RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10887
(222 letters)
>3ism_A CG8862; endonuclease, endonuclease inhibitor complex, metal
complex, hydrolase, hydrolase inhibitor-hydrolase
complex; 2.20A {Drosophila melanogaster}
Length = 267
Score = 235 bits (601), Expect = 2e-78
Identities = 131/205 (63%), Positives = 163/205 (79%)
Query: 1 MKYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIH 60
MKYGFP LD +RS D+VLSYDRRNR +WVFEHLT E+ A ++AV+RSK +F +D+SIH
Sbjct: 23 MKYGFPGLDHVRSHSDYVLSYDRRNRVPHWVFEHLTAESVAKNDAVDRSKCDFKQDESIH 82
Query: 61 EYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEK 120
+FR +N+DY+ SGYDRGH+AAAGNH+ +QKH D+TF LSN++PQVG GFNRD W LE
Sbjct: 83 PFFRSQNTDYRRSGYDRGHMAAAGNHRLHQKHCDETFYLSNMAPQVGQGFNRDAWNTLEA 142
Query: 121 HSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGK 180
H R+L K Y NVYVCTGPLYLP K +GK YV YEVIG + VAVPTHF+K+IV E+ + K
Sbjct: 143 HVRRLTKTYSNVYVCTGPLYLPHKEDDGKSYVKYEVIGANTVAVPTHFYKVIVGESADHK 202
Query: 181 LVMENYVLPNAVISDSTPLTSFMVS 205
L ME+YV+PN VIS+ TP++ F V
Sbjct: 203 LHMESYVMPNQVISNDTPISVFQVP 227
>3s5b_A Endonuclease G; DNA fragmentation, DNAse, protein-DNA interactions
beta-alpha-metal finger nuclease, hydrolase,
mitochondria; 1.80A {Caenorhabditis elegans}
Length = 249
Score = 228 bits (583), Expect = 4e-76
Identities = 113/205 (55%), Positives = 151/205 (73%)
Query: 1 MKYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIH 60
MK+G+P ++R+++DFVLSYD + RTA+WV EHLT E ++E V+R EF D +
Sbjct: 16 MKHGYPGFTNVRTYEDFVLSYDYKTRTAHWVCEHLTPERLKHAEGVDRKLCEFKPDITFP 75
Query: 61 EYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELEK 120
+ F +N+DYK SG+DRGHLAAAGNH+ +Q +DQTF LSN+SPQVG GFNRDKW +LE
Sbjct: 76 QKFLSQNTDYKCSGFDRGHLAAAGNHRKSQLAVDQTFYLSNMSPQVGRGFNRDKWNDLEM 135
Query: 121 HSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGK 180
H R++ K+ N Y+ TGPLYLP +GKKY+ Y+VIGD+NVAVPTHFFK+ + E GK
Sbjct: 136 HCRRVAKKMINSYIITGPLYLPKLEGDGKKYIKYQVIGDNNVAVPTHFFKVALFEVTPGK 195
Query: 181 LVMENYVLPNAVISDSTPLTSFMVS 205
+E+Y+LPNAVI D+ ++ F V
Sbjct: 196 FELESYILPNAVIEDTVEISKFHVP 220
>4a1n_A Nuclease EXOG, mitochondrial; hydrolase; 2.80A {Homo sapiens}
Length = 335
Score = 204 bits (520), Expect = 2e-65
Identities = 80/209 (38%), Positives = 117/209 (55%), Gaps = 7/209 (3%)
Query: 1 MKYGFPSL-DSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSI 59
++GFP R + + LSYD+ R WV EH++K +R +F D +I
Sbjct: 23 EQFGFPLTGTEARCYTNHALSYDQAKRVPRWVLEHISKSKIMGD--ADRKHCKFKPDPNI 80
Query: 60 HEYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELE 119
F N DY SG+ RGH+A AGN+K + K + +TF LSNI PQ N W +E
Sbjct: 81 PPTFSAFNEDYVGSGWSRGHMAPAGNNKFSSKAMAETFYLSNIVPQDF-DNNSGYWNRIE 139
Query: 120 KHSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENG 179
+ R+L +++ +V+V +GPL LP +GKK V+Y+VIG+ NVAVP+H +K+I+A +
Sbjct: 140 MYCRELTERFEDVWVVSGPLTLPQTRGDGKKIVSYQVIGEDNVAVPSHLYKVILARRSSV 199
Query: 180 ---KLVMENYVLPNAVISDSTPLTSFMVS 205
L + +V+PN I LT F VS
Sbjct: 200 STEPLALGAFVVPNEAIGFQPQLTEFQVS 228
>1g8t_A Nuclease SM2 isoform; endonuclease, hydrolase, magnesium, signal;
1.10A {Serratia marcescens} SCOP: d.4.1.2 PDB: 1qae_A
1smn_A 1ql0_A
Length = 245
Score = 157 bits (398), Expect = 4e-48
Identities = 47/215 (21%), Positives = 79/215 (36%), Gaps = 27/215 (12%)
