Repeats). A number of protein families appear only in
association with these repeats and are designated Cas
(CRISPR-Associated) proteins.
Length = 572
Score = 27.2 bits (61), Expect = 5.4
Identities = 11/36 (30%), Positives = 12/36 (33%)
Query: 9 WMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
W +D D DDD DD DD V
Sbjct: 265 WAEASSPVEDPLAATLDFFDDDLKDDPDDAATTQAV 300
>gnl|CDD|236367 PRK09047, PRK09047, RNA polymerase factor sigma-70; Validated.
Length = 161
Score = 26.5 bits (59), Expect = 5.4
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 8 WWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
W +DDDDDDD D + D D+ + D++
Sbjct: 55 WVSLFSSFSDDDDDDDFDPLETLDSADEGAESPADKL 91
>gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal
subunit [Translation, ribosomal structure and
biogenesis].
Length = 591
Score = 27.0 bits (59), Expect = 5.4
Identities = 8/33 (24%), Positives = 19/33 (57%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
++++D + +D + ++DDDDD+E+
Sbjct: 468 TQRHSEEDLVNRFEDVRYEHVAGEEDDDDDEEL 500
Score = 26.6 bits (58), Expect = 8.5
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
M + + ++D + +D + ++DDDDDE
Sbjct: 465 MEETQRHSEEDLVNRFEDVRYEHVAGEEDDDDDE 498
>gnl|CDD|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication,
recombination, and repair].
Length = 1041
Score = 27.0 bits (60), Expect = 5.9
Identities = 30/148 (20%), Positives = 46/148 (31%), Gaps = 21/148 (14%)
Query: 12 DDDNNDDDDDDDD--DDDDDDDDDDDDDDDDDDEVIITCKTLISRLTTQRWLDVGPSWTE 69
D N D + D D + + + +V ++ K L + V +
Sbjct: 47 SVDMNKDPKEATDQVKAVDKHSEIESLNVGMRLDVRLSSKELSDVAVPDDYDMVPDA--- 103
Query: 70 DEHKSAHSSMLYEYRVTCDPHYYGNGCATLCRPRDDSFGHYTCSHTGDRKCLPGWSGDYC 129
E + EY DP + A L R +S C+ T K +Y
Sbjct: 104 -ESPFDLAPPAREYPFELDP-FQQEAIAIL--ERGESV--LVCAPTSSGKT---VVAEYA 154
Query: 130 TKAVQK-------LSPTKALPNRTSRTL 150
+ SP KAL N+ R L
Sbjct: 155 IALALRDGQRVIYTSPIKALSNQKYRDL 182
>gnl|CDD|219240 pfam06957, COPI_C, Coatomer (COPI) alpha subunit C-terminus.
This family represents the C-terminus (approximately
500 residues) of the eukaryotic coatomer alpha subunit.
Coatomer (COPI) is a large cytosolic protein complex
which forms a coat around vesicles budding from the
Golgi apparatus. Such coatomer-coated vesicles have
been proposed to play a role in many distinct steps of
intracellular transport. Note that many family members
also contain the pfam04053 domain.
Length = 421
Score = 26.8 bits (59), Expect = 6.4
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 4 VDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
+ G+ W D D D+D + +D DD++ + D++
Sbjct: 36 MGGDDWGEDADLGLDEDGYLEGEDGLLDDEEGPEGGDEE 74
>gnl|CDD|225753 COG3212, COG3212, Predicted membrane protein [Function unknown].
Length = 144
Score = 26.2 bits (58), Expect = 6.5
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 21 DDDDDDDDDDDDDDDDDDDDDDEVIITCKTLIS 53
D D DDDD D D + + II+ +
Sbjct: 58 DSDGDDDDMDQDAKTKEVQKGESTIISLEEAKE 90
>gnl|CDD|227701 COG5414, COG5414, TATA-binding protein-associated factor
[Transcription].
