Query psy10887
Match_columns 222
No_of_seqs 127 out of 1098
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 21:00:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10887.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10887hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s5b_A Endonuclease G; DNA fra 100.0 3.6E-69 1.2E-73 453.8 18.7 221 1-221 16-236 (249)
2 3ism_A CG8862; endonuclease, e 100.0 4.5E-68 1.5E-72 450.6 19.2 221 1-221 23-243 (267)
3 4a1n_A Nuclease EXOG, mitochon 100.0 1.5E-63 5.2E-68 432.8 16.1 218 1-221 23-244 (335)
4 1zm8_A Nuclease, endonuclease; 100.0 5.1E-61 1.8E-65 406.4 17.8 203 1-221 25-245 (259)
5 1g8t_A Nuclease SM2 isoform; e 100.0 1.4E-59 4.9E-64 395.2 14.4 204 1-221 9-222 (245)
6 4gtw_A Ectonucleotide pyrophos 100.0 4.5E-53 1.5E-57 407.6 12.0 215 1-221 555-802 (823)
7 3nkq_A Ectonucleotide pyrophos 100.0 1.4E-52 4.8E-57 403.4 10.9 213 1-220 557-801 (831)
8 2xgr_A SPD1 nuclease, putative 89.2 0.5 1.7E-05 38.9 5.0 62 72-141 114-188 (252)
9 3owv_A DNA-entry nuclease; seq 48.8 2.3 7.9E-05 34.8 -1.2 68 73-141 128-201 (248)
10 1iie_A Protein (HLA-DR antigen 39.1 23 0.0008 23.2 2.7 14 113-126 43-56 (75)
11 2jo7_A Glycosylphosphatidylino 22.6 59 0.002 25.3 2.9 33 94-129 161-193 (224)
No 1
>3s5b_A Endonuclease G; DNA fragmentation, DNAse, protein-DNA interactions beta-alpha-metal finger nuclease, hydrolase, mitochondria; 1.80A {Caenorhabditis elegans}
Probab=100.00 E-value=3.6e-69 Score=453.82 Aligned_cols=221 Identities=52% Similarity=0.874 Sum_probs=202.4
Q ss_pred CCcCCCCCCcccccCCeEEEEeCCCCceeEEEEEccccccccccCCCCCCCCCCCCcccCccccccCCCCccCCCccccc
Q psy10887 1 MKYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHEYFRGRNSDYKYSGYDRGHL 80 (222)
Q Consensus 1 ~~~G~P~~~~~l~~~~y~~~yd~~~~~p~wva~~l~~~~~~~~~~~~R~~~~f~~D~~l~~~~q~~~~dY~~sg~dRGHL 80 (222)
|+||+|++++|+.+.+|++|||..+++|+||||+|+++.+......+|+.++|++|++||..+|+.++||.+||||||||
T Consensus 16 ~~yG~P~~~~~~~~~~Y~~~yd~~~r~p~Wva~~l~~~~~~~~~~~~R~~~~f~~D~~ip~~~~a~~~dY~~sg~dRGHL 95 (249)
T 3s5b_A 16 MKHGYPGFTNVRTYEDFVLSYDYKTRTAHWVCEHLTPERLKHAEGVDRKLCEFKPDITFPQKFLSQNTDYKCSGFDRGHL 95 (249)
T ss_dssp TTTCCSCCTTEEECSSCEEEEETTTTEEEEEEEEECTTTC-----CCGGGCCCBCCTTSCGGGCCCHHHHTTTTCEEEES
T ss_pred CCCCCCCccceeecCCEEEEECcccCCeEEEEEEeeHHHccccCCCCCCCCCCCCCCCCChhhhcchhhhcccCCcceee
Confidence 89999999999999999999999999999999999998764334567875689999999999999999999999999999
Q ss_pred ccCCCccccHHhhhhhhhhhCccccCCCCCchhHHHHHHHHHHHHHhcCCCEEEEEcccccCCCCCCCceeeeeeeeCCC
Q psy10887 81 AAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKHSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDS 160 (222)
Q Consensus 81 ~p~~d~~~~~~~~~~Tf~~sNi~PQ~~~~fN~g~W~~lE~~vr~~~~~~~~l~VvtG~~~~~~~~~~g~~~~~~~~~g~~ 160 (222)
+|++|+.++++++.+||+||||+||+++.||+|+|+.||+++|+++.++++|||||||+|.++...||+++++++++|++
T Consensus 96 ~p~~d~~~~~~~~~~TF~ltNi~PQ~~~~fN~g~W~~lE~~vr~~a~~~~~v~VvTGp~~~~~~~~dg~~~~~~~~ig~~ 175 (249)
T 3s5b_A 96 AAAGNHRKSQLAVDQTFYLSNMSPQVGRGFNRDKWNDLEMHCRRVAKKMINSYIITGPLYLPKLEGDGKKYIKYQVIGDN 175 (249)
T ss_dssp SCGGGCCSCHHHHHHTTBGGGEEEECCCCCCTTHHHHHHHHHHHHHTTSSCEEEEEEEECCEEECTTSCEEEEEEEETTT
T ss_pred ccccccccCHHHHHhHHHhhhcccccchhhhccHHHHHHHHHHHHHHhCCcEEEEeCceecCCccCCCceEEeeeeccCC
Confidence 99999999988999999999999999559999999999999999999999999999999987655689888888889999
Q ss_pred cccccccceEEEEEecCCCceEEEEEEEeCCCCCCCCCccccccChHHHHHHhcCcccccc
Q psy10887 161 NVAVPTHFFKIIVAENENGKLVMENYVLPNAVISDSTPLTSFMVSTYLLKCSYIINLLIMF 221 (222)
Q Consensus 161 ~v~VP~~f~Kvv~~~~~~~~~~~~afv~pN~~~~~~~~l~~~~v~v~~IE~~tGl~ff~~~ 221 (222)
+|+||+||||||+++..++.+.++|||+||.+...+++|+.|+|+|+|||++|||+||+..
