Query psy10887
Match_columns 222
No_of_seqs 127 out of 1098
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 20:59:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10887.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10887hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3721|consensus 100.0 8.8E-69 1.9E-73 441.7 17.4 220 1-221 61-281 (302)
2 PTZ00259 endonuclease G; Provi 100.0 3E-61 6.5E-66 429.6 19.0 220 1-221 101-349 (434)
3 smart00477 NUC DNA/RNA non-spe 100.0 2.6E-60 5.7E-65 392.2 17.7 205 14-221 1-206 (209)
4 cd00091 NUC DNA/RNA non-specif 100.0 5.9E-58 1.3E-62 385.8 18.9 218 1-221 1-228 (241)
5 COG1864 NUC1 DNA/RNA endonucle 100.0 7.2E-53 1.6E-57 354.2 12.6 203 2-221 54-262 (281)
6 PF01223 Endonuclease_NS: DNA/ 100.0 1.4E-52 3E-57 345.0 12.6 199 14-221 2-204 (207)
7 PF13930 Endonuclea_NS_2: DNA/ 97.4 6.1E-05 1.3E-09 57.6 0.9 62 71-141 52-113 (130)
8 PF14166 YueH: YueH-like prote 36.5 21 0.00046 24.8 1.3 16 161-176 29-44 (80)
9 PF07655 Secretin_N_2: Secreti 25.0 88 0.0019 22.3 3.0 27 110-136 67-95 (98)
10 PF08893 DUF1839: Domain of un 24.0 61 0.0013 28.5 2.3 36 180-217 41-76 (319)
11 PF08333 DUF1725: Protein of u 23.0 92 0.002 15.8 1.9 12 113-124 5-16 (20)
12 COG3877 Uncharacterized protei 22.4 52 0.0011 24.2 1.3 17 203-219 57-73 (122)
13 PF11372 DUF3173: Domain of un 22.3 61 0.0013 21.2 1.5 15 203-217 45-59 (59)
14 PF05584 Sulfolobus_pRN: Sulfo 22.3 60 0.0013 22.1 1.5 14 203-216 18-31 (72)
15 PF10714 LEA_6: Late embryogen 21.6 27 0.00058 23.9 -0.3 19 66-84 25-44 (79)
16 PF08831 MHCassoc_trimer: Clas 21.3 1.1E+02 0.0023 20.9 2.6 18 109-126 37-54 (72)
17 PF13556 HTH_30: PucR C-termin 20.7 58 0.0013 20.8 1.2 16 203-218 30-45 (59)
18 COG2606 EbsC Uncharacterized c 20.7 1.4E+02 0.0031 23.3 3.6 51 165-217 40-97 (155)
19 KOG3996|consensus 20.4 64 0.0014 27.0 1.6 39 98-137 131-171 (256)
No 1
>KOG3721|consensus
Probab=100.00 E-value=8.8e-69 Score=441.69 Aligned_cols=220 Identities=58% Similarity=0.943 Sum_probs=210.1
Q ss_pred CCcCCCCCCcccccCCeEEEEeCCCCceeEEEEEccccccccccCCCCCCCCCCCCcccCccccccCCCCccCCCccccc
Q psy10887 1 MKYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHEYFRGRNSDYKYSGYDRGHL 80 (222)
Q Consensus 1 ~~~G~P~~~~~l~~~~y~~~yd~~~~~p~wva~~l~~~~~~~~~~~~R~~~~f~~D~~l~~~~q~~~~dY~~sg~dRGHL 80 (222)
||||+|..+++..+.+|++|||+++|.|+||+++|+++.+.. ...+|+.+.|++|..||+.+++.+.||++||||||||
T Consensus 61 ~kyGfPG~~~~r~~~~fvlsYDrrtR~p~WV~Ehit~e~l~~-~d~dRk~c~Fk~D~~Ip~~F~a~n~DY~~SG~dRGHl 139 (302)
T KOG3721|consen 61 MKYGFPGLDELRVYENFVLSYDRRTRVPHWVCEHITPESLAE-RDADRKPCEFKPDDTIPPKFRAKNRDYRGSGYDRGHL 139 (302)
T ss_pred HHcCCCCcchheeccceeEEeccccCcceeeeeccCHHHhhh-cccccccccCcCCCCcCHhHhhhcccccccCCccccc
Confidence 899999999999999999999999999999999999998863 3448888999999999999999999999999999999
Q ss_pred ccCCCccccHHhhhhhhhhhCccccCCCCCchhHHHHHHHHHHHHHhcCCCEEEEEcccccCCCCCCCceeeeeeeeCCC
Q psy10887 81 AAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKHSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDS 160 (222)
Q Consensus 81 ~p~~d~~~~~~~~~~Tf~~sNi~PQ~~~~fN~g~W~~lE~~vr~~~~~~~~l~VvtG~~~~~~~~~~g~~~~~~~~~g~~ 160 (222)
||++|+.+++.++.+|||||||+||.+..||++.|++||.++|+++.+.+.+||+|||+|+|..+.+|+++++|++||++
T Consensus 140 A~A~n~k~sq~amdeTFYLSNm~PQvg~gfNr~~Wn~lE~~cR~lt~~y~sV~V~TGPLyLPk~~~dgk~~VkYqVIG~n 219 (302)
T KOG3721|consen 140 APAGNHKFSQKAMDETFYLSNMVPQVGDGFNRDYWNRLEMYCRRLTKKYDSVYVVTGPLYLPKKEGDGKWYVKYQVIGNN 219 (302)
