RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10880
(166 letters)
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 68.2 bits (167), Expect = 3e-15
Identities = 29/58 (50%), Positives = 36/58 (62%)
Query: 76 HSSMLYEYRVTCDPHYYGNGCATLCRPRDDSFGHYTCSHTGDRKCLPGWSGDYCTKAV 133
H S+ VTCD +YYG GC CRPRDD FGHY C G++ C+ GW G C +A+
Sbjct: 10 HGSIEGRSAVTCDDYYYGFGCNKFCRPRDDFFGHYACDQNGNKTCMEGWMGPECNRAI 67
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A
{Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Length = 417
Score = 47.2 bits (111), Expect = 5e-07
Identities = 12/33 (36%), Positives = 24/33 (72%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
A + ++D+++ D+D+D+++DDD +DDD E
Sbjct: 364 ALEFEFEEDEEEADEDEDEEEDDDHGLEDDDGE 396
Score = 47.2 bits (111), Expect = 5e-07
Identities = 10/32 (31%), Positives = 23/32 (71%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ + +D+++ D+D+D+++DDD +DDD +
Sbjct: 366 EFEFEEDEEEADEDEDEEEDDDHGLEDDDGES 397
Score = 47.2 bits (111), Expect = 5e-07
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ + D+++ D+D+D+++DDD +DDD +
Sbjct: 365 LEFEFEEDEEEADEDEDEEEDDDHGLEDDDGESA 398
Score = 47.2 bits (111), Expect = 5e-07
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 6 GEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
G + + ++++ D+D+D+++DDD +DDD + E
Sbjct: 362 GAALEFEFEEDEEEADEDEDEEEDDDHGLEDDDGESAE 399
Score = 45.3 bits (106), Expect = 2e-06
Identities = 10/37 (27%), Positives = 25/37 (67%)
Query: 7 EWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+W+ + ++D+++ D+D+D+++DDD +DD+
Sbjct: 358 DWFTGAALEFEFEEDEEEADEDEDEEEDDDHGLEDDD 394
Score = 44.5 bits (104), Expect = 5e-06
Identities = 10/32 (31%), Positives = 23/32 (71%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
++D + D+D+D+++DDD +DDD + +++
Sbjct: 370 EEDEEEADEDEDEEEDDDHGLEDDDGESAEEQ 401
Score = 44.5 bits (104), Expect = 5e-06
Identities = 10/32 (31%), Positives = 22/32 (68%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+D+ D+D+D+++DDD +DDD + ++ +
Sbjct: 371 EDEEEADEDEDEEEDDDHGLEDDDGESAEEQD 402
Score = 44.5 bits (104), Expect = 5e-06
Identities = 10/32 (31%), Positives = 23/32 (71%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+++ ++ D+D+D+++DDD +DDD + +E
Sbjct: 369 FEEDEEEADEDEDEEEDDDHGLEDDDGESAEE 400
Score = 44.2 bits (103), Expect = 6e-06
Identities = 11/32 (34%), Positives = 23/32 (71%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D++ D+D+D+++DDD +DDD + ++ D+
Sbjct: 372 DEEEADEDEDEEEDDDHGLEDDDGESAEEQDD 403
Score = 43.4 bits (101), Expect = 9e-06
Identities = 10/32 (31%), Positives = 23/32 (71%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+++ ++D+D+++DDD +DDD + ++ DD
Sbjct: 373 EEEADEDEDEEEDDDHGLEDDDGESAEEQDDF 404
Score = 41.8 bits (97), Expect = 4e-05
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
++ + D+D+++DDD +DDD + ++ DD
Sbjct: 374 EEADEDEDEEEDDDHGLEDDDGESAEEQDDFA 405
Score = 40.7 bits (94), Expect = 8e-05
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCK 49
+D++ ++DDD +DDD + ++ DD E CK
Sbjct: 378 EDEDEEEDDDHGLEDDDGESAEEQDDFAGRPEQAPECK 415
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone
chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A
{Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A
3c9b_A 3q33_B* 3q35_B* 3dm7_A
Length = 264
Score = 42.0 bits (98), Expect = 2e-05
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+D+ + D D +DDD + D DE
Sbjct: 224 EDEEGESGLSADGDSEDDDGSLGEVDLPLSDE 255
Score = 40.9 bits (95), Expect = 6e-05
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D ++ + + D D +DDD + D
Sbjct: 221 RDLEDEEGESGLSADGDSEDDDGSLGEVDLPLS 253
Score = 40.9 bits (95), Expect = 6e-05
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D++ D D +DDD + D D+E
Sbjct: 225 DEEGESGLSADGDSEDDDGSLGEVDLPLSDEE 256
Score = 40.5 bits (94), Expect = 8e-05
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+D + D D +DDD + D +
Sbjct: 221 RDLEDEEGESGLSADGDSEDDDGSLGEVDLPLSD 254
Score = 39.7 bits (92), Expect = 1e-04
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
A D D++ + D D +DDD + D +
Sbjct: 218 EAQRDLEDEEGESGLSADGDSEDDDGSLGEVDLPL 252
Score = 39.3 bits (91), Expect = 2e-04
Identities = 7/37 (18%), Positives = 17/37 (45%)
Query: 7 EWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+++ + +D++ + D D +DDD + D
Sbjct: 214 KYYAEAQRDLEDEEGESGLSADGDSEDDDGSLGEVDL 250
Score = 38.2 bits (88), Expect = 6e-04
Identities = 7/36 (19%), Positives = 18/36 (50%)
Query: 9 WMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
+ A+ + +D++ + D D +DDD + ++
Sbjct: 215 YYAEAQRDLEDEEGESGLSADGDSEDDDGSLGEVDL 250
Score = 37.0 bits (85), Expect = 0.001
Identities = 7/38 (18%), Positives = 15/38 (39%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
+ + ++ D D +DDD + D D++
Sbjct: 220 QRDLEDEEGESGLSADGDSEDDDGSLGEVDLPLSDEEP 257
>3h0g_F DNA-directed RNA polymerases I, II, and III subunit rpabc2;
transcription, multi-protein complex, DNA- binding,
magnesium; 3.65A {Schizosaccharomyces pombe}
Length = 142
Score = 39.3 bits (91), Expect = 1e-04
Identities = 5/37 (13%), Positives = 18/37 (48%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
M+D + ++ D +++ D+ + D++ + +
Sbjct: 1 MSDYEEDEAFGMDGAVMEEEVDELEMIDENGQSQQGV 37
Score = 32.0 bits (72), Expect = 0.037
Identities = 3/33 (9%), Positives = 11/33 (33%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ D +++ D+ + D++
Sbjct: 7 DEAFGMDGAVMEEEVDELEMIDENGQSQQGVSH 39
Score = 32.0 bits (72), Expect = 0.044
Identities = 4/32 (12%), Positives = 11/32 (34%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D +++ D+ + D++ E
Sbjct: 11 GMDGAVMEEEVDELEMIDENGQSQQGVSHPGE 42
Score = 31.6 bits (71), Expect = 0.053
Identities = 3/35 (8%), Positives = 12/35 (34%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
D +++ D+ + D++ + +
Sbjct: 13 DGAVMEEEVDELEMIDENGQSQQGVSHPGEPSTTV 47
Score = 31.6 bits (71), Expect = 0.055
Identities = 3/35 (8%), Positives = 11/35 (31%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
D +++ D+ + D++ +
Sbjct: 12 MDGAVMEEEVDELEMIDENGQSQQGVSHPGEPSTT 46
Score = 30.4 bits (68), Expect = 0.13
Identities = 4/36 (11%), Positives = 12/36 (33%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIIT 47
++ D+ + D++ + +IT
Sbjct: 14 GAVMEEEVDELEMIDENGQSQQGVSHPGEPSTTVIT 49
Score = 27.0 bits (59), Expect = 2.1
Identities = 3/52 (5%), Positives = 14/52 (26%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTTQRWLD 62
A + D+ + D++ + + + + + +
Sbjct: 15 AVMEEEVDELEMIDENGQSQQGVSHPGEPSTTVITEDVASSKTAQSGKAVAK 66
Score = 26.6 bits (58), Expect = 3.3
Identities = 5/42 (11%), Positives = 13/42 (30%)
Query: 3 MVDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
+DG + D + D++ + ++V
Sbjct: 11 GMDGAVMEEEVDELEMIDENGQSQQGVSHPGEPSTTVITEDV 52
>3ay5_A Cyclin-D1-binding protein 1; dominant-negative helix-loop-helix
transcriptional regulator cycle; 2.50A {Homo sapiens}
Length = 360
Score = 39.5 bits (91), Expect = 2e-04
Identities = 5/37 (13%), Positives = 17/37 (45%)
Query: 7 EWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ D + +D ++++ D+ + +DD ++
Sbjct: 193 QAVEESDPYSGLLNDTEENNSDNHNHEDDVLGFPSNQ 229
>1rm1_C Transcription initiation factor IIA large chain; yeast TFIIA, TBP
protein, ATA-box DNA, transcription/DNA complex; 2.50A
{Saccharomyces cerevisiae}
Length = 286
Score = 39.1 bits (89), Expect = 2e-04
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTTQRW 60
+ D+ + DD DDD + ++D DE ++ C T RW
Sbjct: 210 SALLDTDEVGSELDDSDDDYLISEGEEDGPDENLMLCLYDKVTRTKARW 258
Score = 35.3 bits (79), Expect = 0.006
Identities = 8/34 (23%), Positives = 11/34 (32%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
+ D D+ + DD DDD E
Sbjct: 201 KLQAKKEKRSALLDTDEVGSELDDSDDDYLISEG 234
Score = 34.9 bits (78), Expect = 0.007
Identities = 9/41 (21%), Positives = 14/41 (34%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLI 52
D D+ + DD DDD + E + L+
Sbjct: 204 AKKEKRSALLDTDEVGSELDDSDDDYLISEGEEDGPDENLM 244
Score = 34.9 bits (78), Expect = 0.007
Identities = 7/34 (20%), Positives = 10/34 (29%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D D+ + DD DDD +
Sbjct: 201 KLQAKKEKRSALLDTDEVGSELDDSDDDYLISEG 234
Score = 34.5 bits (77), Expect = 0.009
Identities = 9/43 (20%), Positives = 16/43 (37%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLIS 53
A + D D+ + DD DDD + +E ++
Sbjct: 204 AKKEKRSALLDTDEVGSELDDSDDDYLISEGEEDGPDENLMLC 246
Score = 33.7 bits (75), Expect = 0.016
Identities = 7/33 (21%), Positives = 10/33 (30%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ D D+ + DD DDD
Sbjct: 200 VKLQAKKEKRSALLDTDEVGSELDDSDDDYLIS 232
Score = 33.3 bits (74), Expect = 0.028
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDD 38
D+ ++ DD DDD + ++D D++
Sbjct: 209 RSALLDTDEVGSELDDSDDDYLISEGEEDGPDEN 242
Score = 32.2 bits (71), Expect = 0.063
Identities = 7/33 (21%), Positives = 10/33 (30%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ D D+ + DD DDD
Sbjct: 199 QVKLQAKKEKRSALLDTDEVGSELDDSDDDYLI 231
Score = 32.2 bits (71), Expect = 0.064
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ + D D+ + DD DDD
Sbjct: 197 IEQVKLQAKKEKRSALLDTDEVGSELDDSDDDY 229
Score = 31.4 bits (69), Expect = 0.10
Identities = 7/34 (20%), Positives = 11/34 (32%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ + D D+ + DD DDD
Sbjct: 197 IEQVKLQAKKEKRSALLDTDEVGSELDDSDDDYL 230
Score = 31.4 bits (69), Expect = 0.12
Identities = 6/33 (18%), Positives = 11/33 (33%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
+ + D D+ + DD DD+
Sbjct: 197 IEQVKLQAKKEKRSALLDTDEVGSELDDSDDDY 229
>3k8p_C DSL1, KLLA0C02695P; intracellular trafficking, DSL1 complex,
multisubunit tethering complex, snare proteins; 2.60A
{Kluyveromyces lactis}
Length = 357
Score = 39.3 bits (91), Expect = 2e-04
Identities = 11/92 (11%), Positives = 31/92 (33%), Gaps = 6/92 (6%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIIT-----CKTLISRLTTQR 59
+ + D + +++ D D+ D D++ D D D+ + ++ + +
Sbjct: 57 EKKTENGKDTESWGWNENQDSDEHDGWDEELDIDVDNVPIQVSVFVQSAAKVFTEFEQGC 116
Query: 60 WLDVGPSWTEDEHKSAHSSMLYEYRVTCDPHY 91
+G S E + + + +
Sbjct: 117 -DTIGRSKVESIYLYKFNLLQTAFFAMVSEKV 147
Score = 35.1 bits (80), Expect = 0.007
Identities = 4/32 (12%), Positives = 13/32 (40%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D + ++ D + +++ D D+ +
Sbjct: 50 KQDLELSEKKTENGKDTESWGWNENQDSDEHD 81
Score = 34.7 bits (79), Expect = 0.010
Identities = 5/32 (15%), Positives = 13/32 (40%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D + ++ D + +++ D D+ D
Sbjct: 51 QDLELSEKKTENGKDTESWGWNENQDSDEHDG 82
Score = 34.3 bits (78), Expect = 0.014
Identities = 5/32 (15%), Positives = 15/32 (46%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D + ++ ++ D + +++ D D+ D