T Consensus 176 ~V~VPt~f~Kvi~~~~~~g~~~~~afv~pn~~~~~~~~l~~~~v~V~~IE~~TGldFf~~l 236 (249)
T 3s5b_A 176 NVAVPTHFFKVALFEVTPGKFELESYILPNAVIEDTVEISKFHVPLDAVERSAGLEIFARL 236 (249)
T ss_dssp TEECCSEEEEEEEEEEETTEEEEEEEEEESSCCCTTCCGGGGBCCHHHHHHHHTCCTTTTS
T ss_pred CccCchHheEEEEEecCCCcEEEEEEEecCcCCCCCCchhhEEeEHHHHHHHHCCCcCcCC
Confidence 9999999999999988777899999999999877778999999999999999999999863
No 2
>3ism_A CG8862; endonuclease, endonuclease inhibitor complex, metal complex, hydrolase, hydrolase inhibitor-hydrolase complex; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=4.5e-68 Score=450.59 Aligned_cols=221 Identities=60% Similarity=1.024 Sum_probs=205.3
Q ss_pred CCcCCCCCCcccccCCeEEEEeCCCCceeEEEEEccccccccccCCCCCCCCCCCCcccCccccccCCCCccCCCccccc
Q psy10887 1 MKYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHEYFRGRNSDYKYSGYDRGHL 80 (222)
Q Consensus 1 ~~~G~P~~~~~l~~~~y~~~yd~~~~~p~wva~~l~~~~~~~~~~~~R~~~~f~~D~~l~~~~q~~~~dY~~sg~dRGHL 80 (222)
|+||+|+.++++.+.+|++|||..+++|+||+|+|+++.+......+|+.++|++|++||+.+|+.++||.+||||||||
T Consensus 23 ~~~G~P~~~~~~~~~~y~~~yd~~~r~p~Wva~~l~~~~~~~~~~~~R~~~~F~~D~~ip~~~~a~~~dY~~sg~dRGHL 102 (267)
T 3ism_A 23 MKYGFPGLDHVRSHSDYVLSYDRRNRVPHWVFEHLTAESVAKNDAVDRSKCDFKQDESIHPFFRSQNTDYRRSGYDRGHM 102 (267)
T ss_dssp TTTCCSCCSSEEECSSCEEEEETTTTEEEEEEEEECTTTTSCCTTCCGGGCCCBCCTTSCGGGCCCHHHHTTTTCEEEES
T ss_pred eeccCcCccCcccccceEEEEccccCceeEEEEEEcHHHhcccCCCCCCcCCCCcCCCCChhhhcchhhhcccCCccccc
Confidence 79999999999999999999999999999999999998865445678876689999999999999999999999999999
Q ss_pred ccCCCccccHHhhhhhhhhhCccccCCCCCchhHHHHHHHHHHHHHhcCCCEEEEEcccccCCCCCCCceeeeeeeeCCC
Q psy10887 81 AAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKHSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDS 160 (222)
Q Consensus 81 ~p~~d~~~~~~~~~~Tf~~sNi~PQ~~~~fN~g~W~~lE~~vr~~~~~~~~l~VvtG~~~~~~~~~~g~~~~~~~~~g~~ 160 (222)
+|++|+.++++++.+||+||||+||+++.||+|+|+.||+++|+++.++++|||||||+|+++...||+++++++++|++
T Consensus 103 ~P~~d~~~~~~a~~~TF~lsNi~PQ~g~~fN~g~W~~lE~~vR~~a~~~~~vyVvTGp~~~~~~~~dg~~~~~~~~ig~~ 182 (267)
T 3ism_A 103 AAAGNHRLHQKHCDETFYLSNMAPQVGQGFNRDAWNTLEAHVRRLTKTYSNVYVCTGPLYLPHKEDDGKSYVKYEVIGAN 182 (267)
T ss_dssp SCGGGCCSCHHHHHGGGBGGGEEEECCCCCCTTHHHHHHHHHHHGGGTCSEEEEEEEEECCEEECTTSCEEEEEEEETTT
T ss_pred ccchhcccCHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHhCCcEEEEECCccCCCcCCCCcEEEEeeecCCC
Confidence 99999999988999999999999999779999999999999999999999999999999987655578888888889999
Q ss_pred cccccccceEEEEEecCCCceEEEEEEEeCCCCCCCCCccccccChHHHHHHhcCcccccc
Q psy10887 161 NVAVPTHFFKIIVAENENGKLVMENYVLPNAVISDSTPLTSFMVSTYLLKCSYIINLLIMF 221 (222)
Q Consensus 161 ~v~VP~~f~Kvv~~~~~~~~~~~~afv~pN~~~~~~~~l~~~~v~v~~IE~~tGl~ff~~~ 221 (222)
+|+||+||||||+++..++.+.++|||+||.+....++|++|+|+|++||++|||+||+..
