Query psy10883
Match_columns 435
No_of_seqs 134 out of 439
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 20:54:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10883.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10883hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qk2_A LP04448P; mini spindles 92.8 5.5 0.00019 36.2 17.4 139 29-175 67-209 (242)
2 4fdd_A Transportin-1; heat rep 87.7 34 0.0012 37.0 28.3 281 1-371 3-287 (852)
3 1qgr_A Protein (importin beta 85.4 42 0.0014 35.8 26.8 309 30-403 377-722 (876)
4 1w63_A Adapter-related protein 85.2 21 0.00072 37.6 16.3 71 5-91 100-170 (618)
5 2qk2_A LP04448P; mini spindles 81.0 27 0.00092 31.4 13.4 79 28-115 107-188 (242)
6 2vgl_B AP-2 complex subunit be 75.9 50 0.0017 34.3 15.2 130 30-168 132-265 (591)
7 3b2a_A TON_1937, putative unch 72.6 66 0.0023 30.5 14.0 132 29-169 43-177 (265)
8 4fdd_A Transportin-1; heat rep 69.9 1.2E+02 0.0042 32.5 29.5 332 29-404 369-743 (852)
9 4db6_A Armadillo repeat protei 68.1 58 0.002 28.0 11.6 139 30-170 65-208 (210)
10 2qk1_A Protein STU2; STU2P, XM 67.9 75 0.0026 29.2 15.2 146 29-176 71-225 (249)
11 4b8j_A Importin subunit alpha- 67.1 1.1E+02 0.0037 30.7 23.2 137 29-170 170-314 (528)
12 2qk1_A Protein STU2; STU2P, XM 65.9 38 0.0013 31.2 10.4 86 28-116 113-204 (249)
13 2bpt_A Importin beta-1 subunit 64.9 1.4E+02 0.0049 31.4 32.2 309 30-404 380-712 (861)
14 4hxt_A De novo protein OR329; 64.9 60 0.0021 28.3 11.3 147 21-169 4-155 (252)
15 2bpt_A Importin beta-1 subunit 63.4 1.5E+02 0.0053 31.2 32.5 114 60-173 176-297 (861)
16 1ibr_B P95, importin beta-1 su 62.7 1.1E+02 0.0038 29.3 21.9 64 21-94 3-68 (462)
17 4b8j_A Importin subunit alpha- 61.7 1.3E+02 0.0046 30.0 22.0 107 63-169 160-271 (528)
18 4db8_A Armadillo-repeat protei 58.9 61 0.0021 28.7 10.2 137 29-170 106-250 (252)
19 4hxt_A De novo protein OR329; 58.1 94 0.0032 27.0 11.5 140 29-171 96-241 (252)
20 4db8_A Armadillo-repeat protei 55.2 78 0.0027 27.9 10.3 140 29-170 64-208 (252)
21 1wa5_B Importin alpha subunit; 53.1 1.9E+02 0.0064 29.0 19.1 108 63-170 173-285 (530)
22 1wa5_B Importin alpha subunit; 52.9 1.9E+02 0.0065 28.9 25.5 138 30-169 184-326 (530)
23 4ffb_C Protein STU2; tubulin f 47.6 89 0.003 28.7 9.6 54 62-115 138-195 (278)
24 3b2a_A TON_1937, putative unch 47.0 1.7E+02 0.006 27.6 11.1 102 64-166 34-139 (265)
25 1w63_A Adapter-related protein 41.8 3.2E+02 0.011 28.4 24.8 49 62-115 106-154 (618)
26 4db6_A Armadillo repeat protei 38.1 1.7E+02 0.0059 24.8 9.4 140 29-170 22-166 (210)
27 1xqr_A HSPBP1 protein; armadil 38.0 1.8E+02 0.006 27.6 10.1 105 63-172 81-197 (296)
28 1u6g_C TIP120 protein, CAND1; 37.3 4.8E+02 0.016 29.1 16.0 135 29-170 58-203 (1230)
29 1u6g_C TIP120 protein, CAND1; 36.9 4.9E+02 0.017 29.1 17.2 146 21-171 8-163 (1230)
30 1qgr_A Protein (importin beta 36.8 4E+02 0.014 28.0 32.1 110 61-172 170-289 (876)
31 2jdq_A Importin alpha-1 subuni 35.0 3E+02 0.01 26.1 24.4 109 62-170 106-220 (450)
32 2of3_A ZYG-9; multifunctional 34.2 2.5E+02 0.0087 26.4 10.4 36 62-97 166-201 (266)
33 2vgl_B AP-2 complex subunit be 29.4 2.8E+02 0.0097 28.4 10.9 97 66-170 89-188 (591)
34 2vgl_A Adaptor protein complex 29.1 2.2E+02 0.0075 29.8 10.0 74 4-93 103-178 (621)
35 2iw3_A Elongation factor 3A; a 25.4 4.9E+02 0.017 29.3 12.3 106 64-172 96-205 (986)
36 2fv2_A RCD1 required for cell 24.5 75 0.0026 30.3 4.7 92 310-411 113-209 (268)
37 3ltm_A Alpha-REP4; protein eng 24.0 3.3E+02 0.011 23.1 12.3 57 21-90 52-108 (211)
38 2oxl_A Hypothetical protein YM 22.6 1.6E+02 0.0053 21.9 5.2 36 332-367 2-37 (64)
39 1ibr_B P95, importin beta-1 su 21.7 5.1E+02 0.018 24.4 24.1 286 32-370 143-438 (462)
No 1
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=92.80 E-value=5.5 Score=36.19 Aligned_cols=139 Identities=6% Similarity=0.053 Sum_probs=100.7
Q ss_pred hccChhHHHHHHHHHHHhhcCCCCCCccchhchhHHHHHHHHHhcCCChhHHHHHHHHHHHHHccCcCCccchHHHHHHH
Q psy10883 29 KKKFPQIKEACEEGILKLRNVSSNPQSQMHMVVNQILYPVVQGCETKDQKIIKMCISMMQRLITNQAIDQKGARYITDTL 108 (435)
Q Consensus 29 krK~~~lk~a~e~al~~Lk~~~~~~~~~l~~~~~~~l~Pf~lac~sk~~kl~~~AL~~lqKLi~~~~i~~~~~~~iv~~l 108 (435)
+.+|+.+++++=.++..|-..-.. ........++.+++-.+..+++.+-..|..++..++..- .++.+++.+
T Consensus 67 kd~~~~V~~~a~~~l~~la~~l~~---~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~-----~~~~ll~~l 138 (242)
T 2qk2_A 67 KDSNVVLVAMAGKCLALLAKGLAK---RFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST-----SLEAQQESI 138 (242)
T ss_dssp HCSCHHHHHHHHHHHHHHHHHHGG---GGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS-----CHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC-----CHHHHHHHH
Confidence 457888988888887666543211 122235678899999999999999999999999998743 356777777
Q ss_pred HHHhcCCh-h-hHHHHHHHHHHHhcC-C-cccchHHHHHHHHHhhhcccCChHHHhhHHHHHHHHHHHHHh
Q psy10883 109 WMLMESGT-E-EVKILQSCTLLLTTN-S-VVHGEILAKNLVLCFRLHFAKDSTTINTAGATVRHLVSHVFE 175 (435)
Q Consensus 109 ~~~~e~~~-e-qLkILQ~Ll~lvts~-~-~lhg~~L~~av~~C~~l~~Sks~~v~~tA~ATL~Qiv~~VF~ 175 (435)
...++... . +..++..+..++... . ......+-.++-....+...+++.++..|..++..+...|=+
T Consensus 139 ~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 139 VESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCH
Confidence 66665432 2 778888888877763 2 244566666777777666667788999999999999877743
No 2
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=87.66 E-value=34 Score=36.96 Aligned_cols=281 Identities=10% Similarity=0.079 Sum_probs=153.4
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHhhcCCCCCCccchhchhHHHHHHHHHhcCCChhHH
Q psy10883 1 MGARQNPELSLKFLDSLQNDLKNLSIETKKKFPQIKEACEEGILKLRNVSSNPQSQMHMVVNQILYPVVQGCETKDQKII 80 (435)
Q Consensus 1 ~~~~~~~~~~~~~~~~L~~dL~~L~~e~krK~~~lk~a~e~al~~Lk~~~~~~~~~l~~~~~~~l~Pf~lac~sk~~kl~ 80 (435)
|....+|+....+.+.|...+ --+++.|+.+|+.++.++..+ +...++.-++....+.++.+-
T Consensus 3 ~~w~~~~~~~~~l~~~l~~~~--------s~d~~~r~~Ae~~L~~~~~~p---------~~~~~l~~il~~~~~~~~~vR 65 (852)
T 4fdd_A 3 YEWKPDEQGLQQILQLLKESQ--------SPDTTIQRTVQQKLEQLNQYP---------DFNNYLIFVLTKLKSEDEPTR 65 (852)
T ss_dssp --CCCCHHHHHHHHHHHHHHT--------CSCHHHHHHHHHHHHHHTTSH---------HHHHHHHHHHHTCTTSCHHHH
T ss_pred CCCCCChhhHHHHHHHHHHHh--------CcCHHHHHHHHHHHHHHHhCC---------CHHHHHHHHHhccCCCChHHH
Confidence 345556676666666555433 237889999999998876532 222344444444466778888
Q ss_pred HHHHHHHHHHHccCc--CCccchHHHHHHHHHHhcCChh--hHHHHHHHHHHHhcCCcccchHHHHHHHHHhhhcccCCh
Q psy10883 81 KMCISMMQRLITNQA--IDQKGARYITDTLWMLMESGTE--EVKILQSCTLLLTTNSVVHGEILAKNLVLCFRLHFAKDS 156 (435)
Q Consensus 81 ~~AL~~lqKLi~~~~--i~~~~~~~iv~~l~~~~e~~~e--qLkILQ~Ll~lvts~~~lhg~~L~~av~~C~~l~~Sks~ 156 (435)
..|.-.+.+.+.... ++++....|-+.+-.++..... +-++-+++-.+......-+-..+...+ .....+.++
T Consensus 66 ~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L---~~~l~~~~~ 142 (852)
T 4fdd_A 66 SLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKL---CSLLDSEDY 142 (852)
T ss_dssp HHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTTTCTTHHHHH---HHHHSCSSH
T ss_pred HHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCccccHHHHHHH---HHHHcCCCH
Confidence 899999999997654 5555555555555444433322 556666666666543111112222222 233345567
Q ss_pred HHHhhHHHHHHHHHHHHHhcccccccccccCCCCCCCCcccccCCCCCCCCCCCCcchhhHHHHHHHHHHHhCCCCcchh
Q psy10883 157 TTINTAGATVRHLVSHVFERVLLEDDQFREEDHKPRNINYEELKTPSNIPPKGIRPCAGDAYLMFQDLVQLVNTDQPYWL 236 (435)
Q Consensus 157 ~v~~tA~ATL~Qiv~~VF~Rv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DA~lvF~dLC~Ls~~~~~~~l 236 (435)
.++..|-.++..++...-+...... .... .-.++..|.++.....
T Consensus 143 ~~r~~al~~L~~i~~~~~~~~~~~~----------------------------~~~~---~~~il~~l~~~l~~~~---- 187 (852)
T 4fdd_A 143 NTCEGAFGALQKICEDSAEILDSDV----------------------------LDRP---LNIMIPKFLQFFKHSS---- 187 (852)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHCS----------------------------SSSC---HHHHHHHHTTTTTCSS----
T ss_pred HHHHHHHHHHHHHHHHhHHHhchhh----------------------------hcch---HHHHHHHHHHHhcCCC----
Confidence 7777777777777544321111000 0000 1112222222222111
Q ss_pred hcccchhhHhHHHHHHHHHHcCCccccCChhHHHHHHHHHHHHHHHhcCccccccccccCCCCCCCCCCCCCCCchHHHH
Q psy10883 237 IGMTEMTRTFGLELLESILINYPSVFYKHPEFSFLLKERVCALVIKLFSPNIKYRNNALSSSGSSQQNAPLDKPYFPISV 316 (435)
Q Consensus 237 ~~~~~~sk~lsLeLIesiL~~~~~~F~~~~~l~~llk~~Lcp~Llr~~s~n~~~~n~s~~~~ss~~~~~~~~~~~F~l~~ 316 (435)
..-|.-+++.+..++...+. .+... -+.+.+.+.+.+. .+...+-.