Sbjct: 52 DLELSEKKTENGKDTESWGWNENQDSDEHDGW 83
Score = 32.4 bits (73), Expect = 0.057
Identities = 3/33 (9%), Positives = 14/33 (42%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ + + + ++ D + +++ D D+
Sbjct: 48 GEKQDLELSEKKTENGKDTESWGWNENQDSDEH 80
Score = 30.8 bits (69), Expect = 0.19
Identities = 3/35 (8%), Positives = 12/35 (34%)
Query: 9 WMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ D + + ++ D + +++ D
Sbjct: 43 GKYEKGEKQDLELSEKKTENGKDTESWGWNENQDS 77
>3o4z_A Telomere length regulation protein TEL2; heat like helical repeats,
protein binding; 3.10A {Saccharomyces cerevisiae}
Length = 647
Score = 39.0 bits (90), Expect = 4e-04
Identities = 5/40 (12%), Positives = 11/40 (27%)
Query: 3 MVDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
M + + D + + + + DD D
Sbjct: 345 MFIAKLLSGGHLKYESDFKINIPNVKFESNSDDKIIDFQS 384
Score = 37.4 bits (86), Expect = 0.001
Identities = 4/34 (11%), Positives = 12/34 (35%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
+ + D + + + + DD D + +
Sbjct: 352 SGGHLKYESDFKINIPNVKFESNSDDKIIDFQSL 385
Score = 36.7 bits (84), Expect = 0.002
Identities = 4/36 (11%), Positives = 12/36 (33%)
Query: 9 WMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
++ + D + + + + DD D +
Sbjct: 350 LLSGGHLKYESDFKINIPNVKFESNSDDKIIDFQSL 385
Score = 35.9 bits (82), Expect = 0.004
Identities = 4/34 (11%), Positives = 11/34 (32%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
+ + D + + + + DD D +
Sbjct: 352 SGGHLKYESDFKINIPNVKFESNSDDKIIDFQSL 385
Score = 32.8 bits (74), Expect = 0.040
Identities = 4/34 (11%), Positives = 11/34 (32%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+A + + D + + + + DD
Sbjct: 347 IAKLLSGGHLKYESDFKINIPNVKFESNSDDKII 380
Score = 31.7 bits (71), Expect = 0.091
Identities = 7/47 (14%), Positives = 15/47 (31%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTTQ 58
D + + + + DD D + + I+ K L+
Sbjct: 360 SDFKINIPNVKFESNSDDKIIDFQSLKREIVKRIVFLKDLMKEYEKT 406
Score = 31.7 bits (71), Expect = 0.11
Identities = 4/34 (11%), Positives = 10/34 (29%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
M + D + + + + DD+
Sbjct: 345 MFIAKLLSGGHLKYESDFKINIPNVKFESNSDDK 378
Score = 31.7 bits (71), Expect = 0.12
Identities = 4/30 (13%), Positives = 10/30 (33%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDD 41
+ D + + + + DD D +
Sbjct: 359 ESDFKINIPNVKFESNSDDKIIDFQSLKRE 388
Score = 27.8 bits (61), Expect = 1.8
Identities = 4/41 (9%), Positives = 12/41 (29%)
Query: 19 DDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTTQR 59
+ D + + + + + I + R +R
Sbjct: 352 SGGHLKYESDFKINIPNVKFESNSDDKIIDFQSLKREIVKR 392
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger,
ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Length = 1230
Score = 38.9 bits (89), Expect = 4e-04
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 1 MMMVDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
+ D + D+D +++ D D DDDD DD+ DDDD
Sbjct: 304 YLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDM 345
Score = 38.5 bits (88), Expect = 5e-04
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 9 WMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ DD++ D++ D D DDDD DD+ DDDD
Sbjct: 311 YNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDM 345
Score = 35.8 bits (81), Expect = 0.005
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
+ D N + DD+D+D++ D D DDDD DDE
Sbjct: 305 LTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSD 341
Score = 35.5 bits (80), Expect = 0.007
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
D+D N D D DDDD DD+ DDDD +V
Sbjct: 316 EDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKV 349
Score = 35.1 bits (79), Expect = 0.008
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
DD ++D++ D D DDDD DD+ DDD++
Sbjct: 313 YDDEDEDENAMDADGGDDDDQGSDDEYSDDDDM 345
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma
factor, transcription regulation; 2.60A {Escherichia
coli} SCOP: a.177.1.1
Length = 339
Score = 38.3 bits (89), Expect = 5e-04
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
A ++ +D DDD+D+D++D DDD DDD I
Sbjct: 69 ATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSI 103
Score = 37.6 bits (87), Expect = 9e-04
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLT 56
+ +D DDD+D+D++D DDD DD+ I + +
Sbjct: 68 TATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFA 113
Score = 37.2 bits (86), Expect = 0.001
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
A++D + +D DDD+D+D++D +
Sbjct: 60 NAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDD 94
Score = 36.4 bits (84), Expect = 0.002
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ + +D DDD+D+D++D DDD D+
Sbjct: 66 APTATHVGSELSQEDLDDDEDEDEEDGDDDSADD 99
Score = 36.4 bits (84), Expect = 0.002
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
A + + +D DDD+D+D++D DDD +
Sbjct: 66 APTATHVGSELSQEDLDDDEDEDEEDGDDDSADD 99
Score = 36.0 bits (83), Expect = 0.003
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D + +D DDD+D+D++D DD+
Sbjct: 64 DLAPTATHVGSELSQEDLDDDEDEDEEDGDDD 95
Score = 35.6 bits (82), Expect = 0.004
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 4 VDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
VD + +D DDD+D+D++D DDD
Sbjct: 57 VDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDS 96
Score = 35.3 bits (81), Expect = 0.006
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ +D DDD+D+D++D DDD
Sbjct: 65 LAPTATHVGSELSQEDLDDDEDEDEEDGDDDSA 97
Score = 33.7 bits (77), Expect = 0.021
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D N ++D + +D DDD+DE
Sbjct: 56 FVDPNAEEDLAPTATHVGSELSQEDLDDDEDE 87
Score = 31.8 bits (72), Expect = 0.085
Identities = 10/50 (20%), Positives = 23/50 (46%), Gaps = 9/50 (18%)
Query: 3 MVDGEWWMADDDNNDDDDDDDDD---------DDDDDDDDDDDDDDDDDE 43
+ E ++D D + ++D + +D DDD+D+D+++
Sbjct: 42 VEAEEARLSDLITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEED 91
>3fs3_A Nucleosome assembly protein 1, putative; protein localization,
histone recognition, structural analysis, CHA; 2.30A
{Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A
Length = 359
Score = 38.4 bits (88), Expect = 6e-04
Identities = 3/35 (8%), Positives = 14/35 (40%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
+ ++N D D +++ + + + ++
Sbjct: 294 IESESNSIVSDVDSSYSSSENNSNYNSYESNNSAY 328
Score = 38.0 bits (87), Expect = 6e-04
Identities = 3/35 (8%), Positives = 14/35 (40%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
+ + N+ D D +++ + + + ++
Sbjct: 294 IESESNSIVSDVDSSYSSSENNSNYNSYESNNSAY 328
Score = 37.6 bits (86), Expect = 8e-04
Identities = 2/33 (6%), Positives = 12/33 (36%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ ++ D D +++ + + + +
Sbjct: 293 IIESESNSIVSDVDSSYSSSENNSNYNSYESNN 325
Score = 37.2 bits (85), Expect = 0.001
Identities = 2/37 (5%), Positives = 15/37 (40%)
Query: 7 EWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
++++ ++ + D D +++ + + +
Sbjct: 287 DYYLGIIIESESNSIVSDVDSSYSSSENNSNYNSYES 323
Score = 36.8 bits (84), Expect = 0.002
Identities = 3/38 (7%), Positives = 15/38 (39%)
Query: 6 GEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
G ++ ++ D D +++ + + + ++
Sbjct: 291 GIIIESESNSIVSDVDSSYSSSENNSNYNSYESNNSAY 328
Score = 34.9 bits (79), Expect = 0.007
Identities = 2/32 (6%), Positives = 11/32 (34%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ D D +++ + + + ++
Sbjct: 298 SNSIVSDVDSSYSSSENNSNYNSYESNNSAYN 329
Score = 34.5 bits (78), Expect = 0.010
Identities = 3/43 (6%), Positives = 19/43 (44%)
Query: 1 MMMVDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
++++ E D + +++ + + + ++ +D++
Sbjct: 291 GIIIESESNSIVSDVDSSYSSSENNSNYNSYESNNSAYNDENS 333
Score = 34.5 bits (78), Expect = 0.011
Identities = 2/37 (5%), Positives = 12/37 (32%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLIS 53
+ + + D D +++ + + + +
Sbjct: 293 IIESESNSIVSDVDSSYSSSENNSNYNSYESNNSAYN 329
Score = 33.8 bits (76), Expect = 0.021
Identities = 2/32 (6%), Positives = 15/32 (46%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D ++ +++ + + + ++ +D++
Sbjct: 303 SDVDSSYSSSENNSNYNSYESNNSAYNDENSN 334
Score = 33.0 bits (74), Expect = 0.038
Identities = 3/34 (8%), Positives = 19/34 (55%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
++D D++ +++ + + + ++ +D++ +
Sbjct: 302 VSDVDSSYSSSENNSNYNSYESNNSAYNDENSNV 335
Score = 30.7 bits (68), Expect = 0.22
Identities = 2/34 (5%), Positives = 16/34 (47%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
++ +++ + + + ++ +D++ + D
Sbjct: 307 SSYSSSENNSNYNSYESNNSAYNDENSNVDTNEY 340
Score = 30.7 bits (68), Expect = 0.22
Identities = 3/32 (9%), Positives = 16/32 (50%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D + +++ + + + ++ +D++ + D
Sbjct: 306 DSSYSSSENNSNYNSYESNNSAYNDENSNVDT 337
Score = 30.3 bits (67), Expect = 0.28
Identities = 2/32 (6%), Positives = 16/32 (50%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D + +++ + + + ++ +D++ + +
Sbjct: 305 VDSSYSSSENNSNYNSYESNNSAYNDENSNVD 336
Score = 26.1 bits (56), Expect = 6.7
Identities = 1/34 (2%), Positives = 8/34 (23%)
Query: 8 WWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDD 41
+ + + + + + D +
Sbjct: 239 HFFTSHKVPNSNVIKQLSKHEVAQLEMIIEGDYE 272
>1qkl_A RPB6, DNA-directed RNA polymerase II 14.4 KD polypeptide;
transcription; NMR {Homo sapiens} SCOP: a.143.1.2
Length = 127
Score = 36.9 bits (85), Expect = 7e-04
Identities = 12/36 (33%), Positives = 25/36 (69%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
M+D+++N D DD DD ++D+ DD ++ +++ E +
Sbjct: 1 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENV 36
Score = 33.8 bits (77), Expect = 0.009
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISR 54
+N+D+ D DD DD ++D+ DD ++ ++E + L S
Sbjct: 2 SDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSG 42
Score = 27.2 bits (60), Expect = 1.4
Identities = 7/30 (23%), Positives = 19/30 (63%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDD 41
D D+ DD ++D+ DD ++ +++ ++ +
Sbjct: 9 DGDDFDDVEEDEGLDDLENAEEEGQENVEI 38
Score = 26.9 bits (59), Expect = 2.3
Identities = 9/41 (21%), Positives = 21/41 (51%)
Query: 3 MVDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
M D E DD +D ++D+ DD ++ +++ ++ +
Sbjct: 1 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPS 41
>1twf_F ABC23, DNA-directed RNA polymerases I, II, and III 23 KD
polypeptide; transcription, mRNA, multiprotein complex;
HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP:
a.143.1.2 PDB: 1i3q_F 1i6h_F 1k83_F* 1nik_F 1nt9_F
1pqv_F 1r5u_F 1r9s_F* 1r9t_F* 1sfo_F* 1twa_F* 1twc_F*
1i50_F* 1twg_F* 1twh_F* 1wcm_F 1y1v_F 1y1w_F 1y1y_F
1y77_F* ...
