RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10883
(435 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.9 bits (139), Expect = 4e-09
Identities = 63/444 (14%), Positives = 130/444 (29%), Gaps = 116/444 (26%)
Query: 1 MGARQNPELSLKFLDSLQNDLKNLSIETKKKFPQIKEACEEGILKLRNVSSNPQSQMHMV 60
+ +PE L+ L L + IK +LR + + + ++
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 61 VNQILYPVVQGCETKDQKIIKM----CISMMQRLITNQAIDQKGARYITDTLWMLMESGT 116
+L V ++ K C + L+T + +TD L + T
Sbjct: 249 ---VLLNV------QNAKAWNAFNLSC----KILLTTRFKQ------VTDF---LSAATT 286
Query: 117 EEVKILQSCTLLLTTNSVVHGEILAKNL-VLCFRL-HFAKDST--TINTAGATVRHLVSH 172
+ + L +L K L L + ++ ++R ++
Sbjct: 287 THISLDHHSMTLTPDEVK---SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 173 VFERVLLEDDQFREEDHKPRNINYEELKTP-----SNIPPKGIRPCAGDAYLMFQDLVQL 227
D + +++N ++L T + + P R F L
Sbjct: 344 W--------DNW-------KHVNCDKLTTIIESSLNVLEPAEYRKM-------FDRLSVF 381
Query: 228 -VNTDQP------YWLIGMTEMTRTFGLELLESILIN---YPSVFYKHPEFSFLLK---E 274
+ P W + +L + L+ S LK E
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-SIYLELKVKLE 440
Query: 275 RVCAL---VIKLFSPNIKYRNNALSSSGSSQQNAPLDKPYFPISVRLLRVVSILVQKYHV 331
AL ++ ++ + ++ L LD+ YF S + +H+
Sbjct: 441 NEYALHRSIVDHYNIPKTFDSDDLIPP-------YLDQ-YF---------YSHIG--HHL 481
Query: 332 LLVTECEIFLSLIIKFLDPDKPVWQRSLALEVLHKLCVQTELLKAFCQSY----DLKDHT 387
+ E + FLD + LE K+ + A LK +
Sbjct: 482 KNIEHPERMTLFRMVFLDFR---F-----LEQ--KIRHDSTAWNASGSILNTLQQLKFYK 531
Query: 388 THI------FQDIVNSLATYVHSV 405
+I ++ +VN++ ++ +
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKI 555
Score = 41.4 bits (96), Expect = 6e-04
Identities = 43/259 (16%), Positives = 87/259 (33%), Gaps = 67/259 (25%)
Query: 172 HVFERVLLEDDQFREEDHKPRNI-NYEELKTPSNIPPKGIRPCAGDAYLMFQDLVQLVNT 230
VFE +++ ++ P++I + EE+ +F L+
Sbjct: 23 SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG-----TLRLFWTLL----- 72
Query: 231 DQPYWLIGMTEMTRTFGLELLESILINYPSVFYKHPEFSFLL-----KERVCALVIKLFS 285
+ EM + F E+L INY FL+ ++R +++ +++
Sbjct: 73 SKQ------EEMVQKFVEEVLR---INYK----------FLMSPIKTEQRQPSMMTRMY- 112
Query: 286 PNIKYRNNALSSSGS-SQQNAPLDKPYFPISVRLLR------VV---------SILV--- 326
I+ R+ + + ++ N +PY + LL V+ + +
Sbjct: 113 --IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 327 -QKYHVLLVTECEIFLSLIIKFLDPDKPVWQRSLALEVLHKLCVQTELLKAFCQSYDLKD 385
Y V + +IF + + + P LE+L KL Q + + D
Sbjct: 171 CLSYKVQCKMDFKIFW---LNLKNCNSP----ETVLEMLQKLLYQ--IDPNWTSRSDHSS 221
Query: 386 HTTHIFQDIVNSLATYVHS 404
+ I L + S
Sbjct: 222 NIKLRIHSIQAELRRLLKS 240
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.4 bits (125), Expect = 2e-07
Identities = 86/465 (18%), Positives = 134/465 (28%), Gaps = 129/465 (27%)
Query: 8 ELSLKFLDS--LQ-NDL----KNLSIETKKKFPQIKE-------ACEEGILKLRNVSSNP 53
L L ++ L+ ND+ L E + KE A I+ R
Sbjct: 85 NLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITAR---IMAKRPFDKKS 141
Query: 54 QSQMHMVVNQ---ILYPVV--QGC------ETKD---------QKIIKMCISMMQRLITN 93
S + V + L + QG E +D +IK + LI
Sbjct: 142 NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRT 201
