RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10883
(435 letters)
>gnl|CDD|221768 pfam12783, Sec7_N, Guanine nucleotide exchange factor in Golgi
transport N-terminal. The full-length Sec7 functions
proximally in the secretory pathway as a protein binding
scaffold for the coat protein complexes COPII-COPI. The
COPII-COPI-protein switch is necessary for maturation of
the vesicular-tubular cluster, VTC, intermediate
compartments for Golgi compartment biogenesis. This
N-terminal domain however does not appear to be binding
either of the COP or the ARF.
Length = 166
Score = 98.0 bits (245), Expect = 3e-24
Identities = 60/183 (32%), Positives = 94/183 (51%), Gaps = 30/183 (16%)
Query: 216 DAYLMFQDLVQLVN----TDQPYWLIGMTEMTRTFGLELLESILINYPSVFYKH-PEFSF 270
DA+L+F+DL +L ++ + E ++ LEL+ESIL N+ VF PE
Sbjct: 7 DAFLVFRDLCKLSMKPLDEEEKPDFLSHEERSKLLSLELIESILENHGDVFLSSPPELLD 66
Query: 271 LLKERVCALVIKLFSPNIKYRNNALSSSGSSQQNAPLDKPYFPISVRLLRVVSILVQKYH 330
L+++ +C +++ N SSS FP+ VR LR+ +L+ K+
Sbjct: 67 LIRQYLCPSLLR----------NLSSSS-------------FPVFVRSLRIFLLLLSKFR 103
Query: 331 VLLVTECEIFLSLII-KFLDPDK-PVWQRSLALEVLHKLCVQTELLKAFCQSYDLKDHTT 388
L E E+FLSL+I + L+ D P WQ+ L LEVL +LC +LL +YD + +
Sbjct: 104 SHLKLEIEVFLSLLILRILESDNSPFWQKELVLEVLRRLCRDPQLLVEIYLNYDCDEDSK 163
Query: 389 HIF 391
+IF
Sbjct: 164 NIF 166
>gnl|CDD|215560 PLN03076, PLN03076, ARF guanine nucleotide exchange factor
(ARF-GEF); Provisional.
Length = 1780
Score = 39.8 bits (93), Expect = 0.003
Identities = 49/190 (25%), Positives = 88/190 (46%), Gaps = 32/190 (16%)
Query: 216 DAYLMFQDLVQLVNTDQPYWLIGMTEMTR--TFGLELLESILINYPSVFYKHPEFSFLLK 273
DA+L+F+ L +L P + ++ R LELL+ +L N +VF F +K
Sbjct: 347 DAFLVFRALCKLSMKTPPKEALADPQLMRGKILALELLKILLENAGAVFRTSDRFLGAIK 406
Query: 274 ERVCALVIKLFSPNIKYRNNALSSSGSSQQNAPLDKPYFPISVRLLRVVSILVQKYHVLL 333
+ +C ++K +S SS F +S + +S LV ++ L
Sbjct: 407 QYLCLSLLK--------------NSASSLMII------FQLSCSIF--IS-LVSRFRAGL 443
Query: 334 VTECEIFLSLII-KFLD----PDKPVWQRSLALEVLHKLCVQTELLKAFCQSYDLKDHTT 388
E +F +I+ + L+ P+ Q+ + L L KLCV +++L +YD +++
Sbjct: 444 KAEIGVFFPMIVLRVLENVAQPN--FQQKMIVLRFLDKLCVDSQILVDIFINYDCDVNSS 501
Query: 389 HIFQDIVNSL 398
+IF+ +VN L
Sbjct: 502 NIFERMVNGL 511
Score = 34.0 bits (78), Expect = 0.20
Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 24/133 (18%)
Query: 64 ILYPVVQGCETKDQKIIKMCISMMQRLITNQAIDQKGARYITDT--------LWMLMES- 114
IL P++ C T KI+ + +Q+LI + + R D L L+ES
Sbjct: 87 ILSPLINACGTGSAKIVDPALDCIQKLIAHGYL-----RGEADPSGGPEALLLAKLIESV 141
Query: 115 ------GTEEVKILQSCTLLLTTNSV---VHGEILAKNLVLCFRLHF-AKDSTTINTAGA 164
G E +++L TLL S +HG+ L + + C+ ++ +K+ TA A
Sbjct: 142 CKCHDLGDEGIELLVLKTLLSAVTSTSLRIHGDCLLQAVRTCYDIYLGSKNVVNQTTAKA 201
Query: 165 TVRHLVSHVFERV 177
++ ++ VF R+
Sbjct: 202 SLIQMLVIVFRRM 214
>gnl|CDD|225645 COG3103, COG3103, SH3 domain protein [Signal transduction
mechanisms].
Length = 205
Score = 33.5 bits (77), Expect = 0.13
Identities = 11/49 (22%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 77 QKIIKMCISMMQRLITNQAIDQKGARYITDTLWMLMESG-TEEVKILQS 124
K+I + ++ + A ++ RY++D L + SG ++ +I+ S
Sbjct: 2 NKLIFILLTSLLLSAAAPATAEE-TRYVSDKLNTNVRSGPGDQYRIVGS 49
>gnl|CDD|223068 PHA03384, PHA03384, early DNA-binding protein E2A; Provisional.