T Consensus 188 ----~~vR~~A~~aL~~~~~~~~~------~~~~~-~~~~l~~l~~~~~-----------------------d~~~~vr~ 233 (852)
T 4fdd_A 188 ----PKIRSHAVACVNQFIISRTQ------ALMLH-IDSFIENLFALAG-----------------------DEEPEVRK 233 (852)
T ss_dssp ----HHHHHHHHHHHHTTTTTTCH------HHHTS-HHHHHHHHHHHHT-----------------------CCCHHHHH
T ss_pred ----HHHHHHHHHHHHHHHhcccH------HHHHH-HHHHHHHHHHHcC-----------------------CCCHHHHH
Confidence 11355566655544432221 11111 1234556665431 23445544
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcCh
Q psy10883 317 RLLRVVSILVQKYHVLLVTECEIFLSLIIKFLDPDKPVWQRSLALEVLHKLCVQT 371 (435)
Q Consensus 317 r~~ri~~~Ll~~~~~~Lk~EiEvfls~l~~~Le~~~~~wqk~l~LEvl~~ic~dp 371 (435)
.+++++..+...+-..++.-++-++..++..+... ...-|..++|.+..+|..+
T Consensus 234 ~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~-~~~vr~~a~e~l~~l~~~~ 287 (852)
T 4fdd_A 234 NVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQ-DENVALEACEFWLTLAEQP 287 (852)
T ss_dssp HHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCC-cHHHHHHHHHHHHHHhcch
Confidence 57888888888888878777777777777776543 3456888899999988754
No 3
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=85.40 E-value=42 Score=35.77 Aligned_cols=309 Identities=11% Similarity=0.048 Sum_probs=155.5
Q ss_pred ccChhHHHHHHHHHHHhhcCCCCCCccchhchhHHHHHHHHHhcCCChhHHHHHHHHHHHHHccC--cC-CccchHHHHH
Q psy10883 30 KKFPQIKEACEEGILKLRNVSSNPQSQMHMVVNQILYPVVQGCETKDQKIIKMCISMMQRLITNQ--AI-DQKGARYITD 106 (435)
Q Consensus 30 rK~~~lk~a~e~al~~Lk~~~~~~~~~l~~~~~~~l~Pf~lac~sk~~kl~~~AL~~lqKLi~~~--~i-~~~~~~~iv~ 106 (435)
..++.+|+++=.++..+-..... ..+......++..++-+....++++-..|..++.++...- .+ ....++.++.
T Consensus 377 ~~~~~~r~~a~~~l~~i~~~~~~--~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~ 454 (876)
T 1qgr_A 377 NPDWRYRDAAVMAFGCILEGPEP--SQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQ 454 (876)
T ss_dssp CSSHHHHHHHHHHHHHTSSSSCH--HHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHH
Confidence 46788888887777666543220 0111122456666777778889999999999999998763 12 3455778888
Q ss_pred HHHHHhcCChh-hHHHHHHHHHHHhcC---------------CcccchHHHHHHHHHhhhc---ccCChHHHhhHHHHHH
Q psy10883 107 TLWMLMESGTE-EVKILQSCTLLLTTN---------------SVVHGEILAKNLVLCFRLH---FAKDSTTINTAGATVR 167 (435)
Q Consensus 107 ~l~~~~e~~~e-qLkILQ~Ll~lvts~---------------~~lhg~~L~~av~~C~~l~---~Sks~~v~~tA~ATL~ 167 (435)
.+..+++.+.. +....+++..++... ..+. ..+..++.....+. ...+..+...|-.++.
T Consensus 455 ~l~~~l~~~~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~-~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~ 533 (876)
T 1qgr_A 455 CLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLS-SSFELIVQKLLETTDRPDGHQNNLRSSAYESLM 533 (876)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSST-TTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhhhccccccccccccchhhh-HhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHH
Confidence 88777665433 666666666655431 0111 12233333333322 1122334444444444
Q ss_pred HHHHHHHhcccccccccccCCCCCCCCcccccCCCCCCCCCCCCcchhhHHHH----HHHHHHHhCCC-Ccchhhcccch
Q psy10883 168 HLVSHVFERVLLEDDQFREEDHKPRNINYEELKTPSNIPPKGIRPCAGDAYLM----FQDLVQLVNTD-QPYWLIGMTEM 242 (435)
Q Consensus 168 Qiv~~VF~Rv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DA~lv----F~dLC~Ls~~~-~~~~l~~~~~~ 242 (435)
.++.. +.. ...++....+-. +.....+.+.. ..... .....
T Consensus 534 ~l~~~----~~~-----------------------------~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~-~~~~~ 579 (876)
T 1qgr_A 534 EIVKN----SAK-----------------------------DCYPAVQKTTLVIMERLQQVLQMESHIQSTSDR-IQFND 579 (876)
T ss_dssp HHHHT----CCS-----------------------------TTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHH-HHHHH
T ss_pred HHHHH----Cch-----------------------------hhHHHHHHHHHHHHHHHHHHHHHHhccCChhhH-HHHHH
Confidence 44332 110 001122221111 11111111000 00000 00011
Q ss_pred hhHhHHHHHHHHHHcCC-ccccCChhHHHHHHHHHHHHHHHhcCccccccccccCCCCCCCCCCCCCCCchHHHHHHHHH
Q psy10883 243 TRTFGLELLESILINYP-SVFYKHPEFSFLLKERVCALVIKLFSPNIKYRNNALSSSGSSQQNAPLDKPYFPISVRLLRV 321 (435)
Q Consensus 243 sk~lsLeLIesiL~~~~-~~F~~~~~l~~llk~~Lcp~Llr~~s~n~~~~n~s~~~~ss~~~~~~~~~~~F~l~~r~~ri 321 (435)
-+...++.+..+....+ ..|..+ -..++|.+++.+... + ..+ .+-...++.
T Consensus 580 ~~~~~~~~l~~l~~~~~~~~~~~~-------~~~l~~~l~~~l~~~------~-------------~~~--~v~~~a~~~ 631 (876)
T 1qgr_A 580 LQSLLCATLQNVLRKVQHQDALQI-------SDVVMASLLRMFQST------A-------------GSG--GVQEDALMA 631 (876)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHTT-------HHHHHHHHHHHC------------------------CC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhhhHH-------HHHHHHHHHHHHHhc------c-------------CCC--CccHHHHHH
Confidence 24567778888887776 444322 256778888776310 0 001 122246667
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcC---------hHHHHHHHHhcCCCCCCchHHH
Q psy10883 322 VSILVQKYHVLLVTECEIFLSLIIKFLDPDKPVWQRSLALEVLHKLCVQ---------TELLKAFCQSYDLKDHTTHIFQ 392 (435)
Q Consensus 322 ~~~Ll~~~~~~Lk~EiEvfls~l~~~Le~~~~~wqk~l~LEvl~~ic~d---------p~~l~~iy~nYDcd~~~~nIfe 392 (435)
+..+.......+..-++-++..+++.|.......-|.-+++.+..++.- ++++..+...........++-+
T Consensus 632 l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ 711 (876)
T 1qgr_A 632 VSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKP 711 (876)
T ss_dssp HHHHHHHHGGGGGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhH
Confidence 7777777666666656667777777775432233455566666665431 3444445555443222344666
Q ss_pred HHHHHHHHHHh
Q psy10883 393 DIVNSLATYVH 403 (435)
Q Consensus 393 ~lv~~Lsk~~q 403 (435)
..+..++.++.
T Consensus 712 ~~~~~l~~i~~ 722 (876)
T 1qgr_A 712 QILSVFGDIAL 722 (876)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666655
No 4
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=85.19 E-value=21 Score=37.59 Aligned_cols=71 Identities=11% Similarity=0.105 Sum_probs=37.6
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHhhcCCCCCCccchhchhHHHHHHHHHhcCCChhHHHHHH
Q psy10883 5 QNPELSLKFLDSLQNDLKNLSIETKKKFPQIKEACEEGILKLRNVSSNPQSQMHMVVNQILYPVVQGCETKDQKIIKMCI 84 (435)
Q Consensus 5 ~~~~~~~~~~~~L~~dL~~L~~e~krK~~~lk~a~e~al~~Lk~~~~~~~~~l~~~~~~~l~Pf~lac~sk~~kl~~~AL 84 (435)
.+|+...-....|..||+ -+|+.+|-.+=+++..++... -.+.++.++.-+..+.++.+-..|+
T Consensus 100 ~~~e~~~l~in~l~kDL~-------~~n~~vr~lAL~~L~~i~~~~---------~~~~l~~~l~~~L~~~~~~VRk~A~ 163 (618)
T 1w63_A 100 ERQDVHLLMTNCIKNDLN-------HSTQFVQGLALCTLGCMGSSE---------MCRDLAGEVEKLLKTSNSYLRKKAA 163 (618)
T ss_dssp CCHHHHHHHHHHHHHHHS-------CSSSHHHHHHHHHHHHHCCHH---------HHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcC-------CCCHhHHHHHHHHHHhcCCHH---------HHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 456655556666666654 255555555555555554210 1234555555555555555555555
Q ss_pred HHHHHHH
Q psy10883 85 SMMQRLI 91 (435)
Q Consensus 85 ~~lqKLi 91 (435)
-|+.|+.
T Consensus 164 ~al~~l~ 170 (618)
T 1w63_A 164 LCAVHVI 170 (618)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
No 5
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=81.01 E-value=27 Score=31.45 Aligned_cols=79 Identities=19% Similarity=0.236 Sum_probs=59.9
Q ss_pred HhccChhHHHHHHHHHHHhhcCCCCCCccchhchhHHHHHHHHHhcCCChhHHHHHHHHHHHHHccC---cCCccchHHH
Q psy10883 28 TKKKFPQIKEACEEGILKLRNVSSNPQSQMHMVVNQILYPVVQGCETKDQKIIKMCISMMQRLITNQ---AIDQKGARYI 104 (435)
Q Consensus 28 ~krK~~~lk~a~e~al~~Lk~~~~~~~~~l~~~~~~~l~Pf~lac~sk~~kl~~~AL~~lqKLi~~~---~i~~~~~~~i 104 (435)
.+-+++.+|+++..++..+-...+ .+.++..+.-+.+++++++-..+++.|.+++... .+....++.+
T Consensus 107 l~d~~~~vr~~a~~aL~~~~~~~~---------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l 177 (242)
T 2qk2_A 107 FKEKKPNVVTALREAIDAIYASTS---------LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLL 177 (242)
T ss_dssp GGCCCHHHHHHHHHHHHHHHTTSC---------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHH
Confidence 455778999999999987754321 3578888889999999999999999999977652 2334456778
Q ss_pred HHHHHHHhcCC
Q psy10883 105 TDTLWMLMESG 115 (435)
Q Consensus 105 v~~l~~~~e~~ 115 (435)
+..+..++++.
T Consensus 178 ~p~l~~~l~D~ 188 (242)
T 2qk2_A 178 TTSLVKTLNEP 188 (242)
T ss_dssp HHHHHHHHTSS
T ss_pred HHHHHHHhcCC
Confidence 88887777654
No 6
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=75.94 E-value=50 Score=34.29 Aligned_cols=130 Identities=8% Similarity=0.042 Sum_probs=73.8
Q ss_pred ccChhHHHHHHHHHHHhhcCCCCCCccchhchhHHHHHHHHHhcCCChhHHHHHHHHHHHHHccCcCC--ccchHHHHHH
Q psy10883 30 KKFPQIKEACEEGILKLRNVSSNPQSQMHMVVNQILYPVVQGCETKDQKIIKMCISMMQRLITNQAID--QKGARYITDT 107 (435)
Q Consensus 30 rK~~~lk~a~e~al~~Lk~~~~~~~~~l~~~~~~~l~Pf~lac~sk~~kl~~~AL~~lqKLi~~~~i~--~~~~~~iv~~ 107 (435)
-++|.+|+++=.++..+-...+. .+ ....++..+.-....+++.+...|+.+|..+...+.=. -...+.++..
