Query psy10886
Match_columns 320
No_of_seqs 170 out of 1604
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 20:58:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10886.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10886hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2987|consensus 100.0 7.3E-79 1.6E-83 519.0 25.0 320 1-320 1-320 (324)
2 PLN02579 sphingolipid delta-4 100.0 4.2E-68 9.1E-73 487.6 28.7 315 3-319 7-321 (323)
3 cd03508 Delta4-sphingolipid-FA 100.0 8.6E-59 1.9E-63 421.1 25.3 288 26-315 1-289 (289)
4 cd03511 Rhizopine-oxygenase-li 100.0 5.7E-35 1.2E-39 267.2 19.1 259 31-297 4-284 (285)
5 PLN02598 omega-6 fatty acid de 100.0 7E-33 1.5E-37 262.6 19.7 270 9-286 66-368 (421)
6 PLN03198 delta6-acyl-lipid des 100.0 1.2E-31 2.5E-36 261.3 24.1 280 16-301 179-508 (526)
7 cd03509 DesA_FADS-like Fatty a 100.0 1.8E-31 3.9E-36 242.9 21.4 212 82-305 39-281 (288)
8 PLN03199 delta6-acyl-lipid des 100.0 2.3E-31 5E-36 258.6 23.0 267 26-299 114-462 (485)
9 COG3239 DesA Fatty acid desatu 100.0 1.5E-31 3.2E-36 249.3 16.5 268 24-298 19-312 (343)
10 cd03514 CrtR_beta-carotene-hyd 100.0 1.7E-31 3.6E-36 232.6 15.0 180 65-285 20-203 (207)
11 PLN02498 omega-3 fatty acid de 100.0 1.7E-30 3.6E-35 245.0 22.4 252 22-283 103-396 (450)
12 PLN02505 omega-6 fatty acid de 100.0 2E-30 4.3E-35 242.9 22.7 255 21-284 31-340 (381)
13 cd03510 Rhizobitoxine-FADS-lik 100.0 1.5E-30 3.3E-35 220.7 9.9 152 62-280 14-175 (175)
14 cd03513 CrtW_beta-carotene-ket 100.0 1.6E-28 3.6E-33 215.0 14.3 188 63-276 25-224 (225)
15 cd03506 Delta6-FADS-like The D 100.0 4E-28 8.6E-33 211.5 13.8 183 71-286 2-201 (204)
16 PF00487 FA_desaturase: Fatty 99.9 4.4E-28 9.5E-33 215.7 9.0 219 66-290 3-254 (257)
17 cd03507 Delta12-FADS-like The 99.9 1.1E-26 2.3E-31 204.7 16.6 80 63-146 27-106 (222)
18 KOG4232|consensus 99.9 5.4E-24 1.2E-28 195.9 17.5 107 33-146 110-217 (430)
19 cd03512 Alkane-hydroxylase Alk 99.9 4.3E-21 9.3E-26 176.9 15.6 202 63-278 66-285 (314)
20 cd01060 Membrane-FADS-like The 99.7 1.5E-17 3.4E-22 132.5 6.5 60 83-145 14-73 (122)
21 PF08557 Lipid_DES: Sphingolip 99.3 8.6E-13 1.9E-17 81.2 3.6 38 5-42 1-38 (39)
22 PLN02220 delta-9 acyl-lipid de 99.0 9.3E-09 2E-13 93.8 14.6 60 83-146 71-131 (299)
23 COG1398 OLE1 Fatty-acid desatu 99.0 3.6E-09 7.7E-14 93.1 10.1 179 85-274 63-254 (289)
24 KOG1600|consensus 98.2 5.7E-06 1.2E-10 74.7 8.3 79 62-146 62-142 (321)
25 cd03505 Delta9-FADS-like The D 98.1 2E-05 4.4E-10 66.7 9.2 55 88-146 23-78 (178)
26 PF13829 DUF4191: Domain of un 71.1 24 0.00051 31.1 7.7 57 21-80 8-66 (224)
27 COG1398 OLE1 Fatty-acid desatu 33.8 73 0.0016 28.9 4.5 15 125-139 236-250 (289)
28 PF12427 DUF3665: Branched-cha 33.1 48 0.001 17.8 2.0 19 9-27 3-22 (23)
29 cd03513 CrtW_beta-carotene-ket 30.3 1E+02 0.0022 27.2 4.8 12 127-138 206-217 (225)
30 PF06738 DUF1212: Protein of u 28.7 2.9E+02 0.0062 23.2 7.4 51 29-80 87-138 (193)
31 cd03509 DesA_FADS-like Fatty a 24.1 2.4E+02 0.0053 25.7 6.4 16 124-139 228-243 (288)
32 COG5282 Uncharacterized conser 20.3 73 0.0016 29.3 2.1 40 82-122 168-207 (359)
No 1
>KOG2987|consensus
Probab=100.00 E-value=7.3e-79 Score=519.05 Aligned_cols=320 Identities=68% Similarity=1.241 Sum_probs=311.4
Q ss_pred CCCCCCCCcceecCCCCCChhHhHHHHhhChHHhhhhcCCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Q psy10886 1 MGAKVSRTDFEWTYTEEPHASRRKEILKKYPEIKKLFGSDPKFKYIVLSMVLVQFVSMYFLRNVSWPVLLTVAYCFGGVI 80 (320)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~a~~l~~~~ 80 (320)
||-.+||+||+|+++||||++||++|++++||+|+||++||...|.+++++.+|+.++++..+.+|.+++..|.++|++.
T Consensus 1 Mg~~~sr~dF~W~yTeePHasRR~eIL~kyPeIk~Lfg~dp~~kwvv~~~Vi~Q~~~~~ll~dl~W~~il~~AYf~gg~i 80 (324)
T KOG2987|consen 1 MGQSVSRTDFEWVYTEEPHASRRKEILAKYPEIKSLFGPDPNLKWVVLGMVILQILAAYLLRDLDWKWILFIAYFFGGFI 80 (324)
T ss_pred CCCCccccceeEEecCCcchhHHHHHHHhChHHHHHhCCCcchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhhhhh
Confidence 89999999999999999999999999999999999999999999999999999999999988889998888899999999
Q ss_pred HHHHHHHHhhcccccccCCCcchHHHHHHHHhccccccccchhhhHHhHHhhhhcCCCCCCCCcchhhHHHHhhhhhHHH
Q psy10886 81 NHSLMLSIHEMAHNLAFGHSRPTANRILSLIANLPIGIPFAITFKYYHLEHHRYQGDEKLDTDIPTYMEARLFCTTFGKF 160 (320)
Q Consensus 81 ~~~~~~l~HE~~H~~~f~s~~~~~N~~~G~l~~~~~~~~~~~~~r~~H~~HH~~~n~~~~DpD~~~~~~~~~~~~~~~~~ 160 (320)
++.+....||.+|+..|+++|+..|+++|.++++|+|+|+++++|..|+.||++.+.++-|-|+|+..|.+++.+.++++
T Consensus 81 Nhsl~LAIHeiSHN~aFg~~rpl~NR~~g~fANLPigvP~siSFkkYHleHHry~G~DgiDtDvPT~~Ea~~f~t~~~K~ 160 (324)
T KOG2987|consen 81 NHSLTLAIHEISHNLAFGTNRPLYNRIFGFFANLPIGVPMSISFKKYHLEHHRYLGVDGIDTDVPTRFEAWLFDTAFGKL 160 (324)
T ss_pred chhHHHHHHHhhhhhhcccCchHHHHHHHHhhcCcccCceeeeehhhhhHHhHhcCCccccCCCCchhheehhhhhhHHH
Confidence 99999999999999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCccHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccceeeeccccccCCCc
Q psy10886 161 IWVCLQPFFYAFRPIFTYPKAPTALELFNTVVQISFDVFICYFLGGRMLSYMLLGSLMAMGLHPVAGHFVSEHYMFKKGY 240 (320)
Q Consensus 161 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~~ll~~~~~~~~~~~~~~~~~eH~~~~~~~ 240 (320)
+|..+|+++|++||++.+||+...+|.++.++|+.++++++..+||+.+.|++++.++++.+||+.|+|++||+.+.+++
T Consensus 161 iw~~lQpfFY~fRPl~i~pkp~t~me~iN~iiQ~~fd~li~~f~G~ksl~Yll~~s~lg~gLHP~aGHFisEHY~f~k~~ 240 (324)
T KOG2987|consen 161 IWVTLQPFFYAFRPLFIYPKPPTDMEFINTIIQLSFDLLIVYFFGWKSLAYLLASSFLGMGLHPIAGHFISEHYMFKKGQ 240 (324)
T ss_pred HHHHHHHHHHhhhhheecCCCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCcccchhhHhhhhhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccchhhhccccccccccCCCCCCCCChHHHHHHHHHhhcCCCCcccHHHHHHHhhhCCCCCccccccccCCCCC
Q psy10886 241 ETYSYYGPLNWITFNVGYHNEHHDFPAVPGSRLPMVKKIASEYYDNLPQHHSWSAVLYDFVMDPDIGPYARMKRKHRGLD 320 (320)
Q Consensus 241 ~t~s~~~~~~~l~~n~~yH~eHHlfP~vP~~~Lp~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (320)
+|+|++|++||+++|.+||+|||.||.||..+||+++++++|||+++|.++||.+++++||+||.+|||+|++|+.+++|
T Consensus 241 ETySYYGplN~~tfNvGYH~EHHDFP~Ipg~~Lp~Vr~iApEyYd~lp~~~Sw~~vlydfi~d~~vgpy~RvKRk~~~~~ 320 (324)
T KOG2987|consen 241 ETYSYYGPLNLLTFNVGYHVEHHDFPYIPGSRLPKVREIAPEYYDNLPQHKSWVGVLYDFIMDPTVGPYARVKRKYRKAD 320 (324)
T ss_pred cceeeecceeeEEEecccccccccCCCCCccccHHHHHhhHHHhcCchhhchHHHHHHHHHcCCCcChHHHHhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988876
No 2
>PLN02579 sphingolipid delta-4 desaturase
Probab=100.00 E-value=4.2e-68 Score=487.56 Aligned_cols=315 Identities=57% Similarity=1.037 Sum_probs=285.2
Q ss_pred CCCCCCcceecCCCCCChhHhHHHHhhChHHhhhhcCCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Q psy10886 3 AKVSRTDFEWTYTEEPHASRRKEILKKYPEIKKLFGSDPKFKYIVLSMVLVQFVSMYFLRNVSWPVLLTVAYCFGGVINH 82 (320)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~a~~l~~~~~~ 82 (320)
..++|+||+|+.+||+|.+|||+|++++||+++++.+||...+..++++++++.+++++...+|+..+++++++|+++++
T Consensus 7 ~~~~~~~f~w~~~~~~h~~rr~~il~~ype~~~l~~~d~~~~~k~~~~v~~~~~~~~l~~~~~w~~~l~~a~~~~g~~~~ 86 (323)
T PLN02579 7 EGVMATDFFWSYTDEPHASRRREILSKYPQIKELFGPDPWAFPKIAAVVLLQLCTATLLHDAGWPKILLVAYFFGGFLNH 86 (323)
T ss_pred ccCCccceeECCchhhHHHHHHHHHHhchHhhcccCCCchHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 35688999999999999999999999999999999999998887777777777666666578898777767888888888
Q ss_pred HHHHHHhhcccccccCCCcchHHHHHHHHhccccccccchhhhHHhHHhhhhcCCCCCCCCcchhhHHHHhhhhhHHHHH
Q psy10886 83 SLMLSIHEMAHNLAFGHSRPTANRILSLIANLPIGIPFAITFKYYHLEHHRYQGDEKLDTDIPTYMEARLFCTTFGKFIW 162 (320)
Q Consensus 83 ~~~~l~HE~~H~~~f~s~~~~~N~~~G~l~~~~~~~~~~~~~r~~H~~HH~~~n~~~~DpD~~~~~~~~~~~~~~~~~~~ 162 (320)
++++++|||+|+++|++ +++|+++|.++++++|+|++.|||..|+.||+++|++++|||+++..+.++++.+..++.|
T Consensus 87 ~lf~~~HD~~Hg~~f~~--~~~N~~lg~~~~l~~g~~~~~~~~~~H~~HH~~~n~~~~D~Di~t~~E~~l~~~~~~~~~~ 164 (323)
T PLN02579 87 NLFLAIHELSHNLAFKT--PVYNRWLGIFANLPIGIPMSVTFQKYHLEHHRFQGVDGIDMDIPSQGEARLVRNTLSKIVW 164 (323)
T ss_pred HHHHHHHHhhHhhhcCC--HHHHHHHHHHHHHhhcCCHhHHHHHHHHHHccCCCCCCCCCCCCchhhHHHHHHHHHHHHH
Confidence 99999999999999998 5699999999999999999756999999999999999999999998888888888888899
Q ss_pred HHHHHHHHHhhccccCCCCccHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccceeeeccccccCCCccc
Q psy10886 163 VCLQPFFYAFRPIFTYPKAPTALELFNTVVQISFDVFICYFLGGRMLSYMLLGSLMAMGLHPVAGHFVSEHYMFKKGYET 242 (320)
Q Consensus 163 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~~ll~~~~~~~~~~~~~~~~~eH~~~~~~~~t 242 (320)
..++++++.+||...++++..++++.++++++++.++++..+||.+++|++++.++++.++|+.+++++||+...++++|
T Consensus 165 ~~~~~~f~~~rp~~~~~~~~~~~~~in~~~~~~~~~~l~~~~G~~~llyl~~~~~~~~~lhp~~g~~~~ehy~~~~~~et 244 (323)
T PLN02579 165 VFLQLFFYALRPLFVNPKPPGLWEFINLLTQIAFDAALVYFAGWKSLAYLILSTFLGGGLHPMAGHFISEHYVFNPGQET 244 (323)
T ss_pred HHHHHHHHHhhHHhhccCCchHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHhcccccccceeeccceeccCCCCc
Confidence 98999999989887666666677778888888887777888899999999999999988999999999999998888899
Q ss_pred ccccccchhhhccccccccccCCCCCCCCChHHHHHHHHHhhcCCCCcccHHHHHHHhhhCCCCCccccccccCCCC
Q psy10886 243 YSYYGPLNWITFNVGYHNEHHDFPAVPGSRLPMVKKIASEYYDNLPQHHSWSAVLYDFVMDPDIGPYARMKRKHRGL 319 (320)
Q Consensus 243 ~s~~~~~~~l~~n~~yH~eHHlfP~vP~~~Lp~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (320)
+|+++++||+++|+|||.|||+||+|||++||+++++.+|+||++|+++||..++++||+||.+||++||+|+.|+-