Query: 94 QAIDQKGARYITDTL----WMLMESGTEEVKILQSCTL---LLTTNSVVHGEILAKNLVL 146
+ T L W+ S T + L S + L+ + H + AK L
Sbjct: 202 ---TLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGF 258
Query: 147 C---FRLHFAKDSTTINTAGATVRHLVSHVFERVLLEDDQFREEDHKPRN----INYEEL 199
R + T ++ G LV+ V + F K I
Sbjct: 259 TPGELRSYLK--GATGHSQG-----LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY 311
Query: 200 KT--PSNIPPKGIRPCA----GDAYLMF----------QDLVQLVNTDQPYWLIGMTEMT 243
+ +++PP + G M QD V N+ P
Sbjct: 312 EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP---------- 361
Query: 244 RTFGLELLESILINYPSVFYKHPEFSFLLKERVCA-LVIKLFSPNIKYRNNALSSSGSSQ 302
+E+ S L+N V + L+ N+ R + SG Q
Sbjct: 362 AGKQVEI--S-LVNGAKNL-------------VVSGPPQSLYGLNLTLRKAK-APSGLDQ 404
Query: 303 QNAPLD--KPYFPISVRLLRVVSILVQKYHVLLVTECEIFLSLIIKFLDPDKPVWQRS-L 359
P K F S R L V S +H L+ LI K L + + +
Sbjct: 405 SRIPFSERKLKF--SNRFLPVAS----PFHSHLLVPAS---DLINKDLVKNNVSFNAKDI 455
Query: 360 ALEVLHKLCVQTELLKAFCQSYDLKDHTTHIFQDIVNSLATY-VH 403
+ V T DL+ + I + IV+ + V
Sbjct: 456 QIPVYD-----TF------DGSDLRVLSGSISERIVDCIIRLPVK 489
Score = 52.4 bits (125), Expect = 2e-07
Identities = 87/515 (16%), Positives = 156/515 (30%), Gaps = 188/515 (36%)
Query: 7 PELSLKFLDSLQNDLKNLSIETKKKFPQIKEAC----EEGILKLRNVSSNPQSQMHMVVN 62
EL KFL + + ++ +F Q+ C E L+ ++ H +
Sbjct: 58 AELVGKFLGYVSSLVEP---SKVGQFDQVLNLCLTEFENCYLEGNDI--------HALAA 106
Query: 63 QILYPVVQGCETKDQKIIK---MCISMMQRLITN-------QAIDQKGAR-Y-------I 104
++L K +++IK M +R +A+ + A+
Sbjct: 107 KLL-QENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGN 165
Query: 105 TDTLWMLMESGTEEVKILQSCTLLLTTNSVVHGEILAKNLVLCFRLHFAKDSTTINTAGA 164
TD + EE L+ L T + D I +
Sbjct: 166 TDDYF-------EE---LRD---LYQT----------------YH-VLVGD--LIKFSAE 193
Query: 165 TVRHLVSHVFERVLLEDDQFREEDHKPRNINYEE-LKTPSNIPPKGIRPCAGDAYLM--- 220
T+ L+ + E + +N E L+ PSN P YL+
Sbjct: 194 TLSELIRTTLD----------AEKVFTQGLNILEWLENPSNTPD--------KDYLLSIP 235
Query: 221 ----FQDLVQLVNTDQPY----WLIGMT--EMTRTF-GL-----ELLESILI----NYPS 260
++QL + Y L+G T E+ G L+ ++ I ++ S
Sbjct: 236 ISCPLIGVIQLAH----YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWES 291
Query: 261 VFYKHPEFSFLLKERVCALVIKLFS---------PNIKYRNNALSSSGSSQQNAP---LD 308
F+ +++ A+ + LF PN + L S + + P L
Sbjct: 292 -FFV------SVRK---AITV-LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML- 339
Query: 309 KPYFPISVRLLRVVSI--LVQKYHVLLVTECEIFLSLIIKFLDPDK------PVWQRSL- 359
S+ L + V K + L ++ +SL+ P +SL
Sbjct: 340 ------SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG---AKNLVVSGPP---QSLY 387
Query: 360 ALEV-LHKLCVQTELLKA---FCQ------------------SYDLKDHTTHIFQDIVN- 396
L + L K + L ++ F + L + I +D+V
Sbjct: 388 GLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHL-LVPASDLINKDLVKN 446
Query: 397 -------SLATYVHSVFLNSSPSLSSSSCGENQVP 424
+ V+ F S + S S E V
Sbjct: 447 NVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVD 481
Score = 41.2 bits (96), Expect = 6e-04
Identities = 48/272 (17%), Positives = 78/272 (28%), Gaps = 97/272 (35%)
Query: 124 SCTLLLTTNSVVHGEIL----AKNLV-----------------LCFR-LHFAKDSTTINT 161
LL+ T S L K L L + L + +