Length = 155
Score = 36.6 bits (84), Expect = 0.001
Identities = 6/34 (17%), Positives = 19/34 (55%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
M+D + +D +++ +D D + D++ ++ +
Sbjct: 1 MSDYEEAFNDGNENFEDFDVEHFSDEETYEEKPQ 34
Score = 35.4 bits (81), Expect = 0.003
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 3 MVDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
M D E D + N +D D + D++ ++ D +
Sbjct: 1 MSDYEEAFNDGNENFEDFDVEHFSDEETYEEKPQFKDGETT 41
Score = 33.9 bits (77), Expect = 0.009
Identities = 4/35 (11%), Positives = 15/35 (42%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
+D + + D++ ++ D + D + ++
Sbjct: 16 EDFDVEHFSDEETYEEKPQFKDGETTDANGKTIVT 50
Score = 33.9 bits (77), Expect = 0.009
Identities = 6/36 (16%), Positives = 17/36 (47%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIIT 47
+D + + D++ ++ D + D + + I+T
Sbjct: 15 FEDFDVEHFSDEETYEEKPQFKDGETTDANGKTIVT 50
Score = 32.7 bits (74), Expect = 0.025
Identities = 5/36 (13%), Positives = 15/36 (41%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIIT 47
+ ++ D + D++ ++ D + D + I
Sbjct: 14 NFEDFDVEHFSDEETYEEKPQFKDGETTDANGKTIV 49
Score = 30.8 bits (69), Expect = 0.12
Identities = 5/27 (18%), Positives = 15/27 (55%)
Query: 18 DDDDDDDDDDDDDDDDDDDDDDDDDEV 44
D ++ +D +++ +D D + D++
Sbjct: 3 DYEEAFNDGNENFEDFDVEHFSDEETY 29
Score = 30.4 bits (68), Expect = 0.15
Identities = 6/27 (22%), Positives = 15/27 (55%)
Query: 19 DDDDDDDDDDDDDDDDDDDDDDDDEVI 45
D ++ +D +++ +D D + D+E
Sbjct: 3 DYEEAFNDGNENFEDFDVEHFSDEETY 29
Score = 30.4 bits (68), Expect = 0.17
Identities = 4/34 (11%), Positives = 12/34 (35%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+D++ ++ D + D + + E
Sbjct: 23 FSDEETYEEKPQFKDGETTDANGKTIVTGGNGPE 56
Score = 30.4 bits (68), Expect = 0.18
Identities = 8/72 (11%), Positives = 22/72 (30%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTTQRWLDVGPSWTEDE 71
D ++ D++ ++ D + D + + +R + +D+
Sbjct: 19 DVEHFSDEETYEEKPQFKDGETTDANGKTIVTGGNGPEDFQQHEQIRRKTLKEKAIPKDQ 78
Query: 72 HKSAHSSMLYEY 83
+ YE
Sbjct: 79 RATTPYMTKYER 90
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein
transport importin, transportin, transport protein;
2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A
2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Length = 852
Score = 37.1 bits (85), Expect = 0.002
Identities = 7/34 (20%), Positives = 10/34 (29%)
Query: 18 DDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTL 51
D D D + DD D + + L
Sbjct: 312 DIDIILLKGDVEGGSGGDDTISDWNLRKCSAAAL 345
Score = 37.1 bits (85), Expect = 0.002
Identities = 7/39 (17%), Positives = 10/39 (25%)
Query: 19 DDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTT 57
D D D + DD D + + L
Sbjct: 312 DIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLAN 350
Score = 35.9 bits (82), Expect = 0.004
Identities = 6/26 (23%), Positives = 8/26 (30%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDD 42
D D D + DD D +
Sbjct: 312 DIDIILLKGDVEGGSGGDDTISDWNL 337
Score = 35.9 bits (82), Expect = 0.004
Identities = 5/39 (12%), Positives = 12/39 (30%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRL 55
D D + DD D + + +++ +
Sbjct: 313 IDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANV 351
Score = 35.2 bits (80), Expect = 0.007
Identities = 7/62 (11%), Positives = 13/62 (20%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTTQRWLDVGPSWTED 70
+D D D + DD D + + + L +
Sbjct: 311 SDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFH 370
Query: 71 EH 72
Sbjct: 371 HE 372
Score = 34.4 bits (78), Expect = 0.012
Identities = 6/30 (20%), Positives = 9/30 (30%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDD 39
M D + D + DD D +
Sbjct: 308 MKYSDIDIILLKGDVEGGSGGDDTISDWNL 337
Score = 33.6 bits (76), Expect = 0.025
Identities = 7/35 (20%), Positives = 13/35 (37%)
Query: 2 MMVDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDD 36
++V+G + D D + DD D +
Sbjct: 303 VLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNL 337
Score = 31.3 bits (70), Expect = 0.15
Identities = 6/30 (20%), Positives = 9/30 (30%)
Query: 1 MMMVDGEWWMADDDNNDDDDDDDDDDDDDD 30
M D + + D DD D +
Sbjct: 308 MKYSDIDIILLKGDVEGGSGGDDTISDWNL 337
Score = 29.4 bits (65), Expect = 0.58
Identities = 4/31 (12%), Positives = 8/31 (25%)
Query: 1 MMMVDGEWWMADDDNNDDDDDDDDDDDDDDD 31
M + + + DD D +
Sbjct: 307 GMKYSDIDIILLKGDVEGGSGGDDTISDWNL 337
>1nvp_C Transcription initiation factor IIA beta chain; transcription
regulation, DNA, complex, transcription/DNA complex;
2.10A {Homo sapiens} SCOP: b.56.1.1
Length = 76
Score = 34.2 bits (78), Expect = 0.003
Identities = 8/47 (17%), Positives = 21/47 (44%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTTQRW 60
D +++ + +DD D++ + D E ++ C+ + +W
Sbjct: 3 GAEDGQVEEEPLNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNKW 49
Score = 31.1 bits (70), Expect = 0.032
Identities = 4/28 (14%), Positives = 14/28 (50%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ +D +++ + +DD D++ +
Sbjct: 2 SGAEDGQVEEEPLNSEDDVSDEEGQELF 29
Score = 30.7 bits (69), Expect = 0.049
Identities = 6/30 (20%), Positives = 17/30 (56%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDD 40
A+D +++ + +DD D++ + D ++
Sbjct: 4 AEDGQVEEEPLNSEDDVSDEEGQELFDTEN 33
Score = 25.7 bits (56), Expect = 3.5
Identities = 5/31 (16%), Positives = 15/31 (48%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDD 35
E +++ + +DD D++ + D ++
Sbjct: 3 GAEDGQVEEEPLNSEDDVSDEEGQELFDTEN 33
>2dyt_A Autophagy-related protein 3; E2 fold, ligase; 2.50A {Saccharomyces
cerevisiae}
Length = 312
Score = 36.0 bits (82), Expect = 0.004
Identities = 9/46 (19%), Positives = 21/46 (45%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRL 55
D + DD D+ D + ++D++DD ++ + + + R
Sbjct: 125 GTKDSSIDDIDELIQDMEIKEEDENDDTEEFNAKGGLAKDMAQERY 170
Score = 27.9 bits (61), Expect = 1.5
Identities = 6/37 (16%), Positives = 15/37 (40%)
Query: 1 MMMVDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDD 37
+D + D ++D++DD ++ + D
Sbjct: 128 DSSIDDIDELIQDMEIKEEDENDDTEEFNAKGGLAKD 164
>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 402
Score = 35.6 bits (81), Expect = 0.004
Identities = 4/31 (12%), Positives = 9/31 (29%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D + + + D + D +E
Sbjct: 372 QKYEAPAYDSTEKEGAEQVDGEQRDGQLQEE 402
Score = 34.1 bits (77), Expect = 0.014
Identities = 4/34 (11%), Positives = 10/34 (29%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
M + D + + + D + D +
Sbjct: 367 MDILTQKYEAPAYDSTEKEGAEQVDGEQRDGQLQ 400
Score = 34.1 bits (77), Expect = 0.017
Identities = 3/33 (9%), Positives = 10/33 (30%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
+ D + + + D + D ++
Sbjct: 370 LTQKYEAPAYDSTEKEGAEQVDGEQRDGQLQEE 402
Score = 32.1 bits (72), Expect = 0.073
Identities = 3/35 (8%), Positives = 11/35 (31%)
Query: 7 EWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDD 41
+ + D + + + D + D ++
Sbjct: 368 DILTQKYEAPAYDSTEKEGAEQVDGEQRDGQLQEE 402
Score = 31.4 bits (70), Expect = 0.13
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
MA+ D + D + + + D + D
Sbjct: 364 MAEMDILTQKYEAPAYDSTEKEGAEQVDGEQRDG 397
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 35.5 bits (81), Expect = 0.005
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 87 CDPHYYGNGCATLCRPRDDSFGHYTCSHTGDR-KCLPGWSGDYC 129
C+ H +G C C ++ + C C GW G C
Sbjct: 233 CELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQC 276
Score = 35.1 bits (80), Expect = 0.007
Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 83 YRVTCDPHYYGNGCATLCRPRDDSFGHYTCSH-TGDRKCLPGWSGDYCTKA 132
C+ +G C LC + C TG+ C PG+ G C KA
Sbjct: 185 IVRRCEAQKWGPECNHLCTA---CMNNGVCHEDTGECICPPGFMGRTCEKA 232
Score = 30.8 bits (69), Expect = 0.16
Identities = 13/46 (28%), Positives = 15/46 (32%), Gaps = 4/46 (8%)
Query: 86 TCDPHYYGNGCATLCRPRDDSFGHYTCSHTGDRKCLPGWSGDYCTK 131
C P +YG C C C C PGW G C +
Sbjct: 279 ACHPGFYGPDCKLRC----SCNNGEMCDRFQGCLCSPGWQGLQCER 320
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear
import, heat motif, NLS-binding; 2.30A {Homo sapiens}
SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A
2qna_A
Length = 876
Score = 35.6 bits (81), Expect = 0.005
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRL 55
D++DDDDD + + C L++
Sbjct: 320 QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATC 358
Score = 35.2 bits (80), Expect = 0.007
Identities = 8/42 (19%), Positives = 11/42 (26%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTT 57
D++DDDDD + L T
Sbjct: 316 KGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLAT 357
Score = 34.1 bits (77), Expect = 0.015
Identities = 7/37 (18%), Positives = 10/37 (27%)
Query: 15 NNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTL 51
D++DDDDD + L
Sbjct: 316 KGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCL 352
Score = 32.9 bits (74), Expect = 0.046
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDD 39
A D++DDDDD +
Sbjct: 314 YAKGALQYLVPILTQTLTKQDENDDDDDWN 343
Score = 29.8 bits (66), Expect = 0.38
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 1 MMMVDGEWWMADDDNNDDDDDDDDDDDDDD 30
++ + D++DDDDD +
Sbjct: 314 YAKGALQYLVPILTQTLTKQDENDDDDDWN 343
>2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli}
Length = 347
Score = 35.1 bits (81), Expect = 0.006
Identities = 2/31 (6%), Positives = 4/31 (12%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D + D +
Sbjct: 56 AFIGGLSDSEFAKFSFTQDGSPFPVKKSEAL 86
Score = 32.8 bits (75), Expect = 0.039
Identities = 1/28 (3%), Positives = 5/28 (17%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDD 40
++ + D +
Sbjct: 60 GLSDSEFAKFSFTQDGSPFPVKKSEALY 87
Score = 32.4 bits (74), Expect = 0.046
Identities = 1/28 (3%), Positives = 5/28 (17%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDD 39
+++ D +
Sbjct: 60 GLSDSEFAKFSFTQDGSPFPVKKSEALY 87
Score = 32.4 bits (74), Expect = 0.049
Identities = 2/31 (6%), Positives = 4/31 (12%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
D + D +
Sbjct: 56 AFIGGLSDSEFAKFSFTQDGSPFPVKKSEAL 86
Score = 32.0 bits (73), Expect = 0.077
Identities = 2/28 (7%), Positives = 5/28 (17%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDDDDDDDD 41
+D + D +
Sbjct: 60 GLSDSEFAKFSFTQDGSPFPVKKSEALY 87
Score = 29.3 bits (66), Expect = 0.62
Identities = 2/26 (7%), Positives = 5/26 (19%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDD 36
+D + D +
Sbjct: 62 SDSEFAKFSFTQDGSPFPVKKSEALY 87
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding
protein, gene regulation; NMR {Homo sapiens} SCOP:
b.40.4.5
Length = 143
Score = 33.4 bits (76), Expect = 0.012
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 8 WWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
N+ D DDD+ DD DDD+D D++
Sbjct: 107 ELPEHAKINETDTFGPGDDDEIQFDDIGDDDEDIDDI 143
Score = 33.1 bits (75), Expect = 0.019
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 6 GEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
GE N D DDD+ DD DDD+D DD
Sbjct: 106 GELPEHAKINETDTFGPGDDDEIQFDDIGDDDEDIDD 142
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 33.7 bits (77), Expect = 0.020
Identities = 10/47 (21%), Positives = 13/47 (27%), Gaps = 1/47 (2%)
Query: 83 YRVTCDPHYYGNGCATLCRPRDDSFGHYTCSHTGDRKCLPGWSGDYC 129
C ++G C C G C PG+ G C
Sbjct: 165 RICECPDGFHGPHCEKALCT-PRCMNGGLCVTPGFCICPPGFYGVNC 210
Score = 33.7 bits (77), Expect = 0.020
Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 86 TCDPHYYGNGCATLCRPRDDSFGHYTCSHTGDRKCLPGWSGDYC 129
C P +YG C F TC + G C PG G+ C
Sbjct: 200 ICPPGFYGVNCDKANCS-TTCFNGGTCFYPGKCICPPGLEGEQC 242
Score = 32.1 bits (73), Expect = 0.063
Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 1/51 (1%)
Query: 83 YRVTCDPHYYGNGCATLCRPRDDSFGHYTCSHTGDRKCLPGWSGDYCTKAV 133
T + C P C+ +C G+ G +C KA+
Sbjct: 133 ILKTPQNAIFFKTCQQAECPGGCR-NGGFCNERRICECPDGFHGPHCEKAL 182
Score = 31.4 bits (71), Expect = 0.099
