BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10887
(222 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ISM|A Chain A, Crystal Structure Of The EndogENDOGI COMPLEX: MECHANISM OF
ENDOG Inhibition
pdb|3ISM|B Chain B, Crystal Structure Of The EndogENDOGI COMPLEX: MECHANISM OF
ENDOG Inhibition
Length = 267
Score = 290 bits (742), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 131/204 (64%), Positives = 163/204 (79%)
Query: 1 MKYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIH 60
MKYGFP LD +RS D+VLSYDRRNR +WVFEHLT E+ A ++AV+RSK +F +D+SIH
Sbjct: 23 MKYGFPGLDHVRSHSDYVLSYDRRNRVPHWVFEHLTAESVAKNDAVDRSKCDFKQDESIH 82
Query: 61 EYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEK 120
+FR +N+DY+ SGYDRGH+AAAGNH+ +QKH D+TF LSN++PQVG GFNRD W LE
Sbjct: 83 PFFRSQNTDYRRSGYDRGHMAAAGNHRLHQKHCDETFYLSNMAPQVGQGFNRDAWNTLEA 142
Query: 121 HSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGK 180
H R+L K Y NVYVCTGPLYLP K +GK YV YEVIG + VAVPTHF+K+IV E+ + K
Sbjct: 143 HVRRLTKTYSNVYVCTGPLYLPHKEDDGKSYVKYEVIGANTVAVPTHFYKVIVGESADHK 202
Query: 181 LVMENYVLPNAVISDSTPLTSFMV 204
L ME+YV+PN VIS+ TP++ F V
Sbjct: 203 LHMESYVMPNQVISNDTPISVFQV 226
>pdb|3S5B|A Chain A, Crystal Structure Of Ced-3 Protease Suppressor-6 (Cps-6)
From Caenorhabditis Elegans
pdb|3S5B|B Chain B, Crystal Structure Of Ced-3 Protease Suppressor-6 (Cps-6)
From Caenorhabditis Elegans
Length = 249
Score = 246 bits (628), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 113/204 (55%), Positives = 151/204 (74%)
Query: 1 MKYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIH 60
MK+G+P ++R+++DFVLSYD + RTA+WV EHLT E ++E V+R EF D +
Sbjct: 16 MKHGYPGFTNVRTYEDFVLSYDYKTRTAHWVCEHLTPERLKHAEGVDRKLCEFKPDITFP 75
Query: 61 EYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEK 120
+ F +N+DYK SG+DRGHLAAAGNH+ +Q +DQTF LSN+SPQVG GFNRDKW +LE
Sbjct: 76 QKFLSQNTDYKCSGFDRGHLAAAGNHRKSQLAVDQTFYLSNMSPQVGRGFNRDKWNDLEM 135
Query: 121 HSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGK 180
H R++ K+ N Y+ TGPLYLP +GKKY+ Y+VIGD+NVAVPTHFFK+ + E GK
Sbjct: 136 HCRRVAKKMINSYIITGPLYLPKLEGDGKKYIKYQVIGDNNVAVPTHFFKVALFEVTPGK 195
Query: 181 LVMENYVLPNAVISDSTPLTSFMV 204
+E+Y+LPNAVI D+ ++ F V
Sbjct: 196 FELESYILPNAVIEDTVEISKFHV 219
>pdb|4A1N|A Chain A, Human Mitochondrial Endo-Exonuclease
Length = 335
Score = 143 bits (361), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 80/208 (38%), Positives = 118/208 (56%), Gaps = 7/208 (3%)
Query: 2 KYGFP-SLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIH 60
++GFP + R + + LSYD+ R WV EH++K +R +F D +I
Sbjct: 24 QFGFPLTGTEARCYTNHALSYDQAKRVPRWVLEHISKSKIMGD--ADRKHCKFKPDPNIP 81
Query: 61 EYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEK 120
F N DY SG+ RGH+A AGN+K + K + +TF LSNI PQ N W +E
Sbjct: 82 PTFSAFNEDYVGSGWSRGHMAPAGNNKFSSKAMAETFYLSNIVPQ-DFDNNSGYWNRIEM 140
Query: 121 HSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENEN-- 178
+ R+L +++ +V+V +GPL LP +GKK V+Y+VIG+ NVAVP+H +K+I+A +
Sbjct: 141 YCRELTERFEDVWVVSGPLTLPQTRGDGKKIVSYQVIGEDNVAVPSHLYKVILARRSSVS 200
Query: 179 -GKLVMENYVLPNAVISDSTPLTSFMVS 205
L + +V+PN I LT F VS
Sbjct: 201 TEPLALGAFVVPNEAIGFQPQLTEFQVS 228
>pdb|1ZM8|A Chain A, Apo Crystal Structure Of Nuclease A From Anabaena Sp
Length = 259
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 78/169 (46%), Gaps = 24/169 (14%)
Query: 15 DDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHE-YFRGRNSDYKYS 73
+ + LSY+ TA WV L N+++ R + F D ++ + R S Y S
Sbjct: 48 NQYALSYNNSKGTANWVAWQL---NSSWLGNAER-QDNFRPDKTLPAGWVRVTPSMYSGS 103
Query: 74 GYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKHSRKLLKQYPNVY 133
GY RGH+A + + + TF+++N+ PQ NR+ W LE + R+L+ Q +Y
Sbjct: 104 GYARGHIAPSADRTKTTEDNAATFLMTNMMPQT-PDNNRNTWGNLEDYCRELVSQGKELY 162
Query: 134 VCTGP---LYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENG 179
+ GP L P+K GK V VP +KI+V + G
Sbjct: 163 IVAGPNGSLGKPLK---GK------------VTVPKSTWKIVVVLDSPG 196