Query: 1 MKYGFPSLDS---LRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDD 57
G P+ S + L+ + + A WV H+TK+ A + + D
Sbjct: 9 CAVGCPTGGSSNVSIVRHAYTLNNNSTTKFANWVAYHITKDTPA-----SGKTRNWKTDP 63
Query: 58 SIHEYFRGRNSDYKYSG----YDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRD 113
+++ +DY + DRGH A + + LSNI+PQ + N+
Sbjct: 64 ALNPADTLAPADYTGANAALKVDRGHQAPLASLA-GVSDWESLNYLSNITPQK-SDLNQG 121
Query: 114 KWAELEKHSRKLLKQY--PNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSN-VAVPTHFFK 170
WA LE RKL+ + +VY TGPLY ++ G +P+ ++K
Sbjct: 122 AWARLEDQERKLIDRADISSVYTVTGPLYERD---------MGKLPGTQKAHTIPSAYWK 172
Query: 171 IIVAENENGKLVMENYVLPNAVISDSTPLTSFMVS 205
+I N ++ F V+
Sbjct: 173 VIFINNSPAVNHYAAFLFDQN-TPKGADFCQFRVT 206
>1zm8_A Nuclease, endonuclease; NUCA, metal dependent, hydrolase; 1.90A
{Anabaena SP} PDB: 2o3b_A*
Length = 259
Score = 157 bits (398), Expect = 5e-48
Identities = 50/214 (23%), Positives = 82/214 (38%), Gaps = 27/214 (12%)
Query: 1 MKYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIH 60
+ L + + LSY+ TA WV L +E + F D ++
Sbjct: 34 TPTKLTPDNYLMVKNQYALSYNNSKGTANWVAWQLNSSWLGNAERQDN----FRPDKTLP 89
Query: 61 E-YFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELE 119
+ R S Y SGY RGH+A + + + TF+++N+ PQ NR+ W LE
Sbjct: 90 AGWVRVTPSMYSGSGYARGHIAPSADRTKTTEDNAATFLMTNMMPQTP-DNNRNTWGNLE 148
Query: 120 KHSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENG 179
+ R+L+ Q +Y+ GP K V VP +KI+V + G
Sbjct: 149 DYCRELVSQGKELYIVAGPNGSLGK------------PLKGKVTVPKSTWKIVVVLDSPG 196
Query: 180 KLV--------MENYVLPNAVISDSTPLTSFMVS 205
+ + +PN + ++ VS
Sbjct: 197 SGLEGITANTRVIAVNIPNDPELN-NDWRAYKVS 229
>3nkq_A Ectonucleotide pyrophosphatase/phosphodiesterase member 2;
lysophospholipase D, autotaxin, ENPP2, lysophosphatidic
acid hydrolase; HET: NAG BMA MAN NKQ; 1.70A {Mus
musculus} PDB: 3nkm_A* 3nkn_A* 3nkp_A* 3nko_A* 3nkr_A*
2xrg_A* 2xr9_A*
Length = 831
Score = 145 bits (365), Expect = 4e-40
Identities = 36/229 (15%), Positives = 75/229 (32%), Gaps = 28/229 (12%)
Query: 1 MKYGFPSLDSLRSFDDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIH 60
+ + + DF Y W ++K+ S + + + D +
Sbjct: 562 PAVLYRTSYDILYHTDFESGYSEIFLMPLWTSYTISKQAEVSSIPEHLT-NCVRPDVRVS 620
Query: 61 EYFRGRNSDYK-YSGYDRGHLAAAGNHKANQKHLDQTFVLSNISPQVGAGFNRDKWAELE 119
F YK G L + + D F+++N+ P F R W +
Sbjct: 621 PGFSQNCLAYKNDKQMSYGFLFPPYLSSSPEAKYD-AFLVTNMVPMY-PAFKRV-WTYFQ 677
Query: 120 -KHSRKLLKQYPNVYVCTGPLYLPMKSPNGKKYVN-YEVIGDSNVAVPTHFFKIIVAENE 177
+K + V V +GP++ + + + S++ VPTH++ II + +
Sbjct: 678 RVLVKKYASERNGVNVISGPIFDYNYNGLRDIEDEIKQYVEGSSIPVPTHYYSIITSCLD 737
Query: 178 N--------GKLVMENYVLPNAVISDST-------------PLTSFMVS 205
G L + +++LP+ +D + +
Sbjct: 738 FTQPADKCDGPLSVSSFILPHRPDNDESCNSSEDESKWVEELMKMHTAR 786
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.002
Identities = 41/244 (16%), Positives = 77/244 (31%), Gaps = 63/244 (25%)
Query: 8 LDSLRS------FDDFVLSYDRRNRTAY--WVFEHLTKENTAYSEAVNRSKSEFFEDDSI 59
D +S D ++S D + T W L+K+ +F E+
Sbjct: 39 QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL--LSKQEEMV--------QKFVEE--- 85
Query: 60 HEYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLD-QTFV-----LSNISPQVGAGFNRD 113
+YK+ L + + Q + + ++ L N QV A +N