Sbjct: 17 EHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSK 76
Query: 162 AGAT---VRHLVSHVFERVLLEDD-------QFREEDHKP----RNI--NYEELKTPSNI 205
G + ++ FE LE + + +E+ + + NY + +
Sbjct: 77 VGQFDQVLNLCLTE-FENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKR 135
Query: 206 PPKGIRPCA-------GDAYLM------------FQDLVQLVNTDQPYWLIG--MTEMTR 244
P A G+A L+ F++L L T L+G +
Sbjct: 136 PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHV--LVGDLIKFSAE 193
Query: 245 TFGLELLESILINYPSVFYKHPEFSFLLKERVCALVIKLFSPNIKYRNNALSSSGSSQQN 304
T L L ++ VF + ++ L +P+ N
Sbjct: 194 T--LSELIRTTLDAEKVF-----------TQGLNILEWLENPS----------------N 224
Query: 305 APLDKPYF---PISVRLLRVVSILVQKYHVLL 333
P DK Y PIS L+ V+ L Y V
Sbjct: 225 TP-DKDYLLSIPISCPLIGVIQ-LAH-YVVTA 253
Score = 35.4 bits (81), Expect = 0.044
Identities = 43/264 (16%), Positives = 72/264 (27%), Gaps = 104/264 (39%)
Query: 215 GDAYLM----F--QDLVQLVNTDQPYWLIGMTEMTRTFGLELLESILINYPSVFYKHPEF 268
D + F D+V + P +T FG E + I NY ++ ++
Sbjct: 1649 ADNHFKDTYGFSILDIVI----NNP------VNLTIHFGGEKGKRIRENYSAMIFETIVD 1698
Query: 269 SFLLKERVCALVIKLFSPNIKYRNNALSSSGSSQQNAPLDKPYF--PISVRLLRVVSILV 326
L E++ K N +S + L F P L ++
Sbjct: 1699 GKLKTEKI-----------FKEINEHSTSYTFRSEKGLLSATQFTQP---ALT-LMEKAA 1743
Query: 327 QKYHVL----LVTECEIF--LSL-----------IIKFLDPDKPVWQRSLALE------- 362
+ L L+ F SL ++ + V+ R + ++
Sbjct: 1744 --FEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDE 1801
Query: 363 ---------------VLHKLCVQTELLKAFCQSYDLKDHTTHIFQDIVNSLATYVHSVFL 407
V E L+ + + T + + IVN Y
Sbjct: 1802 LGRSNYGMIAINPGRVAASFS--QEALQYVVER--VGKRTGWLVE-IVN----Y------ 1846
Query: 408 NSSPSLSSSSCGENQVPRCSQYAA 431
N ENQ QY A
Sbjct: 1847 NV----------ENQ-----QYVA 1855
Score = 35.0 bits (80), Expect = 0.064
Identities = 31/211 (14%), Positives = 58/211 (27%), Gaps = 89/211 (42%)
Query: 251 LESILINYPSVFYKHPEFSFL-----------LKERVCALVIKLFSPNIKYRNNALSSSG 299
+ +++ S+ E L L+E+ F+ +
Sbjct: 6 TRPLTLSHGSL-----EHVLLVPTASFFIASQLQEQ--------FNKIL---------PE 43
Query: 300 SSQQNAPLDKPYFPISVRLLRVVSILVQKYHVLLVTECEIFLSLIIKFLDPDKPVWQRSL 359
++ A D+P P LV K FL + ++P +
Sbjct: 44 PTEGFAADDEPTTPAE---------LVGK-----------FLGYVSSLVEPS----KVGQ 79
Query: 360 ALEVLHKLCVQTELLKAFCQSYDLKD---HT--THIFQDIVNSLA-------TYVHSVFL 407
+VL+ L F Y L+ H + Q+ +L Y+ + +
Sbjct: 80 FDQVLNL------CLTEFENCY-LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIM 132
Query: 408 ------NSSPS--LSSSSCGENQVPRCSQYA 430
S S + G Q+ A
Sbjct: 133 AKRPFDKKSNSALFRAVGEGNAQL-----VA 158
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.396
Gapped
Lambda K H
0.267 0.0513 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,237,708
Number of extensions: 356662
Number of successful extensions: 663
Number of sequences better than 10.0: 1
Number of HSP's gapped: 656
Number of HSP's successfully gapped: 13
Length of query: 435
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 339
Effective length of database: 4,021,377
Effective search space: 1363246803
Effective search space used: 1363246803
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.0 bits)