Query psy10883
Match_columns 435
No_of_seqs 134 out of 439
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 20:53:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10883.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10883hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03076 ARF guanine nucleotid 100.0 1.9E-67 4.1E-72 608.9 38.2 375 8-405 5-518 (1780)
2 KOG0929|consensus 100.0 2.7E-52 5.8E-57 468.0 23.2 357 17-404 3-435 (1514)
3 KOG1848|consensus 100.0 7E-45 1.5E-49 399.5 14.1 396 9-407 7-424 (1610)
4 PF12783 Sec7_N: Guanine nucle 100.0 2.6E-37 5.5E-42 283.3 16.9 157 211-391 2-168 (168)
5 KOG0928|consensus 99.9 3.7E-26 7.9E-31 253.5 27.4 321 60-402 66-458 (1386)
6 COG5307 SEC7 domain proteins [ 98.3 7.9E-07 1.7E-11 101.0 5.2 139 240-413 24-165 (1024)
7 PF01602 Adaptin_N: Adaptin N 93.3 13 0.00028 39.4 22.4 106 15-131 113-222 (526)
8 PF12719 Cnd3: Nuclear condens 86.0 39 0.00085 33.6 17.1 68 31-98 76-149 (298)
9 PF12348 CLASP_N: CLASP N term 81.9 43 0.00093 31.4 13.7 136 243-405 23-162 (228)
10 PF12348 CLASP_N: CLASP N term 71.0 45 0.00098 31.2 10.5 65 23-95 98-163 (228)
11 PTZ00429 beta-adaptin; Provisi 67.7 2.3E+02 0.005 32.4 30.5 88 73-164 189-279 (746)
12 PF01602 Adaptin_N: Adaptin N 64.4 2E+02 0.0042 30.5 25.1 126 243-405 244-371 (526)
13 PLN03076 ARF guanine nucleotid 58.2 4.9E+02 0.011 33.0 27.0 272 62-348 1181-1469(1780)
14 KOG3036|consensus 56.8 46 0.00099 33.0 7.5 83 310-398 136-226 (293)
15 PF10274 ParcG: Parkin co-regu 55.3 27 0.00058 32.9 5.5 34 61-94 78-111 (183)
16 PF12830 Nipped-B_C: Sister ch 53.4 70 0.0015 29.7 8.1 85 61-151 6-95 (187)
17 KOG1062|consensus 52.8 77 0.0017 36.1 9.3 135 31-178 154-306 (866)
18 cd00020 ARM Armadillo/beta-cat 48.4 73 0.0016 25.7 6.7 108 63-170 7-119 (120)
19 PTZ00429 beta-adaptin; Provisi 47.8 4.8E+02 0.01 29.9 31.4 78 318-403 317-397 (746)
20 PF09324 DUF1981: Domain of un 47.0 46 0.00099 27.1 5.1 55 62-116 16-72 (86)
21 PF13646 HEAT_2: HEAT repeats; 46.1 1.2E+02 0.0027 23.3 7.5 65 29-115 10-74 (88)
22 PF04826 Arm_2: Armadillo-like 43.6 1.7E+02 0.0037 28.8 9.4 113 264-404 83-206 (254)
23 COG5657 CSE1 CAS/CSE protein i 35.8 1.3E+02 0.0029 34.7 8.0 120 219-357 123-246 (947)
24 KOG4524|consensus 35.8 2.1E+02 0.0045 33.6 9.5 158 7-169 795-971 (1014)
25 COG5117 NOC3 Protein involved 35.6 6.1E+02 0.013 27.5 12.3 133 7-149 357-502 (657)
26 KOG1319|consensus 32.6 3.3E+02 0.0071 25.8 8.7 53 118-170 168-224 (229)
27 PF12231 Rif1_N: Rap1-interact 32.5 5.8E+02 0.012 26.3 11.9 94 311-404 147-243 (372)
28 PF12719 Cnd3: Nuclear condens 29.8 5.6E+02 0.012 25.3 15.4 106 19-131 26-144 (298)
29 PF11864 DUF3384: Domain of un 29.4 7.1E+02 0.015 26.5 15.7 53 62-114 175-228 (464)
30 PF12755 Vac14_Fab1_bd: Vacuol 27.8 3.5E+02 0.0077 22.4 7.9 60 332-403 16-78 (97)
31 PF14500 MMS19_N: Dos2-interac 27.7 6E+02 0.013 25.0 12.4 75 310-384 92-171 (262)
32 PF10441 Urb2: Urb2/Npa2 famil 26.4 3.7E+02 0.0081 25.5 8.5 83 245-348 6-88 (223)
33 PF02985 HEAT: HEAT repeat; I 26.3 1.5E+02 0.0032 18.9 4.0 29 65-93 2-30 (31)
34 PF08167 RIX1: rRNA processing 26.1 4.9E+02 0.011 23.5 11.2 91 251-368 4-96 (165)
35 PF10508 Proteasom_PSMB: Prote 24.9 8.9E+02 0.019 26.1 24.0 139 29-170 87-230 (503)
36 PF13251 DUF4042: Domain of un 24.2 3.2E+02 0.0069 25.6 7.3 54 118-171 119-174 (182)
37 cd07439 FANCE_c-term Fanconi a 23.1 7.4E+02 0.016 24.5 10.6 125 19-145 100-238 (254)
38 PF04078 Rcd1: Cell differenti 20.9 1.2E+02 0.0026 30.2 3.9 90 310-411 107-203 (262)
39 KOG1848|consensus 20.1 1.5E+02 0.0032 36.1 4.9 78 313-390 279-358 (1610)
No 1
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=100.00 E-value=1.9e-67 Score=608.86 Aligned_cols=375 Identities=23% Similarity=0.350 Sum_probs=303.8
Q ss_pred hhHHHHHHHHHHHHHHHHHH-HhccChhHHHHHHHHHHHhhcCCCCC----------------Cccch---------hch
Q psy10883 8 ELSLKFLDSLQNDLKNLSIE-TKKKFPQIKEACEEGILKLRNVSSNP----------------QSQMH---------MVV 61 (435)
Q Consensus 8 ~~~~~~~~~L~~dL~~L~~e-~krK~~~lk~a~e~al~~Lk~~~~~~----------------~~~l~---------~~~ 61 (435)
+.-..+.+++.+.|++|++. ..|||+++|+||++|++.|+..+..+ ..|+. .++
T Consensus 5 ~~~~~~~~~~~~ale~i~~~k~~rk~~~l~~a~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (1780)
T PLN03076 5 EADSRLGKVVSPALEKIIKNASWRKHSKLAHECKAVIERLNSPEKNPPSTSSAAADSASASSLPGPLHDGGSIEYSLAES 84 (1780)
T ss_pred cccchhhHHHHHHHHHHHhhHHhhccHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccCH
Confidence 33346788999999999974 67899999999999999999765431 11222 157
Q ss_pred hHHHHHHHHHhcCCChhHHHHHHHHHHHHHccCcCCc----------cchHHHHHHHHHHhcCChh--hHHHHHHHHHHH
Q psy10883 62 NQILYPVVQGCETKDQKIIKMCISMMQRLITNQAIDQ----------KGARYITDTLWMLMESGTE--EVKILQSCTLLL 129 (435)
Q Consensus 62 ~~~l~Pf~lac~sk~~kl~~~AL~~lqKLi~~~~i~~----------~~~~~iv~~l~~~~e~~~e--qLkILQ~Ll~lv 129 (435)
+.||.||++||+||++||+.+||+||||||+|++|++ ..++.++++||+|++.++| ||||||+|+++|
T Consensus 85 ~~i~~pl~lac~s~~~ki~~~ALdcl~KLis~~~i~~~~~~~~~~~~~lid~~i~~Ic~c~~~~de~iqLqilk~Ll~~v 164 (1780)
T PLN03076 85 ELILSPLINACGTGSAKIVDPALDCIQKLIAHGYLRGEADPSGGPEALLLAKLIESVCKCHDLGDEGIELLVLKTLLSAV 164 (1780)
T ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhcCCCCCCCCCccccHHHHHHHHHHhhccCCchHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999932 3367899999999987766 999999999999
Q ss_pred hcC-CcccchHHHHHHHHHhhhc-ccCChHHHhhHHHHHHHHHHHHHhcccccccccc-------------c--C-----
Q psy10883 130 TTN-SVVHGEILAKNLVLCFRLH-FAKDSTTINTAGATVRHLVSHVFERVLLEDDQFR-------------E--E----- 187 (435)
Q Consensus 130 ts~-~~lhg~~L~~av~~C~~l~-~Sks~~v~~tA~ATL~Qiv~~VF~Rv~~~~~~~~-------------~--~----- 187 (435)
+++ +.+||+.|+++||+|||+| .||+++||+||+|||+|||+.||+||+....... + .
T Consensus 165 ~s~~~~vhg~~LLkaVR~cyni~l~Sks~~nq~tA~atLtQmv~~VF~R~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (1780)
T PLN03076 165 TSTSLRIHGDCLLQAVRTCYDIYLGSKNVVNQTTAKASLIQMLVIVFRRMEADSSTVPIQPIVVAELMEPAEKSDSDTSM 244 (1780)
T ss_pred cCCCceeEHHHHHHHHHHhheeeecCCcHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccccccch
Confidence 996 8999999999999999988 8999999999999999999999999974321000 0 0
Q ss_pred ---------------C---CCCC-----------------------CCccc---c----cCCC-----------------
Q psy10883 188 ---------------D---HKPR-----------------------NINYE---E----LKTP----------------- 202 (435)
Q Consensus 188 ---------------~---~~~~-----------------------~~~~~---~----~~~~----------------- 202 (435)
+ .++. .+.+. . .+.+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (1780)
T PLN03076 245 TQFVQGFITKIMQDIDGVLNPATAGKSSGSGAHDGAFETTATVETTNPADLLDSTDKDMLDAKYWEISMYKSALEGRKGE 324 (1780)
T ss_pred hhhhhhhhhhhccccccccCcccccccccccccccccccccccCCCCcchhhcccccccccccccccccccccccccccc
Confidence 0 0000 00000 0 0000
Q ss_pred --CCCCC--CC-----CCcchhhHHHHHHHHHHHhCCCCcchh-hcc-cchhhHhHHHHHHHHHHcCCccccCChhHHHH
Q psy10883 203 --SNIPP--KG-----IRPCAGDAYLMFQDLVQLVNTDQPYWL-IGM-TEMTRTFGLELLESILINYPSVFYKHPEFSFL 271 (435)
Q Consensus 203 --~~~~~--~~-----~~~~~~DA~lvF~dLC~Ls~~~~~~~l-~~~-~~~sk~lsLeLIesiL~~~~~~F~~~~~l~~l 271 (435)
+++.+ .. .+.+.+|||+|||.||+|+.++.|..- .+. ..++|++|||||..+|+++|++|.+|+.|+++
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~kDAflvFr~lCkLs~K~~~~~~~~d~~~~rsKllsL~Li~~ile~~g~~f~~~~~fi~~ 404 (1780)
T PLN03076 325 LADGEVEKDDDLEVQIGNKLRRDAFLVFRALCKLSMKTPPKEALADPQLMRGKILALELLKILLENAGAVFRTSDRFLGA 404 (1780)
T ss_pred cccccccccchhhhhhhhhhhhhHHHHHHHHHHHhCCCCCCCccccHHHHHHHHHHHHHHHHHHhcccHhhhcCHHHHHH
Confidence 00000 00 134789999999999999988655321 122 34799999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCccccccccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHhhCC
Q psy10883 272 LKERVCALVIKLFSPNIKYRNNALSSSGSSQQNAPLDKPYFPISVRLLRVVSILVQKYHVLLVTECEIFLSLI-IKFLDP 350 (435)
Q Consensus 272 lk~~Lcp~Llr~~s~n~~~~n~s~~~~ss~~~~~~~~~~~F~l~~r~~ri~~~Ll~~~~~~Lk~EiEvfls~l-~~~Le~ 350 (435)
||+|||.+|+||. . |+ .+++|.++ ++|||.|+.+||.+||.||||||+.+ +++||+
T Consensus 405 ik~~Lc~sL~~n~---------~----S~-------~~~vf~ls---l~If~~L~~~~R~~LK~eievF~~~I~l~ile~ 461 (1780)
T PLN03076 405 IKQYLCLSLLKNS---------A----SS-------LMIIFQLS---CSIFISLVSRFRAGLKAEIGVFFPMIVLRVLEN 461 (1780)
T ss_pred HHHHHHHHHHHHh---------c----CC-------CHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999975 2 23 46788876 56999999999999999999999865 699987
Q ss_pred C-C-ChHHHHHHHHHHHHhhcChHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhhh
Q psy10883 351 D-K-PVWQRSLALEVLHKLCVQTELLKAFCQSYDLKDHTTHIFQDIVNSLATYVHSV 405 (435)
Q Consensus 351 ~-~-~~wqk~l~LEvl~~ic~dp~~l~~iy~nYDcd~~~~nIfe~lv~~Lsk~~q~~ 405 (435)
. + ++.||+++||+|.+||+||++++|||+|||||.++.||||+|++.|+|++|+.