T Consensus 245 ysyyg~ln~l~~NigYH~eHH~fP~IP~~~Lp~l~~~~pe~y~~l~~~~sw~~~~~~fi~~~~~~~~~r~~r~~~~~ 321 (323)
T PLN02579 245 YSYYGPLNLLTWNVGYHNEHHDFPRIPGSKLHKVKEIAPEYYDNLKSYKSWSQVIYMYIMDPTIGPFSRMKRKPPKK 321 (323)
T ss_pred eeehhHHHHHhhcccccHhhcCCCCCchhhHHHHHHhCHHHHhCCCCcCcHHHHHHHHHcCCCCCcceeeeeccccC
Confidence 99889999999999999999999999999999999999999999999999999999999999999999999999863
No 3
>cd03508 Delta4-sphingolipid-FADS-like The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins. These proteins are found in various eukaryotes including vertebrates, higher plants, and fungi. Studies show that MLD is localized to the endoplasmic reticulum. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for
Probab=100.00 E-value=8.6e-59 Score=421.11 Aligned_cols=288 Identities=65% Similarity=1.206 Sum_probs=255.5
Q ss_pred HHhhChHHhhhhcCCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcchHH
Q psy10886 26 ILKKYPEIKKLFGSDPKFKYIVLSMVLVQFVSMYFLRNVSWPVLLTVAYCFGGVINHSLMLSIHEMAHNLAFGHSRPTAN 105 (320)
Q Consensus 26 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~a~~l~~~~~~~~~~l~HE~~H~~~f~s~~~~~N 105 (320)
|+|++||+++|+++||...+..++.+++++++++++.+.+|+..+++++++++..++++++++|||+|+++|+++ ++|
T Consensus 1 i~~~~pei~~L~~~~~~~~~~~~~~v~~~~~~~~~l~~~sw~~~ll~a~vi~~~~~~~l~~l~Hd~~H~~~f~~~--~~N 78 (289)
T cd03508 1 ILAKYPEIKKLFGPDPLTKWVVLGVVLLQIITAYLLRDSSWWKILLVAYFFGGTINHSLFLAIHEISHNLAFGKP--LWN 78 (289)
T ss_pred CcccchHHHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCCh--HHH
Confidence 578999999999999999999988888888877777677888777788888888878999999999999999984 599
Q ss_pred HHHHHHhccccccccchhhhHHhHHhhhhcCCCCCCCCcchhhHHHHhhhhhHHHHHHHHHHHHHHhhccccCCCCccHH
Q psy10886 106 RILSLIANLPIGIPFAITFKYYHLEHHRYQGDEKLDTDIPTYMEARLFCTTFGKFIWVCLQPFFYAFRPIFTYPKAPTAL 185 (320)
Q Consensus 106 ~~~G~l~~~~~~~~~~~~~r~~H~~HH~~~n~~~~DpD~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 185 (320)
+++|.++++++|.|++.+||..|+.||+++|++++|||+++..+.++++.+.++..|..++++++..|+...++++..++
T Consensus 79 ~~~g~~~~~~~g~p~~~~~r~~H~~HH~~~n~~~~DpDi~~~~~~~l~~~~~g~~~~~~~~~~~~~~rp~~~~~~~~~~~ 158 (289)
T cd03508 79 RLFGIFANLPIGVPYSISFKKYHLEHHRYLGEDGLDTDIPTEFEGKLFSTVLGKAIWVTLQPFFYALRPLFVRPKPPTRL 158 (289)
T ss_pred HHHHHHHHHHhcCChhhHHHHHHHHhccCCCCCCCCCCcchHHHHHHHhCchHHHHHHHHHHHHHHhcccccCCCcchhH
Confidence 99999999999999983489999999999999999999999888888887888888887888887778766555555667
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccceeeeccccccC-CCcccccccccchhhhccccccccccC
Q psy10886 186 ELFNTVVQISFDVFICYFLGGRMLSYMLLGSLMAMGLHPVAGHFVSEHYMFK-KGYETYSYYGPLNWITFNVGYHNEHHD 264 (320)
Q Consensus 186 ~~~~~~~~~~~~~~l~~~~g~~~l~~~ll~~~~~~~~~~~~~~~~~eH~~~~-~~~~t~s~~~~~~~l~~n~~yH~eHHl 264 (320)
++.+...++++.++++..+|+..++|+++..+++.+++|++++++.||+.++ +.++|+|+++++|++++|+|||.|||+
T Consensus 159 ~~~n~~~~~~~~~~l~~~~G~~~~lyll~~~~~~~~~~p~~g~~i~Eh~~~~~~~~~t~S~y~~~~~~~~n~~yH~~HH~ 238 (289)
T cd03508 159 EVINIVVQITFDYLIYYFFGWKSLAYLLLGSFLGGGLHPLAGHFISEHYVFTGKGQETYSYYGPLNLLTFNVGYHNEHHD 238 (289)
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcccccccccccccccccCcCCccchHHHHHHhhccChHHHhcC
Confidence 7778778788877777888988777877778888888999999999999876 668899988899999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHhhcCCCCcccHHHHHHHhhhCCCCCcccccccc
Q psy10886 265 FPAVPGSRLPMVKKIASEYYDNLPQHHSWSAVLYDFVMDPDIGPYARMKRK 315 (320)
Q Consensus 265 fP~vP~~~Lp~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~ 315 (320)
+|+||||+||++++..+|+|++++.++||.+++++|++|+.+|++|||+|+
T Consensus 239 ~p~iP~~~Lp~~~~~~~~~~~~~~~~~~y~~v~~~~~~~~~~~~~~r~~r~ 289 (289)
T cd03508 239 FPYIPGTRLPKLRKIAPEFYDNLPQHTSWPRVLYDFIMDDNVGPYSRVKRK 289 (289)
T ss_pred CCCCCcccHHHHHHHCHHHHhCCCcCCCHHHHHHHHhcCCCCCCcccccCC
Confidence 999999999999999999999999899999999999999999999999995
No 4
>cd03511 Rhizopine-oxygenase-like This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins. It has been proposed that MocD, MocE (Rieske-like ferredoxin), and MocF (ferredoxin reductase) under the regulation of MocR, act in concert to form a ferredoxin oxygenase system that demethylates 3-O-MSI to form scyllo-inosamine. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA d
Probab=100.00 E-value=5.7e-35 Score=267.24 Aligned_cols=259 Identities=20% Similarity=0.268 Sum_probs=159.7
Q ss_pred hHHhhhhcCCCchHHHHHHHHHHHHHHHH--HHhcCchhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcchHHHHH
Q psy10886 31 PEIKKLFGSDPKFKYIVLSMVLVQFVSMY--FLRNVSWPVLLTVAYCFGGVINHSLMLSIHEMAHNLAFGHSRPTANRIL 108 (320)
Q Consensus 31 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~w~~~~~~a~~l~~~~~~~~~~l~HE~~H~~~f~s~~~~~N~~~ 108 (320)
+|+++|+++|+.+.++.++..++.++++. +....+++..+++++++|..+ .+++.++|||+|++++++ +++|+++
T Consensus 4 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~He~~H~~~~~~--~~~N~~~ 80 (285)
T cd03511 4 QELKQLMQRSDAPGLLDTALWLGALAVSGILIAWTWGSWWALPAFLVYGVLY-AALFARWHECVHGTAFAT--RWLNDAV 80 (285)
T ss_pred HHHHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHhhcccccCC--chHHHHH
Confidence 68999999999998877765544443322 222233333344456566665 578889999999999998 4599999
Q ss_pred HHHhccccccccchhhhHHhHHhhhhcCCCCCCCCcchh----hHHHHhhhhhHHHHHHHHHHHHHH-hhccccCCCC--
Q psy10886 109 SLIANLPIGIPFAITFKYYHLEHHRYQGDEKLDTDIPTY----MEARLFCTTFGKFIWVCLQPFFYA-FRPIFTYPKA-- 181 (320)
Q Consensus 109 G~l~~~~~~~~~~~~~r~~H~~HH~~~n~~~~DpD~~~~----~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~-- 181 (320)
|.+++.+++.|+. .||..|+.||+++|++++|||.... +...+........++..+..++.. ........+.
T Consensus 81 g~l~~~~~~~~~~-~~~~~H~~HH~~~~~~~~Dpd~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~ 159 (285)
T cd03511 81 GQIAGLMILLPPD-FFRWSHARHHRYTQIPGRDPELAVPRPPTLREYLLALSGLPYWWGKLRTVFRHAFGAVSEAEKPFI 159 (285)
T ss_pred HHHHHHHhcCChH-HHHHHHHHHhcCcCCCCCCCCCCCCCchHHHHHHHHHhChHHHHHHHHHHHHHHhcccccccCCCC
Confidence 9998999999999 6999999999999999999997432 111111111111112222222110 0000101111
Q ss_pred --ccHHHHH-HHHHHHHHHH---HHHHHhh-hHHHHHHHHHHHHhhcccccceeeeccccccCCC----cccccc--ccc
Q psy10886 182 --PTALELF-NTVVQISFDV---FICYFLG-GRMLSYMLLGSLMAMGLHPVAGHFVSEHYMFKKG----YETYSY--YGP 248 (320)
Q Consensus 182 --~~~~~~~-~~~~~~~~~~---~l~~~~g-~~~l~~~ll~~~~~~~~~~~~~~~~~eH~~~~~~----~~t~s~--~~~ 248 (320)
..+.+.. ...+.+++.+ .+....| +..+.++++|.+++..+..+ +.++||.+.++. .+|++. +.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~wllP~l~~~~~~~~--~~~~eH~~~~~~~~~~~~trs~~~~~~ 237 (285)
T cd03511 160 PAEERPKVVREARAMLAVYAGLIALSLYLGSPLLVLVWGLPLLLGQPILRL--FLLAEHGGCPEDANDLRNTRTTLTNPP 237 (285)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH--HHHhhcCCCCcccchhhhhhhhhhhHH
Confidence 1111111 1111111111 1112334 33445566776654333322 457999986532 235543 246
Q ss_pred chhhhccccccccccCCCCCCCCChHHHHHHHHHhhcCCCCcccHHHHH
Q psy10886 249 LNWITFNVGYHNEHHDFPAVPGSRLPMVKKIASEYYDNLPQHHSWSAVL 297 (320)
Q Consensus 249 ~~~l~~n~~yH~eHHlfP~vP~~~Lp~~~~~~~~~~~~~~~~~~y~~~~ 297 (320)
.+++++|+|||+|||+||+|||||||++++.+++..... ..||.+++
T Consensus 238 ~~~l~~n~nyH~eHHl~P~vP~y~Lp~~h~~L~~~~~~~--~~~y~~~~ 284 (285)
T cd03511 238 LRFLYWNMPYHAEHHMYPSVPFHALPKLHELIKDDLPVP--YPGYIAVY 284 (285)
T ss_pred HHHHHcCCchHHHHhcCCCCcHhHHHHHHHHHHHhCCCC--CCcHHHHh
Confidence 789999999999999999999999999999999886543 35887765
No 5
>PLN02598 omega-6 fatty acid desaturase
Probab=100.00 E-value=7e-33 Score=262.56 Aligned_cols=270 Identities=16% Similarity=0.177 Sum_probs=159.2
Q ss_pred cceecCCCCCChhHhHHHHhhChHHhhhhcCCCchHHHHHHHHHHHHHHHHH-HhcCchhHHHHHHHHHHHHHHHHHHHH
Q psy10886 9 DFEWTYTEEPHASRRKEILKKYPEIKKLFGSDPKFKYIVLSMVLVQFVSMYF-LRNVSWPVLLTVAYCFGGVINHSLMLS 87 (320)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~w~~~~~~a~~l~~~~~~~~~~l 87 (320)
||.--+++.+.....++|+++.| +++|++|+.+.+..++..++.++++++ +...+|+.+.++.+++|.++ .+++++
T Consensus 66 ~~~~~~~~~~~~~tl~~i~~aiP--~~~F~~s~~rs~~~l~~~i~~~~~~~~~~~~~~w~~~~l~~~~~G~~~-~~l~vl 142 (421)
T PLN02598 66 GFTQIGEPLPDNVTLKDVVKTLP--KEVFEIDDFKAWKTVAITVTSYALGLAAIAVAPWYLLPLAWAWLGTAI-TGFFVI 142 (421)
T ss_pred ChhhcCCcCCCCcCHHHHHHhCC--HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHH
Confidence 44444555555555688999999 999999999988776655554444443 22344655545445556655 889999
Q ss_pred HhhcccccccCCCcchHHHHHHHHhccccccccchhhhHHhHHhhhhcCCCCCCCCcc-hhhHHHHhhhhhHHHHH-HHH
Q psy10886 88 IHEMAHNLAFGHSRPTANRILSLIANLPIGIPFAITFKYYHLEHHRYQGDEKLDTDIP-TYMEARLFCTTFGKFIW-VCL 165 (320)
Q Consensus 88 ~HE~~H~~~f~s~~~~~N~~~G~l~~~~~~~~~~~~~r~~H~~HH~~~n~~~~DpD~~-~~~~~~~~~~~~~~~~~-~~~ 165 (320)
+|||+|+++++| +++|+++|.+++.+++.|+. +||..|+.||++||+.++|||.. ...+.+-......+... ..+
T Consensus 143 ~Hec~H~s~~~~--~~lN~~vG~~~~~~ll~p~~-~wr~~H~~HH~~tn~~~~D~~~~p~t~~e~~~~~~~~r~l~~~~~ 219 (421)
T PLN02598 143 GHDCGHNSFSKN--QLVEDIVGTIAFTPLIYPFE-PWRIKHNTHHAHTNKLVMDTAWQPFRPHQFDNADPLRKAMMRAGM 219 (421)
T ss_pred HHhccccCCCCC--HHHHHHHHHHHHHHhcCCHH-HHHHHHHHHccCcCCCCCCCCcCCcCHHHHhhcCHHHHHHHHHhH
Confidence 999999999998 55999999998888999999 79999999999999999999953 22222111112222221 122
Q ss_pred HHHHHHh--h-ccc--cCCCCcc---HHHH--HHHHHHHHHHHHH---HHHhhh-HHHHHHHHHHHHhhcccccceeeec
Q psy10886 166 QPFFYAF--R-PIF--TYPKAPT---ALEL--FNTVVQISFDVFI---CYFLGG-RMLSYMLLGSLMAMGLHPVAGHFVS 231 (320)
Q Consensus 166 ~~l~~~~--~-~~~--~~~~~~~---~~~~--~~~~~~~~~~~~l---~~~~g~-~~l~~~ll~~~~~~~~~~~~~~~~~ 231 (320)
.+++... . ... ..++.+. +.++ ....+.+....++ ....|. .++.++++|.+....+..+ .++.