T Consensus 183 ~V~VPt~ffKvv~~~~~~g~~~~~afv~pn~~~~~~~~l~~y~v~V~~IE~~TGldFf~~l 243 (267)
T 3ism_A 183 TVAVPTHFYKVIVGESADHKLHMESYVMPNQVISNDTPISVFQVPPESVERSAGLLFFDQI 243 (267)
T ss_dssp TEECCSEEEEEEEEECTTSCEEEEEEEEESSCCCTTSCGGGGBCCHHHHHHHHTCCSSTTS
T ss_pred CccCchHhhEEEEEecCCCcEEEEEEEecCCCCCCCCchhhEEeEHHHHHHHHCCCcCCCC
Confidence 9999999999999998777899999999999877778999999999999999999999863
No 3
>4a1n_A Nuclease EXOG, mitochondrial; hydrolase; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.5e-63 Score=432.85 Aligned_cols=218 Identities=37% Similarity=0.632 Sum_probs=197.2
Q ss_pred CCcCCCCC-CcccccCCeEEEEeCCCCceeEEEEEccccccccccCCCCCCCCCCCCcccCccccccCCCCccCCCcccc
Q psy10887 1 MKYGFPSL-DSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHEYFRGRNSDYKYSGYDRGH 79 (222)
Q Consensus 1 ~~~G~P~~-~~~l~~~~y~~~yd~~~~~p~wva~~l~~~~~~~~~~~~R~~~~f~~D~~l~~~~q~~~~dY~~sg~dRGH 79 (222)
|+||+|.. ++++.+.+|++|||..+++|+||+|+|++.... ....|+.++|++|++||..+|+.++||.+|||||||
T Consensus 23 ~~~Gfp~~~~~~l~~~~y~~~Yd~~~r~p~Wvay~L~~~~~~--~~~~R~~~~F~~D~~Ip~~~~a~~~dY~~SgydRGH 100 (335)
T 4a1n_A 23 EQFGFPLTGTEARCYTNHALSYDQAKRVPRWVLEHISKSKIM--GDADRKHCKFKPDPNIPPTFSAFNEDYVGSGWSRGH 100 (335)
T ss_dssp TTTCCCCCCCSEEECSSEEEEEETTTTEEEEEEEEECTTTTC--SSCCGGGCCCBCCTTSCTTTCCCHHHHTTTTCEEEE
T ss_pred EEecccCCCCceeeeccEEEEECcccCCeEEEEEEEeHHHcc--CCCCCCCCCCCCCCCCCcccccchhhhcCCCcceee
Confidence 79999997 588999999999999999999999999988753 345676568999999999999999999999999999
Q ss_pred cccCCCccccHHhhhhhhhhhCccccCCCCCchhHHHHHHHHHHHHHhcCCCEEEEEcccccCCCCCCCceeeeeeeeCC
Q psy10887 80 LAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKHSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGD 159 (222)
Q Consensus 80 L~p~~d~~~~~~~~~~Tf~~sNi~PQ~~~~fN~g~W~~lE~~vr~~~~~~~~l~VvtG~~~~~~~~~~g~~~~~~~~~g~ 159 (222)
|+|++|+.++.+++.+||+||||+||+ +.||+|+|++||+++|+++.+.++|||||||+|+++...||++++.+.++|+
T Consensus 101 LaP~aD~~~s~~a~~~TF~lsNi~PQ~-~~fN~g~W~~LE~~vR~~a~~~~~vyVvTGplf~p~~~~dG~~~~~y~~ig~ 179 (335)
T 4a1n_A 101 MAPAGNNKFSSKAMAETFYLSNIVPQD-FDNNSGYWNRIEMYCRELTERFEDVWVVSGPLTLPQTRGDGKKIVSYQVIGE 179 (335)
T ss_dssp SSCGGGCTTCHHHHHHTTBGGGEEEEC-HHHHHTHHHHHHHHHHHGGGTCSEEEEEEEEECCCEECTTSCEECCCCEETT
T ss_pred eccccccCCCHHHHHHHHHHhhhcccc-cccccChHHHHHHHHHHHHhhCCcEEEEECccccCcccCCCceeeeEEeecC
Confidence 999999999988899999999999999 9999999999999999999999999999999998865557887666678898
Q ss_pred CcccccccceEEEEEecCC---CceEEEEEEEeCCCCCCCCCccccccChHHHHHHhcCcccccc
Q psy10887 160 SNVAVPTHFFKIIVAENEN---GKLVMENYVLPNAVISDSTPLTSFMVSTYLLKCSYIINLLIMF 221 (222)
Q Consensus 160 ~~v~VP~~f~Kvv~~~~~~---~~~~~~afv~pN~~~~~~~~l~~~~v~v~~IE~~tGl~ff~~~ 221 (222)
++|+||+||||||+++..+ +.+.+.|||+||.+...+.+|+.|+|||++||++|||+||+..