T Consensus 462 ~~~~s~~qK~~~L~~L~~lc~dp~~lveiyvNYDCD~~~~NifE~lv~~Lsk~a~~~ 518 (1780)
T PLN03076 462 VAQPNFQQKMIVLRFLDKLCVDSQILVDIFINYDCDVNSSNIFERMVNGLLKTAQGV 518 (1780)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCccHHHHHHhccCCCCCCchHHHHHHHHHHHHhcCC
Confidence 4 3 48999999999999999999999999999999999999999999999999963
No 2
>KOG0929|consensus
Probab=100.00 E-value=2.7e-52 Score=468.05 Aligned_cols=357 Identities=21% Similarity=0.337 Sum_probs=293.0
Q ss_pred HHHHHHHHHHH-HhccChhHHHHHHHHHHHhhcCCCCCCccchhchhHHHHHHHHHhcCCChhHHHHHHHHHHHHHccCc
Q psy10883 17 LQNDLKNLSIE-TKKKFPQIKEACEEGILKLRNVSSNPQSQMHMVVNQILYPVVQGCETKDQKIIKMCISMMQRLITNQA 95 (435)
Q Consensus 17 L~~dL~~L~~e-~krK~~~lk~a~e~al~~Lk~~~~~~~~~l~~~~~~~l~Pf~lac~sk~~kl~~~AL~~lqKLi~~~~ 95 (435)
+...+++++++ .+|+|..++.+|+.+++.++..... ..+++.++.||.+||+||++||+..|++|+||||+|++
T Consensus 3 v~~~~~ki~~~~~~~~~s~l~~~~~~~~~~~~~~~~~-----~~~~e~~~~p~~la~~t~~~ki~~~~~dc~~kli~~~~ 77 (1514)
T KOG0929|consen 3 VSSALEKILADAEWRKHSKLKKACKSALEELKANGLS-----LAEAELYLLPFELACDTKSPKIVSPALDCLQKLIAYGH 77 (1514)
T ss_pred ccccHHHHhhhhhhhhHHHHHHHHHHHHHhhhcccCC-----CcchhhhhChHHhhcCCCCcchhccHHHHHHHHHHhhh
Confidence 34567777775 5779999999999999999993311 12679999999999999999999999999999999999
Q ss_pred CCccc----------hHHHHHHHHHHhcCChh--hHHHHHHHHHHHhcC-CcccchHHHHHHHHHhhhc-ccCChHHHhh
Q psy10883 96 IDQKG----------ARYITDTLWMLMESGTE--EVKILQSCTLLLTTN-SVVHGEILAKNLVLCFRLH-FAKDSTTINT 161 (435)
Q Consensus 96 i~~~~----------~~~iv~~l~~~~e~~~e--qLkILQ~Ll~lvts~-~~lhg~~L~~av~~C~~l~-~Sks~~v~~t 161 (435)
+.++. +..+++++|.|++...| ||+++++|++.|++. +.+||++|+.++|+||++| .| +++|+|
T Consensus 78 l~g~~~~~~~~~~~l~~~~~~~vc~~~~~~~e~~elq~~k~lL~av~s~~~~i~~~~ll~~vr~c~~iyl~s--~~nq~~ 155 (1514)
T KOG0929|consen 78 LTGESNDSGGPEDLLIDKIIEAVCKCFDGLDESVELQVLKALLAAVTSQHIEIHGDSLLLIVRTCYNIYLGS--PINQTT 155 (1514)
T ss_pred ccCCCCCCCCcchhHHHHHHhHhhhccCCCchhhhHhHHHHHHHHHhccceeecCcchHHHHHHHHHHHhcC--cccchH
Confidence 96442 57899999999987655 999999999999984 8999999999999999998 55 999999
Q ss_pred HHHHHHHHHHHHHhcccccccccc-------------cCCCC------------CC-CCccc----ccCC----------
Q psy10883 162 AGATVRHLVSHVFERVLLEDDQFR-------------EEDHK------------PR-NINYE----ELKT---------- 201 (435)
Q Consensus 162 A~ATL~Qiv~~VF~Rv~~~~~~~~-------------~~~~~------------~~-~~~~~----~~~~---------- 201 (435)
|++||+||++.||.|++.+....+ ++..+ +. .+.++ .++.
T Consensus 156 ak~~L~qml~~vf~~~e~~~~~~~~i~vs~~~~~~~~~~s~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (1514)
T KOG0929|consen 156 AKATLTQMLNIVFRRMEEDSSDESQILVSELLRVSDDPSSTEFVQQFIDSIMEVLVASPEDVGLTEMLDDNVNENSKTGD 235 (1514)
T ss_pred HHHHHHHHHHHHHHHhhhccCcccccccccccccCCCcchhHHHHHHHHHHHHhccCCccccccccccccccccccccCc
Confidence 999999999999999986532100 00000 00 00000 0000
Q ss_pred -----------CCCC-----CCCCCCcchhhHHHHHHHHHHHhCCCCcc---hhhcccchhhHhHHHHHHHHHHcCCccc
Q psy10883 202 -----------PSNI-----PPKGIRPCAGDAYLMFQDLVQLVNTDQPY---WLIGMTEMTRTFGLELLESILINYPSVF 262 (435)
Q Consensus 202 -----------~~~~-----~~~~~~~~~~DA~lvF~dLC~Ls~~~~~~---~l~~~~~~sk~lsLeLIesiL~~~~~~F 262 (435)
...+ .....++..+|||+|||.||+|+.+..+. ..+.. .++|+++|||+..||+|++++|
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Daflvfr~Lckls~k~~s~~~~d~~s~-~R~k~lsl~ll~~il~~~~~vf 314 (1514)
T KOG0929|consen 236 SLSLRDAESPESESERDDDSERSSQNKLQRDAFLVFRALCKLSMKPLSSEESDTQSH-MRSKLLSLELLKSILENSGSVF 314 (1514)
T ss_pred ccccCcccccccccccCcchhhccccHHHHhHHHHHHHHHHhhCCCCCCCCCChHHH-HhhhHHHHHHHHHHHhccchhh
Confidence 0000 01235789999999999999999876543 22122 5799999999999999999999
Q ss_pred cCChhHHHHHHHHHHHHHHHhcCccccccccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy10883 263 YKHPEFSFLLKERVCALVIKLFSPNIKYRNNALSSSGSSQQNAPLDKPYFPISVRLLRVVSILVQKYHVLLVTECEIFLS 342 (435)
Q Consensus 263 ~~~~~l~~llk~~Lcp~Llr~~s~n~~~~n~s~~~~ss~~~~~~~~~~~F~l~~r~~ri~~~Ll~~~~~~Lk~EiEvfls 342 (435)
.++..|++.+|||||.+|.||- . |+ .+++|+++ +.|||.|+.+||+++|.|+|||++
T Consensus 315 ~s~~~fi~aikqyKOGalskn~---------v----S~-------~~~vfe~s---~~If~~lls~~r~~~K~ei~vff~ 371 (1514)
T KOG0929|consen 315 RSNEHFIDAIKQYLCLALSKNS---------V----SN-------VPMVFELS---CTIFVSLLSNFRTHLKAEIEVFFS 371 (1514)
T ss_pred cCchhhHHHHHHHHHHHHhhcc---------c----cc-------chHHHHHH---HHHHHHHHHhcccccccccccchh
Confidence 9999999999999999999952 3 33 56888865 579999999999999999999999
Q ss_pred HH-HHhhCCC-CChHHHHHHHHHHHHhhcChHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhh
Q psy10883 343 LI-IKFLDPD-KPVWQRSLALEVLHKLCVQTELLKAFCQSYDLKDHTTHIFQDIVNSLATYVHS 404 (435)
Q Consensus 343 ~l-~~~Le~~-~~~wqk~l~LEvl~~ic~dp~~l~~iy~nYDcd~~~~nIfe~lv~~Lsk~~q~ 404 (435)
++ ++++|.. ++..||+++|.++.++|.||+.++++|.|||||.+..||||++++.++|++|+
T Consensus 372 ~i~~~ile~~t~s~~qk~~~l~~~~~ic~d~q~~Vdi~vnydcd~~~~nifer~v~~ltk~a~g 435 (1514)
T KOG0929|consen 372 EIFLRILENNTSSFQQKMMVLRILTRICADPQTLVDIYVNYDCDSNSQNIFERLVNGLSKIAQG 435 (1514)
T ss_pred hhhhhhhhcCCCcccchhHHHHHHhhhcCCCccccccccCCccccCCccHHHHHHhhHHHhhcC
Confidence 66 5888854 47899999999999999999999999999999999999999999999999999
No 3
>KOG1848|consensus
Probab=100.00 E-value=7e-45 Score=399.47 Aligned_cols=396 Identities=23% Similarity=0.372 Sum_probs=331.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHhhcCCCCCCccchh--chhHHHHHHHHHhcCCChhHHHHHHHH
Q psy10883 9 LSLKFLDSLQNDLKNLSIETKKKFPQIKEACEEGILKLRNVSSNPQSQMHM--VVNQILYPVVQGCETKDQKIIKMCISM 86 (435)
Q Consensus 9 ~~~~~~~~L~~dL~~L~~e~krK~~~lk~a~e~al~~Lk~~~~~~~~~l~~--~~~~~l~Pf~lac~sk~~kl~~~AL~~ 86 (435)
...+|++.|..||++|++|+||||+++|+|+|++++.||+..+.++..... ..++++.||++||++|+.|++.+||+|
T Consensus 7 ~~~sl~~aL~adLrsLsseArkKnn~VK~aAdkSi~~Lr~isS~s~ds~vlet~~edf~~PfllaC~sr~tRl~~ials~ 86 (1610)
T KOG1848|consen 7 NIMSLVRALLADLRSLSSEARKKNNEVKLAADKSIQELRQISSASRDSDVLETPNEDFLVPFLLACISRNTRLFVIALSC 86 (1610)
T ss_pred cHHHHHHHHHHHHHHhhHHHHhhchHHHHHHHhHHHHHHhhccccccccccccCCcccccceeeecccCcccceeeHHHH
Confidence 356899999999999999999999999999999999999988765322111 157999999999999999999999999
Q ss_pred HHHHHccCcCCccc-hHHHHHHHHHHhcCChhhHHHHHHHHHHHhcC-CcccchHHHHHHHHHhhhcccCChHHHhhHHH
Q psy10883 87 MQRLITNQAIDQKG-ARYITDTLWMLMESGTEEVKILQSCTLLLTTN-SVVHGEILAKNLVLCFRLHFAKDSTTINTAGA 164 (435)
Q Consensus 87 lqKLi~~~~i~~~~-~~~iv~~l~~~~e~~~eqLkILQ~Ll~lvts~-~~lhg~~L~~av~~C~~l~~Sks~~v~~tA~A 164 (435)
||||..|+.++++. .+.+-+.+|...++...|||+||++|.+++++ ..+.|+.+.+++++|||+|.+|+++|.|||+|
T Consensus 87 iQkL~~~dsleps~~aeildn~L~a~~qae~~QLrvLQtiPii~~syl~fi~~p~l~kll~iCfnLl~~knkvV~NaAaA 166 (1610)
T KOG1848|consen 87 IQKLGRHDSLEPSVTAEILDNNLWAAAQAEWIQLRVLQTIPIIFFSYLTFITGPPLLKLLIICFNLLYQKNKVVFNAAAA 166 (1610)
T ss_pred HHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHhhhccccceeeeceeeccCcHHHHHHHHHHHHHcCCCcceechhHH
Confidence 99999999999954 44555667887777555999999999999998 66999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccccccccCCCCCCCCcccccCCCCCCCCCCCCcchhhHHHHHHHHHHHhCCCCcchhhcccchhh
Q psy10883 165 TVRHLVSHVFERVLLEDDQFREEDHKPRNINYEELKTPSNIPPKGIRPCAGDAYLMFQDLVQLVNTDQPYWLIGMTEMTR 244 (435)
Q Consensus 165 TL~Qiv~~VF~Rv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DA~lvF~dLC~Ls~~~~~~~l~~~~~~sk 244 (435)
|+||+|..|||||..+....+...+ ......+.......+...++..+|++..|.++|.+..+..+.|+..+.+.++
T Consensus 167 tlrQlV~~vFdrv~ies~~~d~~l~---sl~~~s~t~sl~aa~~~~~~l~~dI~~~~~~i~l~~~~~~~~~L~~Iee~~~ 243 (1610)
T KOG1848|consen 167 TLRQLVLLVFDRVPIESDAFDFILP---SLTEASGTSSLEAALTALDPLQKDICVGFENIQLMYPAIFDQLLAFIEESTK 243 (1610)
T ss_pred HHHHHHHHHHHhcccccccccccch---hhhccCCccchhhcccccchHHHhHhcchHHHHHhcccccHhHHhcchhccc
Confidence 9999999999999976553332211 0000011111112235678999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHcCCccccCChhHH--HHHHHHHHHHHHHhcCccccccccc-cCC---------------CCCCCCCCC
Q psy10883 245 TFGLELLESILINYPSVFYKHPEFS--FLLKERVCALVIKLFSPNIKYRNNA-LSS---------------SGSSQQNAP 306 (435)
Q Consensus 245 ~lsLeLIesiL~~~~~~F~~~~~l~--~llk~~Lcp~Llr~~s~n~~~~n~s-~~~---------------~ss~~~~~~ 306 (435)
..|+|++|+++.+....+-.+.+|. ++++...||.+.|.+++++.++... +|. ++...+-.-
T Consensus 244 s~~~elLesilks~~s~~dq~qdf~~a~ll~~~~~Py~~Rl~~~sv~~i~~l~~~ea~~~~ev~lnvi~slisn~~ll~~ 323 (1610)
T KOG1848|consen 244 SPGLELLESILKSNASKSDQIQDFAPAELLALNVVPYAERLLLRSVDLIQKLACHEAVVNEEVLLNVIKSLISNTNLLFD 323 (1610)
T ss_pred cchhhhhhhhhhcchhhhHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhcccccc
Confidence 9999999999999999999999999 9999999999999998887753222 221 221111111
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcChHHHHHHHHhcCCCCC
Q psy10883 307 LDKPYFPISVRLLRVVSILVQKYHVLLVTECEIFLSLIIKFLDPDKPVWQRSLALEVLHKLCVQTELLKAFCQSYDLKDH 386 (435)
Q Consensus 307 ~~~~~F~l~~r~~ri~~~Ll~~~~~~Lk~EiEvfls~l~~~Le~~~~~wqk~l~LEvl~~ic~dp~~l~~iy~nYDcd~~ 386 (435)
.+...||+..++.+.....+.-|-..+..+++||++.+++.=..+.+.|+|.+.++++++||.+++.+..++.|+||+..