>pdb|2O3B|A Chain A, Crystal Structure Complex Of Nuclease A (Nuca) With
Intra-Cellular Inhibitor Nuia
Length = 241
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 78/169 (46%), Gaps = 24/169 (14%)
Query: 15 DDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHE-YFRGRNSDYKYS 73
+ + LSY+ TA WV L N+++ R + F D ++ + R S Y S
Sbjct: 30 NQYALSYNNSKGTANWVAWQL---NSSWLGNAER-QDNFRPDKTLPAGWVRVTPSMYSGS 85
Query: 74 GYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKHSRKLLKQYPNVY 133
GY RGH+A + + + TF+++N+ PQ NR+ W LE + R+L+ Q +Y
Sbjct: 86 GYARGHIAPSADRTKTTEDNAATFLMTNMMPQT-PDNNRNTWGNLEDYCRELVSQGKELY 144
Query: 134 VCTGP---LYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENG 179
+ GP L P+K GK V VP +KI+V + G
Sbjct: 145 IVAGPNGSLGKPLK---GK------------VTVPKSTWKIVVVLDSPG 178
>pdb|1SMN|A Chain A, Identification Of The Serratia Endonuclease Dimer:
Structural Basis And Implications For Catalysis
pdb|1SMN|B Chain B, Identification Of The Serratia Endonuclease Dimer:
Structural Basis And Implications For Catalysis
pdb|1QAE|A Chain A, The Active Site Of Serratia Endonuclease Contains A
Conserved Magnesium-Water Cluster
pdb|1QAE|B Chain B, The Active Site Of Serratia Endonuclease Contains A
Conserved Magnesium-Water Cluster
pdb|1G8T|A Chain A, Sm Endonuclease From Seratia Marcenscens At 1.1 A
Resolution
pdb|1G8T|B Chain B, Sm Endonuclease From Seratia Marcenscens At 1.1 A
Resolution
Length = 245
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 9/128 (7%)
Query: 17 FVLSYDRRNRTAYWVFEHLTKENTAYSEAVN-RSKSEFFEDDSIHEY-FRGRNSDYKYSG 74
+ L+ + + A WV H+TK+ A + N ++ D++ + G N+ K
Sbjct: 28 YTLNNNSTTKFANWVAYHITKDTPASGKTRNWKTDPALNPADTLAPADYTGANAALK--- 84
Query: 75 YDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKHSRKLLKQ--YPNV 132
DRGH A + A + LSNI+PQ + N+ WA LE RKL+ + +V
Sbjct: 85 VDRGHQAPLASL-AGVSDWESLNYLSNITPQ-KSDLNQGAWARLEDQERKLIDRADISSV 142
Query: 133 YVCTGPLY 140
Y TGPLY
Sbjct: 143 YTVTGPLY 150
>pdb|1QL0|A Chain A, Sm Endonuclease From Seratia Marcenscens At Atomic
Resolution
pdb|1QL0|B Chain B, Sm Endonuclease From Seratia Marcenscens At Atomic
Resolution
Length = 241
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 9/128 (7%)
Query: 17 FVLSYDRRNRTAYWVFEHLTKENTAYSEAVN-RSKSEFFEDDSIHEY-FRGRNSDYKYSG 74
+ L+ + + A WV H+TK+ A + N ++ D++ + G N+ K
Sbjct: 24 YTLNNNSTTKFANWVAYHITKDTPASGKTRNWKTDPALNPADTLAPADYTGANAALK--- 80
Query: 75 YDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKHSRKLLKQ--YPNV 132
DRGH A + A + LSNI+PQ + N+ WA LE RKL+ + +V
Sbjct: 81 VDRGHQAPLASL-AGVSDWESLNYLSNITPQ-KSDLNQGAWARLEDQERKLIDRADISSV 138
Query: 133 YVCTGPLY 140
Y TGPLY
Sbjct: 139 YTVTGPLY 146
>pdb|1W9P|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9P|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9U|A Chain A, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9U|B Chain B, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9V|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|1W9V|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|2A3A|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3A|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3B|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3B|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3C|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3C|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3E|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2A3E|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2IUZ|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|2IUZ|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|3CH9|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CH9|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CHC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHC|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHD|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHD|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHE|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHE|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHF|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