T Consensus 132 d~~~~VRk~A~~al~~i~~~~p~---~~--~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~ 206 (591)
T 2vgl_B 132 DEDPYVRKTAAVCVAKLHDINAQ---MV--EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINK 206 (591)
T ss_dssp CSCHHHHHHHHHHHHHHHHSSCC---CH--HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhhChh---hc--ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHH
Confidence 46899998888888776553321 11 11357778888888999999999999999988765310 1122333333
Q ss_pred HHHHhcCChh--hHHHHHHHHHHHhcCCcccchHHHHHHHHHhhhcccCChHHHhhHHHHHHH
Q psy10883 108 LWMLMESGTE--EVKILQSCTLLLTTNSVVHGEILAKNLVLCFRLHFAKDSTTINTAGATVRH 168 (435)
Q Consensus 108 l~~~~e~~~e--qLkILQ~Ll~lvts~~~lhg~~L~~av~~C~~l~~Sks~~v~~tA~ATL~Q 168 (435)
+...+...++ |.++|+++..+. .-.++...+++..+..+..+.++.|.-.|..++.+
T Consensus 207 Ll~~l~~~~~~~q~~il~~l~~l~----~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~ 265 (591)
T 2vgl_B 207 LLTALNECTEWGQIFILDCLSNYN----PKDDREAQSICERVTPRLSHANSAVVLSAVKVLMK 265 (591)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHTSC----CCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHH
T ss_pred HHHcCCCCCchHHHHHHHHHHHhC----CCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 3333332333 888888653222 11223344455555543334444444444444433
No 7
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=72.60 E-value=66 Score=30.48 Aligned_cols=132 Identities=11% Similarity=0.073 Sum_probs=90.1
Q ss_pred hccChhHHHHHHHHHHHhhcCCCCCCccch-hchhHHHHHHHHHhcCCChhHHHHHHHHHHHHHccCcCCccchHHHHHH
Q psy10883 29 KKKFPQIKEACEEGILKLRNVSSNPQSQMH-MVVNQILYPVVQGCETKDQKIIKMCISMMQRLITNQAIDQKGARYITDT 107 (435)
Q Consensus 29 krK~~~lk~a~e~al~~Lk~~~~~~~~~l~-~~~~~~l~Pf~lac~sk~~kl~~~AL~~lqKLi~~~~i~~~~~~~iv~~ 107 (435)
.-|++.+|..+=.+++.+=...+. .++ ...+.+|.-++-...+++-|+..-|+-||..|+...=++++....+.++
T Consensus 43 ~dkD~~vk~raL~~LeellK~~~~---~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~a 119 (265)
T 3b2a_A 43 GEDDETTRLRAFVALGEILKRADS---DLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKAAKT 119 (265)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHSCH---HHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHH
T ss_pred hccchHHHHHHHHHHHHHHHhccc---cccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 445566665555555333221110 011 1246777777767799999999999999999999999999999999999
Q ss_pred HHHHhcCChh--hHHHHHHHHHHHhcCCcccchHHHHHHHHHhhhcccCChHHHhhHHHHHHHH
Q psy10883 108 LWMLMESGTE--EVKILQSCTLLLTTNSVVHGEILAKNLVLCFRLHFAKDSTTINTAGATVRHL 169 (435)
Q Consensus 108 l~~~~e~~~e--qLkILQ~Ll~lvts~~~lhg~~L~~av~~C~~l~~Sks~~v~~tA~ATL~Qi 169 (435)
+.+....+.+ .+...-.+-.+ .-.. ..-+++...+++..||+.-++..|-..++.|
T Consensus 120 L~dlik~~~~il~~eaae~Lgkl-kv~~-----~~~~V~~~l~sLl~Skd~~vK~agl~~L~ei 177 (265)
T 3b2a_A 120 LVSLLESPDDMMRIETIDVLSKL-QPLE-----DSKLVRTYINELVVSPDLYTKVAGFCLFLNM 177 (265)
T ss_dssp HHHHTTSCCHHHHHHHHHHHHHC-CBSC-----CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCchHHHHHHHHhCcC-Cccc-----chHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 9998876544 44333333333 1110 0145666777877999999999998888877
No 8
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=69.89 E-value=1.2e+02 Score=32.48 Aligned_cols=332 Identities=11% Similarity=0.069 Sum_probs=167.6
Q ss_pred hccChhHHHHHHHHHHHhhcCCCCCCccchhchhHHHHHHHHHhcCCChhHHHHHHHHHHHHHccC--cCCccchHHHHH
Q psy10883 29 KKKFPQIKEACEEGILKLRNVSSNPQSQMHMVVNQILYPVVQGCETKDQKIIKMCISMMQRLITNQ--AIDQKGARYITD 106 (435)
Q Consensus 29 krK~~~lk~a~e~al~~Lk~~~~~~~~~l~~~~~~~l~Pf~lac~sk~~kl~~~AL~~lqKLi~~~--~i~~~~~~~iv~ 106 (435)
...++.+|+++=.++..+-...+. .+......++.++.-.+...++++-..|..++.++..+- .......+.++.
T Consensus 369 ~~~~~~~R~aa~~alg~i~~~~~~---~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~ 445 (852)
T 4fdd_A 369 FHHEWVVKESGILVLGAIAEGCMQ---GMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMT 445 (852)
T ss_dssp TCSSHHHHHHHHHHHHHTTTTTHH---HHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhcchH---HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 345788999887777776544321 111234577777888888889999999999999887642 112334567777
Q ss_pred HHHHHhcCC-hh-hHHHHHHHHHHHhc-CCcc--cchHHHHHHHHHhhhcccCChHHHhhHHHHHHHHHHHHHhcccccc
Q psy10883 107 TLWMLMESG-TE-EVKILQSCTLLLTT-NSVV--HGEILAKNLVLCFRLHFAKDSTTINTAGATVRHLVSHVFERVLLED 181 (435)
Q Consensus 107 ~l~~~~e~~-~e-qLkILQ~Ll~lvts-~~~l--hg~~L~~av~~C~~l~~Sks~~v~~tA~ATL~Qiv~~VF~Rv~~~~ 181 (435)
.+..++..+ .+ +-....++..++.. ...+ +-+.+...+..+++-+..+ +... +-+.+..+++.+....
T Consensus 446 ~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~---~~~~----~~~ai~~l~~~~~~~~ 518 (852)
T 4fdd_A 446 ELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHK---NLLI----LYDAIGTLADSVGHHL 518 (852)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHH---HHHH----HHHHHHHHHHHHGGGG
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChH---HHHH----HHHHHHHHHHHhhhhh
Confidence 776666443 23 77777777776654 2212 3344555554454422111 1111 2233333333332111
Q ss_pred cccc--cCCCCCCCCcc-cccCCCCCCC--------------CCCCCcchhhHHHHHHHHHHHhCC---------CCcch
Q psy10883 182 DQFR--EEDHKPRNINY-EELKTPSNIP--------------PKGIRPCAGDAYLMFQDLVQLVNT---------DQPYW 235 (435)
Q Consensus 182 ~~~~--~~~~~~~~~~~-~~~~~~~~~~--------------~~~~~~~~~DA~lvF~dLC~Ls~~---------~~~~~ 235 (435)
...+ ...- |.-... .....++..- .....+|.. .+|..++.+... ..|..
T Consensus 519 ~~~~~~~~l~-p~l~~~~~~l~d~~~~~~~~~~~l~~i~~~~g~~~~~~~~---~i~~~~~~~l~~~l~~~~~~~~~~~~ 594 (852)
T 4fdd_A 519 NKPEYIQMLM-PPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCE---PVYQRCVNLVQKTLAQAMLNNAQPDQ 594 (852)
T ss_dssp CCHHHHHHHH-HHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHGGGGHHHHH---HHHHHHHHHHHHHHHHHHHHHHCTTT
T ss_pred ccHHHHHHHH-HHHHHHHHhcccccHHHHHHHHHHHHHHHHHhHhHHHHHH---HHHHHHHHHHHHHHHHHHHhhcCCcc
Confidence 0000 0000 000000 0000000000 000111211 122222222110 00000
Q ss_pred hhcccchhhHhHHHHHHHHHHcCCccccCChhHHHHH-HHHHHHHHHHhcCccccccccccCCCCCCCCCCCCCCCchHH
Q psy10883 236 LIGMTEMTRTFGLELLESILINYPSVFYKHPEFSFLL-KERVCALVIKLFSPNIKYRNNALSSSGSSQQNAPLDKPYFPI 314 (435)
Q Consensus 236 l~~~~~~sk~lsLeLIesiL~~~~~~F~~~~~l~~ll-k~~Lcp~Llr~~s~n~~~~n~s~~~~ss~~~~~~~~~~~F~l 314 (435)
.......-+.-++++|..+.+.-|.-|.. .+ ...+.+.+++.+. .+...+
T Consensus 595 ~~~~d~~~~~~~l~~l~~l~~~l~~~~~~------~~~~~~~~~~l~~~l~-----------------------~~~~~v 645 (852)
T 4fdd_A 595 YEAPDKDFMIVALDLLSGLAEGLGGNIEQ------LVARSNILTLMYQCMQ-----------------------DKMPEV 645 (852)
T ss_dssp SCCCCTHHHHHHHHHHHHHHHHHGGGGHH------HHHTCCHHHHHHHHTT-----------------------CSSHHH
T ss_pred cCCCcchHHHHHHHHHHHHHHHHhHhHHH------HhcCCcHHHHHHHHhC-----------------------CCChhH
Confidence 00000113455677777777665544422 22 1345677777652 123344
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcC---------hHHHHHHHHhcCCCC
Q psy10883 315 SVRLLRVVSILVQKYHVLLVTECEIFLSLIIKFLDPDKPVWQRSLALEVLHKLCVQ---------TELLKAFCQSYDLKD 385 (435)
Q Consensus 315 ~~r~~ri~~~Ll~~~~~~Lk~EiEvfls~l~~~Le~~~~~wqk~l~LEvl~~ic~d---------p~~l~~iy~nYDcd~ 385 (435)
-...+.++..+.+.+...++.-++.|+..+++.|+.+. ...|.-+...+..++.. +.++..++..++...
T Consensus 646 r~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~-~~v~~~a~~alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~ 724 (852)
T 4fdd_A 646 RQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEF-ISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPN 724 (852)
T ss_dssp HHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTS-HHHHHHHHHHHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccc-hHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHhCCCC
Confidence 33466677777777888888878888888888886553 33344444444444321 256667777776544
Q ss_pred CCchHHHHHHHHHHHHHhh
Q psy10883 386 HTTHIFQDIVNSLATYVHS 404 (435)
Q Consensus 386 ~~~nIfe~lv~~Lsk~~q~ 404 (435)
...++-+..+.+++|+...
T Consensus 725 ~~~~~~~~a~~~igrl~~~ 743 (852)
T 4fdd_A 725 TPKTLLENTAITIGRLGYV 743 (852)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHh
Confidence 4678999999999999876
No 9
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=68.09 E-value=58 Score=27.95 Aligned_cols=139 Identities=11% Similarity=0.059 Sum_probs=76.7
Q ss_pred ccChhHHHHHHHHHHHhhcCCCCCCccchhchhHHHHHHHHHhcCCChhHHHHHHHHHHHHHccCcCCccc--hHHHHHH
Q psy10883 30 KKFPQIKEACEEGILKLRNVSSNPQSQMHMVVNQILYPVVQGCETKDQKIIKMCISMMQRLITNQAIDQKG--ARYITDT 107 (435)
Q Consensus 30 rK~~~lk~a~e~al~~Lk~~~~~~~~~l~~~~~~~l~Pf~lac~sk~~kl~~~AL~~lqKLi~~~~i~~~~--~~~iv~~ 107 (435)
..++++++.+=.++..|-...+..... ......+.+++-..++.++.+...|..+|..|...+--.... -..++..
T Consensus 65 ~~~~~v~~~a~~~L~~l~~~~~~~~~~--i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~ 142 (210)
T 4db6_A 65 SPNEQILQEALWALSNIASGGNEQIQA--VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPA 142 (210)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHH--HHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCcHHHHH--HHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHH
Confidence 345666665555555443221100000 011346788888889999999999999999997642110000 0123444
Q ss_pred HHHHhcCCh-h-hHHHHHHHHHHHhcCCcccchHH-HHHHHHHhhhcccCChHHHhhHHHHHHHHH
Q psy10883 108 LWMLMESGT-E-EVKILQSCTLLLTTNSVVHGEIL-AKNLVLCFRLHFAKDSTTINTAGATVRHLV 170 (435)
Q Consensus 108 l~~~~e~~~-e-qLkILQ~Ll~lvts~~~lhg~~L-~~av~~C~~l~~Sks~~v~~tA~ATL~Qiv 170 (435)
+..++..++ + +...+.+|..+...+........ ..++....++..+.++.++..|...|.++.