T Consensus 324 ~~~~s~~~~kdlv~~l~~~v~l~~~~i~v~~~v~la~~lk~~s~~~~~~p~~l~~~~~~siv~k~dsi~~~trn~diktk 403 (1610)
T KOG1848|consen 324 PESLSYPCSKDLVWKLAVSVLLYVLSIGVPVAVFLASLLKFDSMDLELWPRFLDFLFLKSIVPKNDSIQIFTRNFDIKTK 403 (1610)
T ss_pred hhhccccccHHHHhHHhHHHheeecccCcchhhhHHHHhhhhhcCcccCccHhHHHhhccCCCCchhhHHHHhhcccCcc
Confidence 25677888888888888888888888999999999999988888888999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHhhhhc
Q psy10883 387 TTHIFQDIVNSLATYVHSVFL 407 (435)
Q Consensus 387 ~~nIfe~lv~~Lsk~~q~~~~ 407 (435)
.+++++..+-.+++|++..+.
T Consensus 404 ~thlldk~~~plan~vy~~lv 424 (1610)
T KOG1848|consen 404 VTHLLDKEILPLANFVYKELV 424 (1610)
T ss_pred hHHHHhhcccccchhHHHHHH
Confidence 999999999999999995443
No 4
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=100.00 E-value=2.6e-37 Score=283.27 Aligned_cols=157 Identities=39% Similarity=0.653 Sum_probs=142.8
Q ss_pred CcchhhHHHHHHHHHHHh-----CCCCcchhhcccchhhHhHHHHHHHHHHcCCcccc---CChhHHHHHHHHHHHHHHH
Q psy10883 211 RPCAGDAYLMFQDLVQLV-----NTDQPYWLIGMTEMTRTFGLELLESILINYPSVFY---KHPEFSFLLKERVCALVIK 282 (435)
Q Consensus 211 ~~~~~DA~lvF~dLC~Ls-----~~~~~~~l~~~~~~sk~lsLeLIesiL~~~~~~F~---~~~~l~~llk~~Lcp~Llr 282 (435)
+++.+||++|||+||+|+ .+++|+|+ +...++|.+|||||+++|+++|+.|. +|++|.+++|+++||.|++
T Consensus 2 ~~~~~Da~~vf~~Lc~L~~~~~~~~~~~~~~-~~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~ 80 (168)
T PF12783_consen 2 NYYVKDAFLVFRDLCSLSSKPSDPGNSPDFL-SHDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLK 80 (168)
T ss_pred chhHHHHHHHHHHHHHHhCCCCCCCCCcchh-hhhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHH
Confidence 578999999999999999 45557777 57789999999999999999999999 6669999999999999999
Q ss_pred hcCccccccccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhhCCCC-ChHHHHHH
Q psy10883 283 LFSPNIKYRNNALSSSGSSQQNAPLDKPYFPISVRLLRVVSILVQKYHVLLVTECEIFLSLII-KFLDPDK-PVWQRSLA 360 (435)
Q Consensus 283 ~~s~n~~~~n~s~~~~ss~~~~~~~~~~~F~l~~r~~ri~~~Ll~~~~~~Lk~EiEvfls~l~-~~Le~~~-~~wqk~l~ 360 (435)
++. .+.|++..+++|+|+.++.+||.+||.|+|+|++.++ ++|+++. |.|||+++
T Consensus 81 ~~~-----------------------~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~ 137 (168)
T PF12783_consen 81 NLS-----------------------SSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELA 137 (168)
T ss_pred HHh-----------------------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHH
Confidence 762 1348888899999999999999999999999999776 5898776 68999999
Q ss_pred HHHHHHhhcChHHHHHHHHhcCCCCCCchHH
Q psy10883 361 LEVLHKLCVQTELLKAFCQSYDLKDHTTHIF 391 (435)
Q Consensus 361 LEvl~~ic~dp~~l~~iy~nYDcd~~~~nIf 391 (435)
||+++++|+||++++|+|.|||||.+++|||
T Consensus 138 Le~l~~l~~~p~~l~~lf~NYDCd~~~~nif 168 (168)
T PF12783_consen 138 LEILRELCKDPQFLVDLFVNYDCDLNSKNIF 168 (168)
T ss_pred HHHHHHHHhChhHHHHHHHHcCCCCCCCCCC
Confidence 9999999999999999999999999999997
No 5
>KOG0928|consensus
Probab=99.95 E-value=3.7e-26 Score=253.48 Aligned_cols=321 Identities=20% Similarity=0.247 Sum_probs=245.6
Q ss_pred chhHHHHHHHHHhcCC--ChhHHHHHHHHHHHHHccCcCCcc------chHHHHHHHHHH-hcCC----hh--hHHHHHH
Q psy10883 60 VVNQILYPVVQGCETK--DQKIIKMCISMMQRLITNQAIDQK------GARYITDTLWML-MESG----TE--EVKILQS 124 (435)
Q Consensus 60 ~~~~~l~Pf~lac~sk--~~kl~~~AL~~lqKLi~~~~i~~~------~~~~iv~~l~~~-~e~~----~e--qLkILQ~ 124 (435)
++..|++||+..+.|. ++.||..||++++|.++++.|+++ ++..+++++++| |+.+ +| -|||||+
T Consensus 66 dp~~~L~PFL~vI~s~~~~g~iTslALssv~Kflt~~iid~~s~n~~~am~~~v~AvthcRFe~td~~Sde~Vllkilqv 145 (1386)
T KOG0928|consen 66 DPLTYLSPFLEVIKSDETTGPITSLALSSVLKFLTLNIIDESSPNAADAMRNIVDAVTHCRFEGTDPASDEVVLLKILQV 145 (1386)
T ss_pred ChHhHHhHHHHHHhcccCCccHHHHHHHHHHHHheeeecCccCccHHHHHHHHHHHHHheeeeccCccchhHHHHHHHHH
Confidence 6789999999999876 689999999999999999999876 478899999999 6653 23 8999999
Q ss_pred HHHHHhcC--CcccchHHHHHHHHHhhhc--ccCChHHHhhHHHHHHHHHHHHHhcccccccc-cc----------c---
Q psy10883 125 CTLLLTTN--SVVHGEILAKNLVLCFRLH--FAKDSTTINTAGATVRHLVSHVFERVLLEDDQ-FR----------E--- 186 (435)
Q Consensus 125 Ll~lvts~--~~lhg~~L~~av~~C~~l~--~Sks~~v~~tA~ATL~Qiv~~VF~Rv~~~~~~-~~----------~--- 186 (435)
|.++|.++ ..+.++.++.+|.+|+++. ..++.+.+.+|+.||.-|+..+|.|++.-+.. .+ +
T Consensus 146 Lr~lm~sp~~~lLSnq~Ic~ivqTcl~v~~q~~lselLr~~Ae~Tm~~~~~~IFsrLk~~~~~~~~~~~~~~es~~~~~~ 225 (1386)
T KOG0928|consen 146 LRSLMDSPAGALLSNQIICDIVQTCLRVVCQSRLSELLRKSAEHTMHDLTQLIFSRLKYIEPPYVNEMYINDESYQGNVL 225 (1386)
T ss_pred HHHHHhCchhhhcchhHHHHHHHHHHHHHHHHhHHHHhhcchhhhHHHHHHHHHHhCccccccccchhhcchHhhhcccc
Confidence 99999994 7789999999999999954 46899999999999999999999999875521 00 0
Q ss_pred -CCC-C-CCCCcccccC--------CC----CCCCC-------------------CCCCcchhh-HHHHHHHHHHHhCCC
Q psy10883 187 -EDH-K-PRNINYEELK--------TP----SNIPP-------------------KGIRPCAGD-AYLMFQDLVQLVNTD 231 (435)
Q Consensus 187 -~~~-~-~~~~~~~~~~--------~~----~~~~~-------------------~~~~~~~~D-A~lvF~dLC~Ls~~~ 231 (435)
+.. . -+.++..... .. ..+.| .....|+.. .-..|..||.|.+..
T Consensus 226 ~~~~i~~k~~en~e~~~~~~~a~~~~~~~~~~~~~~v~~~~~~~~~~~e~a~~~~~~~~~ygip~~~~~~h~l~sl~~~~ 305 (1386)
T KOG0928|consen 226 KDDFIGTKRVENGEISSEDESATFDDGSISEKFEVPVQQVDREQETDEENAEAMAAMDENYGIPVMKDIFHFLLSLLNVT 305 (1386)
T ss_pred cccccCcccCCCCCccCcccccccccccccccccCCccccccccCChhhhhhHhhcccccCCCceeccchhhhhhhcccc
Confidence 000 0 0000100000 00 00000 001122211 356788899998876
Q ss_pred CcchhhcccchhhHhHHHHHHHHHHcCCccccCChhHHHHHHHHHHHHHHHhcCccccccccccCCCCCCCCCCCCCCCc
Q psy10883 232 QPYWLIGMTEMTRTFGLELLESILINYPSVFYKHPEFSFLLKERVCALVIKLFSPNIKYRNNALSSSGSSQQNAPLDKPY 311 (435)
Q Consensus 232 ~~~~l~~~~~~sk~lsLeLIesiL~~~~~~F~~~~~l~~llk~~Lcp~Llr~~s~n~~~~n~s~~~~ss~~~~~~~~~~~ 311 (435)
.+. .....-+.++|.||++.++-.|+.|+.||.|..++.+.+...++..+...++ .+-
T Consensus 306 n~~---~~~es~~~~~l~lin~aie~~g~~i~~~prll~liqd~~fk~l~~~~~~~~k-------------------~s~ 363 (1386)
T KOG0928|consen 306 NTV---AHDESVRSFALVLINSAIELGGDCIREHPRLLRLIQDPLFKHLIEFLQIPTK-------------------MSL 363 (1386)
T ss_pred ccc---cchhhhhHHHHHHHHhhHhhcchHHHHhhHHHHHhccHHHHHHHHHHhhccc-------------------chh
Confidence 543 3344589999999999999999999999999999999999999887521111 112
Q ss_pred hHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-h--CCCCChHHHHHHHHHHHHhhcChHHHHHHHHhcCCCCCC
Q psy10883 312 FPISVR-LLRVVSILVQKYHVLLVTECEIFLSLIIKF-L--DPDKPVWQRSLALEVLHKLCVQTELLKAFCQSYDLKDHT 387 (435)
Q Consensus 312 F~l~~r-~~ri~~~Ll~~~~~~Lk~EiEvfls~l~~~-L--e~~~~~wqk~l~LEvl~~ic~dp~~l~~iy~nYDcd~~~ 387 (435)
-+.+++ .+.++..|....+.++|.+.|.||+.+..+ . +...|+.||.+++|.+-.+|+.|.++.++|.|||||..+
T Consensus 364 ~~~~Lql~~s~vl~l~~~lr~~~k~qle~~Fs~l~~~~~~~~~~~~~~~~e~ale~lv~~~R~p~F~~e~yvNfDCd~~c 443 (1386)
T KOG0928|consen 364 ERLVLQLFCSLVLNLYLALREQLKLQLEAFFSILLLRGTAEEYGPPYEQQEVALEALVLLCRIPSFLTEMYVNFDCDLYC 443 (1386)
T ss_pred hHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHhcCCchhh
Confidence 232232 456777888889999999999999977644 3 334478999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHH
Q psy10883 388 THIFQDIVNSLATYV 402 (435)
Q Consensus 388 ~nIfe~lv~~Lsk~~ 402 (435)
.||||++++.|+|.+
T Consensus 444 snlfedl~k~Ltkna 458 (1386)
T KOG0928|consen 444 SNLFEDLIKLLTKNA 458 (1386)
T ss_pred hhhHHHHHHHHHHcc
Confidence 999999999998853
No 6
>COG5307 SEC7 domain proteins [General function prediction only]
Probab=98.26 E-value=7.9e-07 Score=101.00 Aligned_cols=139 Identities=13% Similarity=0.137 Sum_probs=116.1
Q ss_pred cchhhHhHHHHHHHHHHcCCccccCChhHHHHHHHHHHHHHHHhcCccccccccccCCCCCCCCCCCCCCCchHHHHHHH
Q psy10883 240 TEMTRTFGLELLESILINYPSVFYKHPEFSFLLKERVCALVIKLFSPNIKYRNNALSSSGSSQQNAPLDKPYFPISVRLL 319 (435)
Q Consensus 240 ~~~sk~lsLeLIesiL~~~~~~F~~~~~l~~llk~~Lcp~Llr~~s~n~~~~n~s~~~~ss~~~~~~~~~~~F~l~~r~~ 319 (435)
..+++..||+++.++|..|. .|..++++++|..+.++. - |+ ..++|++.+
T Consensus 24 ~~r~~l~~l~~~~~~l~~~~-------~l~~~~~~~~~l~~~~~a---------~----s~-------~~~v~~v~~--- 73 (1024)
T COG5307 24 AVRSKLYSLPVSYSILRDFK-------LLLDLLFPYLRLKLSLSA---------R----SP-------LLPVFEVGL--- 73 (1024)
T ss_pred hcccccccccchHHHhccch-------HHHHHhcchhhhhhhhcc---------c----cc-------chhhhhhhH---
Confidence 44799999999999999776 899999999999888742 1 22 357788765
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHH-HHHHhhCCCC-ChHHHHHHHHHHHHhhcChHHHHHHHHhcCCCCC-CchHHHHHHH
Q psy10883 320 RVVSILVQKYHVLLVTECEIFLS-LIIKFLDPDK-PVWQRSLALEVLHKLCVQTELLKAFCQSYDLKDH-TTHIFQDIVN 396 (435)
Q Consensus 320 ri~~~Ll~~~~~~Lk~EiEvfls-~l~~~Le~~~-~~wqk~l~LEvl~~ic~dp~~l~~iy~nYDcd~~-~~nIfe~lv~ 396 (435)
.|+|..+..++..++.|+++|+. ++..+++..+ ...|+.+-|-..+++|..|+ ++.|+||||... +.|+.++...