T Consensus 220 GP~yl~~~~~~~~~~hf~~~~f~~~er~~v~~S~~~v~~~~~~~l~~~~~~~G~~~~~~~ylvP~Lv~~~wl~~--it~l 297 (421)
T PLN02598 220 GPLWWWASIGHWLFWHFDLNKFRPQEVPRVKISLAAVFAFMALGLPPLLYTTGPVGFVKWWLMPWLGYHFWMST--FTMV 297 (421)
T ss_pred hHHHHHHhhhcceeeccCcccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 2332111 0 000 0111111 1111 1111111001111 112342 2333444553322212111 1233
Q ss_pred ccccc-------C-----CC--cccccc-cc-cchhhhccccccccccCCCCCCCCChHHHHHHHHHhhcC
Q psy10886 232 EHYMF-------K-----KG--YETYSY-YG-PLNWITFNVGYHNEHHDFPAVPGSRLPMVKKIASEYYDN 286 (320)
Q Consensus 232 eH~~~-------~-----~~--~~t~s~-~~-~~~~l~~n~~yH~eHHlfP~vP~~~Lp~~~~~~~~~~~~ 286 (320)
+|..- + .+ ..|.+. ++ +++++++|+|||+|||+||+||+|+||++++.+++.+.+
T Consensus 298 hHt~p~ip~~~~~eW~~~~~al~~Tv~~~~~~~~~~L~hnIn~HV~HHLfP~IP~Y~lpea~~alk~~~g~ 368 (421)
T PLN02598 298 HHTAPHIPFKQAREWNAAQAQLNGTVHCDYPAWIEFLCHDISVHIPHHISSKIPSYNLRKAHASLQENWGK 368 (421)
T ss_pred hhcCCCCCccccccccHhhhhhcCceecCCcHHHHHHHcCCccchhhhcCCCCCcchHHHHHHHHHHHhcc
Confidence 44321 0 11 123332 23 569999999999999999999999999999999876543
No 6
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=100.00 E-value=1.2e-31 Score=261.27 Aligned_cols=280 Identities=20% Similarity=0.191 Sum_probs=163.3
Q ss_pred CCCChhHhHHHHhhChH--HhhhhcCCCchHHHHHHHHHHHHHHHHHH--hcCchhHHHHHHHHHHHHHHHHHHHHHhhc
Q psy10886 16 EEPHASRRKEILKKYPE--IKKLFGSDPKFKYIVLSMVLVQFVSMYFL--RNVSWPVLLTVAYCFGGVINHSLMLSIHEM 91 (320)
Q Consensus 16 ~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~w~~~~~~a~~l~~~~~~~~~~l~HE~ 91 (320)
+++..+..++.++..++ .+++|++++.++...++.+++.++++++. ...+++..+++++++|.++ +.++.++|||
T Consensus 179 ~~~~~~~~~dy~~Lr~~~~~~G~fk~~~~~y~~~l~~~i~l~a~~~~~~~~~~~~~~~ll~a~llgl~~-~q~g~l~HD~ 257 (526)
T PLN03198 179 VEPTPELLKDFRDLRALFLREQLFKSSKLYYVFKLLTNIAIFAASIAIICCSKSISAVLASACMMALCF-QQCGWLSHDF 257 (526)
T ss_pred ccccchhhhhHHHHHHHHHhccccccCcceeHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH-HHHHHHHHhc
Confidence 34433333444444444 57889999988776665554444443321 2223333466777788877 5666679999
Q ss_pred ccccccCCCcchHHHHHHHH-hccccccccchhhhHHhHHhhhhcCCCC-----CCCCcchhh----HHHHhhhhhHH--
Q psy10886 92 AHNLAFGHSRPTANRILSLI-ANLPIGIPFAITFKYYHLEHHRYQGDEK-----LDTDIPTYM----EARLFCTTFGK-- 159 (320)
Q Consensus 92 ~H~~~f~s~~~~~N~~~G~l-~~~~~~~~~~~~~r~~H~~HH~~~n~~~-----~DpD~~~~~----~~~~~~~~~~~-- 159 (320)
+|++++++ +++|+++|.+ +++++|.|+. |||..|+.||.+||..+ +|||+.+.. ..........+
T Consensus 258 ~H~s~~~~--~~~n~~~g~~~~~~~~G~s~~-~W~~~Hn~HH~~tN~~~~~~~~~DpDI~~~pl~~~~~~~~~~~~~~~~ 334 (526)
T PLN03198 258 LHNQVFET--RWLNEVVGYLIGNAVLGFSTG-WWKEKHNLHHAAPNECDQLYQPIDEDIDTLPLIAWSKDILATVENKTF 334 (526)
T ss_pred ccccccCC--cHHHHHHHHHHHHhhcCCCHH-HHHHHHHHhccCCCCCCccCCCCCCCcCccceeEechhhhhcchhhhH
Confidence 99999998 4599999976 5778899999 89999999999999987 799985421 11000000000
Q ss_pred HHHHHHHHHHH--------------HhhccccCC-CCc-cHHHHHHHHHHHHHHH-H-HHHHhhhHHHHHHHHHHHHhhc
Q psy10886 160 FIWVCLQPFFY--------------AFRPIFTYP-KAP-TALELFNTVVQISFDV-F-ICYFLGGRMLSYMLLGSLMAMG 221 (320)
Q Consensus 160 ~~~~~~~~l~~--------------~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~-~-l~~~~g~~~l~~~ll~~~~~~~ 221 (320)
..+..+|.+++ .++....++ +.. ...+....++.+.+.. + ++.+.+|..+.++++..++++.
T Consensus 335 ~~~~~yQh~~f~~ll~l~~~~~~~~s~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~l~l~~~~~~~~l~~~~l~~~~~g~ 414 (526)
T PLN03198 335 LRILQYQHLFFMALLFFARGSWLFWSWRYTSTAKLAPADRLLEKGTILFHYFWFIGTACYLLPGWKPLVWMAVTELMCGM 414 (526)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 01111221111 011111111 111 1122222222221111 1 1112234434333334333322
Q ss_pred ccccceeeeccccccCC---C--------ccccccc--ccchhhhccccccccccCCCCCCCCChHHHHHHHHHhhc--C
Q psy10886 222 LHPVAGHFVSEHYMFKK---G--------YETYSYY--GPLNWITFNVGYHNEHHDFPAVPGSRLPMVKKIASEYYD--N 286 (320)
Q Consensus 222 ~~~~~~~~~~eH~~~~~---~--------~~t~s~~--~~~~~l~~n~~yH~eHHlfP~vP~~~Lp~~~~~~~~~~~--~ 286 (320)
+.. ..+..+|...+. . .+|+++. .+++|+++|+|||+||||||+||++|||+++++++++|+ +
T Consensus 415 ~l~--~vF~lnH~~~~v~~~~~dw~~~Qv~tT~n~~~~~~~~wf~GGLN~QiEHHLFP~iP~~~l~~i~piVk~~C~k~G 492 (526)
T PLN03198 415 LLG--FVFVLSHNGMEVYNKSKEFVNAQIVSTRDIKANIFNDWFTGGLNRQIEHHLFPTMPRHNLNKIAPQVEAFCIKHG 492 (526)
T ss_pred HHH--hhhhccccCCCCCCCCcCHHHHHHhcCcCcCCchHHHHhhcCCcccchhhcCCCCchhhHHHHhHHHHHHHHHcC
Confidence 211 135677776441 1 2355543 458899999999999999999999999999999999996 7
Q ss_pred CCCc-ccHHHHHHHhh
Q psy10886 287 LPQH-HSWSAVLYDFV 301 (320)
Q Consensus 287 ~~~~-~~y~~~~~~~~ 301 (320)
+||. .+|.+.++..+
T Consensus 493 lpY~~~~~~~a~~~~l 508 (526)
T PLN03198 493 LVYEDVSIAAGTCKVL 508 (526)
T ss_pred CCCCCCCHHHHHHHHH
Confidence 9985 56776655443
No 7
>cd03509 DesA_FADS-like Fatty acid desaturase protein family subgroup, a delta-12 acyl-lipid desaturase-like, DesA-like, yet uncharacterized subgroup of membrane fatty acid desaturase proteins found in alpha-, beta-, and gamma-proteobacteria. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=100.00 E-value=1.8e-31 Score=242.91 Aligned_cols=212 Identities=21% Similarity=0.235 Sum_probs=131.7
Q ss_pred HHHHHHHhhcccccccCCCcchHHHHHHHHhccccccccchhhhHHhHHhhhhcC--CCCCCCCcchh-hHHH-------
Q psy10886 82 HSLMLSIHEMAHNLAFGHSRPTANRILSLIANLPIGIPFAITFKYYHLEHHRYQG--DEKLDTDIPTY-MEAR------- 151 (320)
Q Consensus 82 ~~~~~l~HE~~H~~~f~s~~~~~N~~~G~l~~~~~~~~~~~~~r~~H~~HH~~~n--~~~~DpD~~~~-~~~~------- 151 (320)
...+.++|||+|+++||| +++|+++|.++ +.++.|+. .||..|+.||++|| ++++|||.... .+.+
T Consensus 39 ~~~~~l~Hd~~Hg~~~~~--~~~N~~~g~~~-~~l~~p~~-~wr~~H~~HH~~~nl~~~~~Dpd~~~~~~~~~~~~~~~~ 114 (288)
T cd03509 39 ALHSSLQHELLHGHPTRS--RWVNEALGYPP-LALWYPYT-RYRDTHLAHHRDEDLTDPGDDPESNYLSPEQWARLPRWQ 114 (288)
T ss_pred HHHHHHHHHhhccCcccC--hHHHHHHHHHH-HHHhcCHH-HHHHHHHHHcCCCCCCCCCCCCccceecHHHHhhCcHHH
Confidence 445788999999999998 55999999874 44568998 69999999999998 55689996431 1110
Q ss_pred -----HhhhhhHHHHHHHHHHHHH---Hhhcccc--CCCCccHHHHHHHHHHHHH----HHHHHHHhhhHHHHHHHHHHH
Q psy10886 152 -----LFCTTFGKFIWVCLQPFFY---AFRPIFT--YPKAPTALELFNTVVQISF----DVFICYFLGGRMLSYMLLGSL 217 (320)
Q Consensus 152 -----~~~~~~~~~~~~~~~~l~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~l~~~~g~~~l~~~ll~~~ 217 (320)
.+++..+++. +.+++. .++.... .++....... ++..++. .+.+....|++++.|++.+.+
T Consensus 115 r~~~~~~~~~~~~~l---~gp~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~ 189 (288)
T cd03509 115 RALLRANNTLLGRLI---LGPPLGLIAFARDEFRALRAGDRAALRA--WLLHAALLAPLLAWLQLSAGIPWWAYLLAVYY 189 (288)
T ss_pred HHHHHHhhcchhHHh---hhhHHHHHHHHHHHHHHhccccHHHHHH--HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 0011222211 111110 1111111 1111111111 1111111 111111235666666654566
Q ss_pred HhhcccccceeeeccccccCCCccccc----ccccchhhhccccccccccCCCCCCCCChHHHHHHHHHhhcC---CCCc
Q psy10886 218 MAMGLHPVAGHFVSEHYMFKKGYETYS----YYGPLNWITFNVGYHNEHHDFPAVPGSRLPMVKKIASEYYDN---LPQH 290 (320)
Q Consensus 218 ~~~~~~~~~~~~~~eH~~~~~~~~t~s----~~~~~~~l~~n~~yH~eHHlfP~vP~~~Lp~~~~~~~~~~~~---~~~~ 290 (320)
++..+..+ +.+.||.+.++.. +++ ..+++||+++|+|||.|||++|+||||+||++++.+++.|.+ ....
T Consensus 190 la~~~~~~--~~~~Eh~~~~~~~-~rs~~~~~~~~~~~l~~ninyH~~HH~~P~vP~y~Lp~~h~~~~~~~~~~~~~~~~ 266 (288)
T cd03509 190 PALSLAKI--RTFLEHRAHERPR-GRTVINEAGGPLRLLFLNNNLHVVHHDLPTLPWYDLPRLYRARRDAYLRRNGGFVY 266 (288)
T ss_pred HHHHHHhh--chHhhccCCCCcc-CCceeeeCcHHHHHHHhcCCchHhhcCCCCCCcccHHHHHHHhHHHHhhcCCCccC
Confidence 66554433 6889999754322 222 234689999999999999999999999999999999988853 2235
Q ss_pred ccHHHHHHHhhhCCC
Q psy10886 291 HSWSAVLYDFVMDPD 305 (320)
Q Consensus 291 ~~y~~~~~~~~~~~~ 305 (320)
+||.++++.+..+++
T Consensus 267 ~~y~~~~~~~~~~~~ 281 (288)
T cd03509 267 RGYGELFRRHAWRAK 281 (288)
T ss_pred CCHHHHHHHHhcccc
Confidence 899999999887544
No 8
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=100.00 E-value=2.3e-31 Score=258.57 Aligned_cols=267 Identities=16% Similarity=0.201 Sum_probs=158.0
Q ss_pred HHhhChHHh--hhhcCCCchHHHHHHHHHHHHHHHHH--HhcCchhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCc
Q psy10886 26 ILKKYPEIK--KLFGSDPKFKYIVLSMVLVQFVSMYF--LRNVSWPVLLTVAYCFGGVINHSLMLSIHEMAHNLAFGHSR 101 (320)
Q Consensus 26 ~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~w~~~~~~a~~l~~~~~~~~~~l~HE~~H~~~f~s~~ 101 (320)
.++..++++ +++++++..+...++.+.+.++++++ ....+++..+++++++|.++. .++.++||++|++++++
T Consensus 114 y~~L~~~v~~~g~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aillg~~~~-~~g~l~HDa~H~~~~~~-- 190 (485)
T PLN03199 114 YRDLRAKLIMMGMFKSNKMFYAYKCLFNMAIWAAACALVFYSDRFAMHIASALLLGLFFQ-QCGWLAHDFLHHQVFKK-- 190 (485)
T ss_pred HHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhCC--
Confidence 444444555 99999998876666555555544433 224456556778888888874 44458999999999998
Q ss_pred chHHHHHHHH-hccccccccchhhhHHhHHhhhhcCC-------CCCCCCcchhh----H----HH---Hhh----hhhH
Q psy10886 102 PTANRILSLI-ANLPIGIPFAITFKYYHLEHHRYQGD-------EKLDTDIPTYM----E----AR---LFC----TTFG 158 (320)
Q Consensus 102 ~~~N~~~G~l-~~~~~~~~~~~~~r~~H~~HH~~~n~-------~~~DpD~~~~~----~----~~---~~~----~~~~ 158 (320)
+++|+++|.+ ++++.|.|.. ||+..|+.||++||. +++|||+.... . .. ... ....