T Consensus 180 ~~V~VPt~ffKVv~~~~~~~~~~~~a~~Afv~PN~~~~~~~~l~~y~VsV~dIE~~TGLdFf~~L 244 (335)
T 4a1n_A 180 DNVAVPSHLYKVILARRSSVSTEPLALGAFVVPNEAIGFQPQLTEFQVSLQDLEKLSGLVFFPHL 244 (335)
T ss_dssp TTEECCSEEEEEEEEESCSSCCSCEEEEEEEEESSCCCSSSCGGGGEECHHHHHHHHTCCCSTTS
T ss_pred CCccCchHhhEEEEEecCCCCCCceEEEEEEecCCCcCCCCcHhheeeeHHHHHHHHCCCcccCC
Confidence 9999999999999998753 2456779999999876677899999999999999999999863
No 4
>1zm8_A Nuclease, endonuclease; NUCA, metal dependent, hydrolase; 1.90A {Anabaena SP} PDB: 2o3b_A*
Probab=100.00 E-value=5.1e-61 Score=406.42 Aligned_cols=203 Identities=27% Similarity=0.385 Sum_probs=182.8
Q ss_pred CCcCCCCCC---------cccccCCeEEEEeCCCCceeEEEEEccccccccccCCCCCCCCCCCCcccCcc-ccccCCCC
Q psy10887 1 MKYGFPSLD---------SLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHEY-FRGRNSDY 70 (222)
Q Consensus 1 ~~~G~P~~~---------~~l~~~~y~~~yd~~~~~p~wva~~l~~~~~~~~~~~~R~~~~f~~D~~l~~~-~q~~~~dY 70 (222)
|++|+|+.. ++|++.+|++|||..+++|+||+|+|++... +..+|+ ++|++|++||.. +|+.++||
T Consensus 25 l~~G~P~~~~~~~~~~~~~ll~~~~y~~~yd~~~r~p~wva~~l~~~~~---~~~~R~-~~f~~D~~ip~~~~~~~~~dY 100 (259)
T 1zm8_A 25 LLLGNPSGATPTKLTPDNYLMVKNQYALSYNNSKGTANWVAWQLNSSWL---GNAERQ-DNFRPDKTLPAGWVRVTPSMY 100 (259)
T ss_dssp GTTCCTTCCBSCTTSTTSEEEECSSCEEEEETTTTEEEEEEEEESGGGC---CSCCCC-CCCBCCTTSCTTSCCCCGGGT
T ss_pred cCCCCCCCCCccccCCcceEEecCCEEEEEccCCCcEEEEEEEEeHHhc---CCCCCC-cCCccCCCCcccccccchhhh
Confidence 689999964 3999999999999999999999999998543 356787 799999999997 89999999
Q ss_pred ccCCCcccccccCCCccccHHhhhhhhhhhCccccCCCCCchhHHHHHHHHHHHHHhcCCCEEEEEcccccCCCCCCCce
Q psy10887 71 KYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKHSRKLLKQYPNVYVCTGPLYLPMKSPNGKK 150 (222)
Q Consensus 71 ~~sg~dRGHL~p~~d~~~~~~~~~~Tf~~sNi~PQ~~~~fN~g~W~~lE~~vr~~~~~~~~l~VvtG~~~~~~~~~~g~~ 150 (222)
.+||||||||+|++|+.++++++.+||+||||+||+ +.||+|+|++||+++|++++++++|||||||++.. |
T Consensus 101 ~~sg~dRGHL~P~ad~~~s~~a~~~TF~lsNi~PQ~-~~fN~g~W~~lE~~vr~~a~~~~~v~VvTGp~~~~-----g-- 172 (259)
T 1zm8_A 101 SGSGYARGHIAPSADRTKTTEDNAATFLMTNMMPQT-PDNNRNTWGNLEDYCRELVSQGKELYIVAGPNGSL-----G-- 172 (259)
T ss_dssp TTSSCEEEESSCGGGCCSSHHHHHHTTBGGGEEEEC-HHHHHTHHHHHHHHHHHHHHHTCCEEEEEEEESCC-----S--
T ss_pred cccCCcccccccccccccCHHHHHHHHHHhhcccch-hhHhHHHHHHHHHHHHHHHHhCCcEEEEECcccCC-----C--
Confidence 999999999999999999988999999999999999 99999999999999999999999999999999853 2
Q ss_pred eeeeeeeCCCcccccccceEEEEEecCCC--------ceEEEEEEEeCCCCCCCCCccccccChHHHHHHhcCcccccc
Q psy10887 151 YVNYEVIGDSNVAVPTHFFKIIVAENENG--------KLVMENYVLPNAVISDSTPLTSFMVSTYLLKCSYIINLLIMF 221 (222)
Q Consensus 151 ~~~~~~~g~~~v~VP~~f~Kvv~~~~~~~--------~~~~~afv~pN~~~~~~~~l~~~~v~v~~IE~~tGl~ff~~~ 221 (222)
.+++++|+||+||||||+++..++ .+.++|||+||.+... .+|+.|+|||+|||++|||+||+..