T Consensus 74 ~i~~~~~~~~~~~f~~~~~~~f~s~~f~i~~~~~~s~~q~~~~l~~~~~~~~~~r--l~~~i~~d~~~~~~~~~~~~~~~ 151 (1024)
T COG5307 74 EIIGLRLSNLPKLFKLESSVFFISIYFPISHTTSTSLQQKSSELSTSQVVILLSR--LERYINYDVGRGFMENITERTAF 151 (1024)
T ss_pred HHHHHHHhhhhhhhhhccchHHHHHhhhhhcccccchhhhhHHhHhhhhhhcccc--hhhhcccccccccchhhhhccCC
Confidence 59999999999999999999996 4456777655 56899999999999999999 999999999998 8999999999
Q ss_pred HHHHHHhhhhcCCCCCC
Q psy10883 397 SLATYVHSVFLNSSPSL 413 (435)
Q Consensus 397 ~Lsk~~q~~~~~~~~~~ 413 (435)
.+++.+ ..+|+...
T Consensus 152 ~~s~~~---t~~p~~~~ 165 (1024)
T COG5307 152 PLSRPS---TNDPPETR 165 (1024)
T ss_pred cccccc---ccCCCcch
Confidence 888887 45554443
No 7
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=93.27 E-value=13 Score=39.45 Aligned_cols=106 Identities=15% Similarity=0.246 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHhccChhHHHHHHHHHHHhhcCCCCCCccchhchhH-HHHHHHHHhcCCChhHHHHHHHHHHHH-Hc
Q psy10883 15 DSLQNDLKNLSIETKKKFPQIKEACEEGILKLRNVSSNPQSQMHMVVNQ-ILYPVVQGCETKDQKIIKMCISMMQRL-IT 92 (435)
Q Consensus 15 ~~L~~dL~~L~~e~krK~~~lk~a~e~al~~Lk~~~~~~~~~l~~~~~~-~l~Pf~lac~sk~~kl~~~AL~~lqKL-i~ 92 (435)
+.+..++..+.+ -++|.+|+++=-++-.+-...+. ..+. ++.++.-....+++.+...|+..+..+ -.
T Consensus 113 ~~l~~~v~~ll~---~~~~~VRk~A~~~l~~i~~~~p~-------~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~ 182 (526)
T PF01602_consen 113 EPLIPDVIKLLS---DPSPYVRKKAALALLKIYRKDPD-------LVEDELIPKLKQLLSDKDPSVVSAALSLLSEIKCN 182 (526)
T ss_dssp HHHHHHHHHHHH---SSSHHHHHHHHHHHHHHHHHCHC-------CHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHhc---CCchHHHHHHHHHHHHHhccCHH-------HHHHHHHHHHhhhccCCcchhHHHHHHHHHHHccC
Confidence 334444444443 35667777554444333222211 1122 788888888888999999999999888 11
Q ss_pred cCcCCccchHHHHHHHHHHhcCChh--hHHHHHHHHHHHhc
Q psy10883 93 NQAIDQKGARYITDTLWMLMESGTE--EVKILQSCTLLLTT 131 (435)
Q Consensus 93 ~~~i~~~~~~~iv~~l~~~~e~~~e--qLkILQ~Ll~lvts 131 (435)
.+... ..++.+++.++..+....+ |.++++++..+...
T Consensus 183 ~~~~~-~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~ 222 (526)
T PF01602_consen 183 DDSYK-SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPM 222 (526)
T ss_dssp HHHHT-THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSS
T ss_pred cchhh-hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccC
Confidence 11111 4456677777766554444 88888887765544
No 8
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=85.98 E-value=39 Score=33.65 Aligned_cols=68 Identities=7% Similarity=0.073 Sum_probs=49.4
Q ss_pred cChhHHHHHHHHH-HHhhcCCCCCCcc-----chhchhHHHHHHHHHhcCCChhHHHHHHHHHHHHHccCcCCc
Q psy10883 31 KFPQIKEACEEGI-LKLRNVSSNPQSQ-----MHMVVNQILYPVVQGCETKDQKIIKMCISMMQRLITNQAIDQ 98 (435)
Q Consensus 31 K~~~lk~a~e~al-~~Lk~~~~~~~~~-----l~~~~~~~l~Pf~lac~sk~~kl~~~AL~~lqKLi~~~~i~~ 98 (435)
-++++|..+=+++ +.+.......... -......+++.|.-..++.++++..+|..++-||+-+|.+.+
T Consensus 76 ~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~ 149 (298)
T PF12719_consen 76 DDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD 149 (298)
T ss_pred CCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc
Confidence 4777887776665 5555443321110 012356888999999999999999999999999999999987
No 9
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=81.88 E-value=43 Score=31.41 Aligned_cols=136 Identities=19% Similarity=0.204 Sum_probs=76.6
Q ss_pred hhHhHHHHHHHHHHcCCccccCChhHHHHHHHHHHHHHHHhcCccccccccccCCCCCCCCCCCCCCCchHHHHHHHHHH
Q psy10883 243 TRTFGLELLESILINYPSVFYKHPEFSFLLKERVCALVIKLFSPNIKYRNNALSSSGSSQQNAPLDKPYFPISVRLLRVV 322 (435)
Q Consensus 243 sk~lsLeLIesiL~~~~~~F~~~~~l~~llk~~Lcp~Llr~~s~n~~~~n~s~~~~ss~~~~~~~~~~~F~l~~r~~ri~ 322 (435)
.+.=+|+-|..++..+ .--...+.|...+| .+...+.+.++ .....|+...+.++
T Consensus 23 ~r~~al~~L~~l~~~~-~~~~~~~~~~~~l~-~~~~~i~~~l~-----------------------d~Rs~v~~~A~~~l 77 (228)
T PF12348_consen 23 ERVEALQKLRSLIKGN-APEDFPPDFVECLR-QLLDAIIKQLS-----------------------DLRSKVSKTACQLL 77 (228)
T ss_dssp HHHHHHHHHHHHHHH--B-----HHHHHHHH----HHHHH-S------------------------HH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-CccccHHHHHHHHH-HhHHHHHHHHh-----------------------hhHHHHHHHHHHHH
Confidence 6778999999999988 22234577888888 55566666442 11234555678888
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcChH----HHHHHHHhcCCCCCCchHHHHHHHHH
Q psy10883 323 SILVQKYHVLLVTECEIFLSLIIKFLDPDKPVWQRSLALEVLHKLCVQTE----LLKAFCQSYDLKDHTTHIFQDIVNSL 398 (435)
Q Consensus 323 ~~Ll~~~~~~Lk~EiEvfls~l~~~Le~~~~~wqk~l~LEvl~~ic~dp~----~l~~iy~nYDcd~~~~nIfe~lv~~L 398 (435)
..+...++..+...++.++..+++.+...+ .+-+.-+.++|..++..-. .+..+... =+....+.+=...++.+
T Consensus 78 ~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~-~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~-~~~~Kn~~vR~~~~~~l 155 (228)
T PF12348_consen 78 SDLARQLGSHFEPYADILLPPLLKKLGDSK-KFIREAANNALDAIIESCSYSPKILLEILSQ-GLKSKNPQVREECAEWL 155 (228)
T ss_dssp HHHHHHHGGGGHHHHHHHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--HHHHHHHHH-HTT-S-HHHHHHHHHHH
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHcccc-HHHHHHHHHHHHHHHHHCCcHHHHHHHHHHH-HHhCCCHHHHHHHHHHH
Confidence 899899999888888888888887765443 4556666666666655444 32333222 22333344545555555
Q ss_pred HHHHhhh
Q psy10883 399 ATYVHSV 405 (435)
Q Consensus 399 sk~~q~~ 405 (435)
..+++..
T Consensus 156 ~~~l~~~ 162 (228)
T PF12348_consen 156 AIILEKW 162 (228)
T ss_dssp HHHHTT-
T ss_pred HHHHHHc
Confidence 5554443
No 10
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=71.02 E-value=45 Score=31.25 Aligned_cols=65 Identities=17% Similarity=0.214 Sum_probs=37.4
Q ss_pred HHHHHHhccChhHHHHHHHHHHHhhcCCCCCCccchhchhHH-HHHHHHHhcCCChhHHHHHHHHHHHHHccCc
Q psy10883 23 NLSIETKKKFPQIKEACEEGILKLRNVSSNPQSQMHMVVNQI-LYPVVQGCETKDQKIIKMCISMMQRLITNQA 95 (435)
Q Consensus 23 ~L~~e~krK~~~lk~a~e~al~~Lk~~~~~~~~~l~~~~~~~-l~Pf~lac~sk~~kl~~~AL~~lqKLi~~~~ 95 (435)
.|..-...+.+.++++++.++..+=...+. ...+ +..+..++.+||+++-..++.++...+..--
T Consensus 98 ~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~--------~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 98 PLLKKLGDSKKFIREAANNALDAIIESCSY--------SPKILLEILSQGLKSKNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp HHHHGGG---HHHHHHHHHHHHHHHTTS-H----------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHccccHHHHHHHHHHHHHHHHHCCc--------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence 333334445567888888887666554320 1244 6666677888888888888888887766544
No 11
>PTZ00429 beta-adaptin; Provisional
Probab=67.74 E-value=2.3e+02 Score=32.45 Aligned_cols=88 Identities=7% Similarity=0.035 Sum_probs=41.4
Q ss_pred cCCChhHHHHHHHHHHHHHccCcCCccchHHHHHHHHHHhcCChh--hHHHHHHHHHHHhcCCcccchHHHHHHHHHhh-
Q psy10883 73 ETKDQKIIKMCISMMQRLITNQAIDQKGARYITDTLWMLMESGTE--EVKILQSCTLLLTTNSVVHGEILAKNLVLCFR- 149 (435)
Q Consensus 73 ~sk~~kl~~~AL~~lqKLi~~~~i~~~~~~~iv~~l~~~~e~~~e--qLkILQ~Ll~lvts~~~lhg~~L~~av~~C~~- 149 (435)
.-+++-++..|+..+..+-..+--.-+.....+..++..+..-+| |+.||++|.... .-.++....++.....
T Consensus 189 ~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~----P~~~~e~~~il~~l~~~ 264 (746)
T PTZ00429 189 NDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQR----PSDKESAETLLTRVLPR 264 (746)
T ss_pred cCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC----CCCcHHHHHHHHHHHHH
Confidence 456677777777777666543310000112233333333333345 999988884311 1122333444444444
Q ss_pred hcccCChHHHhhHHH
Q psy10883 150 LHFAKDSTTINTAGA 164 (435)
Q Consensus 150 l~~Sks~~v~~tA~A 164 (435)
++.+.+.++-.+++.