Identities = 14/48 (29%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 86 TCDPHYYGNGCATLCRPRDDSFGHYTCSHTGDRKCLPGWSGDYCTKAV 133
C P G C P+ C KC G+ GD C+K V
Sbjct: 232 ICPPGLEGEQCEISKCPQPCR-NGGKCIGKSKCKCSKGYQGDLCSKPV 278
Score = 30.2 bits (68), Expect = 0.28
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 83 YRVTCDPHYYGNGCATLCRPRDDS--FGHYTCSHTGDRKCLPGWSGDYCTKAV 133
+ C Y G+ C+ P + H TC +C GW G +C K
Sbjct: 261 SKCKCSKGYQGDLCSK---PVCEPGCGAHGTCHEPNKCQCQEGWHGRHCNKRY 310
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal
nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO
MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G*
3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F*
Length = 288
Score = 33.5 bits (77), Expect = 0.020
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DDD ++DD D+ DD++ + + D+
Sbjct: 249 GDDDEDEDDSDNVMSSDDENAPVATNANATTDQ 281
Score = 33.5 bits (77), Expect = 0.020
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
A + N DDD+D+DD D+ DD++ +
Sbjct: 242 FAQKEINGDDDEDEDDSDNVMSSDDENAPVATNA 275
Score = 32.7 bits (75), Expect = 0.037
Identities = 7/36 (19%), Positives = 17/36 (47%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
D+D++D+ DD++ + + D + D +
Sbjct: 252 DEDEDDSDNVMSSDDENAPVATNANATTDQEGDIHL 287
Score = 32.3 bits (74), Expect = 0.058
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ DD+ D+DD D+ DD++ + + +
Sbjct: 247 INGDDDEDEDDSDNVMSSDDENAPVATNANATTD 280
Score = 30.8 bits (70), Expect = 0.18
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 9 WMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ + N DDD+D+DD D+ DD++ +
Sbjct: 242 FAQKEINGDDDEDEDDSDNVMSSDDENAPVATNAN 276
Score = 30.4 bits (69), Expect = 0.20
Identities = 7/33 (21%), Positives = 17/33 (51%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ ++D+D+DD D+ DD++ + +
Sbjct: 246 EINGDDDEDEDDSDNVMSSDDENAPVATNANAT 278
Score = 30.0 bits (68), Expect = 0.28
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ + +DD+D+DD D+ DD++ + +
Sbjct: 245 KEINGDDDEDEDDSDNVMSSDDENAPVATNANA 277
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 33.1 bits (75), Expect = 0.029
Identities = 6/47 (12%), Positives = 14/47 (29%), Gaps = 3/47 (6%)
Query: 86 TCDPHYYGNGCATLCRPR---DDSFGHYTCSHTGDRKCLPGWSGDYC 129
+ +G C+ C ++ TC C ++ +
Sbjct: 611 KFEKGPFGKNCSAACPGLQLSNNPVKGRTCKERDSEGCWVAYTLEQQ 657
Score = 31.2 bits (70), Expect = 0.15
Identities = 9/47 (19%), Positives = 13/47 (27%), Gaps = 2/47 (4%)
Query: 86 TCDPHYYGNGCATLCRPRDDSFGHYTCSHTGDRKCLPGWSGDYCTKA 132
C Y C + +C+ K G G C+ A
Sbjct: 580 ECHSGYQLPLCQECPGCPSPCGKYISCAEC--LKFEKGPFGKNCSAA 624
Score = 27.8 bits (61), Expect = 2.3
Identities = 9/52 (17%), Positives = 15/52 (28%), Gaps = 6/52 (11%)
Query: 86 TCDPHYYGNGCAT-LCRPRDDSFGHYTCSH-----TGDRKCLPGWSGDYCTK 131
C P + G+ C + CS +C G+ C +
Sbjct: 541 RCHPGFEGSACQCERTTEGCLNPRRVECSGRGRCRCNVCECHSGYQLPLCQE 592
>1nh2_C Transcription initiation factor IIA large chain;
transcription/DNA; HET: 5IU; 1.90A {Saccharomyces
cerevisiae} SCOP: b.56.1.1 PDB: 1ytf_C*
Length = 79
Score = 31.5 bits (71), Expect = 0.030
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITC 48
+ D+ + DD DDD + ++D DE ++ C
Sbjct: 3 SALLDTDEVGSELDDSDDDYLISEGEEDGPDENLMLC 39
Score = 30.3 bits (68), Expect = 0.073
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
A D ++ + DD DDD + ++D D++ ++
Sbjct: 4 ALLDTDEVGSELDDSDDDYLISEGEEDGPDENLML 38
Score = 30.3 bits (68), Expect = 0.079
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 6 GEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDD 40
G + D D + DD DDD + ++D D++
Sbjct: 1 GSSALLDTDEVGSELDDSDDDYLISEGEEDGPDEN 35
Score = 29.2 bits (65), Expect = 0.18
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ D D+ + DD DDD + ++D
Sbjct: 2 SSALLDTDEVGSELDDSDDDYLISEGEEDG 31
Score = 26.9 bits (59), Expect = 1.1
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLI 52
D D+ + DD DDD + E + L+
Sbjct: 2 SSALLDTDEVGSELDDSDDDYLISEGEEDGPDENLM 37
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation,
class I, activator, RNA polymeras holoenzyme, sigma70,
open complex, CAP, CRP; HET: DNA CMP; 19.80A
{Escherichia coli k-12}
Length = 613
Score = 33.1 bits (75), Expect = 0.038
Identities = 9/39 (23%), Positives = 20/39 (51%)
Query: 18 DDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLT 56
++ D DD ++ D+D + +V+ + ++ I R T
Sbjct: 57 EEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTT 95
Score = 31.1 bits (70), Expect = 0.15
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
+ D DD ++ D+D + V
Sbjct: 57 EEAPDADDLMLAENTADEDAAEAAAQVLSSV 87
Score = 30.0 bits (67), Expect = 0.33
Identities = 5/31 (16%), Positives = 11/31 (35%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
++ D DD ++ D+D +
Sbjct: 57 EEAPDADDLMLAENTADEDAAEAAAQVLSSV 87
Score = 26.9 bits (59), Expect = 3.5
Identities = 4/31 (12%), Positives = 11/31 (35%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
D D+ ++ D+D + + +
Sbjct: 61 DADDLMLAENTADEDAAEAAAQVLSSVESEI 91
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear
transport receptor, cell cycle, translation; HET: GNP;
2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A
1f59_A 1o6o_A 1o6p_A
Length = 462
Score = 32.9 bits (74), Expect = 0.040
Identities = 8/39 (20%), Positives = 14/39 (35%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRL 55
D++DDDDD + + C L++
Sbjct: 320 QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATC 358
Score = 32.1 bits (72), Expect = 0.065
Identities = 7/40 (17%), Positives = 10/40 (25%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRL 55
D++DDDDD + L
Sbjct: 316 KGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLL 355
Score = 31.0 bits (69), Expect = 0.16
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDD 39
A D++DDDDD +
Sbjct: 314 YAKGALQYLVPILTQTLTKQDENDDDDDWN 343
Score = 28.3 bits (62), Expect = 1.4
Identities = 8/37 (21%), Positives = 13/37 (35%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITC 48
D++DDDDD + ++ TC
Sbjct: 322 LVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATC 358
Score = 27.9 bits (61), Expect = 1.6
Identities = 6/30 (20%), Positives = 12/30 (40%)
Query: 1 MMMVDGEWWMADDDNNDDDDDDDDDDDDDD 30
++ + D++DDDDD +
Sbjct: 314 YAKGALQYLVPILTQTLTKQDENDDDDDWN 343
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining,
protein/nucleic acid complex, alpha/beta domain, beta
barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1
c.62.1.3 PDB: 1jeq_A* 3rzx_B
Length = 609
Score = 33.0 bits (74), Expect = 0.044
Identities = 6/74 (8%), Positives = 26/74 (35%), Gaps = 14/74 (18%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD--EVIITCKTLISRLTTQRWLDVGPSW 67
M+ ++ + D++ +++ +++ + D + +I +D +
Sbjct: 1 MSGWESYYKTEGDEEAEEEQEENLEASGDYKYSGRDSLIFL------------VDASKAM 48
Query: 68 TEDEHKSAHSSMLY 81
E + + +
Sbjct: 49 FESQSEDELTPFDM 62
Score = 29.1 bits (64), Expect = 0.64
Identities = 3/30 (10%), Positives = 13/30 (43%)
Query: 2 MMVDGEWWMADDDNNDDDDDDDDDDDDDDD 31
M ++ + D +++ +++ + D
Sbjct: 1 MSGWESYYKTEGDEEAEEEQEENLEASGDY 30
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay,
ribosomal protein,hydrolase; 9.50A {Saccharomyces
cerevisiae}
Length = 611
Score = 32.8 bits (75), Expect = 0.049
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLIS 53
D + DD D D+ + DD +DD+ + +EV T K +
Sbjct: 5 DYSDGADDMPDFHDEGEFDDYLNDDEYELMNEVFPTLKAQLQ 46
Score = 30.8 bits (70), Expect = 0.18
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDD 41
MA D +D DD D D+ + DD +DD+ +
Sbjct: 1 MAYSDYSDGADDMPDFHDEGEFDDYLNDDEYE 32
Score = 30.5 bits (69), Expect = 0.25
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 15 NNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITC 48
++ D DD D D+ + DD +DD+ E++
Sbjct: 4 SDYSDGADDMPDFHDEGEFDDYLNDDEYELMNEV 37
Score = 28.5 bits (64), Expect = 1.0
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
+ D DD D D+ + DD +DD+ +
Sbjct: 4 SDYSDGADDMPDFHDEGEFDDYLNDDEYE 32
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer
complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH
UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F*
1p84_F* 2ibz_H* 1kyo_F*
Length = 146
Score = 31.4 bits (70), Expect = 0.070
Identities = 14/33 (42%), Positives = 28/33 (84%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
++ +++ D+D+D+D+D+DDDDDDD+D+++E
Sbjct: 38 EGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEE 70
Score = 30.6 bits (68), Expect = 0.12
Identities = 15/33 (45%), Positives = 27/33 (81%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
A + ++++ D+D+D+D+D+DDDDDDD+D+E
Sbjct: 36 AAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEE 68
Score = 30.6 bits (68), Expect = 0.13
Identities = 15/33 (45%), Positives = 29/33 (87%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
A+ + ++++ D+D+D+D+D+DDDDDDD+D++E
Sbjct: 37 AEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEE 69
Score = 28.3 bits (62), Expect = 0.73
Identities = 14/38 (36%), Positives = 29/38 (76%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCK 49
D+D ++D+D+DDDDDDD+D++++++ D +++ K
Sbjct: 48 DEDEDEDEDEDDDDDDDEDEEEEEEVTDQLEDLREHFK 85
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein
complex, translation regulation; 2.74A
{Schizosaccharomyces pombe}
Length = 592
Score = 32.0 bits (73), Expect = 0.084
Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 12/68 (17%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTTQRWLDVGPSWTEDEHKSA 75
N D DD + D++ +++ ++ +++ S + T R +G +E E
Sbjct: 9 NLDLDDYELDEEPGEEELTEEQEEE----------FRSAVATVRETLLGVPISEKEIADT 58
Query: 76 HSSMLYEY 83
Y +
Sbjct: 59 --VWYYYF 64
Score = 30.5 bits (69), Expect = 0.23
Identities = 8/39 (20%), Positives = 21/39 (53%)
Query: 15 NNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLIS 53
N D DD + D++ +++ ++ +++ V +TL+
Sbjct: 9 NLDLDDYELDEEPGEEELTEEQEEEFRSAVATVRETLLG 47
Score = 26.6 bits (59), Expect = 4.1
Identities = 3/22 (13%), Positives = 14/22 (63%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDD 33
D D+ + D++ +++ ++ ++
Sbjct: 11 DLDDYELDEEPGEEELTEEQEE 32
Score = 26.6 bits (59), Expect = 5.2
Identities = 4/31 (12%), Positives = 16/31 (51%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
D +D + D++ +++ ++ +++ V
Sbjct: 11 DLDDYELDEEPGEEELTEEQEEEFRSAVATV 41
Score = 26.2 bits (58), Expect = 7.0
Identities = 2/22 (9%), Positives = 14/22 (63%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDD 34
D ++ + D++ +++ ++ ++
Sbjct: 11 DLDDYELDEEPGEEELTEEQEE 32
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A
{Mus musculus}
Length = 540
Score = 31.8 bits (71), Expect = 0.088
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 11/62 (17%)
Query: 35 DDDDDDDDEVIITCKTLISRLTTQRWLDVGPSWTEDEHKSAHSSMLYEYRVTCDPHYYGN 94
D D DD+++ +C + ++ H + + Y C PH G
Sbjct: 463 DADYGWDDDLLGSCDRSPHSGFHEVTCELN-----------HGRVKFSYHAKCLPHLTGG 511
Query: 95 GC 96
C
Sbjct: 512 TC 513
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic
transport, nuclear trafficking, importin- beta, complex;
1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
2bku_B 3ea5_B* 3nd2_A
Length = 861
Score = 31.7 bits (71), Expect = 0.092
Identities = 6/40 (15%), Positives = 14/40 (35%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLT 56
D + + ++D +DDD V ++ +
Sbjct: 320 SSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFA 359
Score = 30.5 bits (68), Expect = 0.23
Identities = 7/39 (17%), Positives = 15/39 (38%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRL 55
D + + ++D +DDD + C L ++
Sbjct: 323 KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQN 361
Score = 30.2 bits (67), Expect = 0.31
Identities = 6/42 (14%), Positives = 13/42 (30%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTL 51
A D + + ++D +DDD + +
Sbjct: 317 FALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLF 358