T Consensus 173 -----~i~~~~V~VP~~f~Kvv~~~~~~~~~~~~~~~~~~~~afv~pn~~~~~-~~l~~~~vsV~~iE~~TGl~Ff~~l 245 (259)
T 1zm8_A 173 -----KPLKGKVTVPKSTWKIVVVLDSPGSGLEGITANTRVIAVNIPNDPELN-NDWRAYKVSVDELESLTGYDFLSNV 245 (259)
T ss_dssp -----SCBTTTBCCCSEEEEEEEECSSTTCGGGGCCTTCCEEEEEEECCSSCC-SCGGGGBCCHHHHHHHHCCCTTTTS
T ss_pred -----cCCCCceeCChHHhEEEEEccCCCcccccccCCceEEEEEcCCCcccC-CchheeeeEHHHHHHHHCCCcCCCC
Confidence 245678999999999999987642 5789999999998653 4899999999999999999999864
No 5
>1g8t_A Nuclease SM2 isoform; endonuclease, hydrolase, magnesium, signal; 1.10A {Serratia marcescens} SCOP: d.4.1.2 PDB: 1qae_A 1smn_A 1ql0_A
Probab=100.00 E-value=1.4e-59 Score=395.18 Aligned_cols=204 Identities=24% Similarity=0.380 Sum_probs=179.7
Q ss_pred CCcCCCC---CCcccccCCeEEEEeCCCCceeEEEEEccccccccccCCCCCCCCCCCCcccCccccccCCCCccC----
Q psy10887 1 MKYGFPS---LDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHEYFRGRNSDYKYS---- 73 (222)
Q Consensus 1 ~~~G~P~---~~~~l~~~~y~~~yd~~~~~p~wva~~l~~~~~~~~~~~~R~~~~f~~D~~l~~~~q~~~~dY~~s---- 73 (222)
|+||+|+ .+++|.+..|++|||..+++|+||+|+|+++... ..|+ ++|++|++||..+|+.++||.++
T Consensus 9 ~~~G~P~~~~~~~~l~~~~y~~~yd~~~~~p~wva~~l~~~~~~----~~r~-~~f~~D~~i~~~~~~~~~dY~~s~~~~ 83 (245)
T 1g8t_A 9 CAVGCPTGGSSNVSIVRHAYTLNNNSTTKFANWVAYHITKDTPA----SGKT-RNWKTDPALNPADTLAPADYTGANAAL 83 (245)
T ss_dssp SSSCCCBCCSCSSCEECSSCEEEECTTTSSEEEEEEEECTTSCC----CSCC-CCCBCCTTSCGGGSCCGGGGTTHHHHH
T ss_pred CCCCCCCCCCCCceEeeCcEEEEEccccCcEEEEEEEEEhhhcC----CCCC-CCCcCCCCCChHhccCHHHhcCCcccc
Confidence 6899999 4689999999999999999999999999998753 2565 68999999999999999999998
Q ss_pred CCcccccccCCCccccHHhhhhhhhhhCccccCCCCCchhHHHHHHHHHHHHHhcCC--CEEEEEcccccCCCCCCCcee
Q psy10887 74 GYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKHSRKLLKQYP--NVYVCTGPLYLPMKSPNGKKY 151 (222)
Q Consensus 74 g~dRGHL~p~~d~~~~~~~~~~Tf~~sNi~PQ~~~~fN~g~W~~lE~~vr~~~~~~~--~l~VvtG~~~~~~~~~~g~~~ 151 (222)
|||||||+|++|+.++ +++.+||+||||+||+ +.||+|+|++||+++|+++.+.+ +|||||||+|.++. +.
T Consensus 84 g~dRGHL~P~ad~~~~-~~~~~TF~lsNi~PQ~-~~fN~g~W~~lE~~vR~~a~~~~~~~v~VvTGp~~~~~~---~~-- 156 (245)
T 1g8t_A 84 KVDRGHQAPLASLAGV-SDWESLNYLSNITPQK-SDLNQGAWARLEDQERKLIDRADISSVYTVTGPLYERDM---GK-- 156 (245)
T ss_dssp CEEEEESSCHHHHTTS-TTGGGGGBGGGEEEEE-HHHHTTHHHHHHHHHHHGGGSTTCCCEEEEEEEECCSCC---CC--
T ss_pred cccccCcCcccccccH-HHHHHHHHHHHhccch-hhHhHHHHHHHHHHHHHHHHhCCCCeEEEEeCceecCCC---ce--
Confidence 9999999999998775 5789999999999999 99999999999999999998866 99999999997542 21
Q ss_pred eeeeeeCCCccc-ccccceEEEEEecCCCceEEEEEEEeCCCCCCCCCccccccChHHHHHHhcCcccccc
Q psy10887 152 VNYEVIGDSNVA-VPTHFFKIIVAENENGKLVMENYVLPNAVISDSTPLTSFMVSTYLLKCSYIINLLIMF 221 (222)
Q Consensus 152 ~~~~~~g~~~v~-VP~~f~Kvv~~~~~~~~~~~~afv~pN~~~~~~~~l~~~~v~v~~IE~~tGl~ff~~~ 221 (222)
..++++|. ||+||||||++++.+++..++|||+||+. ....+|..|+|||+|||++|||+||+..
T Consensus 157 ----~~~~~~v~pVP~~f~Kvv~~~~~~~~~~~~afv~pn~~-~~~~~l~~~~vsv~~iE~~TGl~Ff~~l 222 (245)
T 1g8t_A 157 ----LPGTQKAHTIPSAYWKVIFINNSPAVNHYAAFLFDQNT-PKGADFCQFRVTVDEIEKRTGLIIWAGL 222 (245)
T ss_dssp ----CTTCCSCCCCCSEEEEEEEETTCTTTBCEEEEEEETTC-CTTCCGGGGBCCHHHHHHHHSCBSSTTS
T ss_pred ----ecCCCCeeeCChhheEEEEEccCCCCeeEEEEEecCCC-ccccccceeeeeHHHHHHHHCCCcCcCC
