Query psy10886
Match_columns 320
No_of_seqs 170 out of 1604
Neff 8.4
Searched_HMMs 29240
Date Fri Aug 16 20:58:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10886.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10886hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cqb_A Probable protease HTPX 16.0 37 0.0013 24.8 0.4 14 82-95 82-95 (107)
2 3b4r_A Putative zinc metallopr 12.6 1.5E+02 0.0051 24.7 3.4 14 85-98 50-63 (224)
3 1v54_M VIIIB, IX, cytochrome C 8.7 3.7E+02 0.013 16.5 3.2 8 82-89 29-36 (46)
4 2dod_A Transcription elongatio 7.3 4.1E+02 0.014 18.3 3.5 24 286-309 31-54 (82)
5 3c37_A Peptidase, M48 family; 6.9 1.1E+02 0.0039 25.8 0.4 15 82-96 99-113 (253)
6 2jsd_A Matrix metalloproteinas 5.8 1.6E+02 0.0053 22.8 0.6 16 84-99 109-124 (160)
7 2og0_A Excisionase; protein-DN 5.4 2.4E+02 0.0083 17.6 1.2 26 295-320 19-51 (52)
8 1e52_A Excinuclease ABC subuni 5.3 3.6E+02 0.012 17.6 2.1 16 259-274 3-18 (63)
9 1atl_A Atrolysin C; metalloend 5.1 2.1E+02 0.0071 23.1 1.0 13 85-97 138-150 (202)
10 2w15_A Zinc metalloproteinase 5.0 1.9E+02 0.0065 23.3 0.6 13 85-97 138-150 (202)
No 1
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Probab=15.97 E-value=37 Score=24.83 Aligned_cols=14 Identities=21% Similarity=0.268 Sum_probs=11.4
Q ss_pred HHHHHHHhhccccc
Q psy10886 82 HSLMLSIHEMAHNL 95 (320)
Q Consensus 82 ~~~~~l~HE~~H~~ 95 (320)
...++++||.+|..
T Consensus 82 El~aVlaHElgH~~ 95 (107)
T 3cqb_A 82 EAEAVLAHEVSHIA 95 (107)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45678899999985
No 2
>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii}
Probab=12.59 E-value=1.5e+02 Score=24.70 Aligned_cols=14 Identities=21% Similarity=0.446 Sum_probs=10.9
Q ss_pred HHHHhhcccccccC
Q psy10886 85 MLSIHEMAHNLAFG 98 (320)
Q Consensus 85 ~~l~HE~~H~~~f~ 98 (320)
.++.||.+|.-..+
T Consensus 50 ~v~~HElgH~~~A~ 63 (224)
T 3b4r_A 50 SVVLHELGHSYVAK 63 (224)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45689999998763
No 3
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=8.72 E-value=3.7e+02 Score=16.45 Aligned_cols=8 Identities=13% Similarity=-0.014 Sum_probs=3.3
Q ss_pred HHHHHHHh
Q psy10886 82 HSLMLSIH 89 (320)
Q Consensus 82 ~~~~~l~H 89 (320)
...|++.|
T Consensus 29 PagWVLsh 36 (46)
T 1v54_M 29 PAGWVLYH 36 (46)
T ss_dssp HHHHHHHT
T ss_pred hHHHHHHH
Confidence 34444443
No 4
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=7.32 E-value=4.1e+02 Score=18.26 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=20.1
Q ss_pred CCCCcccHHHHHHHhhhCCCCCcc
Q psy10886 286 NLPQHHSWSAVLYDFVMDPDIGPY 309 (320)
Q Consensus 286 ~~~~~~~y~~~~~~~~~~~~~~~~ 309 (320)
+++-..+|-+++...+.||.+..-
T Consensus 31 ~V~p~~tWe~~~~~i~~DpRY~aL 54 (82)
T 2dod_A 31 GVSAFSTWEKELHKIVFDPRYLLL 54 (82)
T ss_dssp TCCSSSCHHHHHHHHHTCSGGGTS
T ss_pred CcCCCCCHHHHHHHHccCCccccC
Confidence 666677999999999999998753
No 5
>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics, protein structure initiative, northeast structural genomics consortium; 1.70A {Geobacter sulfurreducens pca}
Probab=6.93 E-value=1.1e+02 Score=25.83 Aligned_cols=15 Identities=27% Similarity=0.317 Sum_probs=12.1
Q ss_pred HHHHHHHhhcccccc
Q psy10886 82 HSLMLSIHEMAHNLA 96 (320)
Q Consensus 82 ~~~~~l~HE~~H~~~ 96 (320)
...++++||.+|...