T ss_pred ccccccchhHHHHHhhhhhhccCcccccccchhHHHHHHHHHHHHHhhhCeEEEEecccccccccCCCceEEEEEEeCCC
Confidence 99999999999999999999999999656999999999999999999999999999999999998899999999999999
Q ss_pred cccccccceEEEEEecCCC-ceEEEEEEEeCCCCCCCCCccccccChHHHHHHhcCcccccc
Q psy10887 161 NVAVPTHFFKIIVAENENG-KLVMENYVLPNAVISDSTPLTSFMVSTYLLKCSYIINLLIMF 221 (222)
Q Consensus 161 ~v~VP~~f~Kvv~~~~~~~-~~~~~afv~pN~~~~~~~~l~~~~v~v~~IE~~tGl~ff~~~ 221 (222)
.|+||+||||||+.+...+ .+...|||+||.+++.+.+|++|+|||++||+.+||.||+.-
T Consensus 220 ~VAVPTHFfKVii~E~~~~~~~~l~ayVlPN~~I~~~~~L~~F~Vpve~vEr~aGL~f~~~~ 281 (302)
T KOG3721|consen 220 NVAVPTHFFKVIIAEAEPGEKPALEAYVLPNAPIDDDTPLTSFLVPVEDVERSAGLEFFDNL 281 (302)
T ss_pred CcccccceeeEEEeecCCCCCceeeeeecCCccccCCCccceeecCHHHHhhhccceeccCC
Confidence 9999999999999998766 788999999999999999999999999999999999999864
No 2
>PTZ00259 endonuclease G; Provisional
Probab=100.00 E-value=3e-61 Score=429.60 Aligned_cols=220 Identities=41% Similarity=0.686 Sum_probs=195.3
Q ss_pred CCcCCCCCCcccccCCeEEEEeCCCCceeEEEEEcccccc---ccccCCCCCCCCCCCCcccCccccccCCCCccCCCcc
Q psy10887 1 MKYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENT---AYSEAVNRSKSEFFEDDSIHEYFRGRNSDYKYSGYDR 77 (222)
Q Consensus 1 ~~~G~P~~~~~l~~~~y~~~yd~~~~~p~wva~~l~~~~~---~~~~~~~R~~~~f~~D~~l~~~~q~~~~dY~~sg~dR 77 (222)
|+||+|+.++||++.+|+++||..+++|+||||+|++... .......|+.+.|++|++||..+|+.++||++|||||
T Consensus 101 ~~~G~Ps~~~ll~~~~Yvvsys~~~r~P~WVae~Lt~~~~~~~~~~~~~~R~~~~F~~DprIP~~~ra~~sDY~~SgydR 180 (434)
T PTZ00259 101 PSFGLPSTENLRLYEGYVSSLNYERRIPNWVAEYIPYRGISVEAGEKKANRADCVFYADPTVPEAFRAENKDYTGSGYSR 180 (434)
T ss_pred hhcCCCCCcceEeecCEEEEEccccCCceEEEEEeeccccccccccccccCcCCCCccCCCCChhhccchhhhcccCccc
Confidence 6899999999999999999999999999999999985321 1123567876789999999999999999999999999
Q ss_pred cccccCCCccccHHhhhhhhhhh-CccccCCCCCchhHHHHHHHHHHHHHhcCCC-EEEEEcccccCCCC----------
Q psy10887 78 GHLAAAGNHKANQKHLDQTFVLS-NISPQVGAGFNRDKWAELEKHSRKLLKQYPN-VYVCTGPLYLPMKS---------- 145 (222)
Q Consensus 78 GHL~p~~d~~~~~~~~~~Tf~~s-Ni~PQ~~~~fN~g~W~~lE~~vr~~~~~~~~-l~VvtG~~~~~~~~---------- 145 (222)
|||+|++|+.++++++.+||+|| ||+||+ +.||+|+|.+||+++|+++.+.+. |||||||+|.++..
T Consensus 181 GHLaP~~d~~~s~~a~~~TF~lstNivPQ~-~~fN~g~W~~LE~~vR~la~~~~~~vyVvTGpif~p~~~~~~~~~~~~~ 259 (434)
T PTZ00259 181 GHLAAAGFHKASQTAMDDTFLLSANIVPQD-LTNNAGDWLRLENLTRKLAREYEVGVYVVSGPLFVPRYMREKLRKWRLA 259 (434)
T ss_pred cccccccccccCHHHHhhhhcchhccCccc-hhhhhhHHHHHHHHHHHHHHHcCCcEEEEeCeeecCCcccccccccccc
Confidence 99999999989989999999995 999999 999999999999999999988776 99999999987631
Q ss_pred -------------CCCceeeeeeeeCCCcccccccceEEEEEecCCC-ceEEEEEEEeCCCCCCCCCccccccChHHHHH
Q psy10887 146 -------------PNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENG-KLVMENYVLPNAVISDSTPLTSFMVSTYLLKC 211 (222)
Q Consensus 146 -------------~~g~~~~~~~~~g~~~v~VP~~f~Kvv~~~~~~~-~~~~~afv~pN~~~~~~~~l~~~~v~v~~IE~ 211 (222)
..++.+++|.++|++.|+||+||||||+.++.++ .+.++||||||.+...+.+|..|+|||++||+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~v~y~~iG~~~VaVPthffKVVl~~k~~~~~~~a~AFv~PN~~~~~~~~L~~y~VsV~dIE~ 339 (434)
T PTZ00259 260 EPSEIHKPDSPADKTPKKVVTYEVIGDNNVAVPTHLFKVILAEKNDGPPHEVAAFLMPNEPISKEKPLTAYQVPLEEIEK 339 (434)
T ss_pred cccccccccccccccccceeeeeecCCCCccCChHHheEEEEecCCCCceEEEEEEecCCCccCCCCcceEeeeHHHHHH
Confidence 1234456678888889999999999999997765 68899999999987777899999999999999
Q ss_pred HhcCcccccc
Q psy10887 212 SYIINLLIMF 221 (222)
Q Consensus 212 ~tGl~ff~~~ 221 (222)
+|||+||++.