Score = 29.4 bits (65), Expect = 0.65
Identities = 5/56 (8%), Positives = 17/56 (30%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTTQRW 60
+ + + + +DDD + + + + + + +T W
Sbjct: 328 NLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNW 383
Score = 28.6 bits (63), Expect = 1.1
Identities = 7/43 (16%), Positives = 14/43 (32%)
Query: 18 DDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTTQRW 60
D + + ++D +DDD + +L Q
Sbjct: 320 SSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNC 362
Score = 28.6 bits (63), Expect = 1.3
Identities = 4/36 (11%), Positives = 13/36 (36%)
Query: 3 MVDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDD 38
+ + + + + ++D +DDD +
Sbjct: 311 PLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWN 346
Score = 28.2 bits (62), Expect = 1.5
Identities = 4/38 (10%), Positives = 14/38 (36%)
Query: 9 WMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
++ + + + ++D +DDD + +
Sbjct: 318 ALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACL 355
>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein
protein complex, translation regulation; 2.74A
{Schizosaccharomyces pombe}
Length = 390
Score = 31.6 bits (71), Expect = 0.097
Identities = 4/19 (21%), Positives = 13/19 (68%)
Query: 17 DDDDDDDDDDDDDDDDDDD 35
D++D +D++D++ + +
Sbjct: 371 DEEDISEDEEDEESQNFEH 389
Score = 31.6 bits (71), Expect = 0.097
Identities = 4/19 (21%), Positives = 13/19 (68%)
Query: 18 DDDDDDDDDDDDDDDDDDD 36
D++D +D++D++ + +
Sbjct: 371 DEEDISEDEEDEESQNFEH 389
Score = 31.6 bits (71), Expect = 0.097
Identities = 4/19 (21%), Positives = 13/19 (68%)
Query: 19 DDDDDDDDDDDDDDDDDDD 37
D++D +D++D++ + +
Sbjct: 371 DEEDISEDEEDEESQNFEH 389
Score = 31.6 bits (71), Expect = 0.097
Identities = 4/19 (21%), Positives = 13/19 (68%)
Query: 20 DDDDDDDDDDDDDDDDDDD 38
D++D +D++D++ + +
Sbjct: 371 DEEDISEDEEDEESQNFEH 389
Score = 31.6 bits (71), Expect = 0.097
Identities = 4/19 (21%), Positives = 13/19 (68%)
Query: 21 DDDDDDDDDDDDDDDDDDD 39
D++D +D++D++ + +
Sbjct: 371 DEEDISEDEEDEESQNFEH 389
Score = 31.6 bits (71), Expect = 0.097
Identities = 4/19 (21%), Positives = 13/19 (68%)
Query: 22 DDDDDDDDDDDDDDDDDDD 40
D++D +D++D++ + +
Sbjct: 371 DEEDISEDEEDEESQNFEH 389
Score = 31.6 bits (71), Expect = 0.097
Identities = 4/19 (21%), Positives = 13/19 (68%)
Query: 23 DDDDDDDDDDDDDDDDDDD 41
D++D +D++D++ + +
Sbjct: 371 DEEDISEDEEDEESQNFEH 389
Score = 31.6 bits (71), Expect = 0.097
Identities = 4/19 (21%), Positives = 13/19 (68%)
Query: 24 DDDDDDDDDDDDDDDDDDD 42
D++D +D++D++ + +
Sbjct: 371 DEEDISEDEEDEESQNFEH 389
Score = 30.9 bits (69), Expect = 0.16
Identities = 3/19 (15%), Positives = 13/19 (68%)
Query: 16 NDDDDDDDDDDDDDDDDDD 34
+++D +D++D++ + +
Sbjct: 371 DEEDISEDEEDEESQNFEH 389
Score = 30.5 bits (68), Expect = 0.21
Identities = 4/19 (21%), Positives = 13/19 (68%)
Query: 25 DDDDDDDDDDDDDDDDDDE 43
D++D +D++D++ + +
Sbjct: 371 DEEDISEDEEDEESQNFEH 389
Score = 28.9 bits (64), Expect = 0.71
Identities = 3/19 (15%), Positives = 12/19 (63%)
Query: 15 NNDDDDDDDDDDDDDDDDD 33
+ +D +D++D++ + +
Sbjct: 371 DEEDISEDEEDEESQNFEH 389
Score = 28.9 bits (64), Expect = 0.73
Identities = 3/19 (15%), Positives = 13/19 (68%)
Query: 12 DDDNNDDDDDDDDDDDDDD 30
D+++ +D++D++ + +
Sbjct: 371 DEEDISEDEEDEESQNFEH 389
Score = 28.9 bits (64), Expect = 0.85
Identities = 3/19 (15%), Positives = 12/19 (63%)
Query: 13 DDNNDDDDDDDDDDDDDDD 31
D+ + +D++D++ + +
Sbjct: 371 DEEDISEDEEDEESQNFEH 389
Score = 28.9 bits (64), Expect = 0.87
Identities = 4/19 (21%), Positives = 11/19 (57%)
Query: 14 DNNDDDDDDDDDDDDDDDD 32
D D +D++D++ + +
Sbjct: 371 DEEDISEDEEDEESQNFEH 389
Score = 28.6 bits (63), Expect = 0.91
Identities = 3/20 (15%), Positives = 14/20 (70%)
Query: 10 MADDDNNDDDDDDDDDDDDD 29
+ ++D ++D++D++ + +
Sbjct: 370 VDEEDISEDEEDEESQNFEH 389
>2e9x_D GINS complex subunit 4; eukaryotic DNA replication; HET: DNA;
2.30A {Homo sapiens} SCOP: a.278.1.4 d.344.1.3 PDB:
2q9q_B* 2eho_A*
Length = 223
Score = 31.2 bits (70), Expect = 0.11
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 27 DDDDDDDDDDDDDDDDEVIITCKTLISRLTT 57
++ D D D +EV++T LI RL
Sbjct: 2 TEEVDFLGQDSDGGSEEVVLTPAELIERLEQ 32
>1zyi_A Methylosome subunit picln; PH domain, cell volume regulation, RNA
splicing, translation; NMR {Canis lupus familiaris}
Length = 171
Score = 31.0 bits (69), Expect = 0.13
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ D +D+D DD D ++ D + + +
Sbjct: 143 HPDPEDEDSDDYDGEEYDVEAHEQGQEN 170
Score = 29.4 bits (65), Expect = 0.37
Identities = 7/29 (24%), Positives = 17/29 (58%)
Query: 15 NNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ D +D+D DD D ++ D + + +++
Sbjct: 143 HPDPEDEDSDDYDGEEYDVEAHEQGQEND 171
Score = 28.3 bits (62), Expect = 1.0
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDDDDDDD 40
D D+D DD D ++ D + + ++D
Sbjct: 145 DPEDEDSDDYDGEEYDVEAHEQGQEND 171
Score = 27.9 bits (61), Expect = 1.3
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDD 39
D ++D DD D ++ D + + ++D
Sbjct: 145 DPEDEDSDDYDGEEYDVEAHEQGQEND 171
Score = 27.5 bits (60), Expect = 1.7
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDD 38
D ++ D DD D ++ D + + ++D
Sbjct: 145 DPEDEDSDDYDGEEYDVEAHEQGQEND 171
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A
{Saccharomyces cerevisiae}
Length = 800
Score = 31.3 bits (71), Expect = 0.13
Identities = 7/45 (15%), Positives = 20/45 (44%), Gaps = 6/45 (13%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDD------DDDDDDDDEVIITCK 49
+DDD + +DD ++ +++ +D +++I +
Sbjct: 3 SDDDLLESEDDYGSEEALSEENVHEASANPQPEDFHGIDIVINHR 47
Score = 27.8 bits (62), Expect = 1.9
Identities = 7/41 (17%), Positives = 18/41 (43%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
D + ++DD ++ +++ + + +D D VI
Sbjct: 4 DDDLLESEDDYGSEEALSEENVHEASANPQPEDFHGIDIVI 44
>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative,
center for eukaryotic structural genomics, CESG,
structural genomics; NMR {Arabidopsis thaliana}
Length = 150
Score = 30.3 bits (68), Expect = 0.14
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 4 VDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
VD W +D+ + + DD+ + D + DDD +
Sbjct: 101 VDWNKWCDEDEEVNSETASDDESAFVNQDSESSDDDGLLYL 141
Score = 28.0 bits (62), Expect = 1.1
Identities = 6/36 (16%), Positives = 16/36 (44%)
Query: 8 WWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ D + D+D++ + + DD+ + D +
Sbjct: 98 YIKVDWNKWCDEDEEVNSETASDDESAFVNQDSESS 133
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A
{Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1
PDB: 1sc5_A
Length = 239
Score = 30.6 bits (70), Expect = 0.15
Identities = 6/38 (15%), Positives = 14/38 (36%)
Query: 19 DDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLT 56
D D + + +++ E+ K +S+L
Sbjct: 152 RDFARDYSELIPSSTNVEEEVIKRELTEKVKEAVSKLP 189
>1p9r_A General secretion pathway protein E; bacterial type II secretion
system cytoplasmic protein - GSPE, putative ATPase/ ATP
binding protein; 2.50A {Vibrio cholerae} SCOP:
c.37.1.11 PDB: 1p9w_A*
Length = 418
Score = 30.6 bits (70), Expect = 0.23
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
+D D DD ++ ++D + +DD +I
Sbjct: 2 EDIGADSDDFFSLAEELPQNEDLLESEDDAPII 34
Score = 29.5 bits (67), Expect = 0.45
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
D DD ++ ++D + +DD II
Sbjct: 5 GADSDDFFSLAEELPQNEDLLESEDDAPII 34
Score = 29.5 bits (67), Expect = 0.47
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDD 39
M D + DD ++ ++D + +DD
Sbjct: 1 MEDIGADSDDFFSLAEELPQNEDLLESEDD 30
Score = 29.5 bits (67), Expect = 0.55
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDD 40
+D D DD ++ ++D + +DD
Sbjct: 2 EDIGADSDDFFSLAEELPQNEDLLESEDD 30
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 30.4 bits (68), Expect = 0.28
Identities = 16/53 (30%), Positives = 18/53 (33%), Gaps = 10/53 (18%)
Query: 86 TCDPHYYGNGCATLCRPRDDSF---------GHYTCSHTGDRKCLPGWSGDYC 129
C +G C D S GH CS GD C W+G YC
Sbjct: 507 VCHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCS-CGDCLCDSDWTGYYC 558
Score = 29.7 bits (66), Expect = 0.48
Identities = 9/47 (19%), Positives = 11/47 (23%), Gaps = 5/47 (10%)
Query: 85 VTCDPHYYGNGCATLCRPRDDSFGHYTCSHTGDRKCLPGWSGDYCTK 131
V P YG+ C D C C G +
Sbjct: 587 VCIQPGSYGDTCEKCPTCPDACTFKKECVE-----CKKFDRGALHDE 628
Score = 28.9 bits (64), Expect = 0.93
Identities = 11/48 (22%), Positives = 13/48 (27%), Gaps = 8/48 (16%)
Query: 87 CDPHYYGNGCATLCRPRDDSFGHYTCSHTGDR-----KCLPGWSGDYC 129
C Y C PR+ G CS G+ C G
Sbjct: 473 CSEEDYRPSQQDECSPRE---GQPVCSQRGECLCGQCVCHSSDFGKIT 517
Score = 27.4 bits (60), Expect = 3.1
Identities = 10/48 (20%), Positives = 12/48 (25%), Gaps = 4/48 (8%)
Query: 82 EYRVTCDPHYYGNGCATLCRPRDDSFGHYTCSHTGDRKCLPGWSGDYC 129
+ CD R G +C PGW G C
Sbjct: 428 QVTFDCDCACQAQAEPNSHRC----NNGNGTFECGVCRCGPGWLGSQC 471
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding,
exonucle binding, mitochondrion, rRNA processing; 3.00A
{Saccharomyces cerevisiae}
Length = 977
Score = 30.1 bits (68), Expect = 0.32
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 2 MMVDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
++ EW D + D +D+ D + DDDD+++ +
Sbjct: 296 LLPQSEWKAPSSIVLDSEHFDVNDNPDIEAGDDDDNNESSSNTTV 340
Score = 25.9 bits (57), Expect = 8.9
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
D + DDDD+++ + D D +I
Sbjct: 321 PDIEAGDDDDNNESSSNTTVISDKQRRLLAKDAMI 355
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.32
Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 24/94 (25%)
Query: 35 DDDDDDDDEVIITCKTLISRLTTQRW------------LDVGPSWTEDEHKSAHSSMLYE 82
D D V++ L ++ L++ + + H S++
Sbjct: 397 FDVIKSDVMVVV--NKLHKYSLVEKQPKESTISIPSIYLELKV--KLENEYALHRSIVDH 452
Query: 83 YRVTCDPHYYGNGCATLCRPRDDSFGHYTCSHTG 116
Y + + + P D Y SH G
Sbjct: 453 YNIPK--TFDSDDLIP---PYLDQ---YFYSHIG 478
Score = 26.7 bits (58), Expect = 4.6
Identities = 5/26 (19%), Positives = 12/26 (46%), Gaps = 7/26 (26%)
Query: 37 DDDDDDEVI----ITCKTLISRLTTQ 58
+ + + ++CK L+ TT+
Sbjct: 251 LNVQNAKAWNAFNLSCKILL---TTR 273
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis,
cell cycle, nucleus, phosph RNA-binding, ATP-binding,
helicase, hydrolase; 3.50A {Mus musculus}
Length = 358
Score = 29.7 bits (66), Expect = 0.48
Identities = 11/66 (16%), Positives = 20/66 (30%), Gaps = 14/66 (21%)
Query: 23 DDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTTQRWLDVGPSWTEDEHKSAHSSMLYE 82
D ++ D D + DDD + + V E + + ++ E
Sbjct: 18 QVYDVEEVDVKDPNYDDDQENCVYE--------------TVVLPLDETAFEKTLTPIIQE 63
Query: 83 YRVTCD 88
Y D
Sbjct: 64 YFEHGD 69
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA
degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A
{Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5
b.40.4.5 b.40.4.16
Length = 760
Score = 29.6 bits (67), Expect = 0.55
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 7 EWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
EW D + D +D+ D + DDDD+++ +
Sbjct: 84 EWKAPSSIVLDSEHFDVNDNPDIEAGDDDDNNESSSNTTV 123
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold,
dioxygenase, iron, mRNP complex, prolyl hydroxylase;
HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A
3kt4_A 3mgu_A
Length = 633
Score = 29.6 bits (65), Expect = 0.57
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 15 NNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIIT 47
+DD+D+ +D +D DD D V+I
Sbjct: 540 MDDDEDNKQYLKEDVEDASVYRADDSGDSVLIN 572
Score = 28.0 bits (61), Expect = 1.8
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 7 EWWMADDDNNDDDDDDDDDDDDDDDDDDDDDD 38
E +M DDD ++ +D +D DD D
Sbjct: 536 ELYMMDDDEDNKQYLKEDVEDASVYRADDSGD 567
>1twf_B DNA-directed RNA polymerase II 140 kDa polypeptid; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.1 PDB: 1i3q_B
1i6h_B 1k83_B* 1nik_B 1nt9_B 1pqv_B 1r5u_B 1r9s_B*
1r9t_B* 1sfo_B* 1twa_B* 1twc_B* 1i50_B* 1twg_B* 1twh_B*
1wcm_B 1y1v_B 1y1w_B 1y1y_B 1y77_B* ...