T Consensus 143 L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 143 LVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 545555443 3 77777777777665211111000 013444444555678889999998888773
No 10
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=67.93 E-value=75 Score=29.19 Aligned_cols=146 Identities=8% Similarity=0.017 Sum_probs=94.2
Q ss_pred hccChhHHHHHHHHHHHhhcCCC-CCCccchhchhHHHHHHHHHhcCCChhHHHHHHHHHHHHHccC-cCCc-cchHHHH
Q psy10883 29 KKKFPQIKEACEEGILKLRNVSS-NPQSQMHMVVNQILYPVVQGCETKDQKIIKMCISMMQRLITNQ-AIDQ-KGARYIT 105 (435)
Q Consensus 29 krK~~~lk~a~e~al~~Lk~~~~-~~~~~l~~~~~~~l~Pf~lac~sk~~kl~~~AL~~lqKLi~~~-~i~~-~~~~~iv 105 (435)
+.+|+.++.++=+++..|-..-. ..... .-...++.+++-....|.+.+...+-.++..++.+- -+.. ..++.++
T Consensus 71 ~D~n~~v~~~A~~al~~la~~l~~~~f~~--~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll 148 (249)
T 2qk1_A 71 KDANIQAVALAAQSVELICDKLKTPGFSK--DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDML 148 (249)
T ss_dssp HCSCHHHHHHHHHHHHHHHHHHCTTTSCH--HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHhcccccccH--HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHH
Confidence 67889999888888877654322 11110 123567788888888898999888888888888752 1111 1256777
Q ss_pred HHHHHHhcCCh--hhHHHHHHHHHHHhcCCcc---cchHH-HHHHHHHhhhcccCChHHHhhHHHHHHHHHHHHHhc
Q psy10883 106 DTLWMLMESGT--EEVKILQSCTLLLTTNSVV---HGEIL-AKNLVLCFRLHFAKDSTTINTAGATVRHLVSHVFER 176 (435)
Q Consensus 106 ~~l~~~~e~~~--eqLkILQ~Ll~lvts~~~l---hg~~L-~~av~~C~~l~~Sks~~v~~tA~ATL~Qiv~~VF~R 176 (435)
+.+...++... .+...+.++-.++...... -...+ -.++..+.++..-.++.|+..|..+|.-+...|=++
T Consensus 149 ~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~ 225 (249)
T 2qk1_A 149 KDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMN 225 (249)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSG
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHH
Confidence 77766666532 2666777777777654211 11233 445555555444457789999999999987776554
No 11
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=67.09 E-value=1.1e+02 Score=30.69 Aligned_cols=137 Identities=12% Similarity=0.068 Sum_probs=75.3
Q ss_pred hccChhHHHHHHHHHHHhhcCCCCCCccchh--chhHHHHHHHHHh-cCCChhHHHHHHHHHHHHHccCcC-CccchHHH
Q psy10883 29 KKKFPQIKEACEEGILKLRNVSSNPQSQMHM--VVNQILYPVVQGC-ETKDQKIIKMCISMMQRLITNQAI-DQKGARYI 104 (435)
Q Consensus 29 krK~~~lk~a~e~al~~Lk~~~~~~~~~l~~--~~~~~l~Pf~lac-~sk~~kl~~~AL~~lqKLi~~~~i-~~~~~~~i 104 (435)
+..++++|+.+=.++..|-...+. .+. .....+.|++-.+ .+.++.+...|+.+|..|....-- .......+
T Consensus 170 ~~~~~~v~~~a~~aL~~l~~~~~~----~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~ 245 (528)
T 4b8j_A 170 GSSSDDVREQAVWALGNVAGDSPK----CRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPA 245 (528)
T ss_dssp TCSCHHHHHHHHHHHHHHHHTCHH----HHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTH
T ss_pred cCCCHHHHHHHHHHHHHHhCCChh----hHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHH
Confidence 335677777777777666432210 000 1124677888777 677899999999999999887521 11122345
Q ss_pred HHHHHHHhcCChh--hHHHHHHHHHHHhcCCcccchHHH--HHHHHHhhhcccCChHHHhhHHHHHHHHH
Q psy10883 105 TDTLWMLMESGTE--EVKILQSCTLLLTTNSVVHGEILA--KNLVLCFRLHFAKDSTTINTAGATVRHLV 170 (435)
Q Consensus 105 v~~l~~~~e~~~e--qLkILQ~Ll~lvts~~~lhg~~L~--~av~~C~~l~~Sks~~v~~tA~ATL~Qiv 170 (435)
+..|..++..++. +...+.+|-.+....... -..+. .++.....+..+.++.++..|..+|..+.
T Consensus 246 l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~-~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~ 314 (528)
T 4b8j_A 246 LPALARLIHSNDEEVLTDACWALSYLSDGTNDK-IQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIV 314 (528)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHH-HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHH-HHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHH
Confidence 5555555544332 555555555544321100 00111 13334444444456677777777777774
No 12
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=65.89 E-value=38 Score=31.23 Aligned_cols=86 Identities=14% Similarity=0.183 Sum_probs=60.0
Q ss_pred HhccChhHHHHHHHHHHHhhcCCC-CCCccchhchhHHHHHHHHHhcCCChhHHHHHHHHHHHHHccCcCCcc----ch-
Q psy10883 28 TKKKFPQIKEACEEGILKLRNVSS-NPQSQMHMVVNQILYPVVQGCETKDQKIIKMCISMMQRLITNQAIDQK----GA- 101 (435)
Q Consensus 28 ~krK~~~lk~a~e~al~~Lk~~~~-~~~~~l~~~~~~~l~Pf~lac~sk~~kl~~~AL~~lqKLi~~~~i~~~----~~- 101 (435)
.+-|.+.+++++..+++.+=...+ ....+ ..+.++..+.-+.+++++++-..++.+|.+++...--.++ .+
T Consensus 113 l~dkk~~V~~aa~~al~~i~~~~~~~~~~~---~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~ 189 (249)
T 2qk1_A 113 TKEKKPSVIEAIRKALLTICKYYDPLASSG---RNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLK 189 (249)
T ss_dssp GGCCCHHHHHHHHHHHHHHHHHSCTTCTTC---TTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHT
T ss_pred HcCCCHHHHHHHHHHHHHHHHHccccccCC---cHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHH
Confidence 355668899999999877665332 11111 1357888899999999999999999999999976432112 34
Q ss_pred HHHHHHHHHHhcCCh
Q psy10883 102 RYITDTLWMLMESGT 116 (435)
Q Consensus 102 ~~iv~~l~~~~e~~~ 116 (435)
+.++..+..+++++.
T Consensus 190 ~~iip~l~~~l~D~~ 204 (249)
T 2qk1_A 190 DEVVPIVIQIVNDTQ 204 (249)
T ss_dssp TTHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHhcCCC
Confidence 667777777776543
No 13
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=64.93 E-value=1.4e+02 Score=31.42 Aligned_cols=309 Identities=10% Similarity=0.057 Sum_probs=157.1
Q ss_pred ccChhHHHHHHHHHHHhhcCCCCCCccchhchhHHHHHHHHHhcCCChhHHHHHHHHHHHHHcc---CcCCccchHHHHH
Q psy10883 30 KKFPQIKEACEEGILKLRNVSSNPQSQMHMVVNQILYPVVQGCETKDQKIIKMCISMMQRLITN---QAIDQKGARYITD 106 (435)
Q Consensus 30 rK~~~lk~a~e~al~~Lk~~~~~~~~~l~~~~~~~l~Pf~lac~sk~~kl~~~AL~~lqKLi~~---~~i~~~~~~~iv~ 106 (435)
..+...|+++=.++..+-.... ...+....+.++..+.-.+...++.+-..++.++.++... ...+...++.++.
T Consensus 380 ~~~~~~r~~a~~~l~~i~~~~~--~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~ 457 (861)
T 2bpt_A 380 ADNWRNREAAVMAFGSIMDGPD--KVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQ 457 (861)
T ss_dssp CSSHHHHHHHHHHHHHTSSSSC--HHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHH
Confidence 4567788887666666543221 0111112245566666667778898988888888888765 2234556777887
Q ss_pred HHHHHhcCChh-hHHHHHHHHHHHhcCC----cccchHHHHHHHHHhhhcc--cCChHHHhhHHHHHHHHHHHHHhcccc
Q psy10883 107 TLWMLMESGTE-EVKILQSCTLLLTTNS----VVHGEILAKNLVLCFRLHF--AKDSTTINTAGATVRHLVSHVFERVLL 179 (435)
Q Consensus 107 ~l~~~~e~~~e-qLkILQ~Ll~lvts~~----~lhg~~L~~av~~C~~l~~--Sks~~v~~tA~ATL~Qiv~~VF~Rv~~ 179 (435)
.+..++....+ +.....++..++.... ..-...+-.++....++.. ..++.++..|..++.+++...=+.
T Consensus 458 ~l~~~l~~~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~--- 534 (861)
T 2bpt_A 458 ACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT--- 534 (861)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG---
T ss_pred HHHHHhccChHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchh---
Confidence 77666654433 5555555555554311 1111334444555555332 223567777777777776541000
Q ss_pred cccccccCCCCCCCCcccccCCCCCCCCCCCCcchhhH-HHHHHHHHHHhCCCCcchhh----cccchhhHhHHHHHHHH
Q psy10883 180 EDDQFREEDHKPRNINYEELKTPSNIPPKGIRPCAGDA-YLMFQDLVQLVNTDQPYWLI----GMTEMTRTFGLELLESI 254 (435)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DA-~lvF~dLC~Ls~~~~~~~l~----~~~~~sk~lsLeLIesi 254 (435)
..++.... =.+++.|-....-+. ..+. +....-+...++.+..+
T Consensus 535 ------------------------------~~~~~~~l~~~l~~~l~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~l~~l 583 (861)
T 2bpt_A 535 ------------------------------VAETSASISTFVMDKLGQTMSVDE-NQLTLEDAQSLQELQSNILTVLAAV 583 (861)
T ss_dssp ------------------------------GHHHHHHHHHHHHHHHHHHTTSCG-GGCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------hHHHHHHHHHHHHHHHHHHHhhhc-ccCChhhHHHHHHHHHHHHHHHHHH
Confidence 00111111 112222221110000 0000 00112345678888888
Q ss_pred HHcCCccccCChhHHHHHHHHHHHHHHHhcCccccccccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhHH
Q psy10883 255 LINYPSVFYKHPEFSFLLKERVCALVIKLFSPNIKYRNNALSSSGSSQQNAPLDKPYFPISVRLLRVVSILVQKYHVLLV 334 (435)
Q Consensus 255 L~~~~~~F~~~~~l~~llk~~Lcp~Llr~~s~n~~~~n~s~~~~ss~~~~~~~~~~~F~l~~r~~ri~~~Ll~~~~~~Lk 334 (435)
....+.-|..+ -+.+.+.++..+.. . ... .+-...+..+..+...+...+.
T Consensus 584 ~~~~~~~~~~~-------~~~l~~~l~~~l~~-------~--------------~~~-~v~~~~~~~l~~l~~~~~~~~~ 634 (861)
T 2bpt_A 584 IRKSPSSVEPV-------ADMLMGLFFRLLEK-------K--------------DSA-FIEDDVFYAISALAASLGKGFE 634 (861)
T ss_dssp HHHCGGGTGGG-------HHHHHHHHHHHHHS-------T--------------TGG-GTHHHHHHHHHHHHHHHGGGGH
T ss_pred HHHhhhhhHHH-------HHHHHHHHHHHHcc-------C--------------CCC-cHHHHHHHHHHHHHHHHhhhHH
Confidence 88887644322 13566666665521 0 010 2223355666777777777666
Q ss_pred HHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcC---------hHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhh
Q psy10883 335 TECEIFLSLIIKFLDPDKPVWQRSLALEVLHKLCVQ---------TELLKAFCQSYDLKDHTTHIFQDIVNSLATYVHS 404 (435)
Q Consensus 335 ~EiEvfls~l~~~Le~~~~~wqk~l~LEvl~~ic~d---------p~~l~~iy~nYDcd~~~~nIfe~lv~~Lsk~~q~ 404 (435)
.-++-++..++..|+.+.+ --|..+++++..++.. +.++..++.+.+-.....++-+..+.+++.++..