Confidence 23455675 99999999999876666789999999975 3456799999999999999999999864
No 6
>4gtw_A Ectonucleotide pyrophosphatase/phosphodiesterase member 2, alkaline phosphodiesterase...; bone mineralization, hydrolase; HET: NAG BMA MAN AMP; 2.70A {Mus musculus} PDB: 4gtx_A* 4gty_A* 4gtz_A* 4b56_A*
Probab=100.00 E-value=4.5e-53 Score=407.61 Aligned_cols=215 Identities=18% Similarity=0.214 Sum_probs=179.3
Q ss_pred CCcCCCCC------CcccccCCeEEEEeCCCCceeEEEEEccccccccccCCCCCCCCCCCCcccCccccccCCCCc-cC
Q psy10887 1 MKYGFPSL------DSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHEYFRGRNSDYK-YS 73 (222)
Q Consensus 1 ~~~G~P~~------~~~l~~~~y~~~yd~~~~~p~wva~~l~~~~~~~~~~~~R~~~~f~~D~~l~~~~q~~~~dY~-~s 73 (222)
++||+|+. .+||.+..|+++||..+++|+||+|+|++.... ....|+ ++|++|++||..+++.++||. +|
T Consensus 555 ~p~g~p~~~~~~~~~~ll~~~~y~~~y~~~~~~p~Wv~~~l~~~~~~--~~~~r~-~~f~~D~~ip~~~~~~~~~y~~~s 631 (823)
T 4gtw_A 555 VPYGRPRILLKQHRVCLLQQQQFLTGYSLDLLMPLWASYTFLSNDQF--SRDDFS-NCLYQDLRIPLSPVHKCSYYKSNS 631 (823)
T ss_dssp CTTCCCEECCSSCEEEEEECSSEEEEEETTTTEEEEEEEEECSCC---------C-CCCBCCTTSCCCTTSSGGGCCSSS
T ss_pred CCCCCCcccccCCceEEEeehhhhhhhhhhcCCeeeEEEEecchhcC--CCcccC-cCcccCCCCCccccccchhhccCC
Confidence 68999984 269999999999999999999999999998763 345676 689999999999999999996 69
Q ss_pred CCcccccccCCCccccHHhhhhhhhhhCccccCCCCCchhHHHHHHHHHHHHHhcCCCEEEEEcccccCCCCCCCc----
Q psy10887 74 GYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKHSRKLLKQYPNVYVCTGPLYLPMKSPNGK---- 149 (222)
Q Consensus 74 g~dRGHL~p~~d~~~~~~~~~~Tf~~sNi~PQ~~~~fN~g~W~~lE~~vr~~~~~~~~l~VvtG~~~~~~~~~~g~---- 149 (222)
|||||||+|++|+.++++++.+||+||||+||. +.||++.|..||.++|+|+++.++|||||||+|+++. ||.
T Consensus 632 g~drGHl~P~~d~~~s~~~~~~tf~~sNi~Pq~-~~fn~~~w~~lE~~~r~~~~~~~~v~VvtGpifd~~~--dg~~d~~ 708 (823)
T 4gtw_A 632 KLSYGFLTPPRLNRVSNHIYSEALLTSNIVPMY-QSFQVIWHYLHDTLLQRYAHERNGINVVSGPVFDFDY--DGRYDSL 708 (823)
T ss_dssp SEEEEESSCTTCC----CCCSGGGBGGGEEEEE-HHHHHHHHHHHHTHHHHHHHHTTCEEEEEEEECCTTC--SSSCCCH
T ss_pred CcceeccCChhhcccCHHHHHHHHHHHHcccch-HhHhHHHHHHHHHHHHHHHHhCCcEEEEeCcccccCC--CCccCCc
Confidence 999999999999999999999999999999999 9999999999999999999999999999999997643 332
Q ss_pred --eeeeeeeeCCCcccccccceEEEEEecCC-------CceEEEEEEEeCCCCCCC-------------CCccccccChH
Q psy10887 150 --KYVNYEVIGDSNVAVPTHFFKIIVAENEN-------GKLVMENYVLPNAVISDS-------------TPLTSFMVSTY 207 (222)
Q Consensus 150 --~~~~~~~~g~~~v~VP~~f~Kvv~~~~~~-------~~~~~~afv~pN~~~~~~-------------~~l~~~~v~v~ 207 (222)
.......+|+++|+||+||||||+.+++. +.++++|||+||.+.... +.|..|+|+|+
T Consensus 709 ~~~~~~~~~i~~~~v~VPthffkvi~~~~~~~~~~~~~~~~~~~aFi~Pn~~~~~~~~~~~~~~~~~~~~~l~~~~~sV~ 788 (823)
T 4gtw_A 709 EILKQNSRVIRSQEILIPTHFFIVLTSCKQLSETPLECSALESSAYILPHRPDNIESCTHGKRESSWVEELLTLHRARVT 788 (823)
T ss_dssp HHHHHTCEEETTEEECCCSEEEEEEEEESSTTSCTTSCSSEEEEEEEEECCSSCTTTTCTTCCHHHHHHHHHHHTEECHH
T ss_pred ccccccceeecCCcccCCCeeEEEEEEccCCCcCCCCCCCeeEEEEEecCCCCCccccccccccchhhhhHHHhccccHH
Confidence 11223567888999999999999987652 358999999999875322 23788999999
Q ss_pred HHHHHhcCcccccc
Q psy10887 208 LLKCSYIINLLIMF 221 (222)
Q Consensus 208 ~IE~~tGl~ff~~~ 221 (222)
|||++|||+||+..