T Consensus 99 ELaaVLaHElgH~~~ 113 (253)
T 3c37_A 99 ELAGVLAHEINHAVA 113 (253)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHC
Confidence 456789999999963
No 6
>2jsd_A Matrix metalloproteinase-20; MMP-NNGH, structural genomics, structural proteomics in europe, spine, spine-2, spine2-complexes, hydrolase; HET: NGH; NMR {Homo sapiens}
Probab=5.75 E-value=1.6e+02 Score=22.79 Aligned_cols=16 Identities=31% Similarity=0.706 Sum_probs=11.8
Q ss_pred HHHHHhhcccccccCC
Q psy10886 84 LMLSIHEMAHNLAFGH 99 (320)
Q Consensus 84 ~~~l~HE~~H~~~f~s 99 (320)
..++.||.+|.-=+..
T Consensus 109 ~~v~~HEiGHaLGL~H 124 (160)
T 2jsd_A 109 FTVAAHEFGHALGLAH 124 (160)
T ss_dssp HHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhHhhhcCCC
Confidence 3567899999876653
No 7
>2og0_A Excisionase; protein-DNA complex, DNA architectural protein, 'winged'HELI protein, phage excision; 1.90A {Enterobacteria phage lambda} SCOP: a.6.1.7 PDB: 1lx8_A 1rh6_A 2ief_A
Probab=5.44 E-value=2.4e+02 Score=17.64 Aligned_cols=26 Identities=15% Similarity=0.203 Sum_probs=18.6
Q ss_pred HHHHHhhhCCCC-------CccccccccCCCCC
Q psy10886 295 AVLYDFVMDPDI-------GPYARMKRKHRGLD 320 (320)
Q Consensus 295 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 320 (320)
++++.++-+..+ |-.+|++++++..|
T Consensus 19 ~Tl~r~ar~G~I~Pp~~KvGr~wrv~~~a~~v~ 51 (52)
T 2og0_A 19 ETVRRWVRESRIFPPPVKDGREYLFHESAVKVD 51 (52)
T ss_dssp HHHHHHHHTTCEESCCEEETTEEEEETTCEECC
T ss_pred HHHHHHHHCCCCCCcccccCCEEEEcccceeeC
Confidence 567777765544 77889999887654
No 8
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=5.27 E-value=3.6e+02 Score=17.60 Aligned_cols=16 Identities=25% Similarity=0.312 Sum_probs=8.6
Q ss_pred cccccCCCCCCCCChH
Q psy10886 259 HNEHHDFPAVPGSRLP 274 (320)
Q Consensus 259 H~eHHlfP~vP~~~Lp 274 (320)
|.-||+-|..-+-.++
T Consensus 3 ~~~~~~~~~~~~~~ls 18 (63)
T 1e52_A 3 HHHHHLEPDNVPMDMS 18 (63)
T ss_dssp -----CCCTTSSCCSC
T ss_pred cccccCCcccchhhcC
Confidence 6678999988777754
No 9
>1atl_A Atrolysin C; metalloendopeptidase, hydrolase-hydrolase inhibitor complex; HET: 0QI; 1.80A {Crotalus atrox} SCOP: d.92.1.9 PDB: 1htd_A 1dth_A* 3aig_A* 2aig_P* 4aig_A* 1iag_A
Probab=5.09 E-value=2.1e+02 Score=23.08 Aligned_cols=13 Identities=38% Similarity=0.690 Sum_probs=9.3
Q ss_pred HHHHhhccccccc
Q psy10886 85 MLSIHEMAHNLAF 97 (320)
Q Consensus 85 ~~l~HE~~H~~~f 97 (320)
.+++||.||.--.
T Consensus 138 ~~~AHElGHnlG~ 150 (202)
T 1atl_A 138 VTMAHELGHNLGM 150 (202)
T ss_dssp HHHHHHHHHHTTC
T ss_pred EEehhhhccccCc
Confidence 3568999998543
No 10
>2w15_A Zinc metalloproteinase BAP1; hydrolase inhibitor complex, metal-binding, zinc-depending, metalloprotease, metalloproteinase/inhibitor complex; HET: WR2; 1.05A {Bothrops asper} PDB: 2w12_A* 2w13_A* 2w14_A* 1nd1_A 3gbo_A
Probab=4.97 E-value=1.9e+02 Score=23.31 Aligned_cols=13 Identities=38% Similarity=0.675 Sum_probs=9.3
Q ss_pred HHHHhhccccccc
Q psy10886 85 MLSIHEMAHNLAF 97 (320)
Q Consensus 85 ~~l~HE~~H~~~f 97 (320)
.+++||.||.--.
T Consensus 138 ~~~AHElGH~lG~ 150 (202)
T 2w15_A 138 VTMAHELGHNLGI 150 (202)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHhhhcCC
Confidence 3568999998543
Done!