pdb|3CHF|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
Length = 433
Score = 33.5 bits (75), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 16/57 (28%)
Query: 97 FVLSNISPQVGAGFNRDKWAELEKHSRKLLKQYP---------NVYVCTGPLYLPMK 144
+ +N+ P+ G + D WA++EKH YP NVY C LYL K
Sbjct: 74 YAFANVRPETGEVYMTDSWADIEKH-------YPGDSWSDTGNNVYGCIKQLYLLKK 123
>pdb|1WNO|A Chain A, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
pdb|1WNO|B Chain B, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
Length = 395
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 97 FVLSNISPQVGAGFNRDKWAELEKH--SRKLLKQYPNVYVCTGPLYLPMK 144
+ +N+ P+ G + D WA++EKH NVY C LYL K
Sbjct: 36 YAFANVRPETGEVYMTDSWADIEKHYPGDSWSDTGNNVYGCIKQLYLLKK 85
>pdb|3NKM|A Chain A, Crystal Structure Of Mouse Autotaxin
pdb|3NKN|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
14:0-Lpa
pdb|3NKO|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
16:0-Lpa
pdb|3NKP|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
18:1-Lpa
pdb|3NKQ|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
18:3-Lpa
pdb|3NKR|A Chain A, Crystal Structure Of Mouse Autotaxin In Complex With
22:6-Lpa
Length = 831
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 60/116 (51%), Gaps = 22/116 (18%)
Query: 97 FVLSNISPQVGAGFNRDKWAELEKHSRKLLKQYPN----VYVCTGPLYLPMKSPNGKKYV 152
F+++N+ P A F R W + R L+K+Y + V V +GP++ + NG + +
Sbjct: 657 FLVTNMVPMYPA-FKR-VWTYFQ---RVLVKKYASERNGVNVISGPIF--DYNYNGLRDI 709
Query: 153 NYEV---IGDSNVAVPTHFFKIIV--------AENENGKLVMENYVLPNAVISDST 197
E+ + S++ VPTH++ II A+ +G L + +++LP+ +D +
Sbjct: 710 EDEIKQYVEGSSIPVPTHYYSIITSCLDFTQPADKCDGPLSVSSFILPHRPDNDES 765
>pdb|2XRG|A Chain A, Crystal Structure Of Autotaxin (Enpp2) In Complex With The
Ha155 Boronic Acid Inhibitor
Length = 862
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 28/119 (23%)
Query: 97 FVLSNISPQVGAGFNRDKWAELEKHSRKLLKQYPN----VYVCTGPLY------LPMKSP 146
F+++N+ P A F R WA + R L+K+Y + V V +GP++ L
Sbjct: 696 FLVTNMVPMYPA-FKR-VWAYFQ---RVLVKKYASERNGVNVISGPIFDYNYDGLRDTED 750
Query: 147 NGKKYVNYEVIGDSNVAVPTHFFKIIV--------AENENGKLVMENYVLPNAVISDST 197
K+YV S++ VPTH++ II A+ +G L + +++LP+ +D +
Sbjct: 751 EIKQYVE-----GSSIPVPTHYYSIITSCLDFTQPADKCDGPLSVSSFILPHRPDNDES 804
>pdb|2XR9|A Chain A, Crystal Structure Of Autotaxin (Enpp2)
Length = 827
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 28/119 (23%)
Query: 97 FVLSNISPQVGAGFNRDKWAELEKHSRKLLKQYPN----VYVCTGPLY------LPMKSP 146
F+++N+ P A F R WA + R L+K+Y + V V +GP++ L
Sbjct: 661 FLVTNMVPMYPA-FKR-VWAYFQ---RVLVKKYASERNGVNVISGPIFDYNYDGLRDTED 715
Query: 147 NGKKYVNYEVIGDSNVAVPTHFFKIIV--------AENENGKLVMENYVLPNAVISDST 197
K+YV S++ VPTH++ II A+ +G L + +++LP+ +D +
Sbjct: 716 EIKQYVE-----GSSIPVPTHYYSIITSCLDFTQPADKCDGPLSVSSFILPHRPDNDES 769
>pdb|2QGF|B Chain B, Structure Of Regulatory Chain Mutant H20a Of Asparate
Transcarbamoylase From E. Coli
pdb|2QGF|D Chain D, Structure Of Regulatory Chain Mutant H20a Of Asparate
Transcarbamoylase From E. Coli
Length = 153
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 20/80 (25%)
Query: 139 LYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGKLVMENYVLPNAVISDSTP 198
LY P + N + NYEV+G S ++P ++V N N IS + P
Sbjct: 76 LYAPQATVN--RIDNYEVVGKSRPSLPERIDNVLVCPNSN-------------CISHAEP 120
Query: 199 L-TSFMV----STYLLKCSY 213
+ +SF V + LKC Y
Sbjct: 121 VSSSFAVRKRANDIALKCKY 140
>pdb|1ACM|B Chain B, Arginine 54 In The Active Site Of Escherichia Coli
Aspartate Transcarbamoylase Is Critical For Catalysis: A
Site-Specific Mutagenesis, Nmr And X-Ray Crystallography
Study
pdb|1ACM|D Chain D, Arginine 54 In The Active Site Of Escherichia Coli
Aspartate Transcarbamoylase Is Critical For Catalysis: A
Site-Specific Mutagenesis, Nmr And X-Ray Crystallography
Study
