RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10883
         (435 letters)



>d2doaa1 a.4.5.81 (A:8-98) RNA polymerase II elongation factor ELL
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 91

 Score = 25.5 bits (56), Expect = 4.6
 Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 7/53 (13%)

Query: 354 VWQRSLALEVLHKLCVQ----TELLKAFCQ-SYDLKDHTTHIFQDIVNSLATY 401
           V QR     VLH L ++     ELL    +      D        ++  +A  
Sbjct: 1   VSQRPFRDRVLHLLALRPYRKAELLLRLQKDGLTQADKDA--LDGLLQQVANM 51


>d1hx8a1 a.7.8.2 (A:167-299) AP180 (Lap) {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 133

 Score = 26.2 bits (58), Expect = 5.0
 Identities = 13/98 (13%), Positives = 41/98 (41%), Gaps = 13/98 (13%)

Query: 314 ISVRLLRVVSILVQKYHVLLVTECEIFLSLIIKFLDPDKPVWQRSLALEVLHKLCVQTEL 373
           I++  + +   L++ +        +  ++L+ K+ D +K       AL++  K  V+ + 
Sbjct: 41  INMSFMLLFRDLIRLFACY----NDGIINLLEKYFDMNKK--HARDALDLYKKFLVRMDR 94

Query: 374 LKAF---CQSYDLKDH----TTHIFQDIVNSLATYVHS 404
           +  F    ++  +        T     ++++L  ++ +
Sbjct: 95  VGEFLKVAENVGIDKGDIPDLTKAPSSLLDALEQHLAT 132


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.396 

Gapped
Lambda     K      H
   0.267   0.0500    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,524,992
Number of extensions: 68725
Number of successful extensions: 152
Number of sequences better than 10.0: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 7
Length of query: 435
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 347
Effective length of database: 1,199,356
Effective search space: 416176532
Effective search space used: 416176532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.1 bits)