RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10880
(166 letters)
>d1qkla_ a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 41.7 bits (98), Expect = 4e-06
Identities = 12/34 (35%), Positives = 24/34 (70%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDE 43
M+D+++N D DD DD ++D+ DD ++ +++ E
Sbjct: 1 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQE 34
Score = 37.9 bits (88), Expect = 1e-04
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 16 NDDDDDDDDDDDDDDDDDDDDDDDDDDEVII 46
+D++D+ D DD DD ++D+ DD ++ E
Sbjct: 2 SDNEDNFDGDDFDDVEEDEGLDDLENAEEEG 32
Score = 32.9 bits (75), Expect = 0.007
Identities = 7/29 (24%), Positives = 19/29 (65%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDD 40
D D+ DD ++D+ DD ++ +++ ++ +
Sbjct: 9 DGDDFDDVEEDEGLDDLENAEEEGQENVE 37
Score = 31.7 bits (72), Expect = 0.014
Identities = 9/37 (24%), Positives = 21/37 (56%)
Query: 3 MVDGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDD 39
M D E DD +D ++D+ DD ++ +++ ++ +
Sbjct: 1 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVE 37
>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 35.6 bits (82), Expect = 0.001
Identities = 15/38 (39%), Positives = 17/38 (44%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDD 42
GE N D DDD+ DD DDD+D DD
Sbjct: 105 YGELPEHAKINETDTFGPGDDDEIQFDDIGDDDEDIDD 142
Score = 35.2 bits (81), Expect = 0.001
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 8 WWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
N+ D DDD+ DD DDD+D D++
Sbjct: 107 ELPEHAKINETDTFGPGDDDEIQFDDIGDDDEDIDDI 143
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 959
Score = 29.5 bits (65), Expect = 0.20
Identities = 3/40 (7%), Positives = 15/40 (37%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCK 49
+ + ++ + +D D D+ ++ +++
Sbjct: 863 IIETASSQSIANLKNDYVDLDNLEEISTFGSHFSKLVSIS 902
Score = 26.4 bits (57), Expect = 2.4
Identities = 3/35 (8%), Positives = 11/35 (31%)
Query: 10 MADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
+ +D + D+ ++ + D +
Sbjct: 875 LKNDYVDLDNLEEISTFGSHFSKLVSISEKPFDPL 909
>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 63
Score = 26.5 bits (58), Expect = 0.38
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 6/43 (13%)
Query: 87 CDPHYYGNGCATLCRPRDDSFGHYTCSHTGDRKCLPGWSGDYC 129
+ + NG + Y C C PG++G C
Sbjct: 9 KEKTFCVNGGECFMVKDLSNPSRYLCK------CQPGFTGARC 45
>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 25.0 bits (55), Expect = 1.0
Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 6/25 (24%)
Query: 105 DSFGHYTCSHTGDRKCLPGWSGDYC 129
D G YTC+ CL G+ G C
Sbjct: 16 DGLGEYTCT------CLEGFEGKNC 34
>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 24.6 bits (54), Expect = 1.1
Identities = 7/25 (28%), Positives = 8/25 (32%), Gaps = 6/25 (24%)
Query: 105 DSFGHYTCSHTGDRKCLPGWSGDYC 129
D Y C C G+ G C
Sbjct: 19 DDINSYECW------CPFGFEGKNC 37
>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 24.7 bits (54), Expect = 1.1
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 6/29 (20%)
Query: 105 DSFGHYTCSHTGDRKCLPGWSGDYCTKAV 133
++ +YTC C PG+SG C + V
Sbjct: 17 ETINNYTCK------CDPGFSGLKCEQIV 39
>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 24.2 bits (53), Expect = 1.5
Identities = 6/25 (24%), Positives = 9/25 (36%), Gaps = 6/25 (24%)
Query: 105 DSFGHYTCSHTGDRKCLPGWSGDYC 129
D + C C G++G C
Sbjct: 16 DKINEFQCE------CPTGFTGHLC 34
>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 24.3 bits (53), Expect = 1.9
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 6/25 (24%)
Query: 105 DSFGHYTCSHTGDRKCLPGWSGDYC 129
D G + C C+PG+ G +C
Sbjct: 17 DQIGEFQCI------CMPGYEGVHC 35
>d1rp4a_ a.227.1.1 (A:) Endoplasmic oxidoreductin 1, Ero1p {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 374
Score = 26.4 bits (58), Expect = 2.0
Identities = 6/38 (15%), Positives = 12/38 (31%)
Query: 7 EWWMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEV 44
E D D +D + D +D + + +