T Consensus 635 ~~l~~i~~~l~~~l~~~~~-~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~ 712 (861)
T 2bpt_A 635 KYLETFSPYLLKALNQVDS-PVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASN 712 (861)
T ss_dssp HHHHHHHHHHHHHHHCTTS-HHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccH-HHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHH
Confidence 6667777777777744333 2455566666655432 2333344444432212245555666666655553
No 14
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=64.92 E-value=60 Score=28.35 Aligned_cols=147 Identities=10% Similarity=0.083 Sum_probs=82.0
Q ss_pred HHHHHHHHhccChhHHHHHHHHHHHhhcCCCCCCccchhchhHHHHHHHHHhcCCChhHHHHHHHHHHHHHccCcCCccc
Q psy10883 21 LKNLSIETKKKFPQIKEACEEGILKLRNVSSNPQSQMHMVVNQILYPVVQGCETKDQKIIKMCISMMQRLITNQAIDQKG 100 (435)
Q Consensus 21 L~~L~~e~krK~~~lk~a~e~al~~Lk~~~~~~~~~l~~~~~~~l~Pf~lac~sk~~kl~~~AL~~lqKLi~~~~i~~~~ 100 (435)
+..|..-.+..+++++..+=+++..+-...+..... ......+.++.-..++.++.+...|+.+|..|...+--....
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKA--IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHH--HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHH--HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 444554445566888877777776665443210000 012357888888889999999999999999997652110000
Q ss_pred -h-HHHHHHHHHHhcCChh--hHHHHHHHHHHHhcCCcccchHH-HHHHHHHhhhcccCChHHHhhHHHHHHHH
Q psy10883 101 -A-RYITDTLWMLMESGTE--EVKILQSCTLLLTTNSVVHGEIL-AKNLVLCFRLHFAKDSTTINTAGATVRHL 169 (435)
Q Consensus 101 -~-~~iv~~l~~~~e~~~e--qLkILQ~Ll~lvts~~~lhg~~L-~~av~~C~~l~~Sks~~v~~tA~ATL~Qi 169 (435)
. ..++..+..++..+++ +...+.+|-.+...........+ ..++.....+..+.++.++..|..+|.++
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l 155 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 155 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 0 1234445445544332 55666666665532211110000 01344444444456677888888888877
No 15
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=63.37 E-value=1.5e+02 Score=31.20 Aligned_cols=114 Identities=7% Similarity=0.106 Sum_probs=66.2
Q ss_pred chhHHHHHHHHHhcCC--ChhHHHHHHHHHHHHHccC--cCCcc-chHHHHHHHHHHhcCChh--hHHHHHHHHHHHhcC
Q psy10883 60 VVNQILYPVVQGCETK--DQKIIKMCISMMQRLITNQ--AIDQK-GARYITDTLWMLMESGTE--EVKILQSCTLLLTTN 132 (435)
Q Consensus 60 ~~~~~l~Pf~lac~sk--~~kl~~~AL~~lqKLi~~~--~i~~~-~~~~iv~~l~~~~e~~~e--qLkILQ~Ll~lvts~ 132 (435)
....++..+.-+.... ++.+-..|+.|+..++.+- .+... ..+.++..+......... .-..++++..++..+
T Consensus 176 ~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~ 255 (861)
T 2bpt_A 176 SSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKY 255 (861)
T ss_dssp GHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 3456777777777666 7899999999999987541 11111 123467777665544333 445667776666653
Q ss_pred CcccchHHH-HHHHHHhhhcccCChHHHhhHHHHHHHHHHHH
Q psy10883 133 SVVHGEILA-KNLVLCFRLHFAKDSTTINTAGATVRHLVSHV 173 (435)
Q Consensus 133 ~~lhg~~L~-~av~~C~~l~~Sks~~v~~tA~ATL~Qiv~~V 173 (435)
...-...+. .++..+.......++.+...|-..+.+++...
T Consensus 256 ~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~ 297 (861)
T 2bpt_A 256 YTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEE 297 (861)
T ss_dssp GGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence 222223444 55555555444455556666655555555543
No 16
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=62.66 E-value=1.1e+02 Score=29.35 Aligned_cols=64 Identities=11% Similarity=-0.041 Sum_probs=41.1
Q ss_pred HHHHHHHHhccChhHHHHHHHHHHHhhcCCCCCCccchhchhHHHHHHHHHh--cCCChhHHHHHHHHHHHHHccC
Q psy10883 21 LKNLSIETKKKFPQIKEACEEGILKLRNVSSNPQSQMHMVVNQILYPVVQGC--ETKDQKIIKMCISMMQRLITNQ 94 (435)
Q Consensus 21 L~~L~~e~krK~~~lk~a~e~al~~Lk~~~~~~~~~l~~~~~~~l~Pf~lac--~sk~~kl~~~AL~~lqKLi~~~ 94 (435)
|..+....---++++|+.+++.+..++... ...++..+.... .+..+.+-..|.-.+.+++.+.
T Consensus 3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~----------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~ 68 (462)
T 1ibr_B 3 LITILEKTVSPDRLELEAAQKFLERAAVEN----------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSK 68 (462)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhhC----------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhcccc
Confidence 334444444557889999999998877521 123443332222 2346788899999999998764
No 17
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=61.74 E-value=1.3e+02 Score=29.96 Aligned_cols=107 Identities=9% Similarity=-0.044 Sum_probs=57.8
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHccCcCCccch--HHHHHHHHHHh-cCCh-h-hHHHHHHHHHHHhcCCcccc
Q psy10883 63 QILYPVVQGCETKDQKIIKMCISMMQRLITNQAIDQKGA--RYITDTLWMLM-ESGT-E-EVKILQSCTLLLTTNSVVHG 137 (435)
Q Consensus 63 ~~l~Pf~lac~sk~~kl~~~AL~~lqKLi~~~~i~~~~~--~~iv~~l~~~~-e~~~-e-qLkILQ~Ll~lvts~~~lhg 137 (435)
..+.+|+-...+.++.+...|+.+|.+|...+--....+ ..++..+..++ +... + +-..+.+|..+.........
T Consensus 160 g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~ 239 (528)
T 4b8j_A 160 GAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSF 239 (528)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCH
T ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcH
Confidence 477888888888999999999999999975321100000 01233333333 2222 2 45555555555544222222
Q ss_pred hHHHHHHHHHhhhcccCChHHHhhHHHHHHHH
Q psy10883 138 EILAKNLVLCFRLHFAKDSTTINTAGATVRHL 169 (435)
Q Consensus 138 ~~L~~av~~C~~l~~Sks~~v~~tA~ATL~Qi 169 (435)
.....++.....+..+.++.++..|..+|..+
T Consensus 240 ~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l 271 (528)
T 4b8j_A 240 EQTRPALPALARLIHSNDEEVLTDACWALSYL 271 (528)
T ss_dssp HHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 23334444444544445566666666666665
No 18
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=58.90 E-value=61 Score=28.66 Aligned_cols=137 Identities=12% Similarity=0.066 Sum_probs=75.5
Q ss_pred hccChhHHHHHHHHHHHhhcCCCCCCccchhchhHHHHHHHHHhcCCChhHHHHHHHHHHHHHccCcCCccch-----HH
Q psy10883 29 KKKFPQIKEACEEGILKLRNVSSNPQSQMHMVVNQILYPVVQGCETKDQKIIKMCISMMQRLITNQAIDQKGA-----RY 103 (435)
Q Consensus 29 krK~~~lk~a~e~al~~Lk~~~~~~~~~l~~~~~~~l~Pf~lac~sk~~kl~~~AL~~lqKLi~~~~i~~~~~-----~~ 103 (435)
+..++++++.+=.++..|-...+... ........+.++.-...+.++++...|+.+|..|...+ ++.. ..
T Consensus 106 ~~~~~~v~~~a~~~L~~l~~~~~~~~--~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~---~~~~~~~~~~~ 180 (252)
T 4db8_A 106 SSPNEQILQEALWALSNIASGGNEQI--QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG---NEQIQAVIDAG 180 (252)
T ss_dssp GCSCHHHHHHHHHHHHHHTTSCHHHH--HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC---HHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHHHhhcCCchHH--HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC---hHHHHHHHHCC
Confidence 44567777776666666543321100 00112357788888888999999999999999998654 1111 12
Q ss_pred HHHHHHHHhcCChh--hHHHHHHHHHHHhcCCcccchHH-HHHHHHHhhhcccCChHHHhhHHHHHHHHH
Q psy10883 104 ITDTLWMLMESGTE--EVKILQSCTLLLTTNSVVHGEIL-AKNLVLCFRLHFAKDSTTINTAGATVRHLV 170 (435)
Q Consensus 104 iv~~l~~~~e~~~e--qLkILQ~Ll~lvts~~~lhg~~L-~~av~~C~~l~~Sks~~v~~tA~ATL~Qiv 170 (435)
++..+..++..+++ +...+.+|-.+...........+ ..++....++..+.++.++.-|..+|.++.
T Consensus 181 ~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 181 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp CHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 23444444444332 66666666666543211100000 013333444445567778888877777653
No 19
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=58.10 E-value=94 Score=27.02 Aligned_cols=140 Identities=10% Similarity=0.085 Sum_probs=79.8
Q ss_pred hccChhHHHHHHHHHHHhhcCCCCCCccchhchhHHHHHHHHHhcCCChhHHHHHHHHHHHHHccCcCCccch--HHHHH
Q psy10883 29 KKKFPQIKEACEEGILKLRNVSSNPQSQMHMVVNQILYPVVQGCETKDQKIIKMCISMMQRLITNQAIDQKGA--RYITD 106 (435)
Q Consensus 29 krK~~~lk~a~e~al~~Lk~~~~~~~~~l~~~~~~~l~Pf~lac~sk~~kl~~~AL~~lqKLi~~~~i~~~~~--~~iv~ 106 (435)
+..++++++.+=.++..|-...+..... ......+.++.-...+.++++...|+.+|..|....--....+ ..++.
T Consensus 96 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~--~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 173 (252)
T 4hxt_A 96 TSTDSEVQKEAARALANIASGPDEAIKA--IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVE 173 (252)
T ss_dssp TCSSHHHHHHHHHHHHHHTTSCHHHHHH--HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCHHHHHH--HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHH
Confidence 3456677776666666655322110000 0123578888888899999999999999999976421000000 12455
Q ss_pred HHHHHhcCChh--hHHHHHHHHHHHhcCCcccchHH--HHHHHHHhhhcccCChHHHhhHHHHHHHHHH
Q psy10883 107 TLWMLMESGTE--EVKILQSCTLLLTTNSVVHGEIL--AKNLVLCFRLHFAKDSTTINTAGATVRHLVS 171 (435)
Q Consensus 107 ~l~~~~e~~~e--qLkILQ~Ll~lvts~~~lhg~~L--~~av~~C~~l~~Sks~~v~~tA~ATL~Qiv~ 171 (435)
.+..++..+.+ +...+.+|..+........ ..+ ..++....++..+.++.++..|..+|.++..
T Consensus 174 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~-~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 174 VLVKLLTSTDSEVQKEAARALANIASGPTSAI-KAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHH-HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHH-HHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 55555554433 6667777766665321100 001 1133444444456778889999999988854
No 20
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=55.22 E-value=78 Score=27.91 Aligned_cols=140 Identities=11% Similarity=0.064 Sum_probs=75.9
Q ss_pred hccChhHHHHHHHHHHHhhcCCCCCCccchhchhHHHHHHHHHhcCCChhHHHHHHHHHHHHHccCcCC-ccch-HHHHH
Q psy10883 29 KKKFPQIKEACEEGILKLRNVSSNPQSQMHMVVNQILYPVVQGCETKDQKIIKMCISMMQRLITNQAID-QKGA-RYITD 106 (435)
Q Consensus 29 krK~~~lk~a~e~al~~Lk~~~~~~~~~l~~~~~~~l~Pf~lac~sk~~kl~~~AL~~lqKLi~~~~i~-~~~~-~~iv~ 106 (435)
+..+++++..+=.+|..|-...+..... ......+.++.-..++.++.+...|+.+|..|....-.. .... ..++.
T Consensus 64 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~--i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 141 (252)
T 4db8_A 64 SSPNEQILQEALWALSNIASGGNEQIQA--VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALP 141 (252)
T ss_dssp GCSCHHHHHHHHHHHHHHTTSCHHHHHH--HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred cCCCHHHHHHHHHHHHHHhcCCHHHHHH--HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHH
Confidence 3445666666555555544321100000 011347788888889999999999999999996543221 0001 12445
Q ss_pred HHHHHhcCChh--hHHHHHHHHHHHhcCCcccchHH-HHHHHHHhhhcccCChHHHhhHHHHHHHHH
Q psy10883 107 TLWMLMESGTE--EVKILQSCTLLLTTNSVVHGEIL-AKNLVLCFRLHFAKDSTTINTAGATVRHLV 170 (435)
Q Consensus 107 ~l~~~~e~~~e--qLkILQ~Ll~lvts~~~lhg~~L-~~av~~C~~l~~Sks~~v~~tA~ATL~Qiv 170 (435)
.+..++..++. +...+.+|-.+............ ..++....++..+.++.++..|..+|..+.