T Consensus 340 ~TGLdFFp~L 349 (434)
T PTZ00259 340 LTGLQFFPKL 349 (434)
T ss_pred HHCcccccCC
Confidence 9999999875
No 3
>smart00477 NUC DNA/RNA non-specific endonuclease. prokaryotic and eukaryotic double- and single-stranded DNA and RNA endonucleases also present in phosphodiesterases
Probab=100.00 E-value=2.6e-60 Score=392.23 Aligned_cols=205 Identities=44% Similarity=0.700 Sum_probs=182.8
Q ss_pred cCCeEEEEeCCCCceeEEEEEccccccccccCCCCCCCCCCCCcccCccccccCCCCccCCCcccccccCCCccccHHhh
Q psy10887 14 FDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHEYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHL 93 (222)
Q Consensus 14 ~~~y~~~yd~~~~~p~wva~~l~~~~~~~~~~~~R~~~~f~~D~~l~~~~q~~~~dY~~sg~dRGHL~p~~d~~~~~~~~ 93 (222)
+.+|++|||..+++|+||+|.|+++.... ...|..++|+.|++||..+|+.++||.+||||||||+|++|+.++.+++
T Consensus 1 ~~~y~~~yd~~~~~p~w~a~~l~~~~~~~--~~~~~~~~f~~D~~l~~~~~~~~~dY~~sg~dRGHL~p~~d~~~~~~~~ 78 (209)
T smart00477 1 RNQYVLSYNRSTRMPNWVAYHITGELLTS--GKERKSDNFKPDTRIPEKFQAKLSDYKGSGYDRGHLAPAADHKFSSEAM 78 (209)
T ss_pred CCceEEEECcccCceEEEEEEecHHHcCC--CCCCCCCCcccCCCCChhhccChHHhhccCCccccccChhhccCCHHHH
Confidence 46899999999999999999999987642 2223347999999999999999999999999999999999999898899
Q ss_pred hhhhhhhCccccCCCCCchhHHHHHHHHHHHHHhc-CCCEEEEEcccccCCCCCCCceeeeeeeeCCCcccccccceEEE
Q psy10887 94 DQTFVLSNISPQVGAGFNRDKWAELEKHSRKLLKQ-YPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKII 172 (222)
Q Consensus 94 ~~Tf~~sNi~PQ~~~~fN~g~W~~lE~~vr~~~~~-~~~l~VvtG~~~~~~~~~~g~~~~~~~~~g~~~v~VP~~f~Kvv 172 (222)
.+||+||||+||+ ++||+|+|++||+.+|+++.. .++|||||||+|.++....+...+.+.++|.++|+||+||||||
T Consensus 79 ~~TF~~sNi~PQ~-~~fN~g~W~~lE~~vr~~~~~~~~~v~V~tG~~~~~~~~~~~~~~~~~~~i~~~~V~VP~~f~Kvv 157 (209)
T smart00477 79 ADTFYLSNIVPQY-PDFNRGAWAYLEDYLRKLTASEYNGVYVVSGPLFLPDYDGKGKLEVKYQVIGSKNVAIPTHFFKVI 157 (209)
T ss_pred HHHHhhhhcccch-hhhhhHHHHHHHHHHHHHHHhhCCCEEEEeCcccCCCcCCCCcceEEEeecCCcccccccceEEEE
Confidence 9999999999999 999999999999999999975 89999999999987754444445566778888999999999999
Q ss_pred EEecCCCceEEEEEEEeCCCCCCCCCccccccChHHHHHHhcCcccccc
Q psy10887 173 VAENENGKLVMENYVLPNAVISDSTPLTSFMVSTYLLKCSYIINLLIMF 221 (222)
Q Consensus 173 ~~~~~~~~~~~~afv~pN~~~~~~~~l~~~~v~v~~IE~~tGl~ff~~~ 221 (222)
++++.++.+.++||+|||++.....+|++|++||+|||++|||+||+..
T Consensus 158 ~~~~~~~~~~~~af~~pn~~~~~~~~l~~~~vsv~~iE~~tGl~Ff~~l 206 (209)
T smart00477 158 TAEKADSNLEVAAFILPNDPINDESPLTNFRVPVDEIERLTGLVFFQNL 206 (209)
T ss_pred EEecCCCCEEEEEEEcCCCCCCCCCCHHHccCcHHHHHHHhChHhhhcC
Confidence 9998777889999999999876656899999999999999999999864
No 4
>cd00091 NUC DNA/RNA non-specific endonuclease; prokaryotic and eukaryotic double- and single-stranded DNA and RNA endonucleases also present in phosphodiesterases. They exists as monomers and homodimers.