T Consensus 265 Lq~~N~AVVl~Aik~ 279 (746)
T PTZ00429 265 MSHQNPAVVMGAIKV 279 (746)
T ss_pred hcCCCHHHHHHHHHH
Confidence 333333455555554
No 12
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=64.38 E-value=2e+02 Score=30.45 Aligned_cols=126 Identities=21% Similarity=0.182 Sum_probs=67.1
Q ss_pred hhHhHHHHHHHHHHcCCccccCChhHHHHHHHHHHHHHHHhcCccccccccccCCCCCCCCCCCCCCCchHHHHHHHHHH
Q psy10883 243 TRTFGLELLESILINYPSVFYKHPEFSFLLKERVCALVIKLFSPNIKYRNNALSSSGSSQQNAPLDKPYFPISVRLLRVV 322 (435)
Q Consensus 243 sk~lsLeLIesiL~~~~~~F~~~~~l~~llk~~Lcp~Llr~~s~n~~~~n~s~~~~ss~~~~~~~~~~~F~l~~r~~ri~ 322 (435)
+....+|.+..++.- ...++ +.+.+++.|.+.++ + +...+-.-.++.+
T Consensus 244 ~~~V~~e~~~~i~~l-----~~~~~----~~~~~~~~L~~lL~--------s---------------~~~nvr~~~L~~L 291 (526)
T PF01602_consen 244 SPSVVYEAIRLIIKL-----SPSPE----LLQKAINPLIKLLS--------S---------------SDPNVRYIALDSL 291 (526)
T ss_dssp HHHHHHHHHHHHHHH-----SSSHH----HHHHHHHHHHHHHT--------S---------------SSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHh-----hcchH----HHHhhHHHHHHHhh--------c---------------ccchhehhHHHHH
Confidence 455566667666621 12222 56667777777762 1 1111211234455
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcCh--HHHHHHHHhcCCCCCCchHHHHHHHHHHH
Q psy10883 323 SILVQKYHVLLVTECEIFLSLIIKFLDPDKPVWQRSLALEVLHKLCVQT--ELLKAFCQSYDLKDHTTHIFQDIVNSLAT 400 (435)
Q Consensus 323 ~~Ll~~~~~~Lk~EiEvfls~l~~~Le~~~~~wqk~l~LEvl~~ic~dp--~~l~~iy~nYDcd~~~~nIfe~lv~~Lsk 400 (435)
..+..++...+. .....+..+..+.+..=|..+|+++..++... +.+++-+..|=-+.....+-++++..+++
T Consensus 292 ~~l~~~~~~~v~-----~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~ 366 (526)
T PF01602_consen 292 SQLAQSNPPAVF-----NQSLILFFLLYDDDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGD 366 (526)
T ss_dssp HHHCCHCHHHHG-----THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHH
T ss_pred HHhhcccchhhh-----hhhhhhheecCCCChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHH
Confidence 555555522222 12233445665667788999999999998654 33333344441122234477788888888
Q ss_pred HHhhh
Q psy10883 401 YVHSV 405 (435)
Q Consensus 401 ~~q~~ 405 (435)
++...
T Consensus 367 la~~~ 371 (526)
T PF01602_consen 367 LAEKF 371 (526)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 77765
No 13
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=58.17 E-value=4.9e+02 Score=33.00 Aligned_cols=272 Identities=12% Similarity=0.093 Sum_probs=138.3
Q ss_pred hHHHHHHHHHhc-CCChhHHHHHHHHHHHHHccCcCC-ccchHHHHHHHHHHhcCChhh--HHHHHHHHHHHhcC-Cccc
Q psy10883 62 NQILYPVVQGCE-TKDQKIIKMCISMMQRLITNQAID-QKGARYITDTLWMLMESGTEE--VKILQSCTLLLTTN-SVVH 136 (435)
Q Consensus 62 ~~~l~Pf~lac~-sk~~kl~~~AL~~lqKLi~~~~i~-~~~~~~iv~~l~~~~e~~~eq--LkILQ~Ll~lvts~-~~lh 136 (435)
.++++||..... +.+..+-...+.|+..++....=. .++-+.|...+...+.+..+. -.--+++-.++... ..+.
T Consensus 1181 kefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~ 1260 (1780)
T PLN03076 1181 NEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYIT 1260 (1780)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhcc
Confidence 589999998775 567899999999999998765411 235567777766555433321 11123333444442 2232
Q ss_pred ---chHHHHHHHHHhhhcccC-ChHHHhhHHHHHHHHHHHHHhccccc-ccccccCCCCCCCCcccccCCCCCCCCCCCC
Q psy10883 137 ---GEILAKNLVLCFRLHFAK-DSTTINTAGATVRHLVSHVFERVLLE-DDQFREEDHKPRNINYEELKTPSNIPPKGIR 211 (435)
Q Consensus 137 ---g~~L~~av~~C~~l~~Sk-s~~v~~tA~ATL~Qiv~~VF~Rv~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (435)
.+.+..+|.+-..+-.++ +.-++=+|-..|+-+...+-+.-... ......+.. +..+................+
T Consensus 1261 ~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~ 1339 (1780)
T PLN03076 1261 ETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAP-PSSPQSGKDGKQESGEFTDKD 1339 (1780)
T ss_pred ccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccc-cccccccccccccccccccch
Confidence 577777776555566444 34444455555555544432210000 000000000 000000000000000000001
Q ss_pred cchhhHHHHHHHHHHHhCCCCcchhhcccchhhHhHHHHHHHHHHcCCccccCChhHHHHH-HHHHHHHHHHhcCccccc
Q psy10883 212 PCAGDAYLMFQDLVQLVNTDQPYWLIGMTEMTRTFGLELLESILINYPSVFYKHPEFSFLL-KERVCALVIKLFSPNIKY 290 (435)
Q Consensus 212 ~~~~DA~lvF~dLC~Ls~~~~~~~l~~~~~~sk~lsLeLIesiL~~~~~~F~~~~~l~~ll-k~~Lcp~Llr~~s~n~~~ 290 (435)
....==|-++..|-.++..+.++ -|.-||+.+-.+|..||..|.. ++.+.+ ++-|.|.+-. ++.-+.-
T Consensus 1340 ~~~~lW~pLL~~Ls~l~~D~RlE--------VR~~ALqtLF~iL~~yG~~Fs~--~~W~~if~~VLFPIFd~-l~~~~~~ 1408 (1780)
T PLN03076 1340 DHLYFWFPLLAGLSELSFDPRPE--------IRKSALQVLFDTLRNHGHLFSL--PLWERVFESVLFPIFDY-VRHAIDP 1408 (1780)
T ss_pred hHHHHHHHHHHHHHHHhcCCcHH--------HHHHHHHHHHHHHHHhhccCCH--HHHHHHHHHHHHHHHHH-HHHhhcc
Confidence 11111256666666666654432 4566999999999999999953 666555 4556676532 1100000
Q ss_pred cccccCCCCCCC----CCCCCCCCc--hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q psy10883 291 RNNALSSSGSSQ----QNAPLDKPY--FPISVRLLRVVSILVQKYHVLLVTECEIFLSLIIKFL 348 (435)
Q Consensus 291 ~n~s~~~~ss~~----~~~~~~~~~--F~l~~r~~ri~~~Ll~~~~~~Lk~EiEvfls~l~~~L 348 (435)
.+.. ..+.. .+.+.+... ...+..+++-+..|+.+|.+.|..-+.-||.++...+
T Consensus 1409 ~~~~---~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci 1469 (1780)
T PLN03076 1409 SGGD---EPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFI 1469 (1780)
T ss_pred cccc---ccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00000 000001111 2455568899999999999999888888887776555
No 14
>KOG3036|consensus
Probab=56.81 E-value=46 Score=33.00 Aligned_cols=83 Identities=22% Similarity=0.314 Sum_probs=54.4
Q ss_pred CchHHHHH--HHHHHHHHHHHHHHhHHHHHHHHH------HHHHHhhCCCCChHHHHHHHHHHHHhhcChHHHHHHHHhc
Q psy10883 310 PYFPISVR--LLRVVSILVQKYHVLLVTECEIFL------SLIIKFLDPDKPVWQRSLALEVLHKLCVQTELLKAFCQSY 381 (435)
Q Consensus 310 ~~F~l~~r--~~ri~~~Ll~~~~~~Lk~EiEvfl------s~l~~~Le~~~~~wqk~l~LEvl~~ic~dp~~l~~iy~nY 381 (435)
..|+- +| ++.++..|++.=-. |+--|| ...+++.|.++ .--|-++.-++.+|..|..-|.-++.+|
T Consensus 136 r~fEy-LRLtsLGVIgaLvk~dd~----eVi~fLl~TeIVPlCLrime~GS-elSKtvA~fIlqKIlldD~GL~YiCqt~ 209 (293)
T KOG3036|consen 136 RPFEY-LRLTSLGVIGALVKNDDQ----EVIRFLLTTEIVPLCLRIMESGS-ELSKTVATFILQKILLDDVGLYYICQTA 209 (293)
T ss_pred CchHH-HhHHHHHHHHHHHhcCcH----HHHHHHHHhhhHHHHHHHHhccc-HHHHHHHHHHHHHHhhccccHHHHHHhH
Confidence 45773 34 77888888775221 222233 34456777764 5667888899999999999999999999
Q ss_pred CCCCCCchHHHHHHHHH
Q psy10883 382 DLKDHTTHIFQDIVNSL 398 (435)
Q Consensus 382 Dcd~~~~nIfe~lv~~L 398 (435)
|=-..-..++.+|+..|
T Consensus 210 eRF~av~~~L~kmv~~l 226 (293)
T KOG3036|consen 210 ERFSAVALVLGKMVFQL 226 (293)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 85333344444444433
No 15
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=55.29 E-value=27 Score=32.86 Aligned_cols=34 Identities=21% Similarity=0.476 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHhcCCChhHHHHHHHHHHHHHccC
Q psy10883 61 VNQILYPVVQGCETKDQKIIKMCISMMQRLITNQ 94 (435)
Q Consensus 61 ~~~~l~Pf~lac~sk~~kl~~~AL~~lqKLi~~~ 94 (435)
-..++.|+.-|..|+++.+...+|.+||+|+..+
T Consensus 78 lPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~ 111 (183)
T PF10274_consen 78 LPQLIIPLKRALNTRDPEVFCATLKALQQLVTSS 111 (183)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 4689999999999999999999999999996554
No 16
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=53.42 E-value=70 Score=29.70 Aligned_cols=85 Identities=14% Similarity=0.283 Sum_probs=59.5
Q ss_pred hhHHHHHHHHHhcCCChhHHHHHHHHHHHHHccCcCCccc-hHHHHHHHHHHhcCChh---hHHHHHHHHHHHhcC-Ccc
Q psy10883 61 VNQILYPVVQGCETKDQKIIKMCISMMQRLITNQAIDQKG-ARYITDTLWMLMESGTE---EVKILQSCTLLLTTN-SVV 135 (435)
Q Consensus 61 ~~~~l~Pf~lac~sk~~kl~~~AL~~lqKLi~~~~i~~~~-~~~iv~~l~~~~e~~~e---qLkILQ~Ll~lvts~-~~l 135 (435)
.+.|+..++-.|-+.++++-..|++.++-.+.+|++.|.. ++.++. +++..+ .=+-.+.+..+...+ ..+
T Consensus 6 ~Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIA-----L~ts~~~~ir~~A~~~l~~l~eK~~s~v 80 (187)
T PF12830_consen 6 VQRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIA-----LETSPNPSIRSRAYQLLKELHEKHESLV 80 (187)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhh-----hhCCCChHHHHHHHHHHHHHHHHhHHHH
Confidence 4689999999999999999999999999999999998765 344433 232221 333445555555554 334
Q ss_pred cchHHHHHHHHHhhhc
Q psy10883 136 HGEILAKNLVLCFRLH 151 (435)
Q Consensus 136 hg~~L~~av~~C~~l~ 151 (435)
+. ...+.++.+|.++
T Consensus 81 ~~-~~~~gi~~af~~~ 95 (187)
T PF12830_consen 81 ES-RYSEGIRLAFDYQ 95 (187)
T ss_pred HH-HHHHHHHHHHHHH
Confidence 43 4566788888766
No 17
>KOG1062|consensus
Probab=52.80 E-value=77 Score=36.13 Aligned_cols=135 Identities=15% Similarity=0.217 Sum_probs=85.6
Q ss_pred cChhH-HHHHHHHHHHhhcCCCCCCccchhchhHHHHHHHHHhcCCChhHHHHHHHHHHHHHccCc--CC--ccchHHHH
Q psy10883 31 KFPQI-KEACEEGILKLRNVSSNPQSQMHMVVNQILYPVVQGCETKDQKIIKMCISMMQRLITNQA--ID--QKGARYIT 105 (435)
Q Consensus 31 K~~~l-k~a~e~al~~Lk~~~~~~~~~l~~~~~~~l~Pf~lac~sk~~kl~~~AL~~lqKLi~~~~--i~--~~~~~~iv 105 (435)
++|-+ |+|+-.|...++..++ -.+.|+.+|.-....|++-+...++.-+..++.-+- ++ .+..+..|
T Consensus 154 ~~~~irKKA~Lca~r~irK~P~--------l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV 225 (866)
T KOG1062|consen 154 RDPYIRKKAALCAVRFIRKVPD--------LVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLV 225 (866)
T ss_pred CCHHHHHHHHHHHHHHHHcCch--------HHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 33444 4566677777777664 357889999999999999999899988888887632 11 11345556
Q ss_pred HHHHHHhcCC----------hh---hHHHHHHHHHHHhcCCcccchHHHHHHHHHhhhcccCChHHHhhHHHHHHHHHHH
Q psy10883 106 DTLWMLMESG----------TE---EVKILQSCTLLLTTNSVVHGEILAKNLVLCFRLHFAKDSTTINTAGATVRHLVSH 172 (435)
Q Consensus 106 ~~l~~~~e~~----------~e---qLkILQ~Ll~lvts~~~lhg~~L~~av~~C~~l~~Sks~~v~~tA~ATL~Qiv~~ 172 (435)
..|......+ .| |.|||+.|-.+-+...... |....++.... .+...+.|.-.|-|-+.|.+
T Consensus 226 ~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daS-d~M~DiLaqva----tntdsskN~GnAILYE~V~T 300 (866)
T KOG1062|consen 226 KILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADAS-DLMNDILAQVA----TNTDSSKNAGNAILYECVRT 300 (866)
T ss_pred HHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHH-HHHHHHHHHHH----hcccccccchhHHHHHHHHH
Confidence 6665554321 13 9999999988888732221 12222222222 23344556677888888888
Q ss_pred HHhccc
Q psy10883 173 VFERVL 178 (435)
Q Consensus 173 VF~Rv~ 178 (435)
||+=-.