Length = 1224
Score = 29.5 bits (66), Expect = 0.59
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDD 38
M+D N++ D+D +D+ +D
Sbjct: 1 MSDLANSEKYYDEDPYGFEDESAPITAED 29
Score = 27.5 bits (61), Expect = 2.7
Identities = 4/24 (16%), Positives = 10/24 (41%)
Query: 21 DDDDDDDDDDDDDDDDDDDDDDEV 44
D + + D+D +D+ +
Sbjct: 2 SDLANSEKYYDEDPYGFEDESAPI 25
Score = 27.1 bits (60), Expect = 3.7
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 23 DDDDDDDDDDDDDDDDDDDDEVIIT---CKTLIS 53
D + + D+D +D+ IT +IS
Sbjct: 2 SDLANSEKYYDEDPYGFEDESAPITAEDSWAVIS 35
Score = 26.0 bits (57), Expect = 7.5
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 22 DDDDDDDDDDDDDDDDDDDDDEVI 45
D + + D+D +D+ I
Sbjct: 2 SDLANSEKYYDEDPYGFEDESAPI 25
Score = 26.0 bits (57), Expect = 8.0
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDD 40
D + + D+D +D+ +D
Sbjct: 2 SDLANSEKYYDEDPYGFEDESAPITAED 29
Score = 26.0 bits (57), Expect = 8.5
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D + + D+D +D+ E
Sbjct: 2 SDLANSEKYYDEDPYGFEDESAPITAE 28
Score = 26.0 bits (57), Expect = 8.5
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDD 39
D N + D+D +D+ +D
Sbjct: 2 SDLANSEKYYDEDPYGFEDESAPITAED 29
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 27.8 bits (62), Expect = 0.60
Identities = 14/87 (16%), Positives = 21/87 (24%), Gaps = 25/87 (28%)
Query: 56 TTQRWLDVGPSWTEDEHKSAHSSMLYEYRVTCDPHYYG------NGCAT-------LCRP 102
TQ SW +S C+ C+ C+
Sbjct: 10 KTQMIYQQHQSWLRPVLRSNRV-----EYCWCNSGRAQCHSVPVKSCSEPRCFNGGTCQQ 64
Query: 103 RDDSFGHYTCSHTGDRKCLPGWSGDYC 129
F + C C G++G C
Sbjct: 65 -ALYFSDFVCQ------CPEGFAGKSC 84
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 28.7 bits (63), Expect = 0.61
Identities = 8/48 (16%), Positives = 13/48 (27%), Gaps = 1/48 (2%)
Query: 86 TCDPHYYGNGCATLCRPRDDSFGHYTCSHTGDRKCLPGWSGDYCTKAV 133
T + C P C+ +C G+ G +C
Sbjct: 136 TPQNAIFFKTCQQAECPGGCR-NGGFCNERRICECPDGFHGPHCEGTK 182
>4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase,
patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A
Length = 360
Score = 29.0 bits (65), Expect = 0.79
Identities = 3/27 (11%), Positives = 8/27 (29%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDD 38
D + ++ + D D +
Sbjct: 99 DQGLKGKEKEEALEAVIPDTKDRIVLN 125
Score = 28.6 bits (64), Expect = 0.92
Identities = 4/38 (10%), Positives = 9/38 (23%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
E +D D + ++ + D
Sbjct: 82 PAEPITPEDYAAFQSIRDQGLKGKEKEEALEAVIPDTK 119
Score = 28.2 bits (63), Expect = 1.2
Identities = 3/28 (10%), Positives = 8/28 (28%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDD 39
D + ++ + D D +
Sbjct: 98 RDQGLKGKEKEEALEAVIPDTKDRIVLN 125
Score = 27.8 bits (62), Expect = 1.6
Identities = 3/42 (7%), Positives = 11/42 (26%)
Query: 2 MMVDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ + +D D + ++ + D +
Sbjct: 78 YWHEPAEPITPEDYAAFQSIRDQGLKGKEKEEALEAVIPDTK 119
Score = 27.8 bits (62), Expect = 2.0
Identities = 4/39 (10%), Positives = 11/39 (28%)
Query: 2 MMVDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDD 40
D + + D + ++ + D D +
Sbjct: 87 TPEDYAAFQSIRDQGLKGKEKEEALEAVIPDTKDRIVLN 125
Score = 27.1 bits (60), Expect = 2.7
Identities = 4/33 (12%), Positives = 8/33 (24%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
D D + ++ + D D
Sbjct: 88 PEDYAAFQSIRDQGLKGKEKEEALEAVIPDTKD 120
Score = 27.1 bits (60), Expect = 3.1
Identities = 3/34 (8%), Positives = 7/34 (20%)
Query: 9 WMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
D + ++ + D D
Sbjct: 88 PEDYAAFQSIRDQGLKGKEKEEALEAVIPDTKDR 121
Score = 26.3 bits (58), Expect = 5.6
Identities = 4/41 (9%), Positives = 11/41 (26%)
Query: 4 VDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
V W + +D D + ++ + +
Sbjct: 75 VFPYWHEPAEPITPEDYAAFQSIRDQGLKGKEKEEALEAVI 115
>3f3f_C Nucleoporin NUP85; structural protein, protein complex,
nucleopori complex, nuclear pore complex,
macromolecular assembly, MEM coat; 2.90A {Saccharomyces
cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Length = 570
Score = 29.0 bits (64), Expect = 0.81
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 1 MMMVDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
M + D + D D D DD ++ D+++ D
Sbjct: 1 MTIDDSNRLLMDVDQFDFLDDGTAQLSNNKTDEEEQLYKRDP 42
Score = 27.9 bits (61), Expect = 2.0
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
DD N D D D DD ++ D++E +
Sbjct: 4 DDSNRLLMDVDQFDFLDDGTAQLSNNKTDEEEQLY 38
Score = 27.5 bits (60), Expect = 2.8
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
D + D DD ++ D+++ D V
Sbjct: 12 DVDQFDFLDDGTAQLSNNKTDEEEQLYKRDPV 43
Score = 26.7 bits (58), Expect = 4.9
Identities = 4/31 (12%), Positives = 12/31 (38%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDEVIIT 47
DD ++ D+++ D +++
Sbjct: 20 DDGTAQLSNNKTDEEEQLYKRDPVSGAILVP 50
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA-
binding, transport, tRNA processing, tRNA-binding, RNA
binding protein; 3.10A {Schizosaccharomyces pombe} PDB:
3icq_T*
Length = 980
Score = 29.1 bits (64), Expect = 0.87
Identities = 8/40 (20%), Positives = 17/40 (42%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLT 56
D+ + DDD D +++ + + T ++ S L
Sbjct: 394 DESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLF 433
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 28.8 bits (64), Expect = 0.90
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 7/48 (14%)
Query: 85 VTCDPHYYGNGCATLCRPRDDSFGHYTCSHTGDRKCLPGWSGDYCTKA 132
+ C+ LCR + C+ TG C PGW GD+C A
Sbjct: 384 TVQPAQTLTSECSRLCR-------NGYCTPTGKCCCSPGWEGDFCRTA 424
>3t41_A Epidermin leader peptide processing serine protea; structural
genomics, center for structural genomics of infec
diseases, csgid; 1.95A {Staphylococcus aureus} PDB:
3qfh_A
Length = 471
Score = 28.7 bits (64), Expect = 0.93
Identities = 4/32 (12%), Positives = 9/32 (28%)
Query: 4 VDGEWWMADDDNNDDDDDDDDDDDDDDDDDDD 35
+ N + ++ D D +D
Sbjct: 168 FSTDSKNLVPLNGFRGTEPEETGDVHDVNDRK 199
Score = 28.3 bits (63), Expect = 1.4
Identities = 3/31 (9%), Positives = 9/31 (29%)
Query: 9 WMADDDNNDDDDDDDDDDDDDDDDDDDDDDD 39
+ + + ++ D D +D
Sbjct: 169 STDSKNLVPLNGFRGTEPEETGDVHDVNDRK 199
Score = 27.9 bits (62), Expect = 1.5
Identities = 3/31 (9%), Positives = 10/31 (32%)
Query: 8 WWMADDDNNDDDDDDDDDDDDDDDDDDDDDD 38
+ + + + ++ D D +D
Sbjct: 169 STDSKNLVPLNGFRGTEPEETGDVHDVNDRK 199
Score = 27.5 bits (61), Expect = 2.0
Identities = 5/30 (16%), Positives = 10/30 (33%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDD 40
D N + + ++ D D +D
Sbjct: 170 TDSKNLVPLNGFRGTEPEETGDVHDVNDRK 199
Score = 27.5 bits (61), Expect = 2.4
Identities = 3/32 (9%), Positives = 9/32 (28%)
Query: 3 MVDGEWWMADDDNNDDDDDDDDDDDDDDDDDD 34
+ + + ++ D D +D
Sbjct: 168 FSTDSKNLVPLNGFRGTEPEETGDVHDVNDRK 199
Score = 27.5 bits (61), Expect = 2.4
Identities = 5/32 (15%), Positives = 11/32 (34%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDD 41
+ D N + + ++ D D +D
Sbjct: 168 FSTDSKNLVPLNGFRGTEPEETGDVHDVNDRK 199
Score = 27.5 bits (61), Expect = 2.6
Identities = 3/30 (10%), Positives = 11/30 (36%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
++ + + + ++ D D +D
Sbjct: 169 STDSKNLVPLNGFRGTEPEETGDVHDVNDR 198
Score = 26.4 bits (58), Expect = 5.8
Identities = 4/31 (12%), Positives = 11/31 (35%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
D+ + + + ++ D D +D
Sbjct: 169 STDSKNLVPLNGFRGTEPEETGDVHDVNDRK 199
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA
C-terminal domain, DNA wrapping, beta-strand-bearing
proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas
campestris PV}
Length = 370
Score = 28.7 bits (65), Expect = 0.93
Identities = 5/25 (20%), Positives = 9/25 (36%)
Query: 19 DDDDDDDDDDDDDDDDDDDDDDDDE 43
D ++ +D D+ D E
Sbjct: 345 DASLEEPEDVVDEAVAITSDAPPAE 369
Score = 28.0 bits (63), Expect = 1.4
Identities = 4/25 (16%), Positives = 9/25 (36%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDD 41
D ++ +D D+ D +
Sbjct: 345 DASLEEPEDVVDEAVAITSDAPPAE 369
Score = 28.0 bits (63), Expect = 1.4
Identities = 4/25 (16%), Positives = 9/25 (36%)
Query: 18 DDDDDDDDDDDDDDDDDDDDDDDDD 42
D ++ +D D+ D +
Sbjct: 345 DASLEEPEDVVDEAVAITSDAPPAE 369
Score = 27.6 bits (62), Expect = 2.4
Identities = 3/25 (12%), Positives = 9/25 (36%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDD 40
+ ++ +D D+ D +
Sbjct: 345 DASLEEPEDVVDEAVAITSDAPPAE 369
Score = 26.8 bits (60), Expect = 3.9
Identities = 4/25 (16%), Positives = 10/25 (40%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDDDDD 38
D + ++ +D D+ D +
Sbjct: 345 DASLEEPEDVVDEAVAITSDAPPAE 369
Score = 26.4 bits (59), Expect = 5.5
Identities = 3/25 (12%), Positives = 9/25 (36%)
Query: 15 NNDDDDDDDDDDDDDDDDDDDDDDD 39
+ ++ +D D+ D +
Sbjct: 345 DASLEEPEDVVDEAVAITSDAPPAE 369
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 28.7 bits (63), Expect = 0.99
Identities = 8/43 (18%), Positives = 11/43 (25%)
Query: 87 CDPHYYGNGCATLCRPRDDSFGHYTCSHTGDRKCLPGWSGDYC 129
C P G TC + C ++G C
Sbjct: 354 CIPSISSIGTNVCDNELLHCQNGGTCHNNVRCLCPAAYTGILC 396
>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell
adhesion, disease mutation, dwarfism, EGF-like domain,
glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo
sapiens}
Length = 551
Score = 28.4 bits (63), Expect = 1.3
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
N+D D D D D DDD D D +
Sbjct: 145 SQKNDDQKDTDQDGRGDACDDDIDGDRIRNQA 176
Score = 28.0 bits (62), Expect = 1.6
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
A D+ +DD D D D D DDD D D +
Sbjct: 139 ACDNCRSQKNDDQKDTDQDGRGDACDDDIDGDRI 172
Score = 28.0 bits (62), Expect = 1.8
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
DG DDD + D + D+ + D D D D
Sbjct: 157 DGRGDACDDDIDGDRIRNQADNCPRVPNSDQKDSDGDG 194
Score = 27.6 bits (61), Expect = 2.4
Identities = 11/38 (28%), Positives = 14/38 (36%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
AD D++ D D D D D D D D+
Sbjct: 205 KSNPDQADVDHDFVGDACDSDQDQDGDGHQDSRDNCPT 242
Score = 27.2 bits (60), Expect = 2.7
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
+DD D D D D DDD D D + D+
Sbjct: 147 KNDDQKDTDQDGRGDACDDDIDGDRIRNQADN 178
Score = 27.2 bits (60), Expect = 2.8
Identities = 9/39 (23%), Positives = 12/39 (30%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D D + D DDD D D + D+
Sbjct: 146 QKNDDQKDTDQDGRGDACDDDIDGDRIRNQADNCPRVPN 184
Score = 27.2 bits (60), Expect = 3.4
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
NDD D D D D DDD D D ++
Sbjct: 144 RSQKNDDQKDTDQDGRGDACDDDIDGDRIRNQ 175
Score = 26.8 bits (59), Expect = 3.6
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D ++ D D D D D D D D D D D +
Sbjct: 200 DNCPQKSNPDQADVDHDFVGDACDSDQDQDGDGHQDSRD 238
Score = 26.8 bits (59), Expect = 4.3
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
D D+ +DD D D D D DDD
Sbjct: 136 WGDACDNCRSQKNDDQKDTDQDGRGDACDDD 166
Score = 26.8 bits (59), Expect = 4.4
Identities = 12/37 (32%), Positives = 13/37 (35%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITC 48
N D D D D D D D D D D + C
Sbjct: 204 QKSNPDQADVDHDFVGDACDSDQDQDGDGHQDSRDNC 240
Score = 26.8 bits (59), Expect = 4.7
Identities = 9/38 (23%), Positives = 11/38 (28%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
D + D D D D D D D D+
Sbjct: 206 SNPDQADVDHDFVGDACDSDQDQDGDGHQDSRDNCPTV 243
Score = 26.4 bits (58), Expect = 5.5