pdb|5AT1|B Chain B, Structural Consequences Of Effector Binding To The T State
Of Aspartate Carbamoyltransferase. Crystal Structures Of
The Unligated And Atp-, And Ctp-Complexed Enzymes At
2.6-Angstroms Resolution
pdb|5AT1|D Chain D, Structural Consequences Of Effector Binding To The T State
Of Aspartate Carbamoyltransferase. Crystal Structures Of
The Unligated And Atp-, And Ctp-Complexed Enzymes At
2.6-Angstroms Resolution
pdb|8AT1|B Chain B, Crystal Structures Of Aspartate Carbamoyltransferase
Ligated With Phosphonoacetamide, Malonate, And Ctp Or
Atp At 2.8-Angstroms Resolution And Neutral PH
pdb|8AT1|D Chain D, Crystal Structures Of Aspartate Carbamoyltransferase
Ligated With Phosphonoacetamide, Malonate, And Ctp Or
Atp At 2.8-Angstroms Resolution And Neutral PH
pdb|1AT1|B Chain B, Crystal Structures Of Phosphonoacetamide Ligated T And
Phosphonoacetamide And Malonate Ligated R States Of
Aspartate Carbamoyltransferase At 2.8-Angstroms
Resolution And Neutral PH
pdb|1AT1|D Chain D, Crystal Structures Of Phosphonoacetamide Ligated T And
Phosphonoacetamide And Malonate Ligated R States Of
Aspartate Carbamoyltransferase At 2.8-Angstroms
Resolution And Neutral PH
pdb|8ATC|B Chain B, Complex Of N-Phosphonacetyl-L-Aspartate With Aspartate
Carbamoyltransferase. X-Ray Refinement, Analysis Of
Conformational Changes And Catalytic And Allosteric
Mechanisms
pdb|8ATC|D Chain D, Complex Of N-Phosphonacetyl-L-Aspartate With Aspartate
Carbamoyltransferase. X-Ray Refinement, Analysis Of
Conformational Changes And Catalytic And Allosteric
Mechanisms
pdb|2AT1|B Chain B, Crystal Structures Of Phosphonoacetamide Ligated T And
Phosphonoacetamide And Malonate Ligated R States Of
Aspartate Carbamoyltransferase At 2.8-Angstroms
Resolution And Neutral Ph
pdb|2AT1|D Chain D, Crystal Structures Of Phosphonoacetamide Ligated T And
Phosphonoacetamide And Malonate Ligated R States Of
Aspartate Carbamoyltransferase At 2.8-Angstroms
Resolution And Neutral Ph
pdb|3AT1|B Chain B, Crystal Structures Of Phosphonoacetamide Ligated T And
Phosphonoacetamide And Malonate Ligated R States Of
Aspartate Carbamoyltransferase At 2.8-Angstroms
Resolution And Neutral Ph
pdb|3AT1|D Chain D, Crystal Structures Of Phosphonoacetamide Ligated T And
Phosphonoacetamide And Malonate Ligated R States Of
Aspartate Carbamoyltransferase At 2.8-Angstroms
Resolution And Neutral Ph
pdb|4AT1|B Chain B, Structural Consequences Of Effector Binding To The T State
Of Aspartate Carbamoyltransferase. Crystal Structures Of
The Unligated And Atp-, And Ctp-Complexed Enzymes At
2.6-Angstroms Resolution
pdb|4AT1|D Chain D, Structural Consequences Of Effector Binding To The T State
Of Aspartate Carbamoyltransferase. Crystal Structures Of
The Unligated And Atp-, And Ctp-Complexed Enzymes At
2.6-Angstroms Resolution
pdb|6AT1|B Chain B, Structural Consequences Of Effector Binding To The T State
Of Aspartate Carbamoyltransferase. Crystal Structures Of
The Unligated And Atp-, And Ctp-Complexed Enzymes At
2.6-Angstroms Resolution
pdb|6AT1|D Chain D, Structural Consequences Of Effector Binding To The T State
Of Aspartate Carbamoyltransferase. Crystal Structures Of
The Unligated And Atp-, And Ctp-Complexed Enzymes At
2.6-Angstroms Resolution
pdb|7AT1|B Chain B, Crystal Structures Of Aspartate Carbamoyltransferase
Ligated With Phosphonoacetamide, Malonate, And Ctp Or
Atp At 2.8-angstroms Resolution And Neutral P*h
pdb|7AT1|D Chain D, Crystal Structures Of Aspartate Carbamoyltransferase
Ligated With Phosphonoacetamide, Malonate, And Ctp Or
Atp At 2.8-angstroms Resolution And Neutral P*h
Length = 153
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 20/80 (25%)
Query: 139 LYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGKLVMENYVLPNAVISDSTP 198
LY P + N + NYEV+G S ++P ++V N N IS + P
Sbjct: 76 LYAPQATVN--RIDNYEVVGKSRPSLPERIDNVLVCPNSN-------------CISHAEP 120
Query: 199 L-TSFMV----STYLLKCSY 213