T Consensus 301 I~~I~~ 306 (866)
T KOG1062|consen 301 IMDIRS 306 (866)
T ss_pred HHhccC
Confidence 887443
No 18
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=48.42 E-value=73 Score=25.69 Aligned_cols=108 Identities=14% Similarity=0.004 Sum_probs=55.0
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHccC-cCCccchH-HHHHHHHHHhcCChh--hHHHHHHHHHHHhcCCcccch
Q psy10883 63 QILYPVVQGCETKDQKIIKMCISMMQRLITNQ-AIDQKGAR-YITDTLWMLMESGTE--EVKILQSCTLLLTTNSVVHGE 138 (435)
Q Consensus 63 ~~l~Pf~lac~sk~~kl~~~AL~~lqKLi~~~-~i~~~~~~-~iv~~l~~~~e~~~e--qLkILQ~Ll~lvts~~~lhg~ 138 (435)
.++.++.--+...++++...|+.+|..+.... -....... .+++.+..++..+.. +...+.+|-.+..........
T Consensus 7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 86 (120)
T cd00020 7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI 86 (120)
T ss_pred CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence 45666777777888999999999999988763 11001111 333444444443322 555555555554432110000
Q ss_pred HHH-HHHHHHhhhcccCChHHHhhHHHHHHHHH
Q psy10883 139 ILA-KNLVLCFRLHFAKDSTTINTAGATVRHLV 170 (435)
Q Consensus 139 ~L~-~av~~C~~l~~Sks~~v~~tA~ATL~Qiv 170 (435)
... .++....++....+..++..|..+|.++.
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 000 02222223223335566677777777653
No 19
>PTZ00429 beta-adaptin; Provisional
Probab=47.83 E-value=4.8e+02 Score=29.89 Aligned_cols=78 Identities=21% Similarity=0.306 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcCh---HHHHHHHHhcCCCCCCchHHHHH
Q psy10883 318 LLRVVSILVQKYHVLLVTECEIFLSLIIKFLDPDKPVWQRSLALEVLHKLCVQT---ELLKAFCQSYDLKDHTTHIFQDI 394 (435)
Q Consensus 318 ~~ri~~~Ll~~~~~~Lk~EiEvfls~l~~~Le~~~~~wqk~l~LEvl~~ic~dp---~~l~~iy~nYDcd~~~~nIfe~l 394 (435)
++|-+..++.++...+..++++|+-. - +-|..-|...||+|-+++.+. +.+.|+.. |=.+. ...+-.+.
T Consensus 317 aLr~I~~i~~~~P~lf~~~~~~Ff~~-----~-~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~e-Ya~d~-D~ef~r~a 388 (746)
T PTZ00429 317 VCKNIHALLVIFPNLLRTNLDSFYVR-----Y-SDPPFVKLEKLRLLLKLVTPSVAPEILKELAE-YASGV-DMVFVVEV 388 (746)
T ss_pred HHHHHHHHHHHCHHHHHHHHHhhhcc-----c-CCcHHHHHHHHHHHHHHcCcccHHHHHHHHHH-HhhcC-CHHHHHHH
Confidence 35566788888888888877777632 1 225567999999999998765 45556553 33222 23577778
Q ss_pred HHHHHHHHh
Q psy10883 395 VNSLATYVH 403 (435)
Q Consensus 395 v~~Lsk~~q 403 (435)
+.++++++.
T Consensus 389 IrAIg~lA~ 397 (746)
T PTZ00429 389 VRAIASLAI 397 (746)
T ss_pred HHHHHHHHH
Confidence 888887774
No 20
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=47.04 E-value=46 Score=27.07 Aligned_cols=55 Identities=9% Similarity=0.148 Sum_probs=41.6
Q ss_pred hHHHHHHHHH-hcCCChhHHHHHHHHHHHHHccCcC-CccchHHHHHHHHHHhcCCh
Q psy10883 62 NQILYPVVQG-CETKDQKIIKMCISMMQRLITNQAI-DQKGARYITDTLWMLMESGT 116 (435)
Q Consensus 62 ~~~l~Pf~la-c~sk~~kl~~~AL~~lqKLi~~~~i-~~~~~~~iv~~l~~~~e~~~ 116 (435)
.++++||... ..+.+..+-..-|+||..++....= =.++-+.|++.+......+.
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~ 72 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDND 72 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCC
Confidence 6999999998 4667899999999999999886541 14456677777766655433
No 21
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=46.10 E-value=1.2e+02 Score=23.31 Aligned_cols=65 Identities=11% Similarity=0.211 Sum_probs=45.4
Q ss_pred hccChhHHHHHHHHHHHhhcCCCCCCccchhchhHHHHHHHHHhcCCChhHHHHHHHHHHHHHccCcCCccchHHHHHHH
Q psy10883 29 KKKFPQIKEACEEGILKLRNVSSNPQSQMHMVVNQILYPVVQGCETKDQKIIKMCISMMQRLITNQAIDQKGARYITDTL 108 (435)
Q Consensus 29 krK~~~lk~a~e~al~~Lk~~~~~~~~~l~~~~~~~l~Pf~lac~sk~~kl~~~AL~~lqKLi~~~~i~~~~~~~iv~~l 108 (435)
+-+++.+|..+=.++.. .. ....+.++.-.+++.++.+-..|+..|.++ +-+..++.+
T Consensus 10 ~~~~~~vr~~a~~~L~~---~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i---------~~~~~~~~L 67 (88)
T PF13646_consen 10 NDPDPQVRAEAARALGE---LG----------DPEAIPALIELLKDEDPMVRRAAARALGRI---------GDPEAIPAL 67 (88)
T ss_dssp TSSSHHHHHHHHHHHHC---CT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC---------HHHHTHHHH
T ss_pred cCCCHHHHHHHHHHHHH---cC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh---------CCHHHHHHH
Confidence 46788899876555552 21 236778888888999999999999999987 235556666
Q ss_pred HHHhcCC
Q psy10883 109 WMLMESG 115 (435)
Q Consensus 109 ~~~~e~~ 115 (435)
...+..+
T Consensus 68 ~~~l~~~ 74 (88)
T PF13646_consen 68 IKLLQDD 74 (88)
T ss_dssp HHHHTC-
T ss_pred HHHHcCC
Confidence 6655443
No 22
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=43.63 E-value=1.7e+02 Score=28.78 Aligned_cols=113 Identities=12% Similarity=0.193 Sum_probs=67.1
Q ss_pred CChhHHHHHHHHHHHHHHHhcCccccccccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHH--HHHHHHhHHHHHHHHH
Q psy10883 264 KHPEFSFLLKERVCALVIKLFSPNIKYRNNALSSSGSSQQNAPLDKPYFPISVRLLRVVSIL--VQKYHVLLVTECEIFL 341 (435)
Q Consensus 264 ~~~~l~~llk~~Lcp~Llr~~s~n~~~~n~s~~~~ss~~~~~~~~~~~F~l~~r~~ri~~~L--l~~~~~~Lk~EiEvfl 341 (435)
...+....+|.|++..+-...+.. ..-++-+-.+|++..| ...|+..+..- +
T Consensus 83 ~~~en~~~Ik~~i~~Vc~~~~s~~----------------------lns~~Q~agLrlL~nLtv~~~~~~~l~~~----i 136 (254)
T PF04826_consen 83 VNDENQEQIKMYIPQVCEETVSSP----------------------LNSEVQLAGLRLLTNLTVTNDYHHMLANY----I 136 (254)
T ss_pred CChhhHHHHHHHHHHHHHHHhcCC----------------------CCCHHHHHHHHHHHccCCCcchhhhHHhh----H
Confidence 345667778888776666554311 1122223345555544 23466665553 3
Q ss_pred HHHHHhhCCCCChHHHHHHHHHHHHhhcChHHHHHHHHh---------cCCCCCCchHHHHHHHHHHHHHhh
Q psy10883 342 SLIIKFLDPDKPVWQRSLALEVLHKLCVQTELLKAFCQS---------YDLKDHTTHIFQDIVNSLATYVHS 404 (435)
Q Consensus 342 s~l~~~Le~~~~~wqk~l~LEvl~~ic~dp~~l~~iy~n---------YDcd~~~~nIfe~lv~~Lsk~~q~ 404 (435)
+-+++.|.+++. --|..+|.+|-.+..+|.+.+++... ||.+. .+++..+++.....+...
T Consensus 137 ~~ll~LL~~G~~-~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~-~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 137 PDLLSLLSSGSE-KTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSSE-SKENLLRVLTFFENINEN 206 (254)
T ss_pred HHHHHHHHcCCh-HHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHccCC-ccHHHHHHHHHHHHHHHh
Confidence 444566766654 45589999999999999887777644 55433 455556666666655433
No 23
>COG5657 CSE1 CAS/CSE protein involved in chromosome segregation [Cell division and chromosome partitioning]
Probab=35.81 E-value=1.3e+02 Score=34.73 Aligned_cols=120 Identities=18% Similarity=0.237 Sum_probs=66.5
Q ss_pred HHHHHHHHHhCCCCcchhhcccchhhHhHHHHHHHHHHcCCccccCChhHHHHHH---HHHHHHHHHhcCcccccccccc
Q psy10883 219 LMFQDLVQLVNTDQPYWLIGMTEMTRTFGLELLESILINYPSVFYKHPEFSFLLK---ERVCALVIKLFSPNIKYRNNAL 295 (435)
Q Consensus 219 lvF~dLC~Ls~~~~~~~l~~~~~~sk~lsLeLIesiL~~~~~~F~~~~~l~~llk---~~Lcp~Llr~~s~n~~~~n~s~ 295 (435)
.+|.|||.+.+.+. + ..-.=+|--++.|++..++.|+..+-|..... .-+||.+.+....+--..|..
T Consensus 123 TL~~DL~~~Ls~~D---~-----~tn~~~L~~~h~Ifk~~r~l~Rsd~lf~ei~p~L~~~l~pfl~~~~~~~s~~~~~~- 193 (947)
T COG5657 123 TLVPDLLSLLSEKD---M-----VTNENSLRVLHHIFKRLRRLFRSDALFLEIAPVLLSILCPFLFSSAYFWSMSENLD- 193 (947)
T ss_pred hHHHHHHhhhcccc---h-----HHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHhccchhHHhhcch-
Confidence 47889997654421 1 12233566778888889999998877665443 346788777543110000000
Q ss_pred CCCCCCCCCCCCCCCchHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHhhCCCCChHHH
Q psy10883 296 SSSGSSQQNAPLDKPYFPISVRLLRVVSILVQ-KYHVLLVTECEIFLSLIIKFLDPDKPVWQR 357 (435)
Q Consensus 296 ~~~ss~~~~~~~~~~~F~l~~r~~ri~~~Ll~-~~~~~Lk~EiEvfls~l~~~Le~~~~~wqk 357 (435)
.+ ....|.+++..+|.+.-+-- +-+..+..=+..|++++.+.++-..|.-|+
T Consensus 194 ---~~-------llslfqv~L~~~r~~~~~~~qdi~eFfEd~l~~~m~~F~klls~~~~~lq~ 246 (947)
T COG5657 194 ---ES-------LLSLFQVCLKLIRRYYDLGFQDIPEFFEDNLDKFMEHFCKLLSYSNPVLQK 246 (947)
T ss_pred ---hh-------HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhcchhhhh
Confidence 00 23456666666665554422 133444555556666666666655565555
No 24
>KOG4524|consensus
Probab=35.78 E-value=2.1e+02 Score=33.55 Aligned_cols=158 Identities=15% Similarity=0.076 Sum_probs=91.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHhhcCCCCCCccchhchhHHHHHHHHHhcCCChhHHHHHHHH
Q psy10883 7 PELSLKFLDSLQNDLKNLSIETKKKFPQIKEACEEGILKLRNVSSNPQSQMHMVVNQILYPVVQGCETKDQKIIKMCISM 86 (435)
Q Consensus 7 ~~~~~~~~~~L~~dL~~L~~e~krK~~~lk~a~e~al~~Lk~~~~~~~~~l~~~~~~~l~Pf~lac~sk~~kl~~~AL~~ 86 (435)
|.-+.-..+.|...-+-|+.|..+-.-..=+-..-++..|+..+. .+.+-.+..-.|++-....++|=++.-|+.|
T Consensus 795 ~~qv~iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n----~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~ 870 (1014)
T KOG4524|consen 795 PDQVKIVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHN----LLLPLVHQTWPSVIECLLCKDPLIVQRAFSC 870 (1014)
T ss_pred ChHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccch----hHhHHHHhhhhHHHHHHhcCchHHHHHHHHH
Confidence 345555666777777777777655333333333344444444432 2223446667778888899999999999999
Q ss_pred HHHHHccC--cCCccchHHHHHHHHH-Hhc------------CChh---hHHHHHHHHHHHhcCCcccchHHHHHHHHHh
Q psy10883 87 MQRLITNQ--AIDQKGARYITDTLWM-LME------------SGTE---EVKILQSCTLLLTTNSVVHGEILAKNLVLCF 148 (435)
Q Consensus 87 lqKLi~~~--~i~~~~~~~iv~~l~~-~~e------------~~~e---qLkILQ~Ll~lvts~~~lhg~~L~~av~~C~ 148 (435)
|.-+..|. ++.......++=.+.. |.+ .+.+ |+|+++.++.++-- ..+.|..+-.+...|+
T Consensus 871 i~~m~~~sgDFv~sR~l~dvlP~l~~~~~~~~~~~~~~~~~~qta~yKlq~k~i~~~~~~v~~-l~l~~~~l~~v~e~~~ 949 (1014)
T KOG4524|consen 871 IEQMGKYSGDFVASRFLEDVLPWLKHLCQDSFARTILKELRIQTAEYKLQLKSISKLVKFVPY-LELAGVSLHMVAEGVK 949 (1014)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcCCCccee-eecccccHHHHhhhhh
Confidence 99998873 5555545554433332 211 1123 78888777766543 2345555666666666
Q ss_pred h-hcccCChHHHhhHHHHHHHH
Q psy10883 149 R-LHFAKDSTTINTAGATVRHL 169 (435)
Q Consensus 149 ~-l~~Sks~~v~~tA~ATL~Qi 169 (435)
- ++.--....|+.|.+.+.|.