T Consensus 191 ~~~N~~~g~~~g~l~~G~S~~-wW~~~Hn~HH~~tN~~~~~~~~~~~DPDI~~~p~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (485)
T PLN03199 191 RKHGDLGGIFWGDLMQGFSMQ-WWKNKHNGHHAVPNLHCSSADAQDGDPDIDTMPLLAWSLKQAQSFREINADGKDSGFV 269 (485)
T ss_pred chHHHHHHHHHHHhccCCChH-HHHHHHhhhhcCcCcCccccCCCCCCCCCCCCceeeecHHHhhhHhhhhhhccccchh
Confidence 4599999965 5788899998 899999999999997 36799974211 0 00 000 0000
Q ss_pred HHHHHHHHHHH-----H---------Hhhcccc-----CC-------CCcc--HHHHHHHHHHHHHHHHHHH-H--hhh-
Q psy10886 159 KFIWVCLQPFF-----Y---------AFRPIFT-----YP-------KAPT--ALELFNTVVQISFDVFICY-F--LGG- 206 (320)
Q Consensus 159 ~~~~~~~~~l~-----~---------~~~~~~~-----~~-------~~~~--~~~~~~~~~~~~~~~~l~~-~--~g~- 206 (320)
+ +...+|.++ + .+...+. .. +... ..|....++.+.+..++.. + +++
T Consensus 270 ~-~~~~~Qh~~~~p~l~l~~l~w~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~lp~~~~~~~~~ 348 (485)
T PLN03199 270 K-FAIKFQAFFYFPILLLARISWLNESFKCAFGLGAASENAALELEAKGLQYPLLEKAGILLHYAWMFTLSSGFGRFSFA 348 (485)
T ss_pred h-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence 0 111222221 1 0111110 00 1000 0122122221111111111 1 111
Q ss_pred HHHHHHHHHHHHhhcccccceeeeccccccC---CC----------ccccccc-------ccchhhhccccccccccCCC
Q psy10886 207 RMLSYMLLGSLMAMGLHPVAGHFVSEHYMFK---KG----------YETYSYY-------GPLNWITFNVGYHNEHHDFP 266 (320)
Q Consensus 207 ~~l~~~ll~~~~~~~~~~~~~~~~~eH~~~~---~~----------~~t~s~~-------~~~~~l~~n~~yH~eHHlfP 266 (320)
..+.++++..+.++... ...+..+|...+ ++ .+|+++. .+++|+++|+|||+||||||
T Consensus 349 ~~l~~~~~~~~~~g~~l--~~~f~l~H~~~~~~~~~~~~d~~~~Qv~TT~n~~~~~~~~s~~~~wf~GGLN~QIEHHLFP 426 (485)
T PLN03199 349 YSAFYFFTATASCGFFL--AIVFGLGHNGMATYDADARPDFWKLQVTTTRNIIGGHGFPQAFVDWFCGGLQYQVDHHLFP 426 (485)
T ss_pred HHHHHHHHHHHHHhhHh--eEEEecCCccccccCCCCCccHHHHHHHhccCccCCCCCcchHHHHHhccchhhhhhhcCC
Confidence 22334434433332221 224667777644 11 2366663 26889999999999999999
Q ss_pred CCCCCChHHHHHHHHHhhc--CCCCc-ccHHHHHHH
Q psy10886 267 AVPGSRLPMVKKIASEYYD--NLPQH-HSWSAVLYD 299 (320)
Q Consensus 267 ~vP~~~Lp~~~~~~~~~~~--~~~~~-~~y~~~~~~ 299 (320)
+||++|||++.++++++|+ ++||. .++.+.++.
T Consensus 427 ~mp~~~y~~i~piVk~~C~k~glpY~~~~~~~a~~~ 462 (485)
T PLN03199 427 MLPRHNIAKCHALVESFCKEWGVKYHEADLVDGTME 462 (485)
T ss_pred CCchhhHHhhhHHHHHHHHHhCCCccccCHHHHHHH
Confidence 9999999999999999996 79986 456655443
No 9
>COG3239 DesA Fatty acid desaturase [Lipid metabolism]
Probab=99.97 E-value=1.5e-31 Score=249.35 Aligned_cols=268 Identities=18% Similarity=0.200 Sum_probs=141.8
Q ss_pred HHHHhhChHHhhhhcCCCchHHHHHHHHHHHHHHHHH-H-hcCchhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCc
Q psy10886 24 KEILKKYPEIKKLFGSDPKFKYIVLSMVLVQFVSMYF-L-RNVSWPVLLTVAYCFGGVINHSLMLSIHEMAHNLAFGHSR 101 (320)
Q Consensus 24 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~w~~~~~~a~~l~~~~~~~~~~l~HE~~H~~~f~s~~ 101 (320)
+++..+.+ ++..+.|....+..+..+++.+++... . ...+|+.. ..+++++++...++++++|||+|++++|+
T Consensus 19 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~-~l~~~~~~~~l~~~~~v~Hd~~Hgs~~~~-- 93 (343)
T COG3239 19 DSIRARLP--KPRTRRDAIAILITFLALAGLWALLALSLAYWPSWWLL-PLALLLAGLLLTGLFSVGHDCGHGSFFKN-- 93 (343)
T ss_pred hhHHhhCc--cccccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHHHHhhhhhccccchhhh--
Confidence 45555555 445555554444444333333333222 1 23345543 44666777666888999999999999988
Q ss_pred chHHHHHHHHhccccccccchhhhHHhHHhhhhcCCCCCCCCcchhhHH----HHhhhhhHHHHHHHHHHHH-H---Hhh
Q psy10886 102 PTANRILSLIANLPIGIPFAITFKYYHLEHHRYQGDEKLDTDIPTYMEA----RLFCTTFGKFIWVCLQPFF-Y---AFR 173 (320)
Q Consensus 102 ~~~N~~~G~l~~~~~~~~~~~~~r~~H~~HH~~~n~~~~DpD~~~~~~~----~~~~~~~~~~~~~~~~~l~-~---~~~ 173 (320)
+|+||++|.+++.+.+.|+. .||..|++||++||++|+|||....... ..+.....+..|..+.... . .+.
T Consensus 94 r~iNd~ig~l~~~~~~~p~~-~wR~~H~~HH~~t~~~~~d~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~ 172 (343)
T COG3239 94 RWINDLIGHLAAALLLAPPV-FWRISHNQHHAHTNILDDDPETYVSYPEQLRRGPLRFQLIRLPWLAFGFGPRWALLHFE 172 (343)
T ss_pred hhHHHHHHHHHHHHHhcChh-hhhhhHHHhhcccCCCCCCHHHHHhCchhhhhhhHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 56999999998888888898 6999999999999999878775332111 0011011111111111000 0 011
Q ss_pred c---cccCCCCccHHH-HHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhcccccceeeeccccccCC-----Ccc-
Q psy10886 174 P---IFTYPKAPTALE-LFNTVVQISFDVFICYFLGG--RMLSYMLLGSLMAMGLHPVAGHFVSEHYMFKK-----GYE- 241 (320)
Q Consensus 174 ~---~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~g~--~~l~~~ll~~~~~~~~~~~~~~~~~eH~~~~~-----~~~- 241 (320)
. .+.+........ .......+....+....++| ..++...++.+.....+.++ ..+.++...+. ..+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~p~l~~~~~~~~~~~~~h~~-~~~~~~~~~d~~~~~~~l~~ 251 (343)
T COG3239 173 LLEKLFKRSGKAPKAAALATLLAAIGLAALLALAFFWGLIPLLLVGLWLVLVLFVHHTF-DLLPHHGLEDWQWSDRALNA 251 (343)
T ss_pred hhhhccCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHhhccc-ccccccccccchHHHHHHhc
Confidence 1 111111111111 11111111111111111222 11111112222221111110 12222322221 111
Q ss_pred --cccccccchhhhccccccccccCCCCCCCCChHHHHHHHHHhhc--CCCCcccHHHHHH
Q psy10886 242 --TYSYYGPLNWITFNVGYHNEHHDFPAVPGSRLPMVKKIASEYYD--NLPQHHSWSAVLY 298 (320)
Q Consensus 242 --t~s~~~~~~~l~~n~~yH~eHHlfP~vP~~~Lp~~~~~~~~~~~--~~~~~~~y~~~~~ 298 (320)
+.+...+++|+++|+|||+|||+||+||||+||++++.+++.++ +..+.++|.+...
T Consensus 252 ~~~~~~~~~~~~l~~n~nyH~~HHl~P~vP~y~lp~~~~~~~~~~~~~~~~~~~~y~~~~~ 312 (343)
T COG3239 252 RSNVDAPPLLRFLTGNINYHVEHHLFPDVPWYRLPRAHRLIKEALGERGLTIYTGYREFKL 312 (343)
T ss_pred cCccCchHHHHHhcCCccccHhhhCCCCCchhhHHHHHHHHHHHcCcCCchhhhhhhhhhh
Confidence 23323468999999999999999999999999999999999876 4445567776653
No 10
>cd03514 CrtR_beta-carotene-hydroxylase Beta-carotene hydroxylase (CrtR), the carotenoid zeaxanthin biosynthetic enzyme catalyzes the addition of hydroxyl groups to the beta-ionone rings of beta-carotene to form zeaxanthin and is found in bacteria and red algae. Carotenoids are important natural pigments; zeaxanthin and lutein are the only dietary carotenoids that accumulate in the macular region of the retina and lens. It is proposed that these carotenoids protect ocular tissues against photooxidative damage. CrtR does not show overall amino acid sequence similarity to the beta-carotene hydroxylases similar to CrtZ, an astaxanthin biosynthetic beta-carotene hydroxylase. However, CrtR does show sequence similarity to the green alga, Haematococcus pluvialis, beta-carotene ketolase (CrtW), which converts beta-carotene to canthaxanthin. Sequences of the CrtR_beta-carotene-hydroxylase domain family, as well as, the CrtW_beta-carotene-ketolase domain family appear to be structurally related
Probab=99.97 E-value=1.7e-31 Score=232.64 Aligned_cols=180 Identities=21% Similarity=0.295 Sum_probs=121.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcchHHHHHHHHhccccccccchhhhHHhHHhhhhcCCCCCCCCc
Q psy10886 65 SWPVLLTVAYCFGGVINHSLMLSIHEMAHNLAFGHSRPTANRILSLIANLPIGIPFAITFKYYHLEHHRYQGDEKLDTDI 144 (320)
Q Consensus 65 ~w~~~~~~a~~l~~~~~~~~~~l~HE~~H~~~f~s~~~~~N~~~G~l~~~~~~~~~~~~~r~~H~~HH~~~n~~~~DpD~ 144 (320)
+|+... +++++++.....+++++|||+|++++++| ++|+++|.+++++.+.|+. .||..|+.||+++|++++|||.
T Consensus 20 ~~~~~~-~~~~~~~~~~~~~~~~~Hda~H~~~~~~~--~~N~~~g~~~~~~~~~~~~-~w~~~H~~HH~~~~~~~~DpD~ 95 (207)
T cd03514 20 SYLPLW-VCFILNTLSLHLAGTVIHDASHKAASRNR--WINELIGHVSAFFLGFPFP-VFRRVHMQHHAHTNDPEKDPDH 95 (207)
T ss_pred ccchHH-HHHHHHHHHHHHHHHHHHHcccccccCCc--cHHHHHHHHHHHHHhCCHH-HHHHHHHHHhcCcCcCCcCccH
Confidence 355433 34445555557888999999999999984 5999999998899999999 6999999999999999999996
Q ss_pred chhhHHHHhhhhhHHHHHHHHHHHHHHhhccccCCCCccHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q psy10886 145 PTYMEARLFCTTFGKFIWVCLQPFFYAFRPIFTYPKAPTALELFNTVVQISFDVFICYFLGGRMLSYMLLGSLMAMGLHP 224 (320)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~~ll~~~~~~~~~~ 224 (320)
.. .. +.. ...+..+...++++...++..+.++++|.+.+..+..
T Consensus 96 ~~-----------~~--~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~l~~~iP~l~~~~~l~ 139 (207)
T cd03514 96 FL-----------LE--WLV-----------------------ARSLFITLLVIAILFGFLWELLNLWFLPALIVGTYLA 139 (207)
T ss_pred HH-----------HH--HHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 50 00 000 0000001111111222334555555667554433221
Q ss_pred cceeeeccccccCCCc---ccccccc-cchhhhccccccccccCCCCCCCCChHHHHHHHHHhhc
Q psy10886 225 VAGHFVSEHYMFKKGY---ETYSYYG-PLNWITFNVGYHNEHHDFPAVPGSRLPMVKKIASEYYD 285 (320)
Q Consensus 225 ~~~~~~~eH~~~~~~~---~t~s~~~-~~~~l~~n~~yH~eHHlfP~vP~~~Lp~~~~~~~~~~~ 285 (320)
.. ..+.||.+.++++ .+++..+ +++++++|+|||.|||+||+||+||||++++.+|+..+
T Consensus 140 ~~-~~~~~H~~~~~~~~~~~~~~~~~~l~~~l~~~~nyH~~HHL~P~IP~y~Lp~a~~~~~~~~~ 203 (207)
T cd03514 140 LF-FDWLPHHPFEETQRWDNSRVYPSKLLNPLIMGQNYHLVHHLWPSIPWYRYPEAYYANKPLLD 203 (207)
T ss_pred HH-heeeCccCCCCccchhhhhcccchhHheeecCCchhHHHhCCCCCchhhhHHHHHHhHHHHh
Confidence 11 3567888755332 2344333 46899999999999999999999999999999887653
No 11
>PLN02498 omega-3 fatty acid desaturase
Probab=99.97 E-value=1.7e-30 Score=244.97 Aligned_cols=252 Identities=18% Similarity=0.234 Sum_probs=152.7
Q ss_pred HhHHHHhhChHHhhhhcCCCchHHHHHHHHHHHHHHHHH--HhcCchhHHHHHHHHHHHHHHHHHHHHHhhcccccccCC
Q psy10886 22 RRKEILKKYPEIKKLFGSDPKFKYIVLSMVLVQFVSMYF--LRNVSWPVLLTVAYCFGGVINHSLMLSIHEMAHNLAFGH 99 (320)
Q Consensus 22 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~w~~~~~~a~~l~~~~~~~~~~l~HE~~H~~~f~s 99 (320)
..++|+++.| +.+|++|+++.+..++..+++++++++ ....+|+.+.+..++.|.++ .++++++|||+|+++|+|
T Consensus 103 tl~dir~aIP--~hcF~~s~~rs~~yv~~d~~vi~~l~~~a~~~~~w~~wpl~w~~~G~~~-~gL~vl~HDcgHgsf~~~ 179 (450)
T PLN02498 103 NLADIRAAIP--KHCWVKNPWRSMSYVVRDVAVVFGLAAAAAYFNNWVVWPLYWFAQGTMF-WALFVLGHDCGHGSFSNN 179 (450)
T ss_pred CHHHHHHhCC--HHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHhccccccccC
Confidence 4689999999 899999999987766655554333222 12346766656566666666 899999999999999999
Q ss_pred CcchHHHHHHHHhccccccccchhhhHHhHHhhhhcCCCCCCCCcc-hhhHHHHhhhhhHHHHH------HHHHHHHHHh
Q psy10886 100 SRPTANRILSLIANLPIGIPFAITFKYYHLEHHRYQGDEKLDTDIP-TYMEARLFCTTFGKFIW------VCLQPFFYAF 172 (320)
Q Consensus 100 ~~~~~N~~~G~l~~~~~~~~~~~~~r~~H~~HH~~~n~~~~DpD~~-~~~~~~~~~~~~~~~~~------~~~~~l~~~~ 172 (320)
+++|+++|.+++.+++.|+. +||.+|..||++||+.++||+.. ...+..-......++.. .+..+++...