Length = 392
Score = 26.6 bits (58), Expect = 6.5
Identities = 8/39 (20%), Positives = 21/39 (53%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D E + +N + ++ D D+ ++ ++DD+++E
Sbjct: 293 DKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEE 331
>gnl|CDD|220749 pfam10428, SOG2, RAM signalling pathway protein. SOG2 proteins in
Saccharomyces cerevisiae are involved in cell separation
and cytokinesis.
Length = 419
Score = 26.6 bits (59), Expect = 6.7
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 28 DDDDDDDDDDDDDDDEVIITCKTLIS 53
D DDD+ D ++ V+ C T +S
Sbjct: 77 DSLSDDDEPDPRSNENVVRACLTCVS 102
>gnl|CDD|216194 pfam00922, Phosphoprotein, Vesiculovirus phosphoprotein.
Length = 283
Score = 26.4 bits (58), Expect = 6.8
Identities = 4/28 (14%), Positives = 11/28 (39%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
++ D + + +DD ++V
Sbjct: 51 EELSDSETEPSIEDDQGLYTQLPPAEQV 78
>gnl|CDD|217188 pfam02689, Herpes_Helicase, Helicase. This family consists of
Helicases from the Herpes viruses. Helicases are
responsible for the unwinding of DNA and are essential
for replication and completion of the viral life cycle.
Length = 801
Score = 26.9 bits (60), Expect = 7.0
Identities = 8/42 (19%), Positives = 13/42 (30%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTTQ 58
D+ +D DDD D D++ K +
Sbjct: 537 AAVDESGTEDVLDDDLADFAGLDEESLDPFYLKYEFPPSASS 578
>gnl|CDD|151146 pfam10628, CotE, Outer spore coat protein E (CotE). CotE is a
morphogenic protein that is required for the assembly of
the outer coat of the endospore and spore resistance to
lysozyme. CotE also regulates the expression of cotA,
cotB, cotC and other genes encoding spore outer coat
proteins. The timing of cotE expression has been shown
in Bacillus subtilis to affect spore coat morphology but
not lysozyme resistance.
Length = 182
Score = 26.3 bits (58), Expect = 7.6
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDDDD 42
N D ++DDD++D++ DD+ +D D D
Sbjct: 148 NPDGCEEDDDEEDEEITDDEFEDLDPD 174
Score = 26.3 bits (58), Expect = 7.7
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 15 NNDDDDDDDDDDDDDDDDDDDDDDDDD 41
N D ++DDD++D++ DD+ +D D D
Sbjct: 148 NPDGCEEDDDEEDEEITDDEFEDLDPD 174
>gnl|CDD|224112 COG1191, FliA, DNA-directed RNA polymerase specialized sigma
subunit [Transcription].
Length = 247
Score = 26.5 bits (59), Expect = 7.7
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRL 55
D+D DDDDD DD ++ DD + +E++ K I L
Sbjct: 159 DEDVLKDDDDDVDDQIENPDDGVEKEELLEILKEAIEPL 197
>gnl|CDD|220815 pfam10577, UPF0560, Uncharacterized protein family UPF0560. This
family of proteins has no known function.
Length = 805
Score = 26.8 bits (59), Expect = 7.8
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 13 DDNNDDDDDDDDDDDDDDDDD 33
+D+ DDDD DD +D
Sbjct: 768 RRGRRPEDELDDDDGDDAGED 788
Score = 26.4 bits (58), Expect = 8.3
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 14 DNNDDDDDDDDDDDDDDDDDD 34
+D+ DDDD DD +D
Sbjct: 768 RRGRRPEDELDDDDGDDAGED 788
>gnl|CDD|220068 pfam08911, NUP50, NUP50 (Nucleoporin 50 kDa). Nucleoporin 50 kDa
(NUP50) acts as a cofactor for the
importin-alpha:importin-beta heterodimer, which in turn
allows for transportation of many nuclear-targeted
proteins through nuclear pore complexes. The C terminus
of NUP50 binds importin-beta through RAN-GTP, the N
terminus binds the C terminus of importin-alpha, while
a central domain binds importin-beta.