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
DG D+ + D + D+D D D+ ++
Sbjct: 111 DGVPNEKDNCPLVRNPDQRNTDEDKWGDACDNCRSQKND 149
Score = 26.0 bits (57), Expect = 6.6
Identities = 10/39 (25%), Positives = 13/39 (33%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ + D D D D D D D D D D+
Sbjct: 207 NPDQADVDHDFVGDACDSDQDQDGDGHQDSRDNCPTVPN 245
Score = 26.0 bits (57), Expect = 6.6
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
DD + D + D+ + D D D D
Sbjct: 165 DDIDGDRIRNQADNCPRVPNSDQKDSDGDGI 195
Score = 26.0 bits (57), Expect = 6.7
Identities = 12/31 (38%), Positives = 14/31 (45%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
D +N +DD D D D D DDD D
Sbjct: 138 DACDNCRSQKNDDQKDTDQDGRGDACDDDID 168
Score = 26.0 bits (57), Expect = 7.1
Identities = 9/38 (23%), Positives = 12/38 (31%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
D D D + D+ + D D D D D
Sbjct: 161 DACDDDIDGDRIRNQADNCPRVPNSDQKDSDGDGIGDA 198
Score = 26.0 bits (57), Expect = 7.6
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
D + D D D DDD D D + D+ V
Sbjct: 150 DQKDTDQDGRGDACDDDIDGDRIRNQADNCPRV 182
Score = 26.0 bits (57), Expect = 8.1
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
D+ + D D D D D D D D D
Sbjct: 199 CDNCPQKSNPDQADVDHDFVGDACDSDQDQDG 230
Score = 26.0 bits (57), Expect = 8.2
Identities = 10/38 (26%), Positives = 13/38 (34%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
DG+ DN + D D D D D D+
Sbjct: 168 DGDRIRNQADNCPRVPNSDQKDSDGDGIGDACDNCPQK 205
Score = 25.7 bits (56), Expect = 8.8
Identities = 9/44 (20%), Positives = 15/44 (34%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITC 48
G+ D D + + D+ + D D D D + C
Sbjct: 159 RGDACDDDIDGDRIRNQADNCPRVPNSDQKDSDGDGIGDACDNC 202
Score = 25.7 bits (56), Expect = 8.9
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
DG+ + DN + D + D+D D D+
Sbjct: 109 DGDGVPNEKDNCPLVRNPDQRNTDEDKWGDACDNCRSQ 146
Score = 25.7 bits (56), Expect = 9.4
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
A D+ + D D D D D D D D D
Sbjct: 198 ACDNCPQKSNPDQADVDHDFVGDACDSDQDQD 229
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition,
ATP-binding, DNA- binding, cell division, transmembrane,
inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB:
2j5p_A*
Length = 512
Score = 28.4 bits (64), Expect = 1.3
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Query: 20 DDDDDDDDDDDDDDDDDDDDDDDE----VIITCKTLISRLTTQRWLDVG 64
D + + D ++ D D+ V K IS + QR +G
Sbjct: 431 SDSESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGV--QRQFRIG 477
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 27.8 bits (62), Expect = 1.3
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 6/34 (17%)
Query: 96 CATLCRPRDDSFGHYTCSHTGDRKCLPGWSGDYC 129
C R D+F Y C C G++G +C
Sbjct: 66 CEISEAYRGDTFIGYVCK------CPRGFNGIHC 93
>2cy7_A Cysteine protease APG4B; papain-like fold, autophagy, hydrolase;
1.90A {Homo sapiens} SCOP: d.3.1.22 PDB: 2d1i_A 2zzp_A
2z0d_A 2z0e_A
Length = 396
Score = 28.3 bits (62), Expect = 1.4
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 7 EWWMADDDNNDDDDDDDDDDDDDDDDDDDDD 37
D N D D + + D +D+D
Sbjct: 360 SHLACPDVLNLSLDSSDVERLERFFDSEDED 390
>3euh_C MUKE, chromosome partition protein MUKF; chromosome condensation,
condensin, non-SMC subunit, kleisin, calcium, cell
cycle, cell division; 2.90A {Escherichia coli} PDB:
3rpu_G
Length = 234
Score = 27.8 bits (61), Expect = 1.4
Identities = 5/32 (15%), Positives = 17/32 (53%)
Query: 1 MMMVDGEWWMADDDNNDDDDDDDDDDDDDDDD 32
++ DGE ++ +D+ +++ D +++
Sbjct: 203 RLIRDGEAMPIENHLQLNDETEENQPDSGEEE 234
>1ux6_A Thrombospondin-1; extracellular matrix, calcium binding, L-type
lectin, glycoprotein, cell adhesion, calcium-binding,
heparin- binding; 1.9A {Homo sapiens} SCOP: b.29.1.16
g.75.1.1
Length = 350
Score = 27.7 bits (61), Expect = 1.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
+ + D D D D D DDD+D DD D+
Sbjct: 58 PNANQADHDKDGKGDACDHDDDNDGIPDDKDN 89
Score = 27.3 bits (60), Expect = 2.9
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
N + D D D D D DDD+D DD+
Sbjct: 56 YVPNANQADHDKDGKGDACDHDDDNDGIPDDK 87
Score = 26.5 bits (58), Expect = 4.5
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
AD D + D D DDD+D DD D+
Sbjct: 57 VPNANQADHDKDGKGDACDHDDDNDGIPDDKDNCRLVPN 95
Score = 25.7 bits (56), Expect = 8.4
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
D D D D DDD+D DD D+ + +
Sbjct: 65 HDKDGKGDACDHDDDNDGIPDDKDNCRLVPNPD 97
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone,
H2A/H2B, tata-DNA, transcription initiation, NC2,
negative cofactor, structural genomics, PSI; 2.62A {Homo
sapiens} SCOP: a.22.1.3
Length = 179
Score = 27.5 bits (60), Expect = 1.8
Identities = 7/40 (17%), Positives = 11/40 (27%)
Query: 3 MVDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
+ EW + D++DDDD
Sbjct: 139 LAQQEWLQMQQAAQQAQLAAASASASNQAGSSQDEEDDDD 178
Score = 27.5 bits (60), Expect = 1.8
Identities = 5/36 (13%), Positives = 11/36 (30%)
Query: 9 WMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
W+ + D++DDD++
Sbjct: 144 WLQMQQAAQQAQLAAASASASNQAGSSQDEEDDDDI 179
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition,
ATP-binding, DNA- cell division, DNA translocation,
KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas
aeruginosa} PDB: 2iuu_A*
Length = 574
Score = 27.7 bits (62), Expect = 1.9
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 6/56 (10%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE----VIITCKTLISRLTTQRWLDVG 64
++ D D + +DD DE V + + IS + QR L +G
Sbjct: 477 AGVDEGGGGGGSFDGGDGSGEGSEDDPLYDEAVRFVTESRRASISAV--QRKLKIG 530
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein;
2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB:
2bym_A
Length = 140
Score = 27.0 bits (59), Expect = 1.9
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
M + + DDDDDDDDDDD+++ + + + D+
Sbjct: 108 MLRLNRSAGSDDDDDDDDDDDEEESESESESDE 140
Score = 27.0 bits (59), Expect = 2.4
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 14 DNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
N DDDDDDDDDDD+++ + + + DE
Sbjct: 111 LNRSAGSDDDDDDDDDDDEEESESESESDE 140
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal
transduction, regulation, phosphorylation, G proteins,
thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP:
c.47.1.6
Length = 217
Score = 27.3 bits (60), Expect = 2.3
Identities = 3/31 (9%), Positives = 11/31 (35%)
Query: 15 NNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
++ D + + + D +D+ +
Sbjct: 47 DDKDSKERMSRKMSIQEYELIHQDKEDEGCL 77
Score = 26.9 bits (59), Expect = 3.2
Identities = 4/34 (11%), Positives = 10/34 (29%)
Query: 9 WMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
D+ D + + + D +D+
Sbjct: 42 SPQSRDDKDSKERMSRKMSIQEYELIHQDKEDEG 75
Score = 26.5 bits (58), Expect = 3.9
Identities = 5/31 (16%), Positives = 11/31 (35%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
+D D + + + D +DE +
Sbjct: 47 DDKDSKERMSRKMSIQEYELIHQDKEDEGCL 77
>3euk_L Chromosome partition protein MUKE; MUKB, MUKF, chromosome
condensation, condensin, SMC, N subunit, ABC-type
ATPase, WHD, ATP-binding; HET: AGS; 4.00A {Haemophilus
ducreyi}
Length = 238
Score = 27.4 bits (60), Expect = 2.4
Identities = 5/35 (14%), Positives = 14/35 (40%)
Query: 2 MMVDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDD 36
++ DGE + +D D+ ++ + +
Sbjct: 204 LIRDGEATTPTLLTTAAIEFAEDGARDELEESEAE 238
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding,
phosphorylation, protein biosynthesis, translation
inititation; 1.8A {Homo sapiens}
Length = 208
Score = 27.0 bits (59), Expect = 2.6
Identities = 4/34 (11%), Positives = 17/34 (50%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKT 50
+++ +++D+D++ + + + T K+
Sbjct: 155 EEESSGGEEEDEDENIEVVYSKLESVPKVETVKS 188
Score = 26.6 bits (58), Expect = 3.4
Identities = 2/26 (7%), Positives = 13/26 (50%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDDD 41
+++ +++D+D++ + +
Sbjct: 153 EAEEESSGGEEEDEDENIEVVYSKLE 178
Score = 26.6 bits (58), Expect = 3.9
Identities = 7/48 (14%), Positives = 21/48 (43%), Gaps = 10/48 (20%)
Query: 9 WMADDDNNDDDDDDDDDDDDDDDDDDDDD----------DDDDDEVII 46
W+ + + +++D+D++ + + D+ DD++ I
Sbjct: 150 WLKEAEEESSGGEEEDEDENIEVVYSKLESVPKVETVKSDNKDDDIDI 197
Score = 26.6 bits (58), Expect = 3.9
Identities = 5/34 (14%), Positives = 18/34 (52%)
Query: 20 DDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLIS 53
+++ +++D+D++ + E + +T+ S
Sbjct: 155 EEESSGGEEEDEDENIEVVYSKLESVPKVETVKS 188
>3iab_B Ribonucleases P/MRP protein subunit POP7; RNAse P, ribonuclease P,
ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast,
tRNA; 2.70A {Saccharomyces cerevisiae}
Length = 140
Score = 26.6 bits (58), Expect = 2.6
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDD 35
D+ + D D + D +DDD +
Sbjct: 101 DEVITEGQADIDMESDVEDDDKET 124
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like
domain, structure and function, coagulation factor;
1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 24.7 bits (55), Expect = 2.7
Identities = 7/25 (28%), Positives = 8/25 (32%), Gaps = 6/25 (24%)
Query: 105 DSFGHYTCSHTGDRKCLPGWSGDYC 129
D Y C C G+ G C
Sbjct: 19 DDINSYECW------CPFGFEGKNC 37
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 26.5 bits (59), Expect = 2.8
Identities = 7/52 (13%), Positives = 14/52 (26%), Gaps = 5/52 (9%)
Query: 83 YRVTCDPHYYGNGCATL--CRPRDDSFGHYTCSHTGDR---KCLPGWSGDYC 129
Y C + G C C ++ + + + C G+
Sbjct: 69 YECWCQVGFEGKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPD 120
Score = 25.8 bits (57), Expect = 5.6
Identities = 7/25 (28%), Positives = 8/25 (32%), Gaps = 6/25 (24%)
Query: 105 DSFGHYTCSHTGDRKCLPGWSGDYC 129
D Y C C G+ G C
Sbjct: 64 DDINSYECW------CQVGFEGKNC 82
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 3.3
Identities = 4/8 (50%), Positives = 7/8 (87%)
Query: 154 LEPSMQLY 161
L+ S++LY
Sbjct: 25 LQASLKLY 32
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 27.0 bits (60), Expect = 3.3
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
Query: 105 DSFGHYTCSHTGDRKCLPGWSGDYCTKAVQKLSPTK 140
DS YTC+ C PG+ G C A + P +
Sbjct: 21 DSIWGYTCT------CSPGYEGSNCELAKNECHPER 50
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase,
hydrolase, phosphoprotein, protease; 3.14A {Drosophila
melanogaster}
Length = 1354
Score = 27.1 bits (59), Expect = 3.5
Identities = 6/37 (16%), Positives = 12/37 (32%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDD 41
+ W+ D + D D + + + DD
Sbjct: 212 TADGWLTIVDTTEQGDLDQALRIGEYSRTHETRNVDD 248
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 27.0 bits (59), Expect = 3.5
Identities = 11/51 (21%), Positives = 13/51 (25%), Gaps = 8/51 (15%)
Query: 87 CDPHYYGNGCATL-------CRPRDDSFGHYTCSH-TGDRKCLPGWSGDYC 129
C +Y C P G C TG C +G C
Sbjct: 423 CKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRC 473
Score = 26.6 bits (58), Expect = 5.0
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 5/50 (10%)
Query: 87 CDPHYYGNGCATL-CRP----RDDSFGHYTCSHTGDRKCLPGWSGDYCTK 131
C P ++G CRP + + +G CLP G C +
Sbjct: 476 CLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQCSCLPHMIGRQCNE 525
Score = 26.2 bits (57), Expect = 6.0
Identities = 9/36 (25%), Positives = 10/36 (27%)
Query: 94 NGCATLCRPRDDSFGHYTCSHTGDRKCLPGWSGDYC 129