T Consensus 180 --k~lNd~vG~ll~~~ll~py~-~Wr~sH~~HH~~Tn~~e~D~~~~P~t~~~y~~l~~~~~~~~~~~~~~~~g~p~YL~~ 256 (450)
T PLN02498 180 --PKLNSVVGHLLHSSILVPYH-GWRISHRTHHQNHGHVENDESWHPLSEKIYKSLDKVTRTLRFTLPFPMLAYPFYLWS 256 (450)
T ss_pred --hHHHHHHHHHHHHHhcCCHH-HHHHHHHHHhcCCCCCCCCCCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHhh
Confidence 45999999998999999999 79999999999999999999953 22211100000011110 0111222111
Q ss_pred hc-------------cccCCCCccHHHHHH--HHHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhcccccceeeecccccc
Q psy10886 173 RP-------------IFTYPKAPTALELFN--TVVQISFDVFICYFLGG-RMLSYMLLGSLMAMGLHPVAGHFVSEHYMF 236 (320)
Q Consensus 173 ~~-------------~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~g~-~~l~~~ll~~~~~~~~~~~~~~~~~eH~~~ 236 (320)
+. ++. +++........ ++.++...+.+....|+ ..+.++++|.++...+..+ ..+.+|.+.
T Consensus 257 ~~~g~~~sHF~p~s~lF~-~~er~~V~~S~~~~~~~~~~l~~l~~~~G~~~~l~~Y~vP~lv~~~WL~~--iTyLhHt~~ 333 (450)
T PLN02498 257 RSPGKKGSHFHPDSDLFV-PKERKDVITSTACWTAMAALLVCLSFVMGPIQMLKLYGIPYWIFVMWLDF--VTYLHHHGH 333 (450)
T ss_pred hccCCcCcccCCCcccCC-hhhhhheeeehHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH--hhhhcccCC
Confidence 11 111 11111110011 11111111111123453 2334444664433323222 244555522
Q ss_pred C------C--------C-ccc--ccccccchhhhccccccccccCCCCCCCCChHHHHHHHHHh
Q psy10886 237 K------K--------G-YET--YSYYGPLNWITFNVGYHNEHHDFPAVPGSRLPMVKKIASEY 283 (320)
Q Consensus 237 ~------~--------~-~~t--~s~~~~~~~l~~n~~yH~eHHlfP~vP~~~Lp~~~~~~~~~ 283 (320)
+ + + ..| |+ ++++|++++|+++|+.||+||+||+|||+++++.+|+.
T Consensus 334 ~~~iP~y~~~eWs~~rGaL~TvDR~-yg~i~~l~H~I~tHV~HHlf~~IPhYhl~eAt~aiK~~ 396 (450)
T PLN02498 334 EDKLPWYRGKEWSYLRGGLTTLDRD-YGWINNIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPV 396 (450)
T ss_pred CCCCCCCCCCCcchhhccceeecCc-ccchhhhhcCcccchhhhccCCCCCcCHHHHHHHHHHH
Confidence 1 1 1 123 34 37899999999999999999999999999999887654
No 12
>PLN02505 omega-6 fatty acid desaturase
Probab=99.97 E-value=2e-30 Score=242.93 Aligned_cols=255 Identities=19% Similarity=0.215 Sum_probs=154.7
Q ss_pred hHhHHHHhhChHHhhhhcCCCchHHHHHHHHHHHHHHHHH--H----hcCchhHHH---HHHHHHHHHHHHHHHHHHhhc
Q psy10886 21 SRRKEILKKYPEIKKLFGSDPKFKYIVLSMVLVQFVSMYF--L----RNVSWPVLL---TVAYCFGGVINHSLMLSIHEM 91 (320)
Q Consensus 21 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~w~~~~---~~a~~l~~~~~~~~~~l~HE~ 91 (320)
..-++|+++.| +++|++|+.+.+..++..++.+++++. . ..++++.++ +.++++|.++ .++++++|||
T Consensus 31 ~tl~~ir~aiP--~~~f~~s~~rs~~~v~~d~~~i~~~~~~a~~~~~~~p~~~~~~l~~~~~~~~G~~~-~~l~vl~HDc 107 (381)
T PLN02505 31 FTLGDIKKAIP--PHCFKRSVLRSFSYLVYDLLIAALLYYVATNYIPLLPGPLSYVAWPLYWAAQGCVL-TGVWVIAHEC 107 (381)
T ss_pred ccHHHHHHhCC--HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHH-HHHHHHHHhh
Confidence 34689999999 899999999988776655554443332 1 112221121 2345566665 7889999999
Q ss_pred ccccccCCCcchHHHHHHHHhccccccccchhhhHHhHHhhhhcCCCCCCCCc-chhhHH-----HHhhhhhHHHHHHHH
Q psy10886 92 AHNLAFGHSRPTANRILSLIANLPIGIPFAITFKYYHLEHHRYQGDEKLDTDI-PTYMEA-----RLFCTTFGKFIWVCL 165 (320)
Q Consensus 92 ~H~~~f~s~~~~~N~~~G~l~~~~~~~~~~~~~r~~H~~HH~~~n~~~~DpD~-~~~~~~-----~~~~~~~~~~~~~~~ 165 (320)
+|+++++| +++|+++|.+++.+++.|+. +||..|+.||++||+.++|++. |...+. +..+.+..++...+.
T Consensus 108 gH~s~~~~--~~lN~~vG~i~~~~ll~p~~-~Wr~~H~~HH~~tn~~~~D~~~~P~~~~~~~~~~~~~~~p~~~~~~~~~ 184 (381)
T PLN02505 108 GHHAFSDY--QWLDDTVGLVLHSALLVPYF-SWKYSHRRHHSNTGSLERDEVFVPKKKSALPWYSKYLNNPPGRLLHIVV 184 (381)
T ss_pred cchhhhCC--hHHHHHHHHHHHHHHcCCHH-HHHHHHHHHhhccCCCCCCccccCcCHHHHhHHHHHhcChHHHHHHHHH
Confidence 99999999 45999999988778899999 7999999999999999999984 322221 111223333222111
Q ss_pred H-----HHHHHh----hcc-c----cCCC--CccHHHHHHH----HHHHHHHHHHHH---HhhhH-HHHHHHHHHHHhhc
Q psy10886 166 Q-----PFFYAF----RPI-F----TYPK--APTALELFNT----VVQISFDVFICY---FLGGR-MLSYMLLGSLMAMG 221 (320)
Q Consensus 166 ~-----~l~~~~----~~~-~----~~~~--~~~~~~~~~~----~~~~~~~~~l~~---~~g~~-~l~~~ll~~~~~~~ 221 (320)
. +++... ++. . ..|. .+...+...+ +..+++.++++. ..|+. .+.++++|.++...
T Consensus 185 ~~~~G~p~yl~~~~~g~~~~~~~~hf~p~s~lf~~~er~~v~~S~~~i~~~~~~l~~~~~~~G~~~~l~~y~vP~lv~~~ 264 (381)
T PLN02505 185 QLTLGWPLYLAFNVSGRPYDRFACHFDPYSPIFNDRERLQIYISDAGILAVSFGLYRLAAAKGLAWVLCVYGVPLLIVNA 264 (381)
T ss_pred HHHhHHHHHHHhhhcCCCCCcccccCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 1 222211 000 0 0011 0111121111 111222222222 23543 33444566554433
Q ss_pred ccccceeeeccccccC----C--------C-ccc--ccccccchhhhcccc-ccccccCCCCCCCCChHHHHHHHHHhh
Q psy10886 222 LHPVAGHFVSEHYMFK----K--------G-YET--YSYYGPLNWITFNVG-YHNEHHDFPAVPGSRLPMVKKIASEYY 284 (320)
Q Consensus 222 ~~~~~~~~~~eH~~~~----~--------~-~~t--~s~~~~~~~l~~n~~-yH~eHHlfP~vP~~~Lp~~~~~~~~~~ 284 (320)
+..+ .++.+|..-+ + + ..| +++ ++++++++|++ +|+.||++|+||+||||++++.+|+.+
T Consensus 265 wlv~--itylqHt~~~ip~~~~~~W~~~rgAl~tvdr~y-g~~~~l~h~I~~~Hv~HHl~srIP~Y~l~eA~~aik~~l 340 (381)
T PLN02505 265 FLVL--ITYLQHTHPALPHYDSSEWDWLRGALATVDRDY-GILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPIL 340 (381)
T ss_pred HHHH--HHHHhccCCCCCccCCCCcChhhccceeccCcc-hHHHHHHccCCcccchhhccCCCCCCCHHHHHHHHHHHh
Confidence 3211 3566776421 1 1 124 564 78999999996 999999999999999999998887654
No 13
>cd03510 Rhizobitoxine-FADS-like This CD includes the dihydrorhizobitoxine fatty acid desaturase (RtxC) characterized in Bradyrhizobium japonicum USDA110, and other related proteins. Dihydrorhizobitoxine desaturase is reported to be involved in the final step of rhizobitoxine biosynthesis. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=99.97 E-value=1.5e-30 Score=220.74 Aligned_cols=152 Identities=30% Similarity=0.416 Sum_probs=109.3
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcchHHHHHHH-HhccccccccchhhhHHhHHhhhhcCCCCC
Q psy10886 62 RNVSWPVLLTVAYCFGGVINHSLMLSIHEMAHNLAFGHSRPTANRILSL-IANLPIGIPFAITFKYYHLEHHRYQGDEKL 140 (320)
Q Consensus 62 ~~~~w~~~~~~a~~l~~~~~~~~~~l~HE~~H~~~f~s~~~~~N~~~G~-l~~~~~~~~~~~~~r~~H~~HH~~~n~~~~ 140 (320)
..++|++.+++.+++|+++ .++++++|||+|++++|||+ +|+++|. +++++++.|++ .||..|+.||+++|+ ++
T Consensus 14 ~~~~~~~~~l~~~~~g~~~-~~l~~l~Hea~H~~l~~~~~--~N~~~g~~~~~~p~~~~~~-~~r~~H~~HH~~~~~-~~ 88 (175)
T cd03510 14 AWPNWLAYLLAVLLIGARQ-RALAILMHDAAHGLLFRNRR--LNDFLGNWLAAVPIFQSLA-AYRRSHLKHHRHLGT-ED 88 (175)
T ss_pred HhccHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccccc--HHHHHHHHHHHhhhhCCHH-HHHHHHHHHhCccCC-CC
Confidence 3567888777777788877 88899999999999999855 9999996 57899999999 699999999999999 57
Q ss_pred CCCcchhhHHHHhhhhhHHHHHHHHHHHHHHhhccccCCCCccHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q psy10886 141 DTDIPTYMEARLFCTTFGKFIWVCLQPFFYAFRPIFTYPKAPTALELFNTVVQISFDVFICYFLGGRMLSYMLLGSLMAM 220 (320)
Q Consensus 141 DpD~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~~ll~~~~~~ 220 (320)
|||.. . + + .++++|.+...