NUP50:importin-alpha:importin-beta then binds cargo and
can stimulate nuclear import. The N-terminal domain of
NUP50 is also able to actively displace nuclear
localisation signals from importin-alpha.
Length = 66
Score = 25.0 bits (55), Expect = 7.9
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 11 ADDDNNDDDDDDDDDDDD 28
AD D+ D++DD ++
Sbjct: 5 ADKQLTRDNWDEEDDPEE 22
>gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional.
Length = 668
Score = 26.5 bits (59), Expect = 8.0
Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 12/43 (27%)
Query: 12 DDDNNDDDDDDDDDDDDDDDD------------DDDDDDDDDD 42
D+ DD DDD D+ DDD DDDDD
Sbjct: 624 KDELFSDDYWDDDPWDNPMRRRDRGGRRSRNRRDDDPWDDDDD 666
>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular
trafficking and secretion].
Length = 610
Score = 26.5 bits (58), Expect = 8.1
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ + DD+ D++D + D D E
Sbjct: 577 VGELKSTCDDEVFVGDEEDLSRYVEKDTDTKVE 609
>gnl|CDD|215494 PLN02915, PLN02915, cellulose synthase A [UDP-forming], catalytic
subunit.
Length = 1044
Score = 26.4 bits (58), Expect = 8.3
Identities = 11/52 (21%), Positives = 23/52 (44%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTTQRWLDVGPSWT 68
DD++ +D DD +D+ D + + + Q+W GP+++
Sbjct: 79 DDEEGNDMDDFEDEFQIKSPQDHEPVHQNVFAGSENGDYNAQQWRPGGPAFS 130
>gnl|CDD|147776 pfam05804, KAP, Kinesin-associated protein (KAP). This family
consists of several eukaryotic kinesin-associated (KAP)
proteins. Kinesins are intracellular multimeric
transport motor proteins that move cellular cargo on
microtubule tracks. It has been shown that the sea
urchin KRP85/95 holoenzyme associates with a KAP115
non-motor protein, forming a heterotrimeric complex in
vitro, called the Kinesin-II.
Length = 708
Score = 26.4 bits (58), Expect = 8.3
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDD 41
DDD+ D D+D + D D D+ D D
Sbjct: 675 DDDSEQVDYGDEDFEADLKFDYYDEGDILD 704
>gnl|CDD|204999 pfam12661, hEGF, Human growth factor-like EGF. hEGF, or human
growth factor-like EGF, domains have six conserved
residues disulfide-bonded into the characteristic
'ababcc' pattern. They are involved in growth and
proliferation of cells, in proteins of the Notch/Delta
pathway, neurogulin and selectins. hEGFs are also found
in mosaic proteins with four-disulfide laminin EGFs such
as aggrecan and perlecan. The core fold of the EGF
domain consists of two small beta-hairpins packed
against each other. Two major structural variants have
been identified based on the structural context of the
C-terminal Cys residue of disulfide 'c' in the
C-terminal hairpin: hEGFs and cEGFs. In hEGFs the
C-terminal thiol resides in the beta-turn, resulting in
shorter loop-lengths between the Cys residues of
disulfide 'c', typically C[8-9]XC. These shorter
loop-lengths are also typical of the four-disulfide EGF
domains, laminin ad integrin. Tandem hEGF domains have
six linking residues between terminal cysteines of
adjacent domains. hEGF domains may or may not bind
calcium in the linker region. hEGF domains with the
consensus motif CXD4X[F,Y]XCXC are hydroxylated
exclusively in the Asp residue.
Length = 13
Score = 23.8 bits (53), Expect = 8.4
Identities = 5/10 (50%), Positives = 7/10 (70%)
Query: 120 CLPGWSGDYC 129
C PG++G C
Sbjct: 4 CPPGYTGPRC 13
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.136 0.455
Gapped
Lambda K H
0.267 0.0696 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,790,574
Number of extensions: 790137
Number of successful extensions: 10594
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5876
Number of HSP's successfully gapped: 1363
Length of query: 166
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 76
Effective length of database: 6,945,742
Effective search space: 527876392
Effective search space used: 527876392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.0 bits)