G A+ C P D G C G C
Sbjct: 257 YGHASECAPVDGVNEEVEGMVHGHCMCRHNTKGLNC 292
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 26.1 bits (58), Expect = 3.6
Identities = 8/29 (27%), Positives = 9/29 (31%), Gaps = 6/29 (20%)
Query: 105 DSFGHYTCSHTGDRKCLPGWSGDYCTKAV 133
D Y C CLP + G C
Sbjct: 63 DQLQSYICF------CLPAFEGRNCETHK 85
>3sbt_B A1 cistron-splicing factor AAR2; rnaseh like domain, VHS like
domain, U5 snRNP assembly; 1.80A {Saccharomyces
cerevisiae} PDB: 3sbs_A
Length = 363
Score = 27.0 bits (59), Expect = 3.6
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
D++DD D++ DD+DD+ + I+
Sbjct: 318 GKDNEDDALIYGISDEERDDEDDEHNPTIV 347
Score = 25.5 bits (55), Expect = 9.8
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 15 NNDDDDDDDDDDDDDDDDDDDDDDD 39
D++DD D++ DD+DD+
Sbjct: 318 GKDNEDDALIYGISDEERDDEDDEH 342
Score = 25.5 bits (55), Expect = 9.9
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ D++DD D++ DD+DDE
Sbjct: 314 PELLGKDNEDDALIYGISDEERDDEDDE 341
>2jes_A Portal protein; DNA translocation, molecular motor, VIRA protein,
viral protein; 3.4A {Bacteriophage SPP1}
Length = 503
Score = 27.1 bits (59), Expect = 3.7
Identities = 9/40 (22%), Positives = 19/40 (47%)
Query: 4 VDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ E +++ N + + DD+ DDD ++DD +
Sbjct: 453 PEEELARIEEEMNQYAEMQGNLLDDEGGDDDLEEDDPNAG 492
Score = 25.9 bits (56), Expect = 8.0
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 13 DDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ + + DD+ DDD ++DD + E
Sbjct: 465 NQYAEMQGNLLDDEGGDDDLEEDDPNAGAAE 495
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 25.8 bits (57), Expect = 3.7
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 9/51 (17%)
Query: 86 TCDPHYYGNGCATLCRPR---DDSFGHYTCSHTGDRKCLPGWSGDYCTKAV 133
C + CA+LC D G ++C C GW G +C + V
Sbjct: 8 QCLVLPLEHPCASLCCGHGTCIDGIGSFSCD------CRSGWEGRFCQREV 52
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase,
oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas
paucimobilis} PDB: 3awq_A* 3awp_A*
Length = 415
Score = 27.0 bits (60), Expect = 3.8
Identities = 6/65 (9%), Positives = 11/65 (16%), Gaps = 5/65 (7%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITC----KTLISRLT-TQRWLDVGP 65
A + D DD ++ + +T L
Sbjct: 202 AGSIGSGSGTAAYAIAWHRDRHDDLLSPHVAAVELVNVLRPTVAIAVYITFVAHALQTCS 261
Query: 66 SWTED 70
Sbjct: 262 GIRAA 266
>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat
motif; 1.50A {Saccharomyces cerevisiae}
Length = 177
Score = 26.6 bits (58), Expect = 3.9
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 16 NDDDDDDDDDDDDDDDDDD 34
+ DDD++DD+ + D
Sbjct: 159 TAESDDDEEDDELERPHRD 177
Score = 26.2 bits (57), Expect = 5.0
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 19 DDDDDDDDDDDDDDDDD 35
+ DDD++DD+ + D
Sbjct: 161 ESDDDEEDDELERPHRD 177
Score = 26.2 bits (57), Expect = 5.0
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 20 DDDDDDDDDDDDDDDDD 36
+ DDD++DD+ + D
Sbjct: 161 ESDDDEEDDELERPHRD 177
Score = 26.2 bits (57), Expect = 5.0
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 21 DDDDDDDDDDDDDDDDD 37
+ DDD++DD+ + D
Sbjct: 161 ESDDDEEDDELERPHRD 177
Score = 26.2 bits (57), Expect = 5.0
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 22 DDDDDDDDDDDDDDDDD 38
+ DDD++DD+ + D
Sbjct: 161 ESDDDEEDDELERPHRD 177
Score = 26.2 bits (57), Expect = 5.0
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 23 DDDDDDDDDDDDDDDDD 39
+ DDD++DD+ + D
Sbjct: 161 ESDDDEEDDELERPHRD 177
Score = 26.2 bits (57), Expect = 5.0
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 24 DDDDDDDDDDDDDDDDD 40
+ DDD++DD+ + D
Sbjct: 161 ESDDDEEDDELERPHRD 177
Score = 26.2 bits (57), Expect = 5.0
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 25 DDDDDDDDDDDDDDDDD 41
+ DDD++DD+ + D
Sbjct: 161 ESDDDEEDDELERPHRD 177
Score = 26.2 bits (57), Expect = 5.0
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 26 DDDDDDDDDDDDDDDDD 42
+ DDD++DD+ + D
Sbjct: 161 ESDDDEEDDELERPHRD 177
Score = 25.8 bits (56), Expect = 6.7
Identities = 6/22 (27%), Positives = 14/22 (63%)
Query: 9 WMADDDNNDDDDDDDDDDDDDD 30
W+ +++DD++DD+ + D
Sbjct: 156 WLETAESDDDEEDDELERPHRD 177
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton,
protein COM cytoskeletal protein; HET: GTP; 2.5A
{Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB:
2btq_A*
Length = 473
Score = 26.6 bits (59), Expect = 4.2
Identities = 5/36 (13%), Positives = 9/36 (25%)
Query: 11 ADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
A++ D D DD + +
Sbjct: 430 AEESGAKAKVQDSAGDTGMRAAAAGVSDDARGSMSL 465
Score = 26.6 bits (59), Expect = 4.5
Identities = 6/38 (15%), Positives = 10/38 (26%)
Query: 17 DDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISR 54
D D DD ++ + L+ R
Sbjct: 434 GAKAKVQDSAGDTGMRAAAAGVSDDARGSMSLRDLVDR 471
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer,
hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Length = 448
Score = 26.5 bits (59), Expect = 4.8
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
D+D+ DD ++ + DDD +EV
Sbjct: 409 DEDDPTADDTSAAVTEEMPPLEGDDDTSRMEEV 441
>3qv0_A Mitochondrial acidic protein MAM33; A BOWL like structure,
mitochondrial oxidative phosphorylati protein binding;
2.10A {Saccharomyces cerevisiae}
Length = 227
Score = 26.2 bits (57), Expect = 5.5
Identities = 4/28 (14%), Positives = 14/28 (50%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
+ ++ D++ + ++D ++DD
Sbjct: 77 AQIANLPYNNAMDENTEQNEDGINEDDF 104
>2owl_A Recombination-associated protein RDGC; replication, RECA; 2.40A
{Escherichia coli}
Length = 303
Score = 26.4 bits (58), Expect = 5.6
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 21 DDDDDDDDDDDDDDDDDDDDDDEVIITCKTL 51
D+ D ++D D +D D + I+ L
Sbjct: 256 CDELRDQNEDIDREDFAQRFDADFILMTGEL 286
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 26.2 bits (58), Expect = 5.7
Identities = 13/44 (29%), Positives = 17/44 (38%)
Query: 6 GEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCK 49
GE DD D D D +D D D D D ++I+
Sbjct: 182 GELKEGDDWGIFPKDGSGDSHPDFPEDADVDLKDVDKILLISED 225
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 26.4 bits (57), Expect = 6.2
Identities = 11/43 (25%), Positives = 12/43 (27%), Gaps = 7/43 (16%)
Query: 87 CDPHYYGNGCATLCRPRDDSFGHYTCSHTGDRKCLPGWSGDYC 129
C+ D GH C G C PG G C
Sbjct: 457 CNCSDTQPQAPHCS----DGQGHLQC---GVCSCAPGRLGRLC 492
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT,
cytoplasmic vesicle, membrane, Ca structural protein;
9.00A {Bos taurus}
Length = 205
Score = 26.0 bits (56), Expect = 6.4
Identities = 6/43 (13%), Positives = 13/43 (30%), Gaps = 10/43 (23%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDD----------DDDDDDD 42
MADD + + ++D ++D+
Sbjct: 1 MADDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEG 43
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 25.3 bits (56), Expect = 6.7
Identities = 13/63 (20%), Positives = 15/63 (23%), Gaps = 17/63 (26%)
Query: 82 EYRVTCDPHYYGNGCAT---LCRPR--------DDSFGHYTCSHTGDRKCLPGWSGDYCT 130
E D C D G YTC+ CL G+ G C
Sbjct: 24 EVFEDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEYTCT------CLEGFEGKNCE 77
Query: 131 KAV 133
Sbjct: 78 LFT 80
Score = 25.3 bits (56), Expect = 6.9
Identities = 13/63 (20%), Positives = 17/63 (26%), Gaps = 18/63 (28%)
Query: 83 YRVTCDPHYYGNGCAT----LCRPR--------DDSFGHYTCSHTGDRKCLPGWSGDYCT 130
Y TC + G C LC + CS C G++
Sbjct: 63 YTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCS------CARGYTLADNG 116
Query: 131 KAV 133
KA
Sbjct: 117 KAC 119
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2
g.3.11.2 PDB: 1npe_B 1tle_A
Length = 162
Score = 25.5 bits (56), Expect = 7.0
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 12/55 (21%)
Query: 87 CDPHYYGN-----GCATLCRP------RDDSFGHYTCSHTGD-RKCLPGWSGDYC 129
CD Y+G+ G LCRP D + TG+ KC+ +G YC
Sbjct: 35 CDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYC 89
>3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A
{Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A
3ti7_A
Length = 340
Score = 25.8 bits (57), Expect = 7.2
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
D + D D D+ D D+ D E
Sbjct: 66 SLDGDGRDADPFDEGDWFDNWACGGRPDPRKER 98
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 25.3 bits (56), Expect = 7.6
Identities = 12/58 (20%), Positives = 17/58 (29%), Gaps = 17/58 (29%)
Query: 83 YRVTCDPHYYGNGCAT---LCRPRD--------DSFGHYTCSHTGDRKCLPGWSGDYC 129
++ C P Y G C C D + C C G++G C
Sbjct: 66 FQCICMPGYEGVHCEVNTDECASSPCLHNGRCLDKINEFQCE------CPTGFTGHLC 117
Score = 25.3 bits (56), Expect = 8.8
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 6/25 (24%)
Query: 105 DSFGHYTCSHTGDRKCLPGWSGDYC 129
++ G + C CL G++G C
Sbjct: 23 NTLGSFECQ------CLQGYTGPRC 41
>3ftj_A MACB, macrolide export ATP-binding/permease protein MACB;
macrolide-specific pump, ABC-type transporter; 2.00A
{Actinobacillus actinomycetemcomitans}
Length = 226
Score = 25.7 bits (57), Expect = 7.8
Identities = 2/24 (8%), Positives = 10/24 (41%)
Query: 39 DDDDEVIITCKTLISRLTTQRWLD 62
+ + T+++++T +
Sbjct: 151 GNSLNLYSPYSTVLNKITGGSRIG 174
>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1);
tRNA mimicry, protein sythesis, STOP codon recognition,
peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP:
c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A
2lgt_A 2hst_A
Length = 437
Score = 25.7 bits (55), Expect = 9.7
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 17 DDDDDDDDDDDDDDDDDDD 35
D + DD+ D DD
Sbjct: 418 DFQGMEYQGGDDEFFDLDD 436
Score = 25.7 bits (55), Expect = 9.7
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 18 DDDDDDDDDDDDDDDDDDD 36
D + DD+ D DD
Sbjct: 418 DFQGMEYQGGDDEFFDLDD 436
Score = 25.7 bits (55), Expect = 9.7
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 19 DDDDDDDDDDDDDDDDDDD 37
D + DD+ D DD
Sbjct: 418 DFQGMEYQGGDDEFFDLDD 436
Score = 25.7 bits (55), Expect = 9.7
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 20 DDDDDDDDDDDDDDDDDDD 38
D + DD+ D DD
Sbjct: 418 DFQGMEYQGGDDEFFDLDD 436
Score = 25.7 bits (55), Expect = 9.7
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 21 DDDDDDDDDDDDDDDDDDD 39
D + DD+ D DD
Sbjct: 418 DFQGMEYQGGDDEFFDLDD 436
Score = 25.7 bits (55), Expect = 9.7
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 22 DDDDDDDDDDDDDDDDDDD 40
D + DD+ D DD
Sbjct: 418 DFQGMEYQGGDDEFFDLDD 436
Score = 25.7 bits (55), Expect = 9.7
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 23 DDDDDDDDDDDDDDDDDDD 41
D + DD+ D DD
Sbjct: 418 DFQGMEYQGGDDEFFDLDD 436
Score = 25.7 bits (55), Expect = 9.7
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 24 DDDDDDDDDDDDDDDDDDD 42
D + DD+ D DD
Sbjct: 418 DFQGMEYQGGDDEFFDLDD 436
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.136 0.455
Gapped
Lambda K H
0.267 0.0436 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,931,667
Number of extensions: 179333
Number of successful extensions: 4013
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2268
Number of HSP's successfully gapped: 827
Length of query: 166
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 79
Effective length of database: 4,272,666
Effective search space: 337540614
Effective search space used: 337540614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.9 bits)