BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10883
         (435 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3DWO|X Chain X, Crystal Structure Of A Pseudomonas Aeruginosa Fadl
           Homologue
          Length = 451

 Score = 30.0 bits (66), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 15/61 (24%), Positives = 25/61 (40%)

Query: 253 SILINYPSVFYKHPEFSFLLKERVCALVIKLFSPNIKYRNNALSSSGSSQQNAPLDKPYF 312
           S+  N PS  + +P     + +R+  L +     +IKY  +A    G+       D P  
Sbjct: 21  SLFPNDPSAAFNNPAAMAFIDKRIAQLTVNYADIDIKYNGDAYDYQGNPMTGGYQDGPGT 80

Query: 313 P 313
           P
Sbjct: 81  P 81


>pdb|4FVP|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain (Apo
           Form)
 pdb|4FVQ|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain
           (Mg-Atp-Bound Form)
          Length = 289

 Score = 28.9 bits (63), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 19/94 (20%)

Query: 55  SQMHMVVNQILYPVVQGCETKDQKIIKMCISMMQRLITNQAIDQ--KGARYITDTLWMLM 112
           S  H+V+N   Y V   C   D+ I      ++Q  +   ++D   K  +   + LW L 
Sbjct: 70  SHKHLVLN---YGV---CVCGDENI------LVQEFVKFGSLDTYLKKNKNCINILWKL- 116

Query: 113 ESGTEEVKILQSCTLLLTTNSVVHGEILAKNLVL 146
               E  K L +    L  N+++HG + AKN++L
Sbjct: 117 ----EVAKQLAAAMHFLEENTLIHGNVCAKNILL 146


>pdb|4AK9|A Chain A, Structure Of Chloroplast Ftsy From Physcomitrella Patens
 pdb|4AK9|B Chain B, Structure Of Chloroplast Ftsy From Physcomitrella Patens
          Length = 318

 Score = 28.9 bits (63), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 3/41 (7%)

Query: 6  NPELSLKFLDSLQNDLKNLSIETKKKFPQIKEACEEGILKL 46
           P+ +LK +D+++ D+    +   K  PQIKEA ++ I KL
Sbjct: 62 GPKTALKIVDTIRKDILAGRL---KSGPQIKEALKKNIFKL 99


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.135    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,431,884
Number of Sequences: 62578
Number of extensions: 431332
Number of successful extensions: 863
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 862
Number of HSP's gapped (non-prelim): 4
length of query: 435
length of database: 14,973,337
effective HSP length: 102
effective length of query: 333
effective length of database: 8,590,381
effective search space: 2860596873
effective search space used: 2860596873
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)