T Consensus 89 Dpd~~----------------------------------------~-------~----~----------~~W~~P~~~~~ 107 (175)
T cd03510 89 DPDLA----------------------------------------L-------Y----L----------LLWLVPLLTVF 107 (175)
T ss_pred CCcHH----------------------------------------H-------H----H----------HHHHHHHHHHH
Confidence 99943 0 0 0 01112211111
Q ss_pred cccccceeeeccccccCCC-----ccccccc-cc-chhh--hccccccccccCCCCCCCCChHHHHHHH
Q psy10886 221 GLHPVAGHFVSEHYMFKKG-----YETYSYY-GP-LNWI--TFNVGYHNEHHDFPAVPGSRLPMVKKIA 280 (320)
Q Consensus 221 ~~~~~~~~~~~eH~~~~~~-----~~t~s~~-~~-~~~l--~~n~~yH~eHHlfP~vP~~~Lp~~~~~~ 280 (320)
... ...+.++||.+.++. .+||+.. ++ .+++ +.|+|||.|||++|+||+++||++|+.+
T Consensus 108 ~~~-~~~~~~~eH~~~~~~~~~~~~~tr~~~~~~~~r~l~~p~~~~YH~eHHl~P~vP~~~Lp~~h~~l 175 (175)
T cd03510 108 PLI-GRIREIAEHAGVPADEDPDARNTRTTFGGWIERLLFAPHNINYHLEHHLFPAVPFYNLPKAHRIL 175 (175)
T ss_pred HHH-HHHHHHHhccCCCCCCcchhhcCccccccHHHHHHHcccCCcHHHHHhCCcCCchhhHHHHHHhC
Confidence 000 000346899986532 3456543 23 3444 4699999999999999999999999853
No 14
>cd03513 CrtW_beta-carotene-ketolase Beta-carotene ketolase/oxygenase (CrtW, also known as CrtO), the carotenoid astaxanthin biosynthetic enzyme, initially catalyzes the addition of two keto groups to carbons C4 and C4' of beta-carotene. Carotenoids are important natural pigments produced by many microorganisms and plants. Astaxanthin is reported to be an antioxidant, an anti-cancer agent, and an immune system stimulant. A number of bacteria and green algae can convert beta-carotene into astaxanthin by using several ketocarotenoids as intermediates and CrtW and a beta-carotene hydroxylase (CrtZ). CrtW initially converts beta-carotene to canthaxanthin via echinenone, and CrtZ initially mediates the conversion of beta-carotene to zeaxanthin via beta-cryptoxanthin. After a few more intermediates are formed, CrtW and CrtZ act in combination to produce astaxanthin. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. Th
Probab=99.96 E-value=1.6e-28 Score=215.03 Aligned_cols=188 Identities=19% Similarity=0.270 Sum_probs=117.5
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHhhccccccc-CCCcchHHHHHHHHh-ccccccccchhhhHHhHHhhhhcCCCCC
Q psy10886 63 NVSWPVLLTVAYCFGGVINHSLMLSIHEMAHNLAF-GHSRPTANRILSLIA-NLPIGIPFAITFKYYHLEHHRYQGDEKL 140 (320)
Q Consensus 63 ~~~w~~~~~~a~~l~~~~~~~~~~l~HE~~H~~~f-~s~~~~~N~~~G~l~-~~~~~~~~~~~~r~~H~~HH~~~n~~~~ 140 (320)
+.+|+..+++++++++....++++++|||+|++++ ++ +++|+++|.++ +++.+.|+. .||..|.+||+++|++ +
T Consensus 25 ~~~~~~~~~~~~~~~g~l~~glfi~~HDa~Hg~~~~~~--~~~N~~iG~~~~~l~~g~~~~-~~~~~H~~HH~~~~~~-~ 100 (225)
T cd03513 25 GSISLLLIAAVVLLQTFLHTGLFIIAHDAMHGSLAPGN--PRLNRAIGRLCLFLYAGFSYD-RLLRKHHLHHRHPGTA-K 100 (225)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccCC--chHHHHHHHHHHHHhhcCCHH-HHHHHHHHHcCCCCCC-C
Confidence 44565555666667777778899999999999999 56 45999999886 687899999 6999999999999999 8
Q ss_pred CCCcchhhHHHHhhhhhHHHHHHHHHHHHHHhhccccCCCCccHHHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHH
Q psy10886 141 DTDIPTYMEARLFCTTFGKFIWVCLQPFFYAFRPIFTYPKAPTALELFNTVVQISFDVFICYFL--G-GRMLSYMLLGSL 217 (320)
Q Consensus 141 DpD~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--g-~~~l~~~ll~~~ 217 (320)
|||......... ..|.. .++ + + ... ++.. +...+++. ++.... + ...+.++++|.+
T Consensus 101 DpD~~~~~~~~~-------~~wy~--~f~---~----~--y~~-~~ql-i~l~ivw~-~~l~~~~~~~~~~~~~~~~P~l 159 (225)
T cd03513 101 DPDFHKGNPSGF-------LPWYL--HFM---S----N--YFG-WRQL-AILAAVWL-LLLGLGSAPLANLLLFWALPLI 159 (225)
T ss_pred CCCCCCCCCCCh-------HHHHH--HHH---H----h--HhH-HHHH-HHHHHHHH-HHHHHHcccHHHHHHHHHHHHH
Confidence 999754311111 01110 011 0 0 011 1111 11111111 112222 2 345666677866
Q ss_pred HhhcccccceeeeccccccC----CCcccccc--cccchhh-hccccccccccCCCCCCCCChHHH
Q psy10886 218 MAMGLHPVAGHFVSEHYMFK----KGYETYSY--YGPLNWI-TFNVGYHNEHHDFPAVPGSRLPMV 276 (320)
Q Consensus 218 ~~~~~~~~~~~~~~eH~~~~----~~~~t~s~--~~~~~~l-~~n~~yH~eHHlfP~vP~~~Lp~~ 276 (320)
++......++.+ ..|...+ +.+++++. ..+++++ ++++|||.|||+||+||||+||++
T Consensus 160 ~~~~~l~~f~T~-lpH~~~~~~~~~~~~a~~~~~~~~~~~l~c~~fgyH~eHH~fP~~Pw~~Lp~~ 224 (225)
T cd03513 160 LSSLQLFYFGTW-LPHRPGRGGFADRHRARSSRLSPVLSFLTCYHFGYHHEHHLSPSTPWWRLPEL 224 (225)
T ss_pred HHHHHHHHHHhh-cCCCCCCCCCCCcccceecCccHHHHHHHHHhcCcchhhccCCCCCcccCccc
Confidence 554443333323 3444332 22345553 2457775 588999999999999999999986
No 15
>cd03506 Delta6-FADS-like The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria. These desaturases are required for the synthesis of highly unsaturated fatty acids (HUFAs), which are mainly esterified into phospholipids and contribute to maintaining membrane fluidity. While HUFAs may be required for cold tolerance in bacteria, plants and fish, the primary role of HUFAs in mammals is cell signaling. These enzymes are described as front-end desaturases because they introduce a double bond between the pre-exiting double bond and the carboxyl (front) end of the fatty acid. Various substrates are involved, with both acyl-coenzyme A (CoA) and acyl-lipid desaturases present in this CD. Acyl-lipid desaturases are localized in the membranes of cyanobacterial thylakoid, plant endoplasmic reticulum (ER), and plastid; an
Probab=99.95 E-value=4e-28 Score=211.50 Aligned_cols=183 Identities=23% Similarity=0.251 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccCCCcchHHHHHHHHhccccccccchhhhHHhHHhhhhcCCCCCCCCcchhhHH
Q psy10886 71 TVAYCFGGVINHSLMLSIHEMAHNLAFGHSRPTANRILSLIANLPIGIPFAITFKYYHLEHHRYQGDEKLDTDIPTYMEA 150 (320)
Q Consensus 71 ~~a~~l~~~~~~~~~~l~HE~~H~~~f~s~~~~~N~~~G~l~~~~~~~~~~~~~r~~H~~HH~~~n~~~~DpD~~~~~~~ 150 (320)
++++++|... ..++.++|||+|+++++++ ++|+++|.+++.++|.|+. +||..|+.||++||++++|||.......
T Consensus 2 ~~ai~~g~~~-~~~~~~~Hd~~H~~~~~~~--~~n~~~g~~~~~~~g~s~~-~w~~~H~~HH~~tn~~~~Dpd~~~~~~~ 77 (204)
T cd03506 2 LLAILLGLFW-AQGGFLAHDAGHGQVFKNR--WLNKLLGLTVGNLLGASAG-WWKNKHNVHHAYTNILGHDPDIDTLPLL 77 (204)
T ss_pred HHHHHHHHHH-HHHHHHHHhccCccccCCc--hHHHHHHHHHHhccCCCHH-HHHHHHhhhcCcCCCCCCCCCCCcCceE
Confidence 3566677776 4777889999999999984 5999999988889999999 7999999999999999999997542110
Q ss_pred HHhhhhhHHHHHHHHHHHHHHhhccccCCCCccHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccceeee
Q psy10886 151 RLFCTTFGKFIWVCLQPFFYAFRPIFTYPKAPTALELFNTVVQISFDVFICYFLGGRMLSYMLLGSLMAMGLHPVAGHFV 230 (320)
Q Consensus 151 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~l~~~ll~~~~~~~~~~~~~~~~ 230 (320)
.. .. .....++...+. ...|..+...++.+. +..++++.+++..+. ...+.
T Consensus 78 ~~-~~------------------~~~~~~~~~~~~----~~~q~~~~~~~~~~~----~~~~~~~~~~~~~~l--~~~~~ 128 (204)
T cd03506 78 AR-SE------------------PAFGKDQKKRFL----HRYQHFYFFPLLALL----LLAFLVVQLAGGLWL--AVVFQ 128 (204)
T ss_pred Ee-cc------------------cccccchHHHHH----HHHHHHHHHHHHHHH----HHHHHHHHHHHhhhh--heEee
Confidence 00 00 000000000000 011111111111111 222234433333222 12456
Q ss_pred ccccccCC----C-----------cccccc--cccchhhhccccccccccCCCCCCCCChHHHHHHHHHhhcC
Q psy10886 231 SEHYMFKK----G-----------YETYSY--YGPLNWITFNVGYHNEHHDFPAVPGSRLPMVKKIASEYYDN 286 (320)
Q Consensus 231 ~eH~~~~~----~-----------~~t~s~--~~~~~~l~~n~~yH~eHHlfP~vP~~~Lp~~~~~~~~~~~~ 286 (320)
.+|...+- + .+|+++ ..+++|+++|+|||+|||+||+||+++||++++++++.|++
T Consensus 129 ~~H~~~~~~~~~~~~~~~w~~~q~~tt~~~~~~~~~~~l~ggln~qieHHLfP~ip~~~l~~~~~~v~~~~~~ 201 (204)
T cd03506 129 LNHFGMPVEDPPGESKNDWLERQVLTTRNITGSPFLDWLHGGLNYQIEHHLFPTMPRHNYPKVAPLVRELCKK 201 (204)
T ss_pred cccccccccCCCCCcccCHHHHHHhCcccCCCCCHHHHHhcchhhHHHHhcCCCchhhhHHHHHHHHHHHHHH
Confidence 77765321 0 124443 24689999999999999999999999999999999998864
No 16
>PF00487 FA_desaturase: Fatty acid desaturase This entry is only a subset of the Pfam family.; InterPro: IPR005804 Fatty acid desaturases are enzymes that catalyse the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: Bacterial fatty acid desaturases. Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 1. ; GO: 0006629 lipid metabolic process
Probab=99.95 E-value=4.4e-28 Score=215.70 Aligned_cols=219 Identities=23% Similarity=0.321 Sum_probs=122.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcchHHHHHHHHhccccccccchhhhHHhHHhhhhcCCCCCCCCcc
Q psy10886 66 WPVLLTVAYCFGGVINHSLMLSIHEMAHNLAFGHSRPTANRILSLIANLPIGIPFAITFKYYHLEHHRYQGDEKLDTDIP 145 (320)
Q Consensus 66 w~~~~~~a~~l~~~~~~~~~~l~HE~~H~~~f~s~~~~~N~~~G~l~~~~~~~~~~~~~r~~H~~HH~~~n~~~~DpD~~ 145 (320)
|+..++ ++++++.....++.++|||+|+++++++ ++|+++|.+++.+++.|+. +||..|+.||+++|++++|||..
T Consensus 3 ~~~~~~-~~~~~~~~~~~~~~~~H~~~H~~~~~~~--~~n~~l~~~~~~~~~~~~~-~wr~~H~~HH~~~~~~~~Dpd~~ 78 (257)
T PF00487_consen 3 WWWWLL-ALLLLGLSFARLFGLAHDAGHGAFFRSR--WLNDLLGRLLGLPIGGPYS-SWRISHNRHHHYTNNPDRDPDSW 78 (257)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHhccCCcccC--hHHHHHHHHHHHHhcCCHh-HhheeeeccccccCCccccCccc
Confidence 444434 4444444447888889999999999984 5999999998888999998 69999999999999999999976
Q ss_pred hhh----HHHHhhhhhHHHHHHHHHHHH----HHh----hccccCCCCccHHH-HHHHHHHHHHHHHHHHH---hhhHHH
Q psy10886 146 TYM----EARLFCTTFGKFIWVCLQPFF----YAF----RPIFTYPKAPTALE-LFNTVVQISFDVFICYF---LGGRML 209 (320)
Q Consensus 146 ~~~----~~~~~~~~~~~~~~~~~~~l~----~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~---~g~~~l 209 (320)
... ............+...+.... +.. +......+...... ....+..++..+++..+ .++..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (257)
T PF00487_consen 79 TRRLPPHQPWRPLFSYRRFLFRFLLSLFFPIWYFIFFFRKRRMRRRRKRPRRYLILAALLLALLLALLAALFFFSPWWAL 158 (257)
T ss_pred hhhhhhhhhhhhhhhhhhccccccccccccchhhhhhccccccccccccchhHHHHHHHhhhhhhhhhhhhcccccccch
Confidence 540 000000011111000000000 000 00000011110000 11111111111111111 112333
Q ss_pred HHHHHHHHHhhcccccceeeeccccccC---CC--cc--------ccc--ccccchhhhccccccccccCCCCCCCCChH
Q psy10886 210 SYMLLGSLMAMGLHPVAGHFVSEHYMFK---KG--YE--------TYS--YYGPLNWITFNVGYHNEHHDFPAVPGSRLP 274 (320)
Q Consensus 210 ~~~ll~~~~~~~~~~~~~~~~~eH~~~~---~~--~~--------t~s--~~~~~~~l~~n~~yH~eHHlfP~vP~~~Lp 274 (320)
++++++.+++...... ..+.||.+.+ +. .+ +.+ ...+++++++|+|||+|||+||+||+++||
T Consensus 159 ~~~~~~~~~~~~~~~~--~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~HHl~P~vp~~~l~ 236 (257)
T PF00487_consen 159 LLFLLPFLIGSFFLAF--VTYLEHYGLDPDDNEDTRDFYYRQLPGSSNVHNSWWLNWLTGGLNYHIEHHLFPGVPWYNLP 236 (257)
T ss_pred hHHHHHHhHHHHHHHH--hhHHhhhcccccccccccceecccccccccccCchhhhccccCCCChHHhCCCCCcCHHHHH
Confidence 3333443333222222 2467888753 11 00 111 123578999999999999999999999999
Q ss_pred HHHHHHHHhhc--CCCCc
Q psy10886 275 MVKKIASEYYD--NLPQH 290 (320)
Q Consensus 275 ~~~~~~~~~~~--~~~~~ 290 (320)
++++.+++.++ +++|.