Probab=100.00 E-value=5.9e-58 Score=385.79 Aligned_cols=218 Identities=39% Similarity=0.660 Sum_probs=193.0
Q ss_pred CCcCCCCCC---cccccCCeEEEEeCCCCceeEEEEEccccccccccCCCCCCCCCCCCcccCccccccCCCCccCC-Cc
Q psy10887 1 MKYGFPSLD---SLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHEYFRGRNSDYKYSG-YD 76 (222)
Q Consensus 1 ~~~G~P~~~---~~l~~~~y~~~yd~~~~~p~wva~~l~~~~~~~~~~~~R~~~~f~~D~~l~~~~q~~~~dY~~sg-~d 76 (222)
|++|+|..+ ++|.+.+|++|||..+++|.||+|.|+++... ....|..+.|+.|++|+..+|+.+++|.+++ ||
T Consensus 1 ~~~g~p~~~~~~~~l~~~~y~~~y~~~~~~p~wva~~l~~~~~~--~~~~~~~~~~~~D~~l~~~~~~~~~~Y~~s~~~d 78 (241)
T cd00091 1 LQYGRPGVLADTEVLSYTHYVLSYNRATRLPLWVAEHIDKEDLG--KNVDRKYDQFKQDPRIPPLFSATNSDYKGSGSLD 78 (241)
T ss_pred CCcCCCCcCCcccEEEecCEEEEECcccCcceEEEEEecHHHcc--CCcCcCCCceecCCCCChHHccchhhhccCCCcc
Confidence 689999975 49999999999999999999999999998752 2233334799999999999999999999999 99
Q ss_pred ccccccCCCccccHHhhhhhhhhhCccccCCCCCchhHHHHHHHHHHHHH-hcCCCEEEEEcccccCCCCCCCceeeeee
Q psy10887 77 RGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKHSRKLL-KQYPNVYVCTGPLYLPMKSPNGKKYVNYE 155 (222)
Q Consensus 77 RGHL~p~~d~~~~~~~~~~Tf~~sNi~PQ~~~~fN~g~W~~lE~~vr~~~-~~~~~l~VvtG~~~~~~~~~~g~~~~~~~ 155 (222)
||||+|++|+.++++++.+||+||||+||+ ++||+|+|++||+++|+++ ...++|||||||+|.+.....+..++.+.
T Consensus 79 RGHL~p~~d~~~~~~~~~~Tf~~sNi~PQ~-~~~N~g~W~~LE~~vr~~~~~~~~~v~V~tG~~~~~~~~~~~~~~~~~~ 157 (241)
T cd00091 79 RGHLAPAADPVWSQDAQDATFYLTNMAPQV-QGFNQGNWAYLEDYLRDLAASEGKDVYVVTGPLFLPDLDGDGGSYLSTQ 157 (241)
T ss_pred ccccCcccccCcCHHHHhcceeceecCCCC-cchhhhHHHHHHHHHHHHHHhcCCcEEEEECceEcCCccccCCeeEEEe
Confidence 999999999999889999999999999999 9999999999999999999 77899999999999876544444455555
Q ss_pred eeCCCcccccccceEEEEEecCCCceEEEEEEEeCCCCCCCC-----CccccccChHHHHHHhcCcccccc
Q psy10887 156 VIGDSNVAVPTHFFKIIVAENENGKLVMENYVLPNAVISDST-----PLTSFMVSTYLLKCSYIINLLIMF 221 (222)
Q Consensus 156 ~~g~~~v~VP~~f~Kvv~~~~~~~~~~~~afv~pN~~~~~~~-----~l~~~~v~v~~IE~~tGl~ff~~~ 221 (222)
.++.++|+||+||||||+++..+++++++||+|||++..... +++.|+++|++||++|||+||+..
T Consensus 158 ~~~~~~v~VP~~f~Kvv~~~~~~~~~~~~af~vpn~~~~~~~~~~~~~~~~~~v~v~~iE~~tGl~F~~~l 228 (241)
T cd00091 158 VINNGKVAVPTHFWKVIIDEKAPGNLSVGAFVLPNNNPHDTLEFILCVEKTFQVPVASVEKATGLSFFCNV 228 (241)
T ss_pred eccCCccccccceeEEEEEecCCCCEEEEEEEccCCCCccccccccCccceeeccHHHHHHHhCcchhhcC
Confidence 677889999999999999998878889999999999754443 589999999999999999999864
No 5
>COG1864 NUC1 DNA/RNA endonuclease G, NUC1 [Nucleotide transport and metabolism]
Probab=100.00 E-value=7.2e-53 Score=354.24 Aligned_cols=203 Identities=31% Similarity=0.542 Sum_probs=180.3
Q ss_pred CcCCCCCCcccccCCeEEEEeCCCCceeEEEEEccccccccccCCCCCCCCCCCCcccCccccccCCCCccCCCcccccc
Q psy10887 2 KYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHEYFRGRNSDYKYSGYDRGHLA 81 (222)
Q Consensus 2 ~~G~P~~~~~l~~~~y~~~yd~~~~~p~wva~~l~~~~~~~~~~~~R~~~~f~~D~~l~~~~q~~~~dY~~sg~dRGHL~ 81 (222)
++|+| ..+|.+.+|++|||..++.|.|||+.|+++.+. ..+|. ++|++|++||+.+|+..+||++||||||||+
T Consensus 54 ~~~l~--~~~l~~~~fsv~~n~~~k~p~~vA~~i~~~~l~---~i~R~-~~f~~D~rip~~~~~~~~dY~~sg~DRGH~v 127 (281)