T Consensus 950 I~l~~~~~q~Lqe~~~s~F~~~ 971 (1014)
T KOG4524|consen 950 IYLSLIQPQVLQEIARSCFLDL 971 (1014)
T ss_pred hhHHhcChHHHHHHHHHHHHHH
Confidence 4 33222334566666555533
No 25
>COG5117 NOC3 Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis / Intracellular trafficking and secretion]
Probab=35.63 E-value=6.1e+02 Score=27.54 Aligned_cols=133 Identities=15% Similarity=0.167 Sum_probs=78.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhccChhHHHH--HHHHHHHhhcCCCCCCccchhchhHHHHHHHHHhcCCChhHHHHHH
Q psy10883 7 PELSLKFLDSLQNDLKNLSIETKKKFPQIKEA--CEEGILKLRNVSSNPQSQMHMVVNQILYPVVQGCETKDQKIIKMCI 84 (435)
Q Consensus 7 ~~~~~~~~~~L~~dL~~L~~e~krK~~~lk~a--~e~al~~Lk~~~~~~~~~l~~~~~~~l~Pf~lac~sk~~kl~~~AL 84 (435)
|++-++=.-.|..-++++-.|.+|=..+.|+| ++.|++.-|+..+ .-.-+|+-..+..+-+.-.++.-+|
T Consensus 357 ~k~~KKd~~hlsKK~RK~~KE~~~I~~Emr~ae~i~~a~e~eknqse--------Ilkiif~~Yf~vLk~~~k~lig~vl 428 (657)
T COG5117 357 SKREKKDIFHLSKKLRKIEKERLRIQSEMRDAEDIEEAIEEEKNQSE--------ILKIIFRLYFMVLKGDRKDLIGYVL 428 (657)
T ss_pred hhhhhcchhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhHHH--------HHHHHHHHHHHHHhcchHHHHHHHH
Confidence 33334434446777777777777766777764 4455555444322 2245566666666655555999999
Q ss_pred HHHHHHHccCcCCccchHHHHHHHHHHhcCC-hh---hHHHHHHHHHHHhc----CCccc---chHHHHHHHHHhh
Q psy10883 85 SMMQRLITNQAIDQKGARYITDTLWMLMESG-TE---EVKILQSCTLLLTT----NSVVH---GEILAKNLVLCFR 149 (435)
Q Consensus 85 ~~lqKLi~~~~i~~~~~~~iv~~l~~~~e~~-~e---qLkILQ~Ll~lvts----~~~lh---g~~L~~av~~C~~ 149 (435)
..+-|+ ...+..+-+...++.+..++..+ -+ ---.-|+|+.+++. +.... +=.|...|...|.
T Consensus 429 eGl~k~--~~~~n~eflGD~Levl~eL~~d~~~dk~ss~a~r~alLcI~tAF~i~S~t~ygk~n~Dl~~fVd~lY~ 502 (657)
T COG5117 429 EGLVKY--RKIINPEFLGDLLEVLYELLNDNPLDKISSDARRQALLCILTAFEIASATLYGKENYDLGGFVDLLYS 502 (657)
T ss_pred HHHHHH--HhhcCHHHHhHHHHHHHHHHcCCchhhhhHHHHHHHHHHhhHHHHHhhhhhhhhccccHHHHHHHHHH
Confidence 888776 23455666778888887776543 12 12244777777654 11111 2245567888887
No 26
>KOG1319|consensus
Probab=32.58 E-value=3.3e+02 Score=25.85 Aligned_cols=53 Identities=9% Similarity=0.083 Sum_probs=40.7
Q ss_pred hHHHHHHHH-HHHhcC-CcccchHHHHHHHHHhhhc--ccCChHHHhhHHHHHHHHH
Q psy10883 118 EVKILQSCT-LLLTTN-SVVHGEILAKNLVLCFRLH--FAKDSTTINTAGATVRHLV 170 (435)
Q Consensus 118 qLkILQ~Ll-~lvts~-~~lhg~~L~~av~~C~~l~--~Sks~~v~~tA~ATL~Qiv 170 (435)
|.+++|.++ .++++. ..|.=++...+-++.+.-. ..|+....+.-..+|.||-
T Consensus 168 kf~vfQ~imd~~F~sF~~~i~~~~f~~lT~~i~sWvEehckp~~lr~i~~g~l~qMp 224 (229)
T KOG1319|consen 168 KFNVFQGIMDSLFQSFNASISVASFQELTACVFSWIEEHCKPQTLREIVIGVLHQMP 224 (229)
T ss_pred HHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHcc
Confidence 789999987 566763 5577777888888888743 3588888888889999883
No 27
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=32.52 E-value=5.8e+02 Score=26.33 Aligned_cols=94 Identities=16% Similarity=0.294 Sum_probs=64.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhhCCCCChHHHHHHHHHHHHhhcCh--HHHHHHHHhcCCCCCC
Q psy10883 311 YFPISVRLLRVVSILVQKYHVLLVTECEIFLSLII-KFLDPDKPVWQRSLALEVLHKLCVQT--ELLKAFCQSYDLKDHT 387 (435)
Q Consensus 311 ~F~l~~r~~ri~~~Ll~~~~~~Lk~EiEvfls~l~-~~Le~~~~~wqk~l~LEvl~~ic~dp--~~l~~iy~nYDcd~~~ 387 (435)
+..+..+-+.++..|+.+|...+...++.-+..++ .++.+.++...|+..|...-..+-+| ..-..+...+|.....
T Consensus 147 s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~ 226 (372)
T PF12231_consen 147 SKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLEN 226 (372)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhcccccc
Confidence 34566677889999999999999999999998766 66788888888888877666666555 3344444444444443
Q ss_pred chHHHHHHHHHHHHHhh
Q psy10883 388 THIFQDIVNSLATYVHS 404 (435)
Q Consensus 388 ~nIfe~lv~~Lsk~~q~ 404 (435)
..+.+.+.+-|.+++..
T Consensus 227 ~~~~~~~~~~L~~mi~~ 243 (372)
T PF12231_consen 227 GKLIQLYCERLKEMIKS 243 (372)
T ss_pred ccHHHHHHHHHHHHHhC
Confidence 35555555555554443
No 28
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=29.76 E-value=5.6e+02 Score=25.33 Aligned_cols=106 Identities=13% Similarity=0.177 Sum_probs=63.0
Q ss_pred HHHHHHHHH-HhccChhHHHHHHHHHHHhhcCCCCCCccchhchhHHHHHHHHHhcCCChhHHHHHHHHHHHHHcc-Cc-
Q psy10883 19 NDLKNLSIE-TKKKFPQIKEACEEGILKLRNVSSNPQSQMHMVVNQILYPVVQGCETKDQKIIKMCISMMQRLITN-QA- 95 (435)
Q Consensus 19 ~dL~~L~~e-~krK~~~lk~a~e~al~~Lk~~~~~~~~~l~~~~~~~l~Pf~lac~sk~~kl~~~AL~~lqKLi~~-~~- 95 (435)
+=+++|... .+..++++|+.+=+.+...--... ..+.+++.-|..+.+.....+..+|+.+|--++.. |.
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~-------~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~ 98 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK-------ELAKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGID 98 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh-------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCch
Confidence 445556654 355778888877666655444332 13567888888888777899999999999887654 32
Q ss_pred -CCccc-------hHHHHHHHHHHhcCCh-h-hHHHHHHHHHHHhc
Q psy10883 96 -IDQKG-------ARYITDTLWMLMESGT-E-EVKILQSCTLLLTT 131 (435)
Q Consensus 96 -i~~~~-------~~~iv~~l~~~~e~~~-e-qLkILQ~Ll~lvts 131 (435)
++... ...+++.+.+.++... + |....+.+.-++-+
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 99 IFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred hccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 32222 2455666655544332 2 44444444433333
No 29
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=29.44 E-value=7.1e+02 Score=26.47 Aligned_cols=53 Identities=17% Similarity=0.243 Sum_probs=42.5
Q ss_pred hHHHH-HHHHHhcCCChhHHHHHHHHHHHHHccCcCCccchHHHHHHHHHHhcC
Q psy10883 62 NQILY-PVVQGCETKDQKIIKMCISMMQRLITNQAIDQKGARYITDTLWMLMES 114 (435)
Q Consensus 62 ~~~l~-Pf~lac~sk~~kl~~~AL~~lqKLi~~~~i~~~~~~~iv~~l~~~~e~ 114 (435)
..++. -+.++-.|.++..+..+|..+.-+|.||.+|.+.+..+|.+||.....
T Consensus 175 ~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~ 228 (464)
T PF11864_consen 175 SSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNS 228 (464)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhcc
Confidence 34443 334433677888889999999999999999999999999999988654
No 30
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=27.85 E-value=3.5e+02 Score=22.42 Aligned_cols=60 Identities=20% Similarity=0.184 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHHh-hC--CCCChHHHHHHHHHHHHhhcChHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHh
Q psy10883 332 LLVTECEIFLSLIIKF-LD--PDKPVWQRSLALEVLHKLCVQTELLKAFCQSYDLKDHTTHIFQDIVNSLATYVH 403 (435)
Q Consensus 332 ~Lk~EiEvfls~l~~~-Le--~~~~~wqk~l~LEvl~~ic~dp~~l~~iy~nYDcd~~~~nIfe~lv~~Lsk~~q 403 (435)
.|...++-++..|+++ |. .|.-.--|+++.|.|..|++..+--.- +-|.++.++|+|.+.
T Consensus 16 ~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l------------~~f~~IF~~L~kl~~ 78 (97)
T PF12755_consen 16 ALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEIL------------PYFNEIFDALCKLSA 78 (97)
T ss_pred HchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHc
Confidence 3455577777766644 43 233345599999999999866543221 126677777777643
No 31
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=27.70 E-value=6e+02 Score=25.01 Aligned_cols=75 Identities=16% Similarity=0.247 Sum_probs=51.0
Q ss_pred CchHHHHH--HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhh---cChHHHHHHHHhcCCC
Q psy10883 310 PYFPISVR--LLRVVSILVQKYHVLLVTECEIFLSLIIKFLDPDKPVWQRSLALEVLHKLC---VQTELLKAFCQSYDLK 384 (435)
Q Consensus 310 ~~F~l~~r--~~ri~~~Ll~~~~~~Lk~EiEvfls~l~~~Le~~~~~wqk~l~LEvl~~ic---~dp~~l~~iy~nYDcd 384 (435)
+.++-..| +++++..|+.+|++.++.--.-|+.-+++..+.++-+.-=.++.++++.+. .-++...++|...-|-
T Consensus 92 q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~lFd~~~cY 171 (262)
T PF14500_consen 92 QSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFAEDLFDVFSCY 171 (262)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHhhhe
Confidence 45666666 889999999999999977777888888899887764444444444444432 2255566666665554
No 32
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=26.39 E-value=3.7e+02 Score=25.48 Aligned_cols=83 Identities=22% Similarity=0.306 Sum_probs=52.8
Q ss_pred HhHHHHHHHHHHcCCccccCChhHHHHHHHHHHHHHHHhcCccccccccccCCCCCCCCCCCCCCCchHHHHHHHHHHHH
Q psy10883 245 TFGLELLESILINYPSVFYKHPEFSFLLKERVCALVIKLFSPNIKYRNNALSSSGSSQQNAPLDKPYFPISVRLLRVVSI 324 (435)
Q Consensus 245 ~lsLeLIesiL~~~~~~F~~~~~l~~llk~~Lcp~Llr~~s~n~~~~n~s~~~~ss~~~~~~~~~~~F~l~~r~~ri~~~ 324 (435)
...|+.+..++..+.-.|.++ --+.+++.+...+++..... . ....-.+..++++++..