T Consensus 237 ~~~~~~~~~~~~~~~~y~ 254 (257)
T PF00487_consen 237 EAHPILKEVCPEYGVPYN 254 (257)
T ss_pred HHHHHHHHHHHHcCCcee
Confidence 99999998875 56653
No 17
>cd03507 Delta12-FADS-like The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane enzymes, delta-12 acyl-lipid desaturases, oleate 12-hydroxylases, omega3 and omega6 fatty acid desaturases, and other related proteins, found in a wide range of organisms including higher plants, green algae, diatoms, nematodes, fungi, and bacteria. The expression of these proteins appears to be temperature dependent: decreases in temperature result in increased levels of fatty acid desaturation within membrane lipids subsequently altering cell membrane fluidity. An important enzyme for the production of polyunsaturates in plants is the oleate delta-12 desaturase (Arabidopsis FAD2) of the endoplasmic reticulum. This enzyme accepts l-acyl-2-oleoyl-sn-glycero-3-phosphocholine as substrate and requires NADH:cytochrome b oxidoreductase, cytochrome b, and oxygen for activity. FAD2 converts oleate(18:1) to linoleate (18:2) and is closely related to oleate 12-hydroxylase which cat
Probab=99.95 E-value=1.1e-26 Score=204.67 Aligned_cols=80 Identities=20% Similarity=0.259 Sum_probs=67.8
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcchHHHHHHHHhccccccccchhhhHHhHHhhhhcCCCCCCC
Q psy10886 63 NVSWPVLLTVAYCFGGVINHSLMLSIHEMAHNLAFGHSRPTANRILSLIANLPIGIPFAITFKYYHLEHHRYQGDEKLDT 142 (320)
Q Consensus 63 ~~~w~~~~~~a~~l~~~~~~~~~~l~HE~~H~~~f~s~~~~~N~~~G~l~~~~~~~~~~~~~r~~H~~HH~~~n~~~~Dp 142 (320)
..+|+..++.+++.|..+ .++++++|||+|++++++ +++|+++|.+++.+++.|+. +||..|+.||+++|++++|+
T Consensus 27 ~~~~~~~~~~~~~~g~~~-~~l~~l~He~~H~~~~~~--~~~N~~~g~~~~~~~~~p~~-~w~~~H~~HH~~~~~~~~D~ 102 (222)
T cd03507 27 LLSWWLWPLYWIVQGLFL-TGLFVLGHDCGHGSFSDN--RRLNDIVGHILHSPLLVPYH-SWRISHNRHHAHTGNLEGDE 102 (222)
T ss_pred hhhHHHHHHHHHHHHHHH-HHHHHHhhccCCcccccc--hhHHHHHHHHHHHHHhCChH-HHHHHHHHHHhccCCCCCCC
Confidence 356666555555556555 889999999999999998 55999999999999999999 79999999999999999999
Q ss_pred Ccch
Q psy10886 143 DIPT 146 (320)
Q Consensus 143 D~~~ 146 (320)
|..+
T Consensus 103 ~~~p 106 (222)
T cd03507 103 VWVP 106 (222)
T ss_pred cccC
Confidence 9643
No 18
>KOG4232|consensus
Probab=99.92 E-value=5.4e-24 Score=195.92 Aligned_cols=107 Identities=22% Similarity=0.226 Sum_probs=81.1
Q ss_pred HhhhhcCCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcchHHHHHHHH-
Q psy10886 33 IKKLFGSDPKFKYIVLSMVLVQFVSMYFLRNVSWPVLLTVAYCFGGVINHSLMLSIHEMAHNLAFGHSRPTANRILSLI- 111 (320)
Q Consensus 33 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~a~~l~~~~~~~~~~l~HE~~H~~~f~s~~~~~N~~~G~l- 111 (320)
-+++++.++..++.....+.+..++++... |...+++++++|..+.+..+ ++||.+|.+++|+++ +|+++..+
T Consensus 110 ~~gl~~~~~~ffl~~~l~~i~~~~~a~~~i---~~~~l~~a~Ll~~a~~Qs~~-l~Hd~gH~~i~~~~~--wN~~~~~fv 183 (430)
T KOG4232|consen 110 DMGLMDLNKTFFLHLLLLIILYLVLAWLLI---YLLSLISAVLLGLAWAQSGW-LQHDYGHLSIFKNSK--WNHLAQKFV 183 (430)
T ss_pred hcCCCcchHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-Hhccccccccccccc--HHHHHHHHH
Confidence 467788888776655554444333333221 22246678888888855555 499999999999866 99999965
Q ss_pred hccccccccchhhhHHhHHhhhhcCCCCCCCCcch
Q psy10886 112 ANLPIGIPFAITFKYYHLEHHRYQGDEKLDTDIPT 146 (320)
Q Consensus 112 ~~~~~~~~~~~~~r~~H~~HH~~~n~~~~DpD~~~ 146 (320)
.+...|.|.+ ||+..|++||+++|..++|||+..
T Consensus 184 ~n~L~G~sa~-WW~~~H~~HHa~pN~~~~DpDi~~ 217 (430)
T KOG4232|consen 184 GNHLKGFSAA-WWKSHHNQHHAAPNSLDKDPDIDF 217 (430)
T ss_pred hhhcccccHH-HHHHHHhhhhccCccCCCCccccc
Confidence 7899999999 899999999999999999999753
No 19
>cd03512 Alkane-hydroxylase Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases. The alk genes in Pseudomonas oleovorans encode conversion of alkanes to acyl CoA. The alkane omega-hydroxylase (AlkB) system is responsible for the initial oxidation of inactivated alkanes. It is a three-component system comprising a soluble NADH-rubredoxin reductase (AlkT), a soluble rubredoxin (AlkG), and the integral membrane oxygenase (AlkB). AlkB utilizes the oxygen rebound mechanism to hydroxylate alkanes. This mechanism involves homolytic cleavage of the C-H bond by an electrophilic metal-oxo intermediate to generate a substrate-based radical. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. The active
Probab=99.86 E-value=4.3e-21 Score=176.93 Aligned_cols=202 Identities=18% Similarity=0.200 Sum_probs=119.8
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcchHHHHHHHHhccccccccchhhhHHhH-HhhhhcCCCCCC
Q psy10886 63 NVSWPVLLTVAYCFGGVINHSLMLSIHEMAHNLAFGHSRPTANRILSLIANLPIGIPFAITFKYYHL-EHHRYQGDEKLD 141 (320)
Q Consensus 63 ~~~w~~~~~~a~~l~~~~~~~~~~l~HE~~H~~~f~s~~~~~N~~~G~l~~~~~~~~~~~~~r~~H~-~HH~~~n~~~~D 141 (320)
..+|+..+.+++.+|..........+||++| |+ +++|+++|.++..+. ++. .|+..|+ .||++++++ +|
T Consensus 66 ~~~~~~~~~~~~~~G~~~g~i~~~~aHel~H----r~--~~lnr~lg~~~~~~~--~~~-~~~~~H~~~HH~~v~tp-~D 135 (314)
T cd03512 66 DLSALEKVGLILSLGLLSGVIGINTAHELIH----RR--SRLERWLGKLLLASL--LYG-HFAIEHVRGHHRYVATP-ED 135 (314)
T ss_pred CCcHHHHHHHHHHHHHHHHHhhHHHHHhccC----CC--ChHHHHHHHHHHHHh--ccc-ceeeeecccCCCCCCCC-CC
Confidence 5677766666666666553344566888888 44 449999998764443 465 4788886 899999997 59
Q ss_pred CCcchhhHHHHhhhhhHHHHHHHHHHHHH-HhhccccCCCCc--cHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy10886 142 TDIPTYMEARLFCTTFGKFIWVCLQPFFY-AFRPIFTYPKAP--TALE-LFNTVVQISFDVFICYFLGGRMLSYMLLGSL 217 (320)
Q Consensus 142 pD~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~l~~~~g~~~l~~~ll~~~ 217 (320)
||.....+. ++....+. +...++.... ..+.+..+.++. .+.+ +..++.++++.++.+.+.|+..+.+++++.+
T Consensus 136 P~tar~ge~-~y~f~~r~-~~g~~~~aw~~e~~rl~~~g~~~~~~~n~~l~~~~~~~a~~~~~~~~~g~~~l~~~l~~~~ 213 (314)
T cd03512 136 PATARRGES-FYRFLPRA-LVGSFRSAWKLEKKRLRRKGRSPWSPRNEVLRYLALAVALLALAAALGGLAGLLFLLIQAF 213 (314)
T ss_pred ccccccCcc-HHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 997643221 11111111 1111111110 011111111111 1112 1223344444444555667888888888877
Q ss_pred HhhcccccceeeeccccccCCC-----cc-----ccccc---ccchhhhccccccccccCCCCCCCCChHHHHH
Q psy10886 218 MAMGLHPVAGHFVSEHYMFKKG-----YE-----TYSYY---GPLNWITFNVGYHNEHHDFPAVPGSRLPMVKK 278 (320)
Q Consensus 218 ~~~~~~~~~~~~~~eH~~~~~~-----~~-----t~s~~---~~~~~l~~n~~yH~eHHlfP~vP~~~Lp~~~~ 278 (320)
++..+..+ .++.||+++... +. .-|++ ...||+.+|++||.+||.+|++|++.|+...+
T Consensus 214 ~g~~~l~~--~nY~EHyGL~r~~~~~gr~e~~~~~hSWNs~~~~~n~l~~nl~rHsdHH~~p~~~y~~L~~~~~ 285 (314)
T cd03512 214 YAKSLLEL--VNYIEHYGLLRKKLANGRYEPVGPRHSWNSNHIVSNLLLFNLQRHSDHHAHPTRPYQALRPFPE 285 (314)
T ss_pred HHHHHHHH--HHHHHhcCCccccCCCCccccCCCccCcCcCcHHHHHHHHhcchhhhhccCCCCchhhccCCcc
Confidence 77544322 478899997522 11 12443 35789999999999999999999999998765
No 20
>cd01060 Membrane-FADS-like The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane hydroxylases, beta carotene ketolases (CrtW-like), hydroxylases (CrtR-like), and other related proteins. They are present in all groups of organisms with the exception of archaea. Membrane FADSs are non-heme, iron-containing, oxygen-dependent enzymes involved in regioselective introduction of double bonds in fatty acyl aliphatic chains. They play an important role in the maintenance of the proper structure and functioning of biological membranes. Alkane hydroxylases are bacterial, integral-membrane di-iron enzymes that share a requirement for iron and oxygen for activity similar to that of membrane FADSs, and are involved in the initial oxidation of inactivated alkanes. Beta-carotene ketolase and beta-carotene hydroxylase are carotenoid biosynthetic enzymes for astaxanthin and zeaxanthin, respectively. This superfamily domain has extensive hydrophobic regions that would
Probab=99.71 E-value=1.5e-17 Score=132.55 Aligned_cols=60 Identities=28% Similarity=0.456 Sum_probs=53.6
Q ss_pred HHHHHHhhcccccccCCCcchHHHHHHHHhccccccccchhhhHHhHHhhhhcCCCCCCCCcc
Q psy10886 83 SLMLSIHEMAHNLAFGHSRPTANRILSLIANLPIGIPFAITFKYYHLEHHRYQGDEKLDTDIP 145 (320)
Q Consensus 83 ~~~~l~HE~~H~~~f~s~~~~~N~~~G~l~~~~~~~~~~~~~r~~H~~HH~~~n~~~~DpD~~ 145 (320)
++..++|||+|++++++ +++|++++.+++.+.+.|+. .|+..|+.||++++++++|||..
T Consensus 14 ~~~~~~H~~~H~~~~~~--~~~n~~~~~~~~~~~~~~~~-~~~~~H~~HH~~~~~~~~D~~~~ 73 (122)
T cd01060 14 GLTVLAHELGHRSFFRS--RWLNRLLGALLGLALGGSYG-WWRRSHRRHHRYTNTPGKDPDSA 73 (122)
T ss_pred HHHHHHHHHhhhhhhcc--ccHHHHHHHHHHHHHcCCHH-HHHHHHHHHhcCcCCCCCCCccc
Confidence 56678999999999987 45999999887778999998 79999999999999998899955
No 21
>PF08557 Lipid_DES: Sphingolipid Delta4-desaturase (DES); InterPro: IPR013866 Sphingolipids are important membrane signalling molecules involved in many different cellular functions in eukaryotes. Sphingolipid delta 4-desaturase catalyses the formation of (E)-sphing-4-enine []. Some proteins in this entry have bifunctional delta 4-desaturase/C-4-hydroxylase activity. Delta 4-desaturated sphingolipids may play a role in early signalling required for entry into meiotic and spermatid differentiation pathways during Drosophila spermatogenesis []. This small protein associates with FA_desaturase IPR005804 from INTERPRO and appears to be specific to sphingolipid delta 4-desaturase. ; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=99.34 E-value=8.6e-13 Score=81.25 Aligned_cols=38 Identities=82% Similarity=1.295 Sum_probs=36.5
Q ss_pred CCCCcceecCCCCCChhHhHHHHhhChHHhhhhcCCCc
Q psy10886 5 VSRTDFEWTYTEEPHASRRKEILKKYPEIKKLFGSDPK 42 (320)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 42 (320)
++++||+|++.||||..||++|++++||+++||++||.
T Consensus 1 v~~~DF~W~~~~ePH~~RRk~IL~k~PeIk~L~G~dp~ 38 (39)
T PF08557_consen 1 VSRNDFEWVYTDEPHASRRKEILKKHPEIKKLMGPDPL 38 (39)
T ss_pred CCccccEEeCCCCccHHHHHHHHHhChHHHHHhCCCCC
Confidence 57999999999999999999999999999999999996
No 22
>PLN02220 delta-9 acyl-lipid desaturase
Probab=99.01 E-value=9.3e-09 Score=93.80 Aligned_cols=60 Identities=18% Similarity=0.179 Sum_probs=40.2
Q ss_pred HHHHHHhh-cccccccCCCcchHHHHHHHHhccccccccchhhhHHhHHhhhhcCCCCCCCCcch
Q psy10886 83 SLMLSIHE-MAHNLAFGHSRPTANRILSLIANLPIGIPFAITFKYYHLEHHRYQGDEKLDTDIPT 146 (320)
Q Consensus 83 ~~~~l~HE-~~H~~~f~s~~~~~N~~~G~l~~~~~~~~~~~~~r~~H~~HH~~~n~~~~DpD~~~ 146 (320)
++.+-.|- .+|.++--+ +++..++..+.++....|.- +|-..|..||+++.+++ ||-.+.
T Consensus 71 GiT~GyHRl~sHrsfka~--~~l~~~la~~g~~a~Qgs~~-~Wv~~HR~HH~~sDt~~-DPHsp~ 131 (299)
T PLN02220 71 SITFSYHRNLAHRSFKLP--KWLEYPFAYSALFALQGDPI-DWVSTHRFHHQFTDSDR-DPHSPI 131 (299)
T ss_pred HHHHHHHHHHHhhcCcCc--HHHHHHHHHHHHHHhCCCHH-HHHHHHHHHHHhcCCCC-Cccccc
Confidence 33344566 456665544 57887777654333333343 69999999999999885 998774
No 23
>COG1398 OLE1 Fatty-acid desaturase [Lipid metabolism]
Probab=98.98 E-value=3.6e-09 Score=93.06 Aligned_cols=179 Identities=18% Similarity=0.185 Sum_probs=87.4
Q ss_pred HHHHhhcccccccCCCcchHHHHHHHHhccccccccchhhhHHhHHhhhhcCCCCCCCCcchhhHHHHhhhhhHHHHHHH
Q psy10886 85 MLSIHEMAHNLAFGHSRPTANRILSLIANLPIGIPFAITFKYYHLEHHRYQGDEKLDTDIPTYMEARLFCTTFGKFIWVC 164 (320)
Q Consensus 85 ~~l~HE~~H~~~f~s~~~~~N~~~G~l~~~~~~~~~~~~~r~~H~~HH~~~n~~~~DpD~~~~~~~~~~~~~~~~~~~~~ 164 (320)
.+-.|-|.-+..++-. +++..++....++....|.- +|-..|..||+++.++ +||..+....- ++ + -+-|..