T Consensus 789 diE~~TGl~Ff~~l 802 (823)
T 4gtw_A 789 DVELITGLSFYQDR 802 (823)
T ss_dssp HHHHHHTEECCTTC
T ss_pred HHHHHhCccccCCC
Confidence 99999999999863
No 7
>3nkq_A Ectonucleotide pyrophosphatase/phosphodiesterase member 2; lysophospholipase D, autotaxin, ENPP2, lysophosphatidic acid hydrolase; HET: NAG BMA MAN NKQ; 1.70A {Mus musculus} PDB: 3nkm_A* 3nkn_A* 3nkp_A* 3nko_A* 3nkr_A* 2xrg_A* 2xr9_A*
Probab=100.00 E-value=1.4e-52 Score=403.38 Aligned_cols=213 Identities=19% Similarity=0.305 Sum_probs=183.3
Q ss_pred CCcCCCCCC-----cccccCCeEEEEeCCCCceeEEEEEccccccccccCCCCCCCCCCCCcccCccccccCCCCccC-C
Q psy10887 1 MKYGFPSLD-----SLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHEYFRGRNSDYKYS-G 74 (222)
Q Consensus 1 ~~~G~P~~~-----~~l~~~~y~~~yd~~~~~p~wva~~l~~~~~~~~~~~~R~~~~f~~D~~l~~~~q~~~~dY~~s-g 74 (222)
|+||+|+.. +||.+.+|+++||..+++|+||+|+|++..........|+ ++|++|++||..+|+.++||++| |
T Consensus 557 l~~G~P~~~~~~~~~ll~~~~y~~~y~~~~r~p~Wvay~l~~~~~~~~~~~~r~-~~f~~D~~ip~~~~~~~~dY~~s~g 635 (831)
T 3nkq_A 557 LLYGRPAVLYRTSYDILYHTDFESGYSEIFLMPLWTSYTISKQAEVSSIPEHLT-NCVRPDVRVSPGFSQNCLAYKNDKQ 635 (831)
T ss_dssp CTTCCCEECSSCCEEEEECSSCEEEEETTTTEEEEEEEEECTTCCCCCCCGGGT-TCCBCCTTSCGGGSCCHHHHHHCSS
T ss_pred eecCCCccccccceeEEeccceEEEeccccCceeEEEEEEcHHHccCCCCCccC-CCceeCCCCChHhcCChhhhcCCCC
Confidence 799999963 4899999999999999999999999999764322234565 68999999999999999999999 9
Q ss_pred CcccccccCCCccccHHhhhhhhhhhCccccCCCCCchhHHHHHHHHH-HHHHhcCCCEEEEEcccccCCCCCCCce---
Q psy10887 75 YDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEKHS-RKLLKQYPNVYVCTGPLYLPMKSPNGKK--- 150 (222)
Q Consensus 75 ~dRGHL~p~~d~~~~~~~~~~Tf~~sNi~PQ~~~~fN~g~W~~lE~~v-r~~~~~~~~l~VvtG~~~~~~~~~~g~~--- 150 (222)
||||||+|++|+..+ +++.+||+||||+||+ +.||+ +|++||+.+ |+++++.++|||||||+|+++. ||+.
T Consensus 636 ~dRGHl~p~~d~~~~-~~~~~tf~~sNi~PQ~-~~fN~-~W~~lE~~~~r~~~~~~~~v~VvtGpi~~~~~--dg~~d~~ 710 (831)
T 3nkq_A 636 MSYGFLFPPYLSSSP-EAKYDAFLVTNMVPMY-PAFKR-VWTYFQRVLVKKYASERNGVNVISGPIFDYNY--NGLRDIE 710 (831)
T ss_dssp CEEEESSCGGGCSST-TTHHHHTBGGGEEEEC-HHHHH-HHHHHHHTHHHHHHHHHTSEEEEEEEECCTTC--SSSCCCG
T ss_pred cCceecCCcccCcch-HHHHHHHHHHhhcccc-hHHHH-HHHHHHHHHHHHHHHhCCCEEEEeCcccCCCc--CCccCcc
Confidence 999999999999876 4667999999999999 99999 999999997 9999999999999999998653 4432
Q ss_pred -eeeeeeeCCCcccccccceEEEEEecC--------CCceEEEEEEEeCCCCCC-------------CCCccccccChHH
Q psy10887 151 -YVNYEVIGDSNVAVPTHFFKIIVAENE--------NGKLVMENYVLPNAVISD-------------STPLTSFMVSTYL 208 (222)
Q Consensus 151 -~~~~~~~g~~~v~VP~~f~Kvv~~~~~--------~~~~~~~afv~pN~~~~~-------------~~~l~~~~v~v~~ 208 (222)
.++ +.+|+++|+||+||||||+.++. ++.++++|||+||.+... +++|..|+|+|+|
T Consensus 711 ~~i~-~~ig~~~v~VPt~ffKvi~~~~~~~~~~~~~~g~~~~~afv~pn~~~~~~~c~~~~~~~~wv~~~l~~~~v~V~~ 789 (831)
T 3nkq_A 711 DEIK-QYVEGSSIPVPTHYYSIITSCLDFTQPADKCDGPLSVSSFILPHRPDNDESCNSSEDESKWVEELMKMHTARVRD 789 (831)
T ss_dssp GGCC-CBSTTSCCBCCSEEEEEEEEESSTTSCGGGCCSCEEEEEEEEECCSSCTTCTTTTSCGGGTHHHHHHHTEECHHH
T ss_pred hhee-eecCCCCcCChhHhheEEEEcccCCcCcccCCCceEEEEEEecCCCCccccccccccccccccchHhheeccHHH
Confidence 232 46777899999999999998654 356899999999998643 1357899999999
Q ss_pred HHHHhcCccccc
Q psy10887 209 LKCSYIINLLIM 220 (222)
Q Consensus 209 IE~~tGl~ff~~ 220 (222)
||++|||+||++
T Consensus 790 IE~~TGldFf~~ 801 (831)
T 3nkq_A 790 IEHLTGLDFYRK 801 (831)
T ss_dssp HHHHHCEECCCS
T ss_pred HHHHhCcCcccC
Confidence 999999999986
No 8
>2xgr_A SPD1 nuclease, putative DNAse; hydrolase, metal binding; 1.70A {Streptococcus pyogenes serotype M1} PDB: 2xh3_A
Probab=89.21 E-value=0.5 Score=38.93 Aligned_cols=62 Identities=18% Similarity=0.025 Sum_probs=41.1
Q ss_pred cCCCcccccccCCCccccHHhhhhhhhhhCccccCCCCCch-----------hHHHHHHHHHHHHHhc--CCCEEEEEcc
Q psy10887 72 YSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNR-----------DKWAELEKHSRKLLKQ--YPNVYVCTGP 138 (222)
Q Consensus 72 ~sg~dRGHL~p~~d~~~~~~~~~~Tf~~sNi~PQ~~~~fN~-----------g~W~~lE~~vr~~~~~--~~~l~VvtG~ 138 (222)
+--|+||||.+-.-. +. + --.-|++||- +-+|+ +-....|+.|+++.+. ...|..-.=|
T Consensus 114 ~~l~NRgHLIgyqL~--G~--n---~n~kNLvT~T-r~~N~G~~~~~~~~n~~gM~yyE~~V~~~l~~~~n~~V~YrVTP 185 (252)
T 2xgr_A 114 SWVMNRGHLVGYQFC--GL--N---DEPRNLVAMT-AWLNTGAYSGANDSNPEGMLYYENRLDSWLALHPDFWLDYKVTP 185 (252)
T ss_dssp -CBCCEEESSCHHHH--CC--S---SCGGGEEECC-HHHHHSSSSSCCTTCTTSHHHHHHHHHHHHHHCTTSEEEEEEEE
T ss_pred ccccccceEEEEecc--CC--C---CCccceeecc-hhhcccccccccccCcchhHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 345899999875311 11 1 1235899997 76776 4567999999998765 3456555668
Q ss_pred ccc
Q psy10887 139 LYL 141 (222)
Q Consensus 139 ~~~ 141 (222)
||.