+ +SF V + LKC Y
Sbjct: 121 VSSSFAVRKRANDIALKCKY 140
>pdb|1D09|B Chain B, Aspartate Transcarbamoylase Complexed With
N-Phosphonacetyl-L- Aspartate (Pala)
pdb|1D09|D Chain D, Aspartate Transcarbamoylase Complexed With
N-Phosphonacetyl-L- Aspartate (Pala)
pdb|1EZZ|B Chain B, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
P268a Mutant In The T-State
pdb|1EZZ|D Chain D, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
P268a Mutant In The T-State
pdb|1F1B|B Chain B, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
P268a Mutant In The R-state In The Presence Of
N-phosphonacetyl-l-aspartate
pdb|1F1B|D Chain D, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
P268a Mutant In The R-state In The Presence Of
N-phosphonacetyl-l-aspartate
pdb|1I5O|B Chain B, Crystal Structure Of Mutant R105a Of E. Coli Aspartate
Transcarbamoylase
pdb|1I5O|D Chain D, Crystal Structure Of Mutant R105a Of E. Coli Aspartate
Transcarbamoylase
pdb|1SKU|B Chain B, E. Coli Aspartate Transcarbamylase 240's Loop Mutant
(K244n)
pdb|1SKU|D Chain D, E. Coli Aspartate Transcarbamylase 240's Loop Mutant
(K244n)
pdb|1Q95|G Chain G, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1Q95|H Chain H, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1Q95|I Chain I, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1Q95|J Chain J, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1Q95|K Chain K, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1Q95|L Chain L, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|G Chain G, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|H Chain H, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|I Chain I, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|J Chain J, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|K Chain K, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0B|L Chain L, Aspartate Transcarbamylase (Atcase) Of Escherichia Coli: A
New Crystalline R State Bound To Pala, Or To Product
Analogues Phosphate And Citrate
pdb|1R0C|B Chain B, Products In The T State Of Aspartate Transcarbamylase:
Crystal Structure Of The Phosphate And
N-Carbamyl-L-Aspartate Ligated Enzyme
pdb|1R0C|H Chain H, Products In The T State Of Aspartate Transcarbamylase:
Crystal Structure Of The Phosphate And
N-Carbamyl-L-Aspartate Ligated Enzyme
pdb|1TTH|B Chain B, Aspartate Transcarbamoylase Catalytic Chain Mutant
Glu50ala Complexed With N-(Phosphonacetyl-L-Aspartate)
(Pala)
pdb|1TTH|D Chain D, Aspartate Transcarbamoylase Catalytic Chain Mutant
Glu50ala Complexed With N-(Phosphonacetyl-L-Aspartate)
(Pala)
pdb|1TU0|B Chain B, Aspartate Transcarbamoylase Catalytic Chain Mutant E50a
Complex With Phosphonoacetamide
pdb|1TU0|D Chain D, Aspartate Transcarbamoylase Catalytic Chain Mutant E50a
Complex With Phosphonoacetamide
pdb|1TUG|B Chain B, Aspartate Transcarbamoylase Catalytic Chain Mutant E50a
Complex With Phosphonoacetamide, Malonate, And
Cytidine-5- Prime-Triphosphate (Ctp)
pdb|1TUG|D Chain D, Aspartate Transcarbamoylase Catalytic Chain Mutant E50a
Complex With Phosphonoacetamide, Malonate, And
Cytidine-5- Prime-Triphosphate (Ctp)
pdb|1XJW|B Chain B, The Structure Of E. Coli Aspartate Transcarbamoylase Q137a
Mutant In The R-State
pdb|1XJW|D Chain D, The Structure Of E. Coli Aspartate Transcarbamoylase Q137a
Mutant In The R-State
pdb|1ZA1|B Chain B, Structure Of Wild-Type E. Coli Aspartate Transcarbamoylase
In The Presence Of Ctp At 2.20 A Resolution
pdb|1ZA1|D Chain D, Structure Of Wild-Type E. Coli Aspartate Transcarbamoylase
In The Presence Of Ctp At 2.20 A Resolution
pdb|1ZA2|B Chain B, Structure Of Wild-Type E. Coli Aspartate Transcarbamoylase
In The Presence Of Ctp, Carbamoyl Phosphate At 2.50 A
Resolution
pdb|1ZA2|D Chain D, Structure Of Wild-Type E. Coli Aspartate Transcarbamoylase
In The Presence Of Ctp, Carbamoyl Phosphate At 2.50 A
Resolution
pdb|2A0F|B Chain B, Structure Of D236a Mutant E. Coli Aspartate