Length = 445
Score = 32.4 bits (74), Expect = 0.51
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 16/56 (28%)
Query: 348 LDPDKPVWQRSLALEVLHKLCV--------------QTELLKAFCQSYDLKDHTTH 389
DP + WQ+ A+E++ KL Q E K CQ++ ++H
Sbjct: 95 SDPLESKWQK--AMEIVAKLMEPLKVDTKGFTLLPDQGECFKKICQTWLNEEHRGI 148
>gnl|CDD|235237 PRK04169, PRK04169, geranylgeranylglyceryl phosphate synthase-like
protein; Reviewed.
Length = 232
Score = 30.2 bits (69), Expect = 1.9
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
Query: 202 PSNIPPKGIRPCAGDAYLMFQDLVQLVNTDQPYWLIGM-TEMTRTFGLELLESI 254
P N +GI P A DAYL ++N+ PYW+IG E LE I
Sbjct: 67 PGN--IEGISPGA-DAYLF---PS-VLNSRNPYWIIGAHVEAAPIIKKGGLEVI 113
>gnl|CDD|215096 PLN00192, PLN00192, aldehyde oxidase.
Length = 1344
Score = 30.8 bits (70), Expect = 1.9
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 143 NLVLCFRLHFAKDSTTI-NTAGATVRHLVSHVFERVLLED 181
NLV+ R F D TI AG+TV + E++ LE+
Sbjct: 348 NLVMAQRKQFPSDIATILLAAGSTVNIQNASKREKLTLEE 387
>gnl|CDD|233564 TIGR01768, GGGP-family, geranylgeranylglyceryl phosphate synthase
family protein. This model represents a family of
sequences including geranylgeranylglyceryl phosphate
synthase which catalyzes the first committed step in the
synthesis of ether-linked membrane lipids in archaea.
The clade of bacterial sequences may have the same
function or a closely related function. This model
supercedes TIGR00265, which has been retired.
Length = 223
Score = 29.8 bits (67), Expect = 2.1
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 202 PSNIPPKGIRPCAGDAYLMFQDLVQLVNTDQPYWLIGM-TEMTRTFGLELLESILINY 258
PSN P + A DA ++N+D PYW+IG E F E I Y
Sbjct: 62 PSN--PTNVSRDA-DALF----FPSVLNSDDPYWIIGAQIEAAPKFKKIGEEIIPEGY 112
>gnl|CDD|224560 COG1646, COG1646, Predicted phosphate-binding enzymes, TIM-barrel
fold [General function prediction only].
Length = 240
Score = 29.6 bits (67), Expect = 2.7
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 13/71 (18%)
Query: 196 YEELKTPSNIP-------PKGIRPCAGDAYLMFQDLVQLVNTDQPYWLIGM-TEMTRTFG 247
E +K +++P P GI P A DA ++N+D PYW++G E + G
Sbjct: 62 VEAIKERTDLPVILFPGSPSGISPYA-DAVF----FPSVLNSDNPYWIVGAQVEGAKLVG 116
Query: 248 LELLESILINY 258
LE I Y
Sbjct: 117 KLGLEVIPEGY 127
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 29.4 bits (66), Expect = 5.0
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 13/79 (16%)
Query: 295 LSSSGSSQQNAPLDKPYFPISVRLLRVVS------ILVQKYHVLLVTECEIFLSLI---- 344
LSS+GS + P P P + LLR + + Q LL C + L ++
Sbjct: 214 LSSTGSVVRPGP---PPTPKRLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYF 270
Query: 345 IKFLDPDKPVWQRSLALEV 363
+KFLD D W R L L +
Sbjct: 271 VKFLDADNATWGRGLGLVL 289
>gnl|CDD|218304 pfam04876, Tenui_NCP, Tenuivirus major non-capsid protein. This
protein of unknown function accumulates in large amounts
in tenuivirus infected cells. It is found in all forms
of the inclusion bodies that are formed after infection.
Length = 175
Score = 28.3 bits (63), Expect = 5.5
Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 7 PELSLKFLDSL---QNDLKNLSIETKKKFPQIKEACEEGILK--LRNVSSNPQSQMHMVV 61
PE FL+ L ++ N I+ F ++ + I K L++ + + Q+ ++
Sbjct: 78 PEFCHSFLEHLLGGEDSTTNSLIDIGVFFVILQPKLGDWITKNYLKHPNRMSKDQIKTLL 137
Query: 62 NQIL 65
QI+
Sbjct: 138 TQII 141
>gnl|CDD|224968 COG2057, AtoA, Acyl CoA:acetate/3-ketoacid CoA transferase, beta
subunit [Lipid metabolism].
Length = 225
Score = 27.6 bits (62), Expect = 9.8
Identities = 10/17 (58%), Positives = 11/17 (64%)
Query: 120 KILQSCTLLLTTNSVVH 136
KIL+ CTL LT N V
Sbjct: 156 KILKECTLPLTGNGCVD 172
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.135 0.396
Gapped
Lambda K H
0.267 0.0790 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 21,330,415
Number of extensions: 2033837
Number of successful extensions: 1578
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1570
Number of HSP's successfully gapped: 20
Length of query: 435
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 335
Effective length of database: 6,502,202
Effective search space: 2178237670
Effective search space used: 2178237670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.8 bits)