Sbjct: 89 ECKFLDQLCQTSKKPVDIEDTINYCDVNDFNGKNAVLI 126
Score = 25.3 bits (55), Expect = 5.0
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 12 DDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVI 45
D D +D + D +D + + +I
Sbjct: 93 LDQLCQTSKKPVDIEDTINYCDVNDFNGKNAVLI 126
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 25.5 bits (55), Expect = 2.0
Identities = 7/40 (17%), Positives = 10/40 (25%)
Query: 111 TCSHTGDRKCLPGWSGDYCTKAVQKLSPTKALPNRTSRTL 150
C H C+ G C NR ++
Sbjct: 40 GCEHIFCSNCVSDCIGTGCPVCYTPAWIQDLKINRQLDSM 79
>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 42
Score = 23.5 bits (51), Expect = 3.6
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 6/25 (24%)
Query: 105 DSFGHYTCSHTGDRKCLPGWSGDYC 129
++ G + C CL G++G C
Sbjct: 21 NTLGSFECQ------CLQGYTGPRC 39
>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 37
Score = 23.1 bits (50), Expect = 4.1
Identities = 8/25 (32%), Positives = 9/25 (36%), Gaps = 6/25 (24%)
Query: 105 DSFGHYTCSHTGDRKCLPGWSGDYC 129
D Y C CLP + G C
Sbjct: 18 DQLQSYICF------CLPAFEGRNC 36
>d1jz8a3 b.18.1.5 (A:13-219) beta-Galactosidase {Escherichia coli
[TaxId: 562]}
Length = 207
Score = 24.8 bits (53), Expect = 5.1
Identities = 14/87 (16%), Positives = 24/87 (27%), Gaps = 4/87 (4%)
Query: 5 DGEWWMADDDNNDDDDDDDDDDDDDDDDD----DDDDDDDDDEVIITCKTLISRLTTQRW 60
+GEW A + + + D + D + D I T T +
Sbjct: 43 NGEWRFAWFPAPEAVPESWLECDLPEADTVVVPSNWQMHGYDAPIYTNVTYPITVNPPFV 102
Query: 61 LDVGPSWTEDEHKSAHSSMLYEYRVTC 87
P+ + S L E +
Sbjct: 103 PTENPTGCYSLTFNVDESWLQEGQTRI 129
>d1jv2b4 g.3.11.6 (B:532-562) Integrin beta EGF-like domains {Human
(Homo sapiens) [TaxId: 9606]}
Length = 31
Score = 22.5 bits (48), Expect = 5.6
Identities = 10/22 (45%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 108 GHYTCSHTGDRKCLPGWSGDYC 129
GH C GD C W+G YC
Sbjct: 7 GHGQC-SCGDCLCDSDWTGYYC 27
>d2o3ia1 e.73.1.1 (A:2-390) Hypothetical protein CV3147
{Chromobacterium violaceum [TaxId: 536]}
Length = 389
Score = 24.9 bits (54), Expect = 5.8
Identities = 6/78 (7%), Positives = 12/78 (15%), Gaps = 5/78 (6%)
Query: 38 DDDDDEVIITCKTLISRLTTQRWLDVGPSWTEDEHKSAHSSMLYEYRVT-----CDPHYY 92
D + T IS V + + + +
Sbjct: 305 DSALSHPLATAPDAISYFVEGEGQHVFSNGDLSGNDHGLDPSVRGRKAAVIALPAAAPLS 364
Query: 93 GNGCATLCRPRDDSFGHY 110
G+
Sbjct: 365 EGLILQSFADELAQLGYL 382
>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin
IIa) {Human (Homo sapiens) [TaxId: 9606]}
Length = 48
Score = 22.8 bits (49), Expect = 6.3
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 6/32 (18%)
Query: 105 DSFGHYTCSHTGDRKCLPGWSGDYCTKAVQKL 136
D G ++C C GW G +C + V L
Sbjct: 23 DGIGSFSCD------CRSGWEGRFCQREVSFL 48
>d1xl7a1 c.43.1.3 (A:11-392) Peroxisomal carnitine
O-octanoyltransferase, COT {Mouse (Mus musculus) [TaxId:
10090]}
Length = 382
Score = 24.6 bits (53), Expect = 8.4
Identities = 8/54 (14%), Positives = 16/54 (29%)
Query: 9 WMADDDNNDDDDDDDDDDDDDDDDDDDDDDDDDDEVIITCKTLISRLTTQRWLD 62
++ D N + +D +E + L+ + RW D
Sbjct: 245 LISLDPENLTLLEKIQTSLFVYSIEDSSPHATPEEYSQVFEMLLGGDPSVRWGD 298
>d1jmab1 g.24.1.1 (B:4-59) Cellular receptor HveA {Human (Homo
sapiens) [TaxId: 9606]}
Length = 56
Score = 22.5 bits (48), Expect = 9.3
Identities = 11/44 (25%), Positives = 12/44 (27%), Gaps = 4/44 (9%)
Query: 87 CDPHYY--GNGCATLCRPRDDSFGHYTCSHTGDRKCLPGWSGDY 128
C Y G+ C C P C C P G Y
Sbjct: 1 CKEDEYPVGSECCPKCSPG--YRVKEACGELTGTVCEPCPPGTY 42
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.136 0.455
Gapped
Lambda K H
0.267 0.0573 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 751,412
Number of extensions: 37624
Number of successful extensions: 410
Number of sequences better than 10.0: 1
Number of HSP's gapped: 301
Number of HSP's successfully gapped: 81
Length of query: 166
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 87
Effective length of database: 1,322,926
Effective search space: 115094562
Effective search space used: 115094562
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.0 bits)