T Consensus 6 ~~~l~~l~~ll~~~~~~~sq~------~ie~~l~~~~~~~~~~~~~~--~-------------~~~~~~if~~~~~ll~~ 64 (223)
T PF10441_consen 6 LLILEILKQLLSSKPWLFSQY------NIEQILSILSTLFSSLRNTL--S-------------ADSSPSIFISLCRLLSS 64 (223)
T ss_pred HHHHHHHHHHHhcCchhccch------hHHHHHHHHHHHHccccccc--c-------------cchhHHHHHHHHHHHHH
Confidence 467888888999887777553 23445555555542110000 0 01122344577889999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHhh
Q psy10883 325 LVQKYHVLLVTECEIFLSLIIKFL 348 (435)
Q Consensus 325 Ll~~~~~~Lk~EiEvfls~l~~~L 348 (435)
+++++|..|..=.-.++..+...|
T Consensus 65 il~~hr~~l~~r~hll~~~l~~LL 88 (223)
T PF10441_consen 65 ILRHHRFKLSGRFHLLLSVLQRLL 88 (223)
T ss_pred HHHHhHHHHcCCChHHHHHHHHHH
Confidence 999999999999888887654443
No 33
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=26.30 E-value=1.5e+02 Score=18.91 Aligned_cols=29 Identities=7% Similarity=0.063 Sum_probs=22.2
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHcc
Q psy10883 65 LYPVVQGCETKDQKIIKMCISMMQRLITN 93 (435)
Q Consensus 65 l~Pf~lac~sk~~kl~~~AL~~lqKLi~~ 93 (435)
+..|+-.++..++++=..|..|++++..+
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 44566667888999999999999998653
No 34
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=26.08 E-value=4.9e+02 Score=23.49 Aligned_cols=91 Identities=16% Similarity=0.189 Sum_probs=59.2
Q ss_pred HHHHHHcCCccccCC-hhHHHHHHHHHHHHHHHhcCccccccccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q psy10883 251 LESILINYPSVFYKH-PEFSFLLKERVCALVIKLFSPNIKYRNNALSSSGSSQQNAPLDKPYFPISVRLLRVVSILVQKY 329 (435)
Q Consensus 251 IesiL~~~~~~F~~~-~~l~~llk~~Lcp~Llr~~s~n~~~~n~s~~~~ss~~~~~~~~~~~F~l~~r~~ri~~~Ll~~~ 329 (435)
|-+.|.+|+.+-... ...++.++.++--+|-. + ++ ..-+. -+.++..++..-
T Consensus 4 ll~~l~~~~~~~~~~~~~~l~~l~~ri~~LL~s-----------~----~~--------~~rw~----G~~Ll~~~~~~~ 56 (165)
T PF08167_consen 4 LLSTLRSCGLLLSAPSKSALHKLVTRINSLLQS-----------K----SA--------YSRWA----GLCLLKVTVEQC 56 (165)
T ss_pred HHHHHHccchhhcccCHHHHHHHHHHHHHHhCC-----------C----Ch--------hhHHH----HHHHHHHHHHHh
Confidence 445667777766665 55666666664333311 1 00 11121 334555666664
Q ss_pred -HHhHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhh
Q psy10883 330 -HVLLVTECEIFLSLIIKFLDPDKPVWQRSLALEVLHKLC 368 (435)
Q Consensus 330 -~~~Lk~EiEvfls~l~~~Le~~~~~wqk~l~LEvl~~ic 368 (435)
.+.|..+.+.++..++++|+...|.--+..++..+.+|+
T Consensus 57 ~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~ 96 (165)
T PF08167_consen 57 SWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLF 96 (165)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 788999999999999999998888777778888887776
No 35
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=24.91 E-value=8.9e+02 Score=26.07 Aligned_cols=139 Identities=14% Similarity=0.148 Sum_probs=82.2
Q ss_pred hccChhHHHHHHHHHHHhhcCCCCCCccchhchhHHHHHHHHHhcCCChhHHHHHHHHHHHHHccCcCCccch-HHHHHH
Q psy10883 29 KKKFPQIKEACEEGILKLRNVSSNPQSQMHMVVNQILYPVVQGCETKDQKIIKMCISMMQRLITNQAIDQKGA-RYITDT 107 (435)
Q Consensus 29 krK~~~lk~a~e~al~~Lk~~~~~~~~~l~~~~~~~l~Pf~lac~sk~~kl~~~AL~~lqKLi~~~~i~~~~~-~~iv~~ 107 (435)
...++.+|+.+=+++..+-...+.. ..+ .....++..+..+....+..+...|...|.+|..+...-+... ...+..
T Consensus 87 ~h~~~~Vr~l~l~~l~~~~~~~~~~-~~~-~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~ 164 (503)
T PF10508_consen 87 THPSPKVRRLALKQLGRIARHSEGA-AQL-LVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSK 164 (503)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCHHH-HHH-hcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHH
Confidence 4466778877666655543332210 000 0224566667777788999999999999999998754221110 112566
Q ss_pred HHHHhcC-Chh-hHHHHHHHHHHHhcCCcccchHHHH--HHHHHhhhcccCChHHHhhHHHHHHHHH
Q psy10883 108 LWMLMES-GTE-EVKILQSCTLLLTTNSVVHGEILAK--NLVLCFRLHFAKDSTTINTAGATVRHLV 170 (435)
Q Consensus 108 l~~~~e~-~~e-qLkILQ~Ll~lvts~~~lhg~~L~~--av~~C~~l~~Sks~~v~~tA~ATL~Qiv 170 (435)
|..++.. +.. .+|++.++..+...+.... +.+.+ ++....+-..+.+..++-.|-..+.++.
T Consensus 165 L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~-~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La 230 (503)
T PF10508_consen 165 LKSLMSQSSDIVRCRVYELLVEIASHSPEAA-EAVVNSGLLDLLLKELDSDDILVQLNALELLSELA 230 (503)
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHhcCHHHH-HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 6666655 333 8888888777765431111 11111 3334444444578888888888888883
No 36
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=24.23 E-value=3.2e+02 Score=25.57 Aligned_cols=54 Identities=15% Similarity=0.129 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHhc--CCcccchHHHHHHHHHhhhcccCChHHHhhHHHHHHHHHH
Q psy10883 118 EVKILQSCTLLLTT--NSVVHGEILAKNLVLCFRLHFAKDSTTINTAGATVRHLVS 171 (435)
Q Consensus 118 qLkILQ~Ll~lvts--~~~lhg~~L~~av~~C~~l~~Sks~~v~~tA~ATL~Qiv~ 171 (435)
..+++|++-.++++ |..+..+.+-+.+..|..+..++++.++..|-..+.-+++
T Consensus 119 l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 119 LTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred HHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 78999999999988 4668899999999999997767887777766666665543
No 37
>cd07439 FANCE_c-term Fanconi anemia complementation group E protein, C-terminal domain. Fanconi Anemia (FA) is an autosomal recessive disorder associated with increased susceptibility to various cancers, bone marrow failure, cardiac, renal, and limb malformations, and other characteristics. Cells are highly sensitive to DNA damaging agents. A multi-subunit protein complex, the FA core complex, is responsible for ubiquitination of the protein FANCD2 in response to DNA damage. This monoubiquitination results in a downstream effect on homology-directed DNA repair. FANCE is part of the FA core complex and its C-terminal domain, which is modeled here, has been shown to directly interact with FANCD2. The domain contains a five-fold repeat of a structural unit similar to ARM and HEAT repeats. FANCE appears conserved in metazoa and in plants.
Probab=23.08 E-value=7.4e+02 Score=24.47 Aligned_cols=125 Identities=15% Similarity=0.213 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhccChhHHHHHHHHHHHhhcCCC-CC-Cccc-----h--hchhHHHHHHHHHhcCCChhHHHHHHHHHHH
Q psy10883 19 NDLKNLSIETKKKFPQIKEACEEGILKLRNVSS-NP-QSQM-----H--MVVNQILYPVVQGCETKDQKIIKMCISMMQR 89 (435)
Q Consensus 19 ~dL~~L~~e~krK~~~lk~a~e~al~~Lk~~~~-~~-~~~l-----~--~~~~~~l~Pf~lac~sk~~kl~~~AL~~lqK 89 (435)
+-|-+...+-.+||| +-+||..+.-|..... ++ ...+ + ..++.+..|+.......+-+=....+.++|-
T Consensus 100 R~L~~al~~f~~r~~--~~~ceall~PLl~~~~~~~~q~ell~rlike~~~~~~~~l~~~q~L~~~~~~W~E~~~~v~q~ 177 (254)
T cd07439 100 RALVAALASFAKRYP--RPFCEALLRPLLQCPHPGPFQAELLCRLVKECFEPDAVLLLLHQILISPNLVWTEETFTVIQA 177 (254)
T ss_pred HHHHHHHHHHHHhCC--hhHHHHHHHHHHHCCCCCHHHHHHHHHHHhccccHHHHHHHHHHHHccccccccHHHHHHHHH
Confidence 445555556568888 7888888766665543 21 1100 0 1346778888888877777788899999999
Q ss_pred HHccCc-CCccchHHHHHHHHHHhcCChhhHHHHHHHHHHHhcC-Cc---ccchHHHHHHH
Q psy10883 90 LITNQA-IDQKGARYITDTLWMLMESGTEEVKILQSCTLLLTTN-SV---VHGEILAKNLV 145 (435)
Q Consensus 90 Li~~~~-i~~~~~~~iv~~l~~~~e~~~eqLkILQ~Ll~lvts~-~~---lhg~~L~~av~ 145 (435)
+++.+. ++++.++..++.++...+.=.--+|--+.++.++|.| .. -|-..|..++.
T Consensus 178 lL~~~~~lte~~~~~Lv~~L~~~a~~~skSlkFa~lll~~itky~~~~~~~~~~~L~~~~~ 238 (254)
T cd07439 178 LLNRKPPLSEESFSELVSKLQEQAEAFSKSLKFAKLLLAVITKYGPQMSPAHKQSLSEALE 238 (254)
T ss_pred HHhcCCCCCHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHccHhhcHHHHHHHHHHHH
Confidence 999998 6788888888877655332222577778888888885 22 24444444443
No 38
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=20.93 E-value=1.2e+02 Score=30.19 Aligned_cols=90 Identities=22% Similarity=0.311 Sum_probs=58.5
Q ss_pred CchHHH-HHHHHHHHHHHHHHHHhHHHHHHHHH------HHHHHhhCCCCChHHHHHHHHHHHHhhcChHHHHHHHHhcC
Q psy10883 310 PYFPIS-VRLLRVVSILVQKYHVLLVTECEIFL------SLIIKFLDPDKPVWQRSLALEVLHKLCVQTELLKAFCQSYD 382 (435)
Q Consensus 310 ~~F~l~-~r~~ri~~~Ll~~~~~~Lk~EiEvfl------s~l~~~Le~~~~~wqk~l~LEvl~~ic~dp~~l~~iy~nYD 382 (435)
..|+-. +-++.++..|++.= ..|+--|| ...++++|.+ +.--|.++..++.+|..|..-+.-++.+||
T Consensus 107 r~~E~LRLtsLGVIgaLvK~d----~~evi~fLl~tEiiplcLr~me~G-selSKtvAtfIlqKIL~dd~GL~yiC~t~e 181 (262)
T PF04078_consen 107 RPFEYLRLTSLGVIGALVKTD----DPEVISFLLQTEIIPLCLRIMEFG-SELSKTVATFILQKILLDDVGLNYICQTAE 181 (262)
T ss_dssp HHHHHHHHHHHHHHHHHHTT------HHHHHHHHCTTHHHHHHHHHHHS--HHHHHHHHHHHHHHHHSHHHHHHHTSSHH
T ss_pred cccchhhHhHHHHHHHHHcCC----cHHHHHHHHhhchHHHHHHHHHhc-cHHHHHHHHHHHHHHHcchhHHHHHhcCHH
Confidence 346643 22677777776521 11222222 3445677765 467789999999999999998888876655
Q ss_pred CCCCCchHHHHHHHHHHHHHhhhhcCCCC
Q psy10883 383 LKDHTTHIFQDIVNSLATYVHSVFLNSSP 411 (435)
Q Consensus 383 cd~~~~nIfe~lv~~Lsk~~q~~~~~~~~ 411 (435)
=|..+.+.|++++.+...+|++
T Consensus 182 -------Rf~av~~vL~~mV~~l~~~pS~ 203 (262)
T PF04078_consen 182 -------RFFAVAMVLNKMVEQLVKQPSP 203 (262)
T ss_dssp -------HHHHHHHHHHHHHHHHHHS--H
T ss_pred -------HHHHHHHHHHHHHHHHccCCCh
Confidence 5778888888888887777754
No 39
>KOG1848|consensus
Probab=20.12 E-value=1.5e+02 Score=36.09 Aligned_cols=78 Identities=17% Similarity=0.130 Sum_probs=52.9
Q ss_pred HHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhh-CCCCChHHHHHHHHHHHHhhcChHHHHHHHHhcCCCCCCchH
Q psy10883 313 PISVRLL-RVVSILVQKYHVLLVTECEIFLSLIIKFL-DPDKPVWQRSLALEVLHKLCVQTELLKAFCQSYDLKDHTTHI 390 (435)
Q Consensus 313 ~l~~r~~-ri~~~Ll~~~~~~Lk~EiEvfls~l~~~L-e~~~~~wqk~l~LEvl~~ic~dp~~l~~iy~nYDcd~~~~nI 390 (435)
|...|++ |.+..+-+.++...-.++|+++..+..++ ......|++.+-.++..++.+++...+.+|..|+.-+.+.-+
T Consensus 279 Py~~Rl~~~sv~~i~~l~~~ea~~~~ev~lnvi~slisn~~ll~~~~~~s~~~~kdlv~~l~~~v~l~~~~i~v~~~v~l 358 (1610)
T KOG1848|consen 279 PYAERLLLRSVDLIQKLACHEAVVNEEVLLNVIKSLISNTNLLFDPESLSYPCSKDLVWKLAVSVLLYVLSIGVPVAVFL 358 (1610)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhcccccchhhccccccHHHHhHHhHHHheeecccCcchhhhH
Confidence 3445533 33333334467777778888887665443 333367999999999999999999999999888866554433
Done!