T COG1864 54 KDGLP--NYLLVYNHFSVVYNRSTKLPNWVAVNIDGSSLK---KIKRR-DKFFPDTRIPEKYRATLSDYKGSGYDRGHMV 127 (281)
T ss_pred ccCCc--hhheeheeeeeEeccccCCceeEEEeechhhhh---hcccc-cccccCCCCChhhcccHhhhcCCCCCccccc
Confidence 35555 568999999999999999999999999999873 56777 4999999999999999999999999999999
Q ss_pred cCCCccccHHhhhhhhhhhCccccCCCCCchhHHHHHHHHHHHHHhc-CCCEEEEEcccccCCCCCCCceeeeeeeeCCC
Q psy10887 82 AAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKHSRKLLKQ-YPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDS 160 (222)
Q Consensus 82 p~~d~~~~~~~~~~Tf~~sNi~PQ~~~~fN~g~W~~lE~~vr~~~~~-~~~l~VvtG~~~~~~~~~~g~~~~~~~~~g~~ 160 (222)
|++|+.++.+++.+||+||||+||. +.+||+.|..||+++|++|.+ +..++|+|||+|..+. -.++.+
T Consensus 128 p~a~~~~a~~a~~dTF~~TN~~PQ~-~~~Nr~~W~~lE~~~R~la~~~~~~~~V~tgp~~~~~~----------~~~~~~ 196 (281)
T COG1864 128 PPADGDFAIQANNDTFYMTNMTPQA-ADLNRKIWLELEDYCRNLARKYGSVVIVFTGPYFRKDD----------TFIEKN 196 (281)
T ss_pred CCCCCcchhhcchhhheeecCCCcc-hhhhhhHHHHHHHHHHHHHHhcCcEEEEEecceecCCC----------cccCCC
Confidence 9999999999999999999999999 999999999999999999986 5689999999986431 134567
Q ss_pred cccccccceEEEEEecCCC-----ceEEEEEEEeCCCCCCCCCccccccChHHHHHHhcCcccccc
Q psy10887 161 NVAVPTHFFKIIVAENENG-----KLVMENYVLPNAVISDSTPLTSFMVSTYLLKCSYIINLLIMF 221 (222)
Q Consensus 161 ~v~VP~~f~Kvv~~~~~~~-----~~~~~afv~pN~~~~~~~~l~~~~v~v~~IE~~tGl~ff~~~ 221 (222)
+|+||++|||||+..+.+| .+.++||++||.+.-...++++|+|+|++||+.||++|+.+.
T Consensus 197 ~V~VP~~fwKvv~~~~~~g~~s~a~~~~~~~~ipN~~~~~~~~~k~yqV~v~~lE~~~~~~~lsn~ 262 (281)
T COG1864 197 KVAVPSEFWKVVVTLKKDGNDSAAYLRVQAFYIPNLPGFRNGALKTYQVPVDELEAGTGFDFLSNV 262 (281)
T ss_pred cEEeecceeEEEEEecCCCCcchhhhhhheeecCCccccccccceeeeeeHHHHhhccccchhccC
Confidence 8999999999999988433 247999999999866667999999999999999999999764
No 6
>PF01223 Endonuclease_NS: DNA/RNA non-specific endonuclease; InterPro: IPR001604 A family of bacterial and eukaryotic endonucleases 3.1.30 from EC share the following characteristics: they act on both DNA and RNA, cleave double-stranded and single-stranded nucleic acids and require a divalent ion such as magnesium for their activity. A histidine has been shown [] to be essential for the activity of the Serratia marcescens nuclease. This residue is located in a conserved region which also contains an aspartic acid residue that could be implicated in the binding of the divalent ion.; GO: 0003676 nucleic acid binding, 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 3OWV_A 3NKM_A 3NKN_A 3NKR_A 3NKQ_A 3NKO_A 3NKP_A 3S5B_A 1ZM8_A 2O3B_A ....
Probab=100.00 E-value=1.4e-52 Score=344.97 Aligned_cols=199 Identities=35% Similarity=0.598 Sum_probs=162.2
Q ss_pred cCCeEEEEeCCCCceeEEEEEccccccccccCC---CCCCCCCCCCcccCccccccCCCCccCCCcccccccCCCccccH
Q psy10887 14 FDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAV---NRSKSEFFEDDSIHEYFRGRNSDYKYSGYDRGHLAAAGNHKANQ 90 (222)
Q Consensus 14 ~~~y~~~yd~~~~~p~wva~~l~~~~~~~~~~~---~R~~~~f~~D~~l~~~~q~~~~dY~~sg~dRGHL~p~~d~~~~~ 90 (222)
+.+|++|||..+++|+||+|.|++......... .+...+|..|++++...|...+||.+++||||||+|+++...+.