T Consensus 142 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 208 (252)
T 4db8_A 142 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 208 (252)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHh
Confidence 55555554432 56666666655543211000000 123444555554567788888888888874
No 21
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=53.06 E-value=1.9e+02 Score=28.96 Aligned_cols=108 Identities=11% Similarity=0.026 Sum_probs=60.9
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHccCcCCccc--hHHHHHHHHHHhcCCh-h-hHHHHHHHHHHHhcC-Ccccc
Q psy10883 63 QILYPVVQGCETKDQKIIKMCISMMQRLITNQAIDQKG--ARYITDTLWMLMESGT-E-EVKILQSCTLLLTTN-SVVHG 137 (435)
Q Consensus 63 ~~l~Pf~lac~sk~~kl~~~AL~~lqKLi~~~~i~~~~--~~~iv~~l~~~~e~~~-e-qLkILQ~Ll~lvts~-~~lhg 137 (435)
..+.+|+-...+.++.+...|+.+|.+|...+--.... -..++..+..++..+. + +...+.+|-.+.... .....
T Consensus 173 g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~ 252 (530)
T 1wa5_B 173 DAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDW 252 (530)
T ss_dssp TCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcH
Confidence 45778888888889999999999999998653100000 0112333333333322 2 555666666665442 22222
Q ss_pred hHHHHHHHHHhhhcccCChHHHhhHHHHHHHHH
Q psy10883 138 EILAKNLVLCFRLHFAKDSTTINTAGATVRHLV 170 (435)
Q Consensus 138 ~~L~~av~~C~~l~~Sks~~v~~tA~ATL~Qiv 170 (435)
.....++....++..+.++.++..|..+|..+.
T Consensus 253 ~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~ 285 (530)
T 1wa5_B 253 SVVSQALPTLAKLIYSMDTETLVDACWAISYLS 285 (530)
T ss_dssp HHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 233344555555444556667777777777664
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=52.91 E-value=1.9e+02 Score=28.94 Aligned_cols=138 Identities=12% Similarity=0.036 Sum_probs=76.0
Q ss_pred ccChhHHHHHHHHHHHhhcCCCCCCccchhchhHHHHHHHHHhcCCChhHHHHHHHHHHHHHccC-c-CCccchHHHHHH
Q psy10883 30 KKFPQIKEACEEGILKLRNVSSNPQSQMHMVVNQILYPVVQGCETKDQKIIKMCISMMQRLITNQ-A-IDQKGARYITDT 107 (435)
Q Consensus 30 rK~~~lk~a~e~al~~Lk~~~~~~~~~l~~~~~~~l~Pf~lac~sk~~kl~~~AL~~lqKLi~~~-~-i~~~~~~~iv~~ 107 (435)
..++++|+.+=.++..|-...+.... ......++.|+.-.+.+.++.+...|+.+|..|..+. - ........++..
T Consensus 184 ~~~~~vr~~A~~aL~~l~~~~~~~~~--~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~ 261 (530)
T 1wa5_B 184 TGSVEVKEQAIWALGNVAGDSTDYRD--YVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPT 261 (530)
T ss_dssp HCCHHHHHHHHHHHHHHHTTCHHHHH--HHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCccchH--HHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHH
Confidence 35778888877777766543211000 0012357888888888889999999999999998764 1 222223345555
Q ss_pred HHHHhcCChh--hHHHHHHHHHHHhcCCcccchHH-HHHHHHHhhhcccCChHHHhhHHHHHHHH
Q psy10883 108 LWMLMESGTE--EVKILQSCTLLLTTNSVVHGEIL-AKNLVLCFRLHFAKDSTTINTAGATVRHL 169 (435)
Q Consensus 108 l~~~~e~~~e--qLkILQ~Ll~lvts~~~lhg~~L-~~av~~C~~l~~Sks~~v~~tA~ATL~Qi 169 (435)
|..++..+++ +...+.+|-.+...........+ ..++.....+..+.++.++..|-.+|..+
T Consensus 262 L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l 326 (530)
T 1wa5_B 262 LAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 326 (530)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHH
Confidence 5555544333 55556666555543211000000 02233333333345566666666666665
No 23
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=47.57 E-value=89 Score=28.73 Aligned_cols=54 Identities=17% Similarity=0.109 Sum_probs=36.6
Q ss_pred hHHHHHHHHHhcCCChhHHHHHHHHHHHHHcc-C--cCCcc-chHHHHHHHHHHhcCC
Q psy10883 62 NQILYPVVQGCETKDQKIIKMCISMMQRLITN-Q--AIDQK-GARYITDTLWMLMESG 115 (435)
Q Consensus 62 ~~~l~Pf~lac~sk~~kl~~~AL~~lqKLi~~-~--~i~~~-~~~~iv~~l~~~~e~~ 115 (435)
..++..+.-+.++||||+..-++.+|.+++.. | .++.. .++.++..+..+++..
T Consensus 138 ~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~ 195 (278)
T 4ffb_C 138 TQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHG 195 (278)
T ss_dssp HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCS
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCC
Confidence 46677777788999999999999999999864 2 22222 2344555555555543
No 24
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=47.03 E-value=1.7e+02 Score=27.63 Aligned_cols=102 Identities=10% Similarity=0.072 Sum_probs=73.7
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHcc--CcCCccchHHHHHHHHHHhcCChh--hHHHHHHHHHHHhcCCcccchH
Q psy10883 64 ILYPVVQGCETKDQKIIKMCISMMQRLITN--QAIDQKGARYITDTLWMLMESGTE--EVKILQSCTLLLTTNSVVHGEI 139 (435)
Q Consensus 64 ~l~Pf~lac~sk~~kl~~~AL~~lqKLi~~--~~i~~~~~~~iv~~l~~~~e~~~e--qLkILQ~Ll~lvts~~~lhg~~ 139 (435)
.+.-+.-=...++..+..-||..|.+++.. +..+...++.++|.+-...-..+| -++=++++-.++.. ..++.++
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~-vpL~~~~ 112 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKD-VPMGSKT 112 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTT-CCBCHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC-CCCCHHH
Confidence 333333333788999999999999999988 666666677777777554444555 67777777777765 3488899
Q ss_pred HHHHHHHHhhhcccCChHHHhhHHHHH
Q psy10883 140 LAKNLVLCFRLHFAKDSTTINTAGATV 166 (435)
Q Consensus 140 L~~av~~C~~l~~Sks~~v~~tA~ATL 166 (435)
..++..+--++..+++++..-=|+..+
T Consensus 113 y~Kl~~aL~dlik~~~~il~~eaae~L 139 (265)
T 3b2a_A 113 FLKAAKTLVSLLESPDDMMRIETIDVL 139 (265)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHh
Confidence 999999988877788877666555433
No 25
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=41.81 E-value=3.2e+02 Score=28.36 Aligned_cols=49 Identities=6% Similarity=0.055 Sum_probs=37.1
Q ss_pred hHHHHHHHHHhcCCChhHHHHHHHHHHHHHccCcCCccchHHHHHHHHHHhcCC
Q psy10883 62 NQILYPVVQGCETKDQKIIKMCISMMQRLITNQAIDQKGARYITDTLWMLMESG 115 (435)
Q Consensus 62 ~~~l~Pf~lac~sk~~kl~~~AL~~lqKLi~~~~i~~~~~~~iv~~l~~~~e~~ 115 (435)
......|.--+.++|+-+...||.+|.++.. ++..+.++..+..++...
T Consensus 106 ~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~-----~~~~~~l~~~l~~~L~~~ 154 (618)
T 1w63_A 106 LLMTNCIKNDLNHSTQFVQGLALCTLGCMGS-----SEMCRDLAGEVEKLLKTS 154 (618)
T ss_dssp HHHHHHHHHHHSCSSSHHHHHHHHHHHHHCC-----HHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHcCC
Confidence 3566778888899999999999999999863 344566677776766543
No 26
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=38.15 E-value=1.7e+02 Score=24.76 Aligned_cols=140 Identities=10% Similarity=0.064 Sum_probs=73.2
Q ss_pred hccChhHHHHHHHHHHHhhcCCCCCCccchhchhHHHHHHHHHhcCCChhHHHHHHHHHHHHHccCcCCccch--HHHHH
Q psy10883 29 KKKFPQIKEACEEGILKLRNVSSNPQSQMHMVVNQILYPVVQGCETKDQKIIKMCISMMQRLITNQAIDQKGA--RYITD 106 (435)
Q Consensus 29 krK~~~lk~a~e~al~~Lk~~~~~~~~~l~~~~~~~l~Pf~lac~sk~~kl~~~AL~~lqKLi~~~~i~~~~~--~~iv~ 106 (435)
+..+++++..+=.+|..|-...+..... ......+.+++-...+.++.+...|+.+|..|...+--....+ ..++.
T Consensus 22 ~s~~~~v~~~a~~~L~~l~~~~~~~~~~--i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~ 99 (210)
T 4db6_A 22 NSPDQQELQSALRKLSQIASGGNEQIQA--VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALP 99 (210)
T ss_dssp TCSCHHHHHHHHHHHHHHHTSCHHHHHH--HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHH
T ss_pred cCCCHHHHHHHHHHHHHHHcCCHHHHHH--HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHH
Confidence 3457788887777776665332110000 0123567788888888999999999999999975331100000 01233
Q ss_pred HHHHHhcCChh--hHHHHHHHHHHHhcCCcccchHH-HHHHHHHhhhcccCChHHHhhHHHHHHHHH
Q psy10883 107 TLWMLMESGTE--EVKILQSCTLLLTTNSVVHGEIL-AKNLVLCFRLHFAKDSTTINTAGATVRHLV 170 (435)
Q Consensus 107 ~l~~~~e~~~e--qLkILQ~Ll~lvts~~~lhg~~L-~~av~~C~~l~~Sks~~v~~tA~ATL~Qiv 170 (435)
.+..+++.++. +-....+|-.+...........+ ..++....++..+.++.++..|..+|.++.
T Consensus 100 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 100 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 166 (210)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 33334443332 55555555555432110000000 112333344444456777778887887774
No 27
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=38.01 E-value=1.8e+02 Score=27.58 Aligned_cols=105 Identities=11% Similarity=0.041 Sum_probs=60.4
Q ss_pred HHHHHHHH-HhcCCChhHHHHHHHHHHHHHccCc------CCccchHHHHHHHHHHhcC--Chh-hHHHHHHHHHHHhcC
Q psy10883 63 QILYPVVQ-GCETKDQKIIKMCISMMQRLITNQA------IDQKGARYITDTLWMLMES--GTE-EVKILQSCTLLLTTN 132 (435)
Q Consensus 63 ~~l~Pf~l-ac~sk~~kl~~~AL~~lqKLi~~~~------i~~~~~~~iv~~l~~~~e~--~~e-qLkILQ~Ll~lvts~ 132 (435)
..+.||+- -.++.++.+...|..+|..+...+- +...+++.+ ..++.. ..+ +-+.+.+|-.++...
T Consensus 81 G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~L----l~LL~~~~~~~v~~~A~~ALsnl~~~~ 156 (296)
T 1xqr_A 81 SGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL----LRLLDRDACDTVRVKALFAISCLVREQ 156 (296)
T ss_dssp THHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH----HHHHHHCSCHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHH----HHHHccCCCHHHHHHHHHHHHHHHcCC
Confidence 34567777 6788899999999999999986532 112223333 333332 222 556666666665542
Q ss_pred CcccchHHH--HHHHHHhhhcccCChHHHhhHHHHHHHHHHH
Q psy10883 133 SVVHGEILA--KNLVLCFRLHFAKDSTTINTAGATVRHLVSH 172 (435)
Q Consensus 133 ~~lhg~~L~--~av~~C~~l~~Sks~~v~~tA~ATL~Qiv~~ 172 (435)
...- +.+. ..+..+..+..+.++.++.-|..+|..+...