T Consensus 63 t~G~HRl~sHRa~~~~-k~Le~~la~~g~l~~~G~~~-~W~~~HR~HHr~tDTd-~DPh~~~~kGf-w~-s---higWm~ 134 (289)
T COG1398 63 TLGLHRLWSHRAFKAH-KWLEYVLAFWGALTTQGPAI-EWVGIHRKHHRKTDTD-QDPHYDSFKGF-WW-S---HIGWML 134 (289)
T ss_pred eeehhhhhhhhhcccc-hHHHHHHHHHHHhhcCCCce-eHHHHHHHhhcccCCC-CCCCccccccc-hh-h---hcceee
Confidence 3445887544444432 67888887766666667776 7999999999999777 49943221000 00 0 000111
Q ss_pred HHHHHHHhhc---cccCCCCccHHHH----HHHHHHHHHH-HHHHHHhhhHHHHHHHHHH-HHhhcccccceeeeccccc
Q psy10886 165 LQPFFYAFRP---IFTYPKAPTALEL----FNTVVQISFD-VFICYFLGGRMLSYMLLGS-LMAMGLHPVAGHFVSEHYM 235 (320)
Q Consensus 165 ~~~l~~~~~~---~~~~~~~~~~~~~----~~~~~~~~~~-~~l~~~~g~~~l~~~ll~~-~~~~~~~~~~~~~~~eH~~ 235 (320)
+.+-=..-++ .....-+..+.+. .....++++. .+.+++.|+..++|..+.. ++ ..+.....+..-|+.
T Consensus 135 ~~~~~~~~r~~~~~~~kd~~~~~~~r~~~~~~~l~~i~~~l~~~~~~gg~~gl~~~gv~r~~~--~~hat~~VNsl~H~~ 212 (289)
T COG1398 135 LYSAEAKDRETIQKLGKDIPLDWQHRNLYLIALLMQIVLPLFIGYALGGWLGLIWGGVQRLVL--VQHATWCVNSLGHYI 212 (289)
T ss_pred ecchhhcChhHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH--HHHHHHHHhhhhhhh
Confidence 0000000000 0000000111111 1122233333 2223345565555443221 11 112111123445553
Q ss_pred ----cCCCcccccccccchhhhccccccccccCCCCCCCCChH
Q psy10886 236 ----FKKGYETYSYYGPLNWITFNVGYHNEHHDFPAVPGSRLP 274 (320)
Q Consensus 236 ----~~~~~~t~s~~~~~~~l~~n~~yH~eHHlfP~vP~~~Lp 274 (320)
++.+++.++ ..++..+++|.++|..||.||+.-...+.
T Consensus 213 Gyr~fd~~d~arN-~ww~al~t~GEgwHNnHHafp~~ar~g~k 254 (289)
T COG1398 213 GYRPFDCRDTARN-CWWVALVTFGEGWHNNHHAFPNSARNGLK 254 (289)
T ss_pred cccccCCCCCccc-eeEEEEeecccccccccccCcchhhcCce
Confidence 334445555 35678899999999999999987555443
No 24
>KOG1600|consensus
Probab=98.20 E-value=5.7e-06 Score=74.68 Aligned_cols=79 Identities=18% Similarity=0.212 Sum_probs=49.5
Q ss_pred hcCchhHHHHHHHHHHHHHHHHHHHHHhh-cccccccCCCcchHHHHHHHH-hccccccccchhhhHHhHHhhhhcCCCC
Q psy10886 62 RNVSWPVLLTVAYCFGGVINHSLMLSIHE-MAHNLAFGHSRPTANRILSLI-ANLPIGIPFAITFKYYHLEHHRYQGDEK 139 (320)
Q Consensus 62 ~~~~w~~~~~~a~~l~~~~~~~~~~l~HE-~~H~~~f~s~~~~~N~~~G~l-~~~~~~~~~~~~~r~~H~~HH~~~n~~~ 139 (320)
....|.+.+. ++++..+-..++-.=.|- -+|.++-.+ +++..++... +....|-++ +|-+.|..||++|.++
T Consensus 62 ~~~~w~t~~~-~~~l~~v~glgITag~HRlwsHRSyKa~--kpLr~fla~~~~~A~Qg~~~--~WvrdHR~HHk~tdTD- 135 (321)
T KOG1600|consen 62 FSAKWETLLF-AFFLYAVGGLGITAGYHRLWSHRSYKAP--KPLRYFLAYCNTLAFQGDII--DWVRDHRVHHKFTDTD- 135 (321)
T ss_pred ccchHHHHHH-HHHHHHHhhceeeeehhhhcccccccCC--ccHHHHHHHHHHHhccCChh--HHHhhhhhhccccccC-
Confidence 3456765433 333332221222222455 467776655 5688888765 334456666 5999999999999998
Q ss_pred CCCCcch
Q psy10886 140 LDTDIPT 146 (320)
Q Consensus 140 ~DpD~~~ 146 (320)
+||-.+.
T Consensus 136 ~DPhn~~ 142 (321)
T KOG1600|consen 136 ADPHNPR 142 (321)
T ss_pred CCCCCcc
Confidence 4998764
No 25
>cd03505 Delta9-FADS-like The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide range of bacteria. These enzymes play essential roles in fatty acid metabolism and the regulation of cell membrane fluidity. Acyl-CoA desaturases are the enzymes involved in the CoA-bound desaturation of fatty acids. Mammalian stearoyl-CoA delta-9 desaturase is a key enzyme in the biosynthesis of monounsaturated fatty acids, and in yeast, the delta-9 acyl-CoA desaturase (OLE1) reaction accounts for all de nova unsaturated fatty acid production in Saccharomyces cerevisiae. These non-heme, iron-containing, ER membrane-bound enzymes are part of a three-component enzyme system involving cytochrome b5, cytochrome b5 reductase, and the delta-9 fatty acid desaturase. This complex catalyzes the NADH- and oxygen-dependent i
Probab=98.10 E-value=2e-05 Score=66.67 Aligned_cols=55 Identities=22% Similarity=0.220 Sum_probs=39.8
Q ss_pred Hhh-cccccccCCCcchHHHHHHHHhccccccccchhhhHHhHHhhhhcCCCCCCCCcch
Q psy10886 88 IHE-MAHNLAFGHSRPTANRILSLIANLPIGIPFAITFKYYHLEHHRYQGDEKLDTDIPT 146 (320)
Q Consensus 88 ~HE-~~H~~~f~s~~~~~N~~~G~l~~~~~~~~~~~~~r~~H~~HH~~~n~~~~DpD~~~ 146 (320)
.|- .+|.++-.+ +++..++..++.+....|.. +|...|..||+++.+++ ||-.+.
T Consensus 23 ~HRl~aHrsfk~~--~~l~~~l~~~g~~a~qgs~~-~W~~~HR~HH~~sDt~~-DPhs~~ 78 (178)
T cd03505 23 YHRLWAHRSFKAP--KPLRIFLAILGSLAGQGSPL-WWVADHRLHHRYSDTDG-DPHSPK 78 (178)
T ss_pred HHHHHhhccCcCc--HHHHHHHHHHHHHHcCcCHH-HHHHHHHHhhcccCCCC-CCCCcc
Confidence 454 457776655 57888877765544444554 79999999999999984 998764
No 26
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=71.12 E-value=24 Score=31.06 Aligned_cols=57 Identities=26% Similarity=0.427 Sum_probs=31.0
Q ss_pred hHhHHHHhhChHHhhhhcCCCchHHHHHHHHHHHHHHHHH--HhcCchhHHHHHHHHHHHHH
Q psy10886 21 SRRKEILKKYPEIKKLFGSDPKFKYIVLSMVLVQFVSMYF--LRNVSWPVLLTVAYCFGGVI 80 (320)
Q Consensus 21 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~w~~~~~~a~~l~~~~ 80 (320)
.|.++|.+.|.--+ +.||+..|+.++..++.++++++ +...+|+.+++.++++|...
T Consensus 8 ~~~~Qi~q~y~~tr---k~dp~l~~~ml~a~l~~~~v~v~ig~l~~~~~~~~i~gi~~g~l~ 66 (224)
T PF13829_consen 8 GRRKQIWQAYKMTR---KEDPKLPWLMLGAFLGPIAVFVLIGLLFGSWWYWLIIGILLGLLA 66 (224)
T ss_pred hHHHHHHHHHHHHH---HHCcchHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 35566666654222 45677666655544443333222 23346776666677776654
No 27
>COG1398 OLE1 Fatty-acid desaturase [Lipid metabolism]
Probab=33.80 E-value=73 Score=28.93 Aligned_cols=15 Identities=20% Similarity=0.558 Sum_probs=12.4
Q ss_pred hHHhHHhhhhcCCCC
Q psy10886 125 KYYHLEHHRYQGDEK 139 (320)
Q Consensus 125 r~~H~~HH~~~n~~~ 139 (320)
...||.||+++|+..
T Consensus 236 EgwHNnHHafp~~ar 250 (289)
T COG1398 236 EGWHNNHHAFPNSAR 250 (289)
T ss_pred cccccccccCcchhh
Confidence 457999999999774
No 28
>PF12427 DUF3665: Branched-chain amino acid aminotransferase ; InterPro: IPR024614 This uncharacterised domain is found in the N-terminal region of branched-chain amino acid aminotransferase II proteins in Corynebacterium. It is typically between 23 and 35 amino acids in length and contains a conserved TRT sequence motif.
Probab=33.09 E-value=48 Score=17.79 Aligned_cols=19 Identities=53% Similarity=0.714 Sum_probs=13.3
Q ss_pred cceecCCCCCC-hhHhHHHH
Q psy10886 9 DFEWTYTEEPH-ASRRKEIL 27 (320)
Q Consensus 9 ~~~~~~~~~~~-~~~~~~~~ 27 (320)
||-++++|+|. .+|.++|+
T Consensus 3 ~yTiTRT~nPTs~~~L~eIL 22 (23)
T PF12427_consen 3 DYTITRTENPTSPERLKEIL 22 (23)
T ss_pred ceeEeccCCCCCHHHHHHHh
Confidence 68889998875 44556664
No 29
>cd03513 CrtW_beta-carotene-ketolase Beta-carotene ketolase/oxygenase (CrtW, also known as CrtO), the carotenoid astaxanthin biosynthetic enzyme, initially catalyzes the addition of two keto groups to carbons C4 and C4' of beta-carotene. Carotenoids are important natural pigments produced by many microorganisms and plants. Astaxanthin is reported to be an antioxidant, an anti-cancer agent, and an immune system stimulant. A number of bacteria and green algae can convert beta-carotene into astaxanthin by using several ketocarotenoids as intermediates and CrtW and a beta-carotene hydroxylase (CrtZ). CrtW initially converts beta-carotene to canthaxanthin via echinenone, and CrtZ initially mediates the conversion of beta-carotene to zeaxanthin via beta-cryptoxanthin. After a few more intermediates are formed, CrtW and CrtZ act in combination to produce astaxanthin. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. Th
Probab=30.27 E-value=1e+02 Score=27.20 Aligned_cols=12 Identities=42% Similarity=0.642 Sum_probs=10.7
Q ss_pred HhHHhhhhcCCC
Q psy10886 127 YHLEHHRYQGDE 138 (320)
Q Consensus 127 ~H~~HH~~~n~~ 138 (320)
.|..||.++..|
T Consensus 206 yH~eHH~fP~~P 217 (225)
T cd03513 206 YHHEHHLSPSTP 217 (225)
T ss_pred cchhhccCCCCC
Confidence 699999998877
No 30
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=28.70 E-value=2.9e+02 Score=23.16 Aligned_cols=51 Identities=14% Similarity=0.253 Sum_probs=23.4
Q ss_pred hChHHhhhhcCCCchHHHHHHHHHHHHHHHHH-HhcCchhHHHHHHHHHHHHH
Q psy10886 29 KYPEIKKLFGSDPKFKYIVLSMVLVQFVSMYF-LRNVSWPVLLTVAYCFGGVI 80 (320)
Q Consensus 29 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~w~~~~~~a~~l~~~~ 80 (320)
..++++++.+..|....+...+..+..++++. +.+.+|... +++.++|...
T Consensus 87 a~~~L~~I~~~~~~y~~~~~~l~~~l~~~~fa~lfgg~~~~~-~~a~i~g~~~ 138 (193)
T PF06738_consen 87 AIERLDEIDREPPRYPPWLVILAAGLASAAFALLFGGSWIDM-IVAFILGLLV 138 (193)
T ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHH
Confidence 33456666554433322222223333333433 356778764 4455555543
No 31
>cd03509 DesA_FADS-like Fatty acid desaturase protein family subgroup, a delta-12 acyl-lipid desaturase-like, DesA-like, yet uncharacterized subgroup of membrane fatty acid desaturase proteins found in alpha-, beta-, and gamma-proteobacteria. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=24.13 E-value=2.4e+02 Score=25.71 Aligned_cols=16 Identities=19% Similarity=0.098 Sum_probs=12.4
Q ss_pred hhHHhHHhhhhcCCCC
Q psy10886 124 FKYYHLEHHRYQGDEK 139 (320)
Q Consensus 124 ~r~~H~~HH~~~n~~~ 139 (320)
....|..||.++..|-
T Consensus 228 ninyH~~HH~~P~vP~ 243 (288)
T cd03509 228 NNNLHVVHHDLPTLPW 243 (288)
T ss_pred cCCchHhhcCCCCCCc
Confidence 3457999999988774
No 32
>COG5282 Uncharacterized conserved protein [Function unknown]
Probab=20.34 E-value=73 Score=29.32 Aligned_cols=40 Identities=20% Similarity=0.389 Sum_probs=33.1
Q ss_pred HHHHHHHhhcccccccCCCcchHHHHHHHHhccccccccch
Q psy10886 82 HSLMLSIHEMAHNLAFGHSRPTANRILSLIANLPIGIPFAI 122 (320)
Q Consensus 82 ~~~~~l~HE~~H~~~f~s~~~~~N~~~G~l~~~~~~~~~~~ 122 (320)
...|+..||+.|..+|+.- +|+.+.++....+.++.....
T Consensus 168 ~~~~ia~~Evth~rlF~~v-pWLs~~ls~v~~ya~g~~iD~ 207 (359)
T COG5282 168 FRTWIATHEVTHHRLFSAV-PWLSSYLSAVLAYAVGMKIDM 207 (359)
T ss_pred HHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHhccCccch
Confidence 4568889999999999853 899999998777778877774
Done!