T Consensus 2 ~~~y~~~yd~~~~~p~~va~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~dy~~~~~dRGHL~p~~~~~~~~ 81 (207)
T PF01223_consen 2 YENYAVCYDKDRRIPLWVAYILTPDSVNKSRPRVSKSRRSDRFYPDPRIPSAFQATDSDYKGSGYDRGHLAPSAADFFSA 81 (207)
T ss_dssp -SSEEEEEETTTTEEEEEEEEECTTCGSSSTTG----GGGT--B--TTS-GGGSS-HHHHTTTTEEEEESS-GGGCCSSH
T ss_pred CceEEEEECCCCCCEEEEEEEeEhhhcCCCCCccccccCCCCcEeCCCCChhheecccccccccccccccCcchhhhccc
Confidence 678999999999999999999999887432222 01236899999999989999999999999999999965555777
Q ss_pred HhhhhhhhhhCccccCCCCCchhHHHHHHHHHHHHHh-cCCCEEEEEcccccCCCCCCCceeeeeeeeCCCcccccccce
Q psy10887 91 KHLDQTFVLSNISPQVGAGFNRDKWAELEKHSRKLLK-QYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFF 169 (222)
Q Consensus 91 ~~~~~Tf~~sNi~PQ~~~~fN~g~W~~lE~~vr~~~~-~~~~l~VvtG~~~~~~~~~~g~~~~~~~~~g~~~v~VP~~f~ 169 (222)
.++.+||+||||+||+ +.||+|+|+.||+.||+++. ..++|+|+|||++.+.. ......++++|+||++||
T Consensus 82 ~~~~~Tf~~tN~~PQ~-~~fN~g~W~~lE~~vr~~~~~~~~~v~V~tG~~~~~~~-------~~~~~~~~~~v~VP~~fw 153 (207)
T PF01223_consen 82 EAQRATFYYTNIAPQW-ASFNQGNWKRLENWVRDLADKNGGDVYVVTGPIFDPNL-------SNYYPIGNNRVPVPTHFW 153 (207)
T ss_dssp HHHHHCTBGGGEEEEC-HHHHHTHHHHHHHHHHHHHHCTHTEEEEEEEEECECEE-------CEEEEETTTTEE--SEEE
T ss_pred hhhhhhhccccccchh-hhhccHHHHHHHHHHHHHHHhcCCeEEEEEeEEecCCc-------eEEeccCCeeEecchheE
Confidence 8999999999999999 99999999999999999998 68999999999987542 112356678999999999
Q ss_pred EEEEEecCCCceEEEEEEEeCCCCCCCCCccccccChHHHHHHhcCcccccc
Q psy10887 170 KIIVAENENGKLVMENYVLPNAVISDSTPLTSFMVSTYLLKCSYIINLLIMF 221 (222)
Q Consensus 170 Kvv~~~~~~~~~~~~afv~pN~~~~~~~~l~~~~v~v~~IE~~tGl~ff~~~ 221 (222)
|||+++..++.++++||++||++.....++++| ++|+|||++||++||+.+
T Consensus 154 Kiv~~~~~~~~~~~~af~~~n~~~~~~~~~~~~-~sv~~iE~~tG~~f~~~l 204 (207)
T PF01223_consen 154 KIVCDPDNNGELKAIAFVIPNNNNPHSKNLEDY-VSVDEIEELTGLDFFCNL 204 (207)
T ss_dssp EEEEEESSTTTEEEEEEEEESSSS-TTSTGGGG-E-HHHHHHHHTEETSTTS
T ss_pred EEEEEecCCCceEEEEEEECCCCCCCccccccc-ccHHHHHHhhCCccCCCC
Confidence 999999987778999999999998777778899 999999999999999875
No 7
>PF13930 Endonuclea_NS_2: DNA/RNA non-specific endonuclease; PDB: 2XGR_A 2XH3_B.
Probab=97.37 E-value=6.1e-05 Score=57.59 Aligned_cols=62 Identities=32% Similarity=0.385 Sum_probs=40.3
Q ss_pred ccCCCcccccccCCCccccHHhhhhhhhhhCccccCCCCCchhHHHHHHHHHHHHHhcCCCEEEEEccccc
Q psy10887 71 KYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKHSRKLLKQYPNVYVCTGPLYL 141 (222)
Q Consensus 71 ~~sg~dRGHL~p~~d~~~~~~~~~~Tf~~sNi~PQ~~~~fN~g~W~~lE~~vr~~~~~~~~l~VvtG~~~~ 141 (222)
...+++||||.+.. ++-. .. .-|++||. +.+|++.|..+|+.+++.....+.|.+-.-|+|.
T Consensus 52 ~~~~~~~GHLIa~~---lgG~--~~---~~Nlv~~~-~~~N~~~~~~~E~~i~~~~~~g~~V~~~V~~~Y~ 113 (130)
T PF13930_consen 52 GGYGDDRGHLIAYQ---LGGS--GE---LDNLVPQT-RNFNRGGMRYFENEIADALKPGKRVRYRVTPIYR 113 (130)
T ss_dssp --EE--EEESS-HH---HH----SS----GGEEE---HHHHHTSSHHHHHHHHHHH-TTSEEEEEEEEE--
T ss_pred CCccccccchHHHH---Hhcc--Cc---CCceeecC-HHHhHHHHHHHHHHHHHhhcCCCEEEEEEEEEec
Confidence 34579999998753 2211 11 15999999 9999999999999999977778888888888875
No 8
>PF14166 YueH: YueH-like protein
Probab=36.49 E-value=21 Score=24.82 Aligned_cols=16 Identities=13% Similarity=0.247 Sum_probs=13.9
Q ss_pred cccccccceEEEEEec
Q psy10887 161 NVAVPTHFFKIIVAEN 176 (222)
Q Consensus 161 ~v~VP~~f~Kvv~~~~ 176 (222)
-|+||+.+|.+.+.-.
T Consensus 29 lIAIPdl~WS~~i~y~ 44 (80)
T PF14166_consen 29 LIAIPDLEWSFEISYE 44 (80)
T ss_pred EEEECCceeEEEeehh
Confidence 5999999999998754
No 9
>PF07655 Secretin_N_2: Secretin N-terminal domain; InterPro: IPR011514 This is a short domain found in bacterial type II/III secretory system proteins. The architecture of these proteins suggests that this family may be functionally analogous to IPR005644 from INTERPRO.; GO: 0009297 pilus assembly, 0019867 outer membrane
Probab=24.96 E-value=88 Score=22.32 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=20.0
Q ss_pred CchhHHHHHHHHHHHHHh--cCCCEEEEE
Q psy10887 110 FNRDKWAELEKHSRKLLK--QYPNVYVCT 136 (222)
Q Consensus 110 fN~g~W~~lE~~vr~~~~--~~~~l~Vvt 136 (222)
-+...|..||..++.++. ..++..|+.