T Consensus 157 ~~~~-~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~ 197 (296)
T 1xqr_A 157 EAGL-LQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG 197 (296)
T ss_dssp HHHH-HHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred cHHH-HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 1100 0111 2344444444456778888888888887653
No 28
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=37.26 E-value=4.8e+02 Score=29.15 Aligned_cols=135 Identities=10% Similarity=0.084 Sum_probs=78.4
Q ss_pred hccChhHHHHHHHHHHHhhcCCCCCCccchhchhHHHHHHHHHhcCCChhHHHHHHHHHHHHHccCcCC-------ccch
Q psy10883 29 KKKFPQIKEACEEGILKLRNVSSNPQSQMHMVVNQILYPVVQGCETKDQKIIKMCISMMQRLITNQAID-------QKGA 101 (435)
Q Consensus 29 krK~~~lk~a~e~al~~Lk~~~~~~~~~l~~~~~~~l~Pf~lac~sk~~kl~~~AL~~lqKLi~~~~i~-------~~~~ 101 (435)
.-+++.+|+++=.++..+-..-+. ...+.++..+.-+....++.+-..|..++..+...-.-. ....
T Consensus 58 ~d~~~~vR~~A~~~L~~l~~~~~~------~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~ 131 (1230)
T 1u6g_C 58 EDKNGEVQNLAVKCLGPLVSKVKE------YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVC 131 (1230)
T ss_dssp TCSSHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHH
Confidence 357889999887777665432211 122456666666667778888888889998887642211 1135
Q ss_pred HHHHHHHHHHhcC-Ch-h-hHHHHHHHHHHHhc-CCcccchHHHHHHHHHhhhcccCChHHHhhHHHHHHHHH
Q psy10883 102 RYITDTLWMLMES-GT-E-EVKILQSCTLLLTT-NSVVHGEILAKNLVLCFRLHFAKDSTTINTAGATVRHLV 170 (435)
Q Consensus 102 ~~iv~~l~~~~e~-~~-e-qLkILQ~Ll~lvts-~~~lhg~~L~~av~~C~~l~~Sks~~v~~tA~ATL~Qiv 170 (435)
+.++..+..+++. .. + +-..+.++..++.. ...+.. .+-+++...+....+.++.++..|..++.+++
T Consensus 132 ~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~-~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~ 203 (1230)
T 1u6g_C 132 KKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN-FHPSILTCLLPQLTSPRLAVRKRTIIALGHLV 203 (1230)
T ss_dssp HHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT-THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 6777777777763 32 2 55566666665543 122221 23444444444444456677777776666543
No 29
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=36.91 E-value=4.9e+02 Score=29.10 Aligned_cols=146 Identities=12% Similarity=0.080 Sum_probs=87.8
Q ss_pred HHHHHHHHhccChhHHHHHHHHH-HHhhcCCCCCCccchhchhHHHHHHHHHhcCCChhHHHHHHHHHHHHHccCcCCcc
Q psy10883 21 LKNLSIETKKKFPQIKEACEEGI-LKLRNVSSNPQSQMHMVVNQILYPVVQGCETKDQKIIKMCISMMQRLITNQAIDQK 99 (435)
Q Consensus 21 L~~L~~e~krK~~~lk~a~e~al-~~Lk~~~~~~~~~l~~~~~~~l~Pf~lac~sk~~kl~~~AL~~lqKLi~~~~i~~~ 99 (435)
|..|.....--.+++|..+...+ ..++..... ..+ .....++.++.-+...+++++-..|+.+|..+.. .+++.
T Consensus 8 l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~-~~~--~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~--~~~~~ 82 (1230)
T 1u6g_C 8 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIK-LDD--DSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVS--KVKEY 82 (1230)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCS-CCT--THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHT--TSCHH
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHHHcccccC-CCh--hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH--hCCHH
Confidence 33444444445678888775555 444433211 100 1235778888888889999999999999999986 35666
Q ss_pred chHHHHHHHHHHhcCChh--hHHHHHHHHHHHhcC-Cc-----ccchHHHHHHHHHhhhcc-cCChHHHhhHHHHHHHHH
Q psy10883 100 GARYITDTLWMLMESGTE--EVKILQSCTLLLTTN-SV-----VHGEILAKNLVLCFRLHF-AKDSTTINTAGATVRHLV 170 (435)
Q Consensus 100 ~~~~iv~~l~~~~e~~~e--qLkILQ~Ll~lvts~-~~-----lhg~~L~~av~~C~~l~~-Sks~~v~~tA~ATL~Qiv 170 (435)
.++.|++.++..+....+ +....+++-.++... .. .-....-.++...+.... +.++.++..|-.++.+++
T Consensus 83 ~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~ 162 (1230)
T 1u6g_C 83 QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADML 162 (1230)
T ss_dssp HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 677888888777654433 444555555555432 11 111234455555555333 566777777777777765
Q ss_pred H
Q psy10883 171 S 171 (435)
Q Consensus 171 ~ 171 (435)
.
T Consensus 163 ~ 163 (1230)
T 1u6g_C 163 S 163 (1230)
T ss_dssp H
T ss_pred H
Confidence 3
No 30
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=36.81 E-value=4e+02 Score=28.02 Aligned_cols=110 Identities=8% Similarity=0.083 Sum_probs=65.1
Q ss_pred hhHHHHHHHHHhcCC--ChhHHHHHHHHHHHHHccCcCCcc----c-hHHHHHHHHHHhcCChh--hHHHHHHHHHHHhc
Q psy10883 61 VNQILYPVVQGCETK--DQKIIKMCISMMQRLITNQAIDQK----G-ARYITDTLWMLMESGTE--EVKILQSCTLLLTT 131 (435)
Q Consensus 61 ~~~~l~Pf~lac~sk--~~kl~~~AL~~lqKLi~~~~i~~~----~-~~~iv~~l~~~~e~~~e--qLkILQ~Ll~lvts 131 (435)
...++..+..+.... ++++-..|+.|+..++.+ ++.. . ...++..+....+...+ ...+++++..++..
T Consensus 170 ~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~--~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~ 247 (876)
T 1qgr_A 170 SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF--TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSL 247 (876)
T ss_dssp HHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGG--CHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 456777777777666 688999999999999865 2211 1 12356666555543333 55677888877776
Q ss_pred CCcccchHHH-HHHHHHhhhcccCChHHHhhHHHHHHHHHHH
Q psy10883 132 NSVVHGEILA-KNLVLCFRLHFAKDSTTINTAGATVRHLVSH 172 (435)
Q Consensus 132 ~~~lhg~~L~-~av~~C~~l~~Sks~~v~~tA~ATL~Qiv~~ 172 (435)
+...-...+. .++..+.......++.+...|-..+..++..
T Consensus 248 ~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~ 289 (876)
T 1qgr_A 248 YYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE 289 (876)
T ss_dssp SGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 4222223333 4555555543445556666665555555443
No 31
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=34.99 E-value=3e+02 Score=26.15 Aligned_cols=109 Identities=9% Similarity=0.019 Sum_probs=62.8
Q ss_pred hHHHHHHHHHhcCCChhHHHHHHHHHHHHHccCcCCccc-h-HHHHHHHHHHhcC-C-hh-hHHHHHHHHHHHhcC-Ccc
Q psy10883 62 NQILYPVVQGCETKDQKIIKMCISMMQRLITNQAIDQKG-A-RYITDTLWMLMES-G-TE-EVKILQSCTLLLTTN-SVV 135 (435)
Q Consensus 62 ~~~l~Pf~lac~sk~~kl~~~AL~~lqKLi~~~~i~~~~-~-~~iv~~l~~~~e~-~-~e-qLkILQ~Ll~lvts~-~~l 135 (435)
...+.+|.-.+.+.++.+...|+.+|.++...+.-.... + ..++..+..++.. . .+ +...+.+|-.+.... ...
T Consensus 106 ~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~ 185 (450)
T 2jdq_A 106 AGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP 185 (450)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 357788888888899999999999999998754110000 0 1233444444443 2 22 666677776666442 222
Q ss_pred cchHHHHHHHHHhhhcccCChHHHhhHHHHHHHHH
Q psy10883 136 HGEILAKNLVLCFRLHFAKDSTTINTAGATVRHLV 170 (435)
Q Consensus 136 hg~~L~~av~~C~~l~~Sks~~v~~tA~ATL~Qiv 170 (435)
.......++....++..+.++.++..|..+|..+.
T Consensus 186 ~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~ 220 (450)
T 2jdq_A 186 EFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLS 220 (450)
T ss_dssp CGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 22222334444444444556677777777777663
No 32
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=34.20 E-value=2.5e+02 Score=26.39 Aligned_cols=36 Identities=17% Similarity=0.311 Sum_probs=26.0
Q ss_pred hHHHHHHHHHhcCCChhHHHHHHHHHHHHHccCcCC
Q psy10883 62 NQILYPVVQGCETKDQKIIKMCISMMQRLITNQAID 97 (435)
Q Consensus 62 ~~~l~Pf~lac~sk~~kl~~~AL~~lqKLi~~~~i~ 97 (435)
..++..+.-+..+||+|.-.-+|+++..+|.....+
T Consensus 166 ~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~ 201 (266)
T 2of3_A 166 LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS 201 (266)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC
Confidence 456666777778888888888888888777654444
No 33
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=29.39 E-value=2.8e+02 Score=28.43 Aligned_cols=97 Identities=15% Similarity=0.164 Sum_probs=55.8
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHccCcCCccchHHHHHHHHHHhcCChh--hHHHHHHHHHHHhcC-CcccchHHHH
Q psy10883 66 YPVVQGCETKDQKIIKMCISMMQRLITNQAIDQKGARYITDTLWMLMESGTE--EVKILQSCTLLLTTN-SVVHGEILAK 142 (435)
Q Consensus 66 ~Pf~lac~sk~~kl~~~AL~~lqKLi~~~~i~~~~~~~iv~~l~~~~e~~~e--qLkILQ~Ll~lvts~-~~lhg~~L~~ 142 (435)
..|.-.+.+.|+.+...||.++.++. .++..+.++..+..+...... .-+-..++..+...+ ..+.++ .
T Consensus 89 n~l~kdL~~~n~~ir~~AL~~L~~i~-----~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~---~ 160 (591)
T 2vgl_B 89 NSFVKDCEDPNPLIRALAVRTMGCIR-----VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQ---G 160 (591)
T ss_dssp HHHGGGSSSSSHHHHHHHHHHHHTCC-----SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHH---H
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCC-----hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccc---c
Confidence 34444456778888888887776663 444556666667666654332 455555555555533 212211 2
Q ss_pred HHHHHhhhcccCChHHHhhHHHHHHHHH
Q psy10883 143 NLVLCFRLHFAKDSTTINTAGATVRHLV 170 (435)
Q Consensus 143 av~~C~~l~~Sks~~v~~tA~ATL~Qiv 170 (435)
++.....+...+++.|+..|...|.++.
T Consensus 161 ~~~~l~~lL~d~d~~V~~~A~~aL~~i~ 188 (591)
T 2vgl_B 161 FLDSLRDLIADSNPMVVANAVAALSEIS 188 (591)
T ss_dssp HHHHHHHTTSCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHH
Confidence 3344444445677788888877777763
No 34
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=29.14 E-value=2.2e+02 Score=29.81 Aligned_cols=74 Identities=14% Similarity=0.116 Sum_probs=53.0
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHhhcCCCCCCccchhchhHHHHHHHHHh--cCCChhHHH
Q psy10883 4 RQNPELSLKFLDSLQNDLKNLSIETKKKFPQIKEACEEGILKLRNVSSNPQSQMHMVVNQILYPVVQGC--ETKDQKIIK 81 (435)
Q Consensus 4 ~~~~~~~~~~~~~L~~dL~~L~~e~krK~~~lk~a~e~al~~Lk~~~~~~~~~l~~~~~~~l~Pf~lac--~sk~~kl~~ 81 (435)
..+|+.+.-....+.+|| .-.||-+|-.+=+++..++.. .-.+.++.|+.-++ ...++-+-.
T Consensus 103 ~~~~e~~~L~iN~l~kDl-------~~~n~~ir~lALr~L~~i~~~---------e~~~~l~~~v~~~l~~~d~~~~VRK 166 (621)
T 2vgl_A 103 NSNSELIRLINNAIKNDL-------ASRNPTFMGLALHCIANVGSR---------EMAEAFAGEIPKILVAGDTMDSVKQ 166 (621)
T ss_dssp CCCHHHHHHHHHHHHHHH-------HSCCHHHHHHHHHHHHHHCCH---------HHHHHHTTHHHHHHHCSSSCHHHHH
T ss_pred cCCcHHHHHHHHHHHHhc-------CCCCHHHHHHHHHHhhccCCH---------HHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 345665555555555555 457888988888888777542 13457777777787 788999989
Q ss_pred HHHHHHHHHHcc
Q psy10883 82 MCISMMQRLITN 93 (435)
Q Consensus 82 ~AL~~lqKLi~~ 93 (435)
.|.-|+.|+...