T Consensus 186 IY~ 188 (252)
T 2xgr_A 186 IYS 188 (252)
T ss_dssp ECC
T ss_pred eec
Confidence 884
No 9
>3owv_A DNA-entry nuclease; sequence nonspecific endonuclease, hydrolase; 1.75A {Streptococcus pneumoniae}
Probab=48.84 E-value=2.3 Score=34.79 Aligned_cols=68 Identities=25% Similarity=0.096 Sum_probs=40.9
Q ss_pred CCCcccccccCCCccccHHhhhhhhhhhCccccCCCCCchh------HHHHHHHHHHHHHhcCCCEEEEEccccc
Q psy10887 73 SGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRD------KWAELEKHSRKLLKQYPNVYVCTGPLYL 141 (222)
Q Consensus 73 sg~dRGHL~p~~d~~~~~~~~~~Tf~~sNi~PQ~~~~fN~g------~W~~lE~~vr~~~~~~~~l~VvtG~~~~ 141 (222)
--|+||||..-.-.........+.----|+++|- +-.|.+ -=...|+.||++.+....|.--.=|+|.
T Consensus 128 ~l~NRgHLIgyqL~G~~~~~d~sn~n~kNLvTgT-r~~N~~~~~~~~gm~~yE~~V~~~L~~n~~V~YrVTPIY~ 201 (248)
T 3owv_A 128 HAVDRGALLGYALIGGLDGFDASTSNPKNIAVQT-AWANQAQAEYSTGQNYYESKVRKALDQNKRVRYRVTLYYA 201 (248)
T ss_dssp SSEEEEESSCHHHHTTSTTCCCSTTCTTTEEEEE-HHHHHCEETTEECHHHHHHHHHHHHHTTCCEEEEEEEECS
T ss_pred eeccccceehhhhcCCccccccccCCcccccccc-hhhcccCCCCcchhHHHHHHHHHHHhCCCEEEEEEeeccc
Confidence 3589999987521100000001111234788888 777763 3458999999998876666665667875
No 10
>1iie_A Protein (HLA-DR antigens associated invariant chain); major histocompatibility complex, antigen processing, oligomerization, chaperonin; NMR {Homo sapiens} SCOP: a.109.1.1
Probab=39.09 E-value=23 Score=23.19 Aligned_cols=14 Identities=21% Similarity=0.397 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHH
Q psy10887 113 DKWAELEKHSRKLL 126 (222)
Q Consensus 113 g~W~~lE~~vr~~~ 126 (222)
-.|+.+|.|.|.|.
T Consensus 43 ~dWk~FEsWM~~WL 56 (75)
T 1iie_A 43 IDWKVFESWMHHWL 56 (75)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHH
Confidence 48999999999874
No 11
>2jo7_A Glycosylphosphatidylinositol-anchored merozoite surface protein; surface antigen, GPI-anchored protein, recombinant vaccine; NMR {Babesia divergens}
Probab=22.56 E-value=59 Score=25.31 Aligned_cols=33 Identities=24% Similarity=0.415 Sum_probs=26.5
Q ss_pred hhhhhhhCccccCCCCCchhHHHHHHHHHHHHHhcC
Q psy10887 94 DQTFVLSNISPQVGAGFNRDKWAELEKHSRKLLKQY 129 (222)
Q Consensus 94 ~~Tf~~sNi~PQ~~~~fN~g~W~~lE~~vr~~~~~~ 129 (222)
-.-|+ .+|-+|...|.-.|+.+|..+.+.....
T Consensus 161 is~~L---tvPeYG~pmna~kwk~vE~kI~dkless 193 (224)
T 2jo7_A 161 ISGYL---TVPEYGAPMNAAKWKKVEGMIHGKLESS 193 (224)
T ss_dssp HHHHH---HCCSTTCCTTTCHHHHHHHHHHHHHTSS
T ss_pred HHhHh---cCcccCCCccHHHHHHHHHHHHhhhhcc
Confidence 44555 6899999999999999999998765443
Done!