T Consensus 67 s~~dfW~~L~~~l~~ilg~~~~Gr~vv~~ 95 (98)
T PF07655_consen 67 SKSDFWEDLQKTLQAILGTPGDGRSVVSN 95 (98)
T ss_pred ECCchHHHHHHHHHHHhCCCCCCCEEEeC
Confidence 345799999999999984 356665553
No 10
>PF08893 DUF1839: Domain of unknown function (DUF1839); InterPro: IPR014989 This group of proteins are functionally uncharacterised.
Probab=23.98 E-value=61 Score=28.46 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=28.9
Q ss_pred ceEEEEEEEeCCCCCCCCCccccccChHHHHHHhcCcc
Q psy10887 180 KLVMENYVLPNAVISDSTPLTSFMVSTYLLKCSYIINL 217 (222)
Q Consensus 180 ~~~~~afv~pN~~~~~~~~l~~~~v~v~~IE~~tGl~f 217 (222)
...+.+|-+.++- + .+.++.|.+|.+|||+|.||.-
T Consensus 41 P~AaL~fTv~qDF-E-GDQfTFfK~p~eDLe~LYGi~V 76 (319)
T PF08893_consen 41 PVAALAFTVTQDF-E-GDQFTFFKFPLEDLERLYGIVV 76 (319)
T ss_pred chhcccceeeccc-c-ccceeecCCCHHHHHHHhCcch
Confidence 3468888887763 3 3479999999999999999974
No 11
>PF08333 DUF1725: Protein of unknown function (DUF1725); InterPro: IPR013544 This domain is found at the C terminus of many eukaryotic and one bacterial sequence. Many of its members are annotated as being putative L1 retrotransposons or LINE-1 reverse transcriptase homologues. The region in question is found repeated in some family members.
Probab=22.99 E-value=92 Score=15.76 Aligned_cols=12 Identities=42% Similarity=0.631 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHH
Q psy10887 113 DKWAELEKHSRK 124 (222)
Q Consensus 113 g~W~~lE~~vr~ 124 (222)
|.|..||+.+-+
T Consensus 5 ~kWmeLE~IiLs 16 (20)
T PF08333_consen 5 GKWMELENIILS 16 (20)
T ss_pred HHHHHHHHHHHH
Confidence 789999998744
No 12
>COG3877 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.38 E-value=52 Score=24.20 Aligned_cols=17 Identities=6% Similarity=-0.228 Sum_probs=14.5
Q ss_pred ccChHHHHHHhcCcccc
Q psy10887 203 MVSTYLLKCSYIINLLI 219 (222)
Q Consensus 203 ~v~v~~IE~~tGl~ff~ 219 (222)
+=.++|||+.+|++.++
T Consensus 57 RGnlKEvEr~lg~sYpt 73 (122)
T COG3877 57 RGNLKEVERELGISYPT 73 (122)
T ss_pred ccCHHHHHHHHCCccHH
Confidence 45899999999999874
No 13
>PF11372 DUF3173: Domain of unknown function (DUF3173); InterPro: IPR021512 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=22.31 E-value=61 Score=21.21 Aligned_cols=15 Identities=20% Similarity=0.051 Sum_probs=12.8
Q ss_pred ccChHHHHHHhcCcc
Q psy10887 203 MVSTYLLKCSYIINL 217 (222)
Q Consensus 203 ~v~v~~IE~~tGl~f 217 (222)
+||++-||+++|+++
T Consensus 45 ~VP~~~VEeiLG~~l 59 (59)
T PF11372_consen 45 RVPASAVEEILGIEL 59 (59)
T ss_pred cccHHHHHHHHCCCC
Confidence 489999999999864
No 14
>PF05584 Sulfolobus_pRN: Sulfolobus plasmid regulatory protein; InterPro: IPR008848 This family consists of several plasmid regulatory proteins from the extreme thermophilic and acidophilic archaea Sulfolobus.
Probab=22.25 E-value=60 Score=22.13 Aligned_cols=14 Identities=14% Similarity=-0.126 Sum_probs=12.9
Q ss_pred ccChHHHHHHhcCc
Q psy10887 203 MVSTYLLKCSYIIN 216 (222)
Q Consensus 203 ~v~v~~IE~~tGl~ 216 (222)
+.+++|||+.||++
T Consensus 18 c~TLeeL~ekTgi~ 31 (72)
T PF05584_consen 18 CCTLEELEEKTGIS 31 (72)
T ss_pred cCCHHHHHHHHCCC
Confidence 78999999999986
No 15
>PF10714 LEA_6: Late embryogenesis abundant protein 18; InterPro: IPR018930 This is a family of late embryogenesis-abundant proteins There is high accumulation of this protein in dry seeds, and in the roots of full-grown plants in response to dehydration and ABA (abscisic acid application) treatments []. This LEA protein disappears after germination. It accumulates in growing regions of well irrigated hypocotyls and meristems suggesting a role in seedling growth resumption on rehydration []. As a group the LEA proteins are highly hydrophilic, contain a high percentage of glycine residues, lack Cys and Trp residues and do not coagulate upon exposure to high temperature, and for these reasons are considered to be members of a group of proteins called hydrophilins []. Expression of the protein is negatively regulated during etiolating growth, particularly in roots, in contrast to its expression patterns during normal growth [].