Transcarbamoylase In Presence Of Phosphonoacetamide At
2.90 A Resolution
pdb|2A0F|D Chain D, Structure Of D236a Mutant E. Coli Aspartate
Transcarbamoylase In Presence Of Phosphonoacetamide At
2.90 A Resolution
pdb|2AIR|B Chain B, T-State Active Site Of Aspartate Transcarbamylase:crystal
Structure Of The Carbamyl Phosphate And L-Alanosine
Ligated Enzyme
pdb|2AIR|H Chain H, T-State Active Site Of Aspartate Transcarbamylase:crystal
Structure Of The Carbamyl Phosphate And L-Alanosine
Ligated Enzyme
pdb|2FZC|B Chain B, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.10 Resolution
pdb|2FZC|D Chain D, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.10 Resolution
pdb|2FZG|B Chain B, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.25 Resolution
pdb|2FZG|D Chain D, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.25 Resolution
pdb|2FZK|B Chain B, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.50 Resolution
pdb|2FZK|D Chain D, The Structure Of Wild-Type E. Coli Aspartate
Transcarbamoylase In Complex With Novel T State
Inhibitors At 2.50 Resolution
pdb|2H3E|B Chain B, Structure Of Wild-Type E. Coli Aspartate Transcarbamoylase
In The Presence Of N-Phosphonacetyl-L-Isoasparagine At
2.3a Resolution
pdb|2H3E|D Chain D, Structure Of Wild-Type E. Coli Aspartate Transcarbamoylase
In The Presence Of N-Phosphonacetyl-L-Isoasparagine At
2.3a Resolution
pdb|2HSE|B Chain B, Structure Of D236a E. Coli Aspartate Transcarbamoylase In
The Presence Of Phosphonoacetamide And L-Aspartate At
2.60 A Resolution
pdb|2HSE|D Chain D, Structure Of D236a E. Coli Aspartate Transcarbamoylase In
The Presence Of Phosphonoacetamide And L-Aspartate At
2.60 A Resolution
pdb|1RAA|B Chain B, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAA|D Chain D, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAB|B Chain B, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAB|D Chain D, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAC|B Chain B, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAC|D Chain D, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAD|B Chain B, Crystal Structure Of Ctp-ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAD|D Chain D, Crystal Structure Of Ctp-ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAE|B Chain B, Crystal Structure Of Ctp-ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAE|D Chain D, Crystal Structure Of Ctp-ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAF|B Chain B, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAF|D Chain D, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAG|B Chain B, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAG|D Chain D, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAH|B Chain B, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAH|D Chain D, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAI|B Chain B, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|1RAI|D Chain D, Crystal Structure Of Ctp-Ligated T State Aspartate
Transcarbamoylase At 2.5 Angstroms Resolution:
Implications For Atcase Mutants And The Mechanism Of
Negative Cooperativity
pdb|2IPO|B Chain B, E. Coli Aspartate Transcarbamoylase Complexed With N-
Phosphonacetyl-l-asparagine
pdb|2IPO|D Chain D, E. Coli Aspartate Transcarbamoylase Complexed With N-
Phosphonacetyl-l-asparagine
pdb|3D7S|B Chain B, Crystal Structure Of Wild-Type E. Coli Asparate
Transcarbamoylase At Ph 8.5 At 2.80 A Resolution
pdb|3D7S|D Chain D, Crystal Structure Of Wild-Type E. Coli Asparate
Transcarbamoylase At Ph 8.5 At 2.80 A Resolution
pdb|3MPU|B Chain B, Crystal Structure Of The C47aA241C DISULFIDE-Linked E.
Coli Aspartate Transcarbamoylase Holoenzyme
pdb|3MPU|D Chain D, Crystal Structure Of The C47aA241C DISULFIDE-Linked E.
Coli Aspartate Transcarbamoylase Holoenzyme
pdb|3MPU|F Chain F, Crystal Structure Of The C47aA241C DISULFIDE-Linked E.