T Consensus 167 ~A~~al~kl~~~ 178 (621)
T 2vgl_A 167 SAALCLLRLYRT 178 (621)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998874
No 35
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=25.44 E-value=4.9e+02 Score=29.25 Aligned_cols=106 Identities=9% Similarity=0.132 Sum_probs=63.7
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHccCcCCccchHHHHHHHHHHhcCChh---hHHHHHHHHHHHhcCCcccchHH
Q psy10883 64 ILYPVVQGCETKDQKIIKMCISMMQRLITNQAIDQKGARYITDTLWMLMESGTE---EVKILQSCTLLLTTNSVVHGEIL 140 (435)
Q Consensus 64 ~l~Pf~lac~sk~~kl~~~AL~~lqKLi~~~~i~~~~~~~iv~~l~~~~e~~~e---qLkILQ~Ll~lvts~~~lhg~~L 140 (435)
++...+.++.-|.+.+-..|-..+.-++ +.+++.++..++..+-..+..+.. ..--|+++-.++......-+..|
T Consensus 96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~ 173 (986)
T 2iw3_A 96 LVPAICTNAGNKDKEIQSVASETLISIV--NAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRM 173 (986)
T ss_dssp THHHHHHHTTCSSHHHHHHHHHHHHHHH--HHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHH--HhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhc
Confidence 3455556667777766666655555553 346676777777777666654432 44456666666654433334555
Q ss_pred HHHHHHHhh-hcccCChHHHhhHHHHHHHHHHH
Q psy10883 141 AKNLVLCFR-LHFAKDSTTINTAGATVRHLVSH 172 (435)
Q Consensus 141 ~~av~~C~~-l~~Sks~~v~~tA~ATL~Qiv~~ 172 (435)
-.++-..-. ++..| +-|...|.+||+.+...
T Consensus 174 ~~~~p~~~~~~~d~k-~~v~~~~~~~~~~~~~~ 205 (986)
T 2iw3_A 174 PELIPVLSETMWDTK-KEVKAAATAAMTKATET 205 (986)
T ss_dssp HHHHHHHHHHTTCSS-HHHHHHHHHHHHHHGGG
T ss_pred cchhcchHhhcccCc-HHHHHHHHHHHHHHHhc
Confidence 555555555 55555 35788888888887654
No 36
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=24.54 E-value=75 Score=30.28 Aligned_cols=92 Identities=21% Similarity=0.337 Sum_probs=62.4
Q ss_pred CchHHHHH--HHHHHHHHHHH---HHHhHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHhhcChHHHHHHHHhcCCC
Q psy10883 310 PYFPISVR--LLRVVSILVQK---YHVLLVTECEIFLSLIIKFLDPDKPVWQRSLALEVLHKLCVQTELLKAFCQSYDLK 384 (435)
Q Consensus 310 ~~F~l~~r--~~ri~~~Ll~~---~~~~Lk~EiEvfls~l~~~Le~~~~~wqk~l~LEvl~~ic~dp~~l~~iy~nYDcd 384 (435)
..|+.. | ++.++..|++. .--.+-.+-| ++...++++|.++ .-.|.++.-++.+|..|..-+.-++.+||
T Consensus 113 r~fE~L-RLtsLGVIgaLvK~dd~eVi~fLL~tE-iiplCLrime~Gs-elSKtvAtfIlqKIL~dd~GL~YiC~t~e-- 187 (268)
T 2fv2_A 113 RPFEYL-RLTSLGVIGALVKTDEQEVINFLLTTE-IIPLCLRIMESGS-ELSKTVATFILQKILLDDTGLAYICQTYE-- 187 (268)
T ss_dssp HHHHHH-HHHHHHHHHHHGGGCCHHHHHHHHHTT-HHHHHHHHHHHSC-HHHHHHHHHHHHHHHHSHHHHHHHTSSHH--
T ss_pred Ccchhh-hhhHHHHHHHHhccCcHHHHHHHHhhh-HHHHHHHHHhhcc-HHHHHHHHHHHHHHhccchhHHHHHccHH--
Confidence 456642 4 67777777643 0000011223 2456678887664 56788899999999999999988886665
Q ss_pred CCCchHHHHHHHHHHHHHhhhhcCCCC
Q psy10883 385 DHTTHIFQDIVNSLATYVHSVFLNSSP 411 (435)
Q Consensus 385 ~~~~nIfe~lv~~Lsk~~q~~~~~~~~ 411 (435)
=|..+.+.|++.+.+....|++
T Consensus 188 -----RF~av~~vL~~mV~~l~~~ps~ 209 (268)
T 2fv2_A 188 -----RFSHVAMILGKMVLQLSKEPSA 209 (268)
T ss_dssp -----HHHHHHHHHHHHHHHTTTSCCH
T ss_pred -----HHHHHHHHHHHHHHHHhcCCCh
Confidence 5888888888888887766654
No 37
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=24.05 E-value=3.3e+02 Score=23.05 Aligned_cols=57 Identities=9% Similarity=0.198 Sum_probs=37.6
Q ss_pred HHHHHHHHhccChhHHHHHHHHHHHhhcCCCCCCccchhchhHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q psy10883 21 LKNLSIETKKKFPQIKEACEEGILKLRNVSSNPQSQMHMVVNQILYPVVQGCETKDQKIIKMCISMMQRL 90 (435)
Q Consensus 21 L~~L~~e~krK~~~lk~a~e~al~~Lk~~~~~~~~~l~~~~~~~l~Pf~lac~sk~~kl~~~AL~~lqKL 90 (435)
+..|..-.+..++.+|.++=.++..+... ..+.++.-+.+..++.+-..|+..|.++
T Consensus 52 ~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-------------~~~~~L~~~l~~~~~~vr~~a~~aL~~~ 108 (211)
T 3ltm_A 52 VEPLIKALKDEDAWVRRAAADALGQIGDE-------------RAVEPLIKALKDEDGWVRQSAAVALGQI 108 (211)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHCCG-------------GGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhhCCH-------------HHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 33344334556888998888888776531 3445556666777777777777777776
No 38
>2oxl_A Hypothetical protein YMGB; bacterial protein, biofilm, acid resistance, DNA binding Pro dimer, gene regulation; HET: BOG; 1.80A {Escherichia coli}
Probab=22.65 E-value=1.6e+02 Score=21.86 Aligned_cols=36 Identities=19% Similarity=0.359 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHh
Q psy10883 332 LLVTECEIFLSLIIKFLDPDKPVWQRSLALEVLHKL 367 (435)
Q Consensus 332 ~Lk~EiEvfls~l~~~Le~~~~~wqk~l~LEvl~~i 367 (435)
++..|.|++=.++..++.++.+.-.|.+++..++++
T Consensus 2 ~~~~E~e~Lg~iv~eil~~g~~vsnKaIi~~LI~rL 37 (64)
T 2oxl_A 2 LLEEESAVLGQAVTNLMLSGDNVNNKNIILSLIHSL 37 (64)
T ss_dssp TTHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Confidence 467889998878889999999999999999999999
No 39
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=21.68 E-value=5.1e+02 Score=24.44 Aligned_cols=286 Identities=10% Similarity=0.063 Sum_probs=139.1
Q ss_pred ChhHHHHHHHHHHHhhcCCCCCCccchhchhHHHHHHHHHhcCC--ChhHHHHHHHHHHHHHccC--cCCccc-hHHHHH
Q psy10883 32 FPQIKEACEEGILKLRNVSSNPQSQMHMVVNQILYPVVQGCETK--DQKIIKMCISMMQRLITNQ--AIDQKG-ARYITD 106 (435)
Q Consensus 32 ~~~lk~a~e~al~~Lk~~~~~~~~~l~~~~~~~l~Pf~lac~sk--~~kl~~~AL~~lqKLi~~~--~i~~~~-~~~iv~ 106 (435)
++.+|+++=.++..+-..-.. ..+....+.++..|..+.... ++.+-..|+.++..++.+- ..+... .+.++.
T Consensus 143 ~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ 220 (462)
T 1ibr_B 143 TEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQ 220 (462)
T ss_dssp CHHHHHHHHHHHHHHHHHSCG--GGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCc--hhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 556666655555443321100 011123456777787777777 7899999999999987531 111111 123456
Q ss_pred HHHHHhcCChh--hHHHHHHHHHHHhcCCcccchHHH-HHHHHHhhhcccCChHHHhhHHHHHHHHHHHHHhcccccccc
Q psy10883 107 TLWMLMESGTE--EVKILQSCTLLLTTNSVVHGEILA-KNLVLCFRLHFAKDSTTINTAGATVRHLVSHVFERVLLEDDQ 183 (435)
Q Consensus 107 ~l~~~~e~~~e--qLkILQ~Ll~lvts~~~lhg~~L~-~av~~C~~l~~Sks~~v~~tA~ATL~Qiv~~VF~Rv~~~~~~ 183 (435)
.+.......++ ...+++++..+...+...-++.+. .++..+.......++.+...|-..+..+....++.....+.
T Consensus 221 ~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~- 299 (462)
T 1ibr_B 221 VVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASE- 299 (462)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhccc-
Confidence 66555443333 556778887777664211111222 33444444333456666666666666666554433211111
Q ss_pred cccCCCCCCCCcccccCCCCCCCCCCCCcchhh-HHHHHHHHHHHhCCCCcchhhcccchhhHhHHHHHHHHHHcCCccc
Q psy10883 184 FREEDHKPRNINYEELKTPSNIPPKGIRPCAGD-AYLMFQDLVQLVNTDQPYWLIGMTEMTRTFGLELLESILINYPSVF 262 (435)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-A~lvF~dLC~Ls~~~~~~~l~~~~~~sk~lsLeLIesiL~~~~~~F 262 (435)
..... . .. . .....+.+. .-.++..|+........+ ..+.....+.-+...+..+-...+.
T Consensus 300 -~~~~~---~-------~~-~---~~~~~~~~~~~~~l~p~l~~~l~~~d~d-~~~~~~~~r~~a~~~L~~l~~~~~~-- 361 (462)
T 1ibr_B 300 -AAEQG---R-------PP-E---HTSKFYAKGALQYLVPILTQTLTKQDEN-DDDDDWNPCKAAGVCLMLLATCCED-- 361 (462)
T ss_dssp -TTCSS---S-------CS-S---CCCCCHHHHHHHHHHHHHHHHTTCCCSS-CCTTCCSHHHHHHHHHHHHHHHTTT--
T ss_pred -ccccC---C-------Cc-c---chhHHHHHHHhhhccHHHHHHHHhcccc-cccccchHHHHHHHHHHHHHHhccH--
Confidence 00000 0 00 0 001111111 122344444443221110 0011112566777888777776553
Q ss_pred cCChhHHHHHHHHHHHHHHHhcCccccccccccCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHH-HhHHHHHHHHH
Q psy10883 263 YKHPEFSFLLKERVCALVIKLFSPNIKYRNNALSSSGSSQQNAPLDKPYFPISVRLLRVVSILVQKYH-VLLVTECEIFL 341 (435)
Q Consensus 263 ~~~~~l~~llk~~Lcp~Llr~~s~n~~~~n~s~~~~ss~~~~~~~~~~~F~l~~r~~ri~~~Ll~~~~-~~Lk~EiEvfl 341 (435)
.+-..+.|.+...+. .+...+-.-.+..+..+..... ..++..++-++
T Consensus 362 --------~~~~~~~~~l~~~l~-----------------------~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~ 410 (462)
T 1ibr_B 362 --------DIVPHVLPFIKEHIK-----------------------NPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAM 410 (462)
T ss_dssp --------THHHHHHHHHHHHTT-----------------------CSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHH
T ss_pred --------HHHHHHHHHHHHHhc-----------------------CCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 122356666666552 1233332224444444443222 22334445567
Q ss_pred HHHHHhhCCCCChHHHHHHHHHHHHhhcC
Q psy10883 342 SLIIKFLDPDKPVWQRSLALEVLHKLCVQ 370 (435)
Q Consensus 342 s~l~~~Le~~~~~wqk~l~LEvl~~ic~d 370 (435)
..+++.|... ...-|..+..++.+++..
T Consensus 411 ~~l~~~l~d~-~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 411 PTLIELMKDP-SVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp HHHHHGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC-CHHHHHHHHHHHHHHHHh
Confidence 7777777543 367788888888888743
Done!