Probab=21.60 E-value=27 Score=23.91 Aligned_cols=19 Identities=37% Similarity=0.614 Sum_probs=15.6
Q ss_pred cCCCCccCCC-cccccccCC
Q psy10887 66 RNSDYKYSGY-DRGHLAAAG 84 (222)
Q Consensus 66 ~~~dY~~sg~-dRGHL~p~~ 84 (222)
...||+..+| .+||+-|.-
T Consensus 25 ~LEDYK~~gYGt~GH~~pkp 44 (79)
T PF10714_consen 25 DLEDYKRKGYGTEGHQEPKP 44 (79)
T ss_pred cHHHHhhhccccccccCCCC
Confidence 3578998888 899999874
No 16
>PF08831 MHCassoc_trimer: Class II MHC-associated invariant chain trimerisation domain; InterPro: IPR011988 This entry represents the trimerisation domain of the MHC class II-associated invariant chain (Ii). Ii plays a critical role in the assembly of the MHC, as well as in MHC II antigen processing by stabilising peptide-free class II alpha/beta heterodimers in a complex soon after their synthesis and directing transport of the complex from the endoplasmic reticulum to compartments where peptide loading of class II takes place []. In antigen-presenting cells (APCs), loading of MHC II molecules with peptides is regulated by Ii, which blocks MHC II antigen-binding sites in pre-endosomal compartments []. Several molecules then act upon MHC II molecules in endosomes to facilitate peptide loading: Ii-degrading proteases, the peptide exchange factor, human leukocyte antigen-DM (HLA-DM), and its modulator, HLA-DO (DO). The Invariant chain contains a single transmembrane domain. Ii first assembles into a trimer and then associates with three class II alpha/beta MHC heterodimers. Although the membrane-proximal region of the Ii luminal domain is structurally disordered, the C-terminal segment of the luminal domain is largely alpha-helical and contains a major interaction site for the Ii trimer []. More information about these proteins can be found at Protein of the Month: MHC [].; GO: 0042289 MHC class II protein binding, 0006886 intracellular protein transport, 0006955 immune response, 0019882 antigen processing and presentation, 0016020 membrane; PDB: 1IIE_C.
Probab=21.35 E-value=1.1e+02 Score=20.87 Aligned_cols=18 Identities=22% Similarity=0.532 Sum_probs=14.1
Q ss_pred CCchhHHHHHHHHHHHHH
Q psy10887 109 GFNRDKWAELEKHSRKLL 126 (222)
Q Consensus 109 ~fN~g~W~~lE~~vr~~~ 126 (222)
..+.-.|+.+|.|.|.|.
T Consensus 37 ~M~~~~Wk~FEsWM~~WL 54 (72)
T PF08831_consen 37 QMNESDWKSFESWMHQWL 54 (72)
T ss_dssp HS-HHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHHHHHH
Confidence 345579999999999874
No 17
>PF13556 HTH_30: PucR C-terminal helix-turn-helix domain; PDB: 3ONQ_B.
Probab=20.72 E-value=58 Score=20.76 Aligned_cols=16 Identities=6% Similarity=-0.186 Sum_probs=11.2
Q ss_pred ccChHHHHHHhcCccc
Q psy10887 203 MVSTYLLKCSYIINLL 218 (222)
Q Consensus 203 ~v~v~~IE~~tGl~ff 218 (222)
.-.++.||+++|+++-
T Consensus 30 ~yRl~ki~~l~g~dl~ 45 (59)
T PF13556_consen 30 RYRLKKIEELLGLDLD 45 (59)
T ss_dssp HHHHHHHHHHHS--TT
T ss_pred HHHHHHHHHHHCcCCC
Confidence 4468899999999875
No 18
>COG2606 EbsC Uncharacterized conserved protein [Function unknown]
Probab=20.65 E-value=1.4e+02 Score=23.27 Aligned_cols=51 Identities=16% Similarity=0.054 Sum_probs=33.7
Q ss_pred cccceEEEEEecCCCceEEEEEEEeCCCCCCCC-------CccccccChHHHHHHhcCcc
Q psy10887 165 PTHFFKIIVAENENGKLVMENYVLPNAVISDST-------PLTSFMVSTYLLKCSYIINL 217 (222)
Q Consensus 165 P~~f~Kvv~~~~~~~~~~~~afv~pN~~~~~~~-------~l~~~~v~v~~IE~~tGl~f 217 (222)
|...+|.++...+.+ ..+.+|+|-+..-+.. ....=+.+.+++|++||-.+
T Consensus 40 ~~~i~KTLvl~~~~~--~~~~~V~p~~~~Ldlkkla~~~G~kk~~ma~~~~v~~~TGy~v 97 (155)
T COG2606 40 PAQVAKTLVLAVDKG--GPALAVVPGDQRLDLKKLAKALGAKKAEMADPEEVQRLTGYVV 97 (155)
T ss_pred HHHeeEEEEEEcCCC--CEEEEEEeCcCccCHHHHHHHhCCcccccCCHHHHHHHhCCcc
Confidence 467899998876522 4678888887532111 11222689999999998544
No 19
>KOG3996|consensus
Probab=20.43 E-value=64 Score=27.03 Aligned_cols=39 Identities=21% Similarity=0.282 Sum_probs=28.7
Q ss_pred hhhCccccCCCCCchhHHHHHHHHHHHHHhcCC--CEEEEEc
Q psy10887 98 VLSNISPQVGAGFNRDKWAELEKHSRKLLKQYP--NVYVCTG 137 (222)
Q Consensus 98 ~~sNi~PQ~~~~fN~g~W~~lE~~vr~~~~~~~--~l~VvtG 137 (222)
-|-||+|-+ ...|.+.|+.+-.|-+..+..++ +|.-+-|
T Consensus 131 dm~~iV~iH-N~~NE~aWqeIl~WE~~~~~ec~~PKL~~F~G 171 (256)
T KOG3996|consen 131 DMKNIVPIH-NANNERAWQEILKWEALHAEECGGPKLLRFKG 171 (256)
T ss_pred hhhheeehh-ccccHHHHHHHHHHHhcCCcccCCceeeeecC
Confidence 367899998 89999999999888876655543 3444444
Done!