Coli Aspartate Transcarbamoylase Holoenzyme
pdb|4E2F|D Chain D, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
K164eE239K Mutant In An Intermediate State
pdb|4E2F|B Chain B, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
K164eE239K Mutant In An Intermediate State
pdb|4E2F|J Chain J, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
K164eE239K Mutant In An Intermediate State
pdb|4E2F|L Chain L, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
K164eE239K Mutant In An Intermediate State
pdb|4E2F|H Chain H, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
K164eE239K Mutant In An Intermediate State
pdb|4E2F|F Chain F, Crystal Structure Of E. Coli Aspartate Transcarbamoylase
K164eE239K Mutant In An Intermediate State
pdb|4F04|B Chain B, A Second Allosteric Site In E. Coli Aspartate
Transcarbamoylase: R- State Atcase With Utp Bound
pdb|4F04|D Chain D, A Second Allosteric Site In E. Coli Aspartate
Transcarbamoylase: R- State Atcase With Utp Bound
pdb|4FYV|B Chain B, Aspartate Transcarbamoylase Complexed With Dctp
pdb|4FYV|D Chain D, Aspartate Transcarbamoylase Complexed With Dctp
pdb|4FYW|B Chain B, E. Coli Aspartate Transcarbamoylase Complexed With Ctp
pdb|4FYW|D Chain D, E. Coli Aspartate Transcarbamoylase Complexed With Ctp
pdb|4FYX|B Chain B, E. Coli Aspartate Transcarbamoylase Complexed With Dctp,
Utp, And Mg2+
pdb|4FYX|D Chain D, E. Coli Aspartate Transcarbamoylase Complexed With Dctp,
Utp, And Mg2+
pdb|4FYY|B Chain B, E. Coli Aspartate Transcarbamoylase Complexed With Ctp,
Utp, And Mg2+
pdb|4FYY|D Chain D, E. Coli Aspartate Transcarbamoylase Complexed With Ctp,
Utp, And Mg2+
Length = 153
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 20/80 (25%)
Query: 139 LYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGKLVMENYVLPNAVISDSTP 198
LY P + N + NYEV+G S ++P ++V N N IS + P
Sbjct: 76 LYAPQATVN--RIDNYEVVGKSRPSLPERIDNVLVCPNSN-------------CISHAEP 120
Query: 199 L-TSFMV----STYLLKCSY 213
+ +SF V + LKC Y
Sbjct: 121 VSSSFAVRKRANDIALKCKY 140
>pdb|1NBE|B Chain B, Aspartate Transcarbamoylase Regulatory Chain Mutant (T82a)
pdb|1NBE|D Chain D, Aspartate Transcarbamoylase Regulatory Chain Mutant (T82a)
Length = 153
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 20/80 (25%)
Query: 139 LYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGKLVMENYVLPNAVISDSTP 198
LY P + N + NYEV+G S ++P ++V N N IS + P
Sbjct: 76 LYAPQAAVN--RIDNYEVVGKSRPSLPERIDNVLVCPNSN-------------CISHAEP 120
Query: 199 L-TSFMV----STYLLKCSY 213
+ +SF V + LKC Y
Sbjct: 121 VSSSFAVRKRANDIALKCKY 140
>pdb|9ATC|B Chain B, Atcase Y165f Mutant
Length = 146
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 20/80 (25%)
Query: 139 LYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGKLVMENYVLPNAVISDSTP 198
LY P + N + NYEV+G S ++P ++V N N IS + P
Sbjct: 69 LYAPQATVN--RIDNYEVVGKSRPSLPERIDNVLVCPNSN-------------CISHAEP 113
Query: 199 L-TSFMV----STYLLKCSY 213
+ +SF V + LKC Y
Sbjct: 114 VSSSFAVRKRANDIALKCKY 133
>pdb|2QG9|B Chain B, Structure Of A Regulatory Subunit Mutant D19a Of Atcase
From E. Coli
pdb|2QG9|D Chain D, Structure Of A Regulatory Subunit Mutant D19a Of Atcase
From E. Coli
Length = 153
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 20/80 (25%)
Query: 139 LYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGKLVMENYVLPNAVISDSTP 198
LY P + N + NYEV+G S ++P ++V N N IS + P
Sbjct: 76 LYAPQATVN--RIDNYEVVGKSRPSLPERIDNVLVCPNSN-------------CISHAEP 120
Query: 199 L-TSFMV----STYLLKCSY 213
+ +SF V + LKC Y
Sbjct: 121 VSSSFAVRKRANDIALKCKY 140
>pdb|4FXK|B Chain B, Human Complement C4
Length = 767
Score = 28.1 bits (61), Expect = 4.5, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 11 LRSFDDFVLSYDRRNRTAYWVFEHLTKEN----TAYSEAVNRSKSEFFEDDSIHEYFRGR 66
RS D V++ D +AYW+ H T+E T S N KS + ++ RG
Sbjct: 620 FRSTQDTVIALDAL--SAYWIASHTTEERGLNVTLSSTGRNGFKSHALQLNN--RQIRGL 675
Query: 67 NSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVL 99
+ ++S + ++ GN K K L VL
Sbjct: 676 EEELQFSLGSKINVKVGGNSKGTLKVLRTYNVL 708
>pdb|4FXG|B Chain B, Complement C4 In Complex With Masp-2
pdb|4FXG|E Chain E, Complement C4 In Complex With Masp-2
Length = 767
Score = 28.1 bits (61), Expect = 4.5, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 11 LRSFDDFVLSYDRRNRTAYWVFEHLTKEN----TAYSEAVNRSKSEFFEDDSIHEYFRGR 66
RS D V++ D +AYW+ H T+E T S N KS + ++ RG
Sbjct: 620 FRSTQDTVIALDAL--SAYWIASHTTEERGLNVTLSSTGRNGFKSHALQLNN--RQIRGL 675
Query: 67 NSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVL 99
+ ++S + ++ GN K K L VL
Sbjct: 676 EEELQFSLGSKINVKVGGNSKGTLKVLRTYNVL 708
