RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10886
         (320 letters)



>d1x87a_ e.51.1.1 (A:) Urocanate hydratase HutU {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 545

 Score = 29.0 bits (65), Expect = 0.76
 Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 3/26 (11%)

Query: 143 DIPTYMEA---RLFCTTFGKFIWVCL 165
             P ++ A    LFC   G F WV L
Sbjct: 330 SFPGFVPAYIRPLFCEGKGPFRWVAL 355


>d1uwka_ e.51.1.1 (A:) Urocanate hydratase HutU {Pseudomonas putida
           [TaxId: 303]}
          Length = 554

 Score = 29.0 bits (65), Expect = 0.82
 Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 3/26 (11%)

Query: 143 DIPTYMEA---RLFCTTFGKFIWVCL 165
           D P ++ A    LFC   G F W  L
Sbjct: 338 DFPGFVPAYIRPLFCRGVGPFRWAAL 363


>d3cmna1 d.92.1.16 (A:43-391) Uncharacterized protein Caur0242
           {Chloroflexus aurantiacus [TaxId: 1108]}
          Length = 346

 Score = 28.8 bits (64), Expect = 1.0
 Identities = 7/36 (19%), Positives = 12/36 (33%)

Query: 83  SLMLSIHEMAHNLAFGHSRPTANRILSLIANLPIGI 118
            L +++HEM H   F            L+      +
Sbjct: 162 RLWITLHEMTHAFEFEAYPWVRTYFRELLEQNFALV 197


>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide
           transformylase PurT, N-domain {Escherichia coli [TaxId:
           562]}
          Length = 111

 Score = 25.2 bits (55), Expect = 5.0
 Identities = 11/90 (12%), Positives = 20/90 (22%), Gaps = 20/90 (22%)

Query: 203 FLGGRMLSYMLLGSLMAMGLH-------------PVAGHFVSEHYMFKKGYETYSYYGPL 249
            LG   L   +      +G+               VA      + +              
Sbjct: 16  LLGSGELGKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLDGDALRRVVELEKP 75

Query: 250 NWITFNVGYHN-------EHHDFPAVPGSR 272
           ++I   +           E      VP +R
Sbjct: 76  HYIVPEIEAIATDMLIQLEEEGLNVVPCAR 105


>d1c17m_ f.18.1.1 (M:) F1F0 ATP synthase subunit A {Escherichia coli
           [TaxId: 562]}
          Length = 171

 Score = 25.6 bits (56), Expect = 6.3
 Identities = 15/122 (12%), Positives = 35/122 (28%)

Query: 110 LIANLPIGIPFAITFKYYHLEHHRYQGDEKLDTDIPTYMEARLFCTTFGKFIWVCLQPFF 169
            + NL   +P  +                    D+   +   L       F  + ++   
Sbjct: 19  FLMNLMDLLPIDLLPYIAEHVLGLPALRVVPSADVNVTLSMALGVFILILFYSIKMKGIG 78

Query: 170 YAFRPIFTYPKAPTALELFNTVVQISFDVFICYFLGGRMLSYMLLGSLMAMGLHPVAGHF 229
              + +   P    A    N +++    +     LG R+   M  G L+ + +  +   +
Sbjct: 79  GFTKELTLQPFNHWAFIPVNLILEGVSLLSKPVSLGLRLFGNMYAGELIFILIAGLLPWW 138

Query: 230 VS 231
             
Sbjct: 139 SQ 140


>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 411

 Score = 26.2 bits (57), Expect = 6.7
 Identities = 7/38 (18%), Positives = 16/38 (42%), Gaps = 2/38 (5%)

Query: 24  KEILKKYPEIKKLFGSDPKFKYIVLS--MVLVQFVSMY 59
           K  + ++  +   +G D   K+  +S       F++ Y
Sbjct: 354 KLTIMEFESLMHTYGEDSGDKFAKISFFKKFADFINEY 391


>d1b25a1 a.110.1.1 (A:211-619) Formaldehyde ferredoxin
           oxidoreductase {Archaeon Pyrococcus furiosus [TaxId:
           2261]}
          Length = 409

 Score = 26.1 bits (57), Expect = 7.2
 Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 7/82 (8%)

Query: 214 LGSLMAMGLHPVAGHFVSEHYMFKKGYETYSYYGP-------LNWITFNVGYHNEHHDFP 266
           LG+L A G+  +A    +  +         S Y         L + T  +G H++     
Sbjct: 174 LGNLAAEGVKAMAEKLGTHDFAMHVKGLEVSGYNCYIYPAMALAYGTSAIGAHHKEAWVI 233

Query: 267 AVPGSRLPMVKKIASEYYDNLP 288
           A      P+  + A +    + 
Sbjct: 234 AWEIGTAPIEGEKAEKVEYKIS 255


>d2qapa1 c.1.10.1 (A:1-357) Fructose-1,6-bisphosphate aldolase
           {Trypanosome (Leishmania mexicana) [TaxId: 5665]}
          Length = 357

 Score = 25.8 bits (56), Expect = 8.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 98  GHSRPTANRILSLIANLPIGIPFAITFKY 126
           G S   A+  L+ I N P+  P+ ++F Y
Sbjct: 283 GLSEVQASEYLNAINNSPLPRPYFLSFSY 311


>d1zaia1 c.1.10.1 (A:1-363) Fructose-1,6-bisphosphate aldolase
           {Rabbit (Oryctolagus cuniculus), muscle isozyme [TaxId:
           9986]}
          Length = 363

 Score = 25.7 bits (56), Expect = 8.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 98  GHSRPTANRILSLIANLPIGIPFAITFKY 126
           G S   A+  L+ I   P+  P+A+TF Y
Sbjct: 273 GQSEEEASINLNAINKCPLLKPWALTFSY 301


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.142    0.460 

Gapped
Lambda     K      H
   0.267   0.0633    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,309,229
Number of extensions: 62993
Number of successful extensions: 254
Number of sequences better than 10.0: 1
Number of HSP's gapped: 254
Number of HSP's successfully gapped: 12
Length of query: 320
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 235
Effective length of database: 1,240,546
Effective search space: 291528310
Effective search space used: 291528310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.4 bits)