BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10886
         (320 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3C9R|A Chain A, Aathil Complexed With Atp
 pdb|3C9R|B Chain B, Aathil Complexed With Atp
 pdb|3C9S|A Chain A, Aathil Complexed With Amppcp
 pdb|3C9S|B Chain B, Aathil Complexed With Amppcp
 pdb|3C9T|A Chain A, Aathil Complexed With Amppcp And Tmp
 pdb|3C9T|B Chain B, Aathil Complexed With Amppcp And Tmp
 pdb|3C9U|A Chain A, Aathil Complexed With Adp And Tpp
 pdb|3C9U|B Chain B, Aathil Complexed With Adp And Tpp
          Length = 342

 Score = 30.0 bits (66), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 16/92 (17%)

Query: 99  HSRPTAN----RILSLIANLPIGIPFAITFKYYHLEHHRYQGDEKLDTDIPTYMEARLFC 154
           H RPTA     + +   AN  + I   +     HL        E L   +P   E +++C
Sbjct: 221 HLRPTARIDYVKHIQKYANASMDISDGLVADANHLAQRSGVKIEILSEKLPLSNELKMYC 280

Query: 155 TTFGKFIWVCLQPFFYA------FRPIFTYPK 180
             +GK       P  YA      ++ +FT+PK
Sbjct: 281 EKYGK------NPIEYALFGGEDYQLLFTHPK 306


>pdb|2VNC|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Trex From
           Sulfolobus Solfataricus
 pdb|2VNC|B Chain B, Crystal Structure Of Glycogen Debranching Enzyme Trex From
           Sulfolobus Solfataricus
 pdb|2VR5|A Chain A, Crystal Structure Of Trex From Sulfolobus Solfataricus In
           Complex With Acarbose Intermediate And Glucose
 pdb|2VR5|B Chain B, Crystal Structure Of Trex From Sulfolobus Solfataricus In
           Complex With Acarbose Intermediate And Glucose
 pdb|2VUY|A Chain A, Crystal Structure Of Glycogen Debranching Exzyme Trex From
           Sulfolobus Solfatarius
 pdb|2VUY|B Chain B, Crystal Structure Of Glycogen Debranching Exzyme Trex From
           Sulfolobus Solfatarius
          Length = 718

 Score = 28.5 bits (62), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 207 RMLSYMLLGSLMAMGLHPVAGHFVSEHYMFKKGYETYSYYGPLNWIT 253
           +M+SY+    +  + L PV  HF+ + ++  KG   Y  Y P+N+ +
Sbjct: 206 QMISYLKDLGITTVELMPVF-HFIDQRFLTDKGLTNYWGYDPINFFS 251


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.142    0.460 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,681,668
Number of Sequences: 62578
Number of extensions: 459814
Number of successful extensions: 1278
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1274
Number of HSP's gapped (non-prelim): 7
length of query: 320
length of database: 14,973,337
effective HSP length: 99
effective length of query: 221
effective length of database: 8,778,115
effective search space: 1939963415
effective search space used: 1939963415
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)