>pdb|3IYN|A Chain A, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|B Chain B, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|C Chain C, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|D Chain D, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|E Chain E, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|F Chain F, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|G Chain G, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|H Chain H, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|I Chain I, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|J Chain J, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|K Chain K, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|3IYN|L Chain L, 3.6-Angstrom Cryoem Structure Of Human Adenovirus Type 5
pdb|1VSZ|A Chain A, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|B Chain B, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|C Chain C, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|D Chain D, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|E Chain E, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|F Chain F, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|G Chain G, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|H Chain H, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|I Chain I, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|J Chain J, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|K Chain K, Crystal Structure Of Human Adenovirus At 3.5a
pdb|1VSZ|L Chain L, Crystal Structure Of Human Adenovirus At 3.5a
Length = 952
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 45/119 (37%), Gaps = 9/119 (7%)
Query: 84 GNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKH--SRKLLKQYPNVYVCTGPLYL 141
G K+ D+TF PQ+G +W E E + + ++LK+ + C G
Sbjct: 187 GVEGQTPKYADKTF---QPEPQIG----ESQWYETEINHAAGRVLKKTTPMKPCYGSYAK 239
Query: 142 PMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGKLVMENYVLPNAVISDSTPLT 200
P G+ + + G V FF A NG + VL + + TP T
Sbjct: 240 PTNENGGQGILVKQQNGKLESQVEMQFFSTTEATAGNGDNLTPKVVLYSEDVDIETPDT 298
>pdb|2BVI|F Chain F, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|G Chain G, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|H Chain H, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|I Chain I, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|J Chain J, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|K Chain K, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|L Chain L, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|M Chain M, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|N Chain N, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|O Chain O, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|P Chain P, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|2BVI|Q Chain Q, The Quasi-Atomic Model Of Human Adenovirus Type 5 Capsid
(Part 2)
pdb|1P30|A Chain A, Refinement Of Adenovirus Type 5 Hexon With Cns
pdb|3TG7|A Chain A, Crystal Structure Of Adenovirus Serotype 5 Hexon At 1.6a
Resolution
Length = 951
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 45/119 (37%), Gaps = 9/119 (7%)
Query: 84 GNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKH--SRKLLKQYPNVYVCTGPLYL 141
G K+ D+TF PQ+G +W E E + + ++LK+ + C G
Sbjct: 186 GVEGQTPKYADKTF---QPEPQIG----ESQWYETEINHAAGRVLKKTTPMKPCYGSYAK 238
Query: 142 PMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGKLVMENYVLPNAVISDSTPLT 200
P G+ + + G V FF A NG + VL + + TP T
Sbjct: 239 PTNENGGQGILVKQQNGKLESQVEMQFFSTTEATAGNGDNLTPKVVLYSEDVDIETPDT 297
>pdb|2FPQ|A Chain A, Crystal Structure Of Botulinum Neurotoxin Type D Light
Chain
Length = 444
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 10/61 (16%)
Query: 148 GKKYVNYEVI-----GDSNVAVPT-----HFFKIIVAENENGKLVMENYVLPNAVISDST 197
GKK +NY V+ GDS+ T H I V + ENG + N + P+ +I
Sbjct: 111 GKKLINYLVVGSPFMGDSSTPEDTFDFTRHTTNIAVEKFENGSWKVTNIITPSVLIFGPL 170
Query: 198 P 198
P
Sbjct: 171 P 171
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase
1 In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase
1 In A Complex With Amp And Phenylalanine
Length = 563
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 36 TKENTAYSEAVNRSKSEFFEDDSIHEYFRGRNS 68
T E Y AVN +K+E+ D +IH+ F + S
Sbjct: 18 THEEEQYLFAVNNTKAEYPRDKTIHQLFEEQVS 50
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,133,650
Number of Sequences: 62578
Number of extensions: 306854
Number of successful extensions: 823
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 806
Number of HSP's gapped (non-prelim): 26
length of query: 222
length of database: 14,973,337
effective HSP length: 95
effective length of query: 127
effective length of database: 9,028,427
effective search space: 1146610229
effective search space used: 1146610229
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)