Sbjct: 86 -----VLRINYKF-------LMSPIKTEQRQPSMMTRMYIEQRDRLYN-DNQVFAKYNVS 132
Query: 114 KWAELEKHSRKLLKQYPNVYVCT-GPLYLPMKSPNGKKYVNYEVIGDSNV--AVPTHFFK 170
+ K + LL+ P V G + +GK +V +V V + F
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDG-----VLG-SGKTWVALDVCLSYKVQCKMDFKIFW 186
Query: 171 IIVAENENGKLVMENYV-LPNAVISDSTPLTSFMVST-------------YLLKCSYIIN 216
+ + + + V+E L + + T + + L Y
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 217 LLIM 220
LL++
Sbjct: 247 LLVL 250
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.079
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 15/32 (46%)
Query: 119 EKHS-RKL---LKQYPNVYVCTGPLYLPMKSP 146
EK + +KL LK LY +P
Sbjct: 18 EKQALKKLQASLK-----------LYADDSAP 38
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.16
Identities = 24/142 (16%), Positives = 43/142 (30%), Gaps = 50/142 (35%)
Query: 40 TAYSEAVNRSKSEFFE--DDSIHEYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTF 97
TA + A S FF +I F + G R + A L +
Sbjct: 279 TAVAIAETDSWESFFVSVRKAITVLF--------FIGV-RCYEAYP------NTSLPPSI 323
Query: 98 VLSNI-------SPQVG-AGFNRDKWAELEKHSRKL-------------LKQYPNVYVCT 136
+ ++ SP + + ++ +++ + K L V +
Sbjct: 324 LEDSLENNEGVPSPMLSISNLTQE---QVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS 380
Query: 137 GP---LY------LPMKSPNGK 149
GP LY K+P+G
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGL 402
Score = 28.1 bits (62), Expect = 2.6
Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 24/102 (23%)
Query: 112 RDKWAELEKHSRKLL--------KQYP-NVYVCTGPLYLPMKSPNGKK-YVNY-EVIGDS 160
+D W + H + P N+ + G GK+ NY +I ++
Sbjct: 1643 QDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGG-------EKGKRIRENYSAMIFET 1695
Query: 161 NVAVPTHFFKIIVAENENGKLVMENYVLPNAVISDSTPLTSF 202
V KI NE+ + ++S T F
Sbjct: 1696 IVDGKLKTEKIFKEINEHSTSYT--FRSEKGLLS----ATQF 1731
>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein
(globulins) family, SEED storage PR plant protein; 2.27A
{Amaranthus hypochondriacus}
Length = 465
Score = 30.6 bits (68), Expect = 0.37
Identities = 10/73 (13%), Positives = 25/73 (34%), Gaps = 8/73 (10%)
Query: 132 VYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGKLVMENYVLPNA 191
+Y G + + + G+ + E+ V VP +F + A + + V +
Sbjct: 348 MYCVRGRGRIQIVNDQGQSVFDEELSRGQLVVVPQNFAIVKQAFEDGFEWV--------S 399
Query: 192 VISDSTPLTSFMV 204
+ + +
Sbjct: 400 FKTSENAMFQSLA 412
>3ksc_A LEGA class, prolegumin; PEA prolegumin, 11S SEED storage protein,
pisum sativum L., SEED storage protein, storage protein,
plant protein; 2.61A {Pisum sativum}
Length = 496
Score = 29.9 bits (66), Expect = 0.63
Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 1/75 (1%)
Query: 132 VYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGKLVMENYVLPNA 191
+Y G L + + NG + E+ + VP ++ + ++ V A
Sbjct: 383 IYALKGRARLQVVNCNGNTVFDGELEAGRALTVPQNYAVAAKSLSDRFSYV-AFKTNDRA 441
Query: 192 VISDSTPLTSFMVST 206
I+ +S + +
Sbjct: 442 GIARLAGTSSVINNL 456
>2e9q_A 11S globulin subunit beta; cucubitin, pumpkin SEED storage
globulin, plant protein; 2.20A {Cucurbita maxima} PDB:
2evx_A
Length = 459
Score = 29.5 bits (65), Expect = 0.80
Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 1/75 (1%)
Query: 132 VYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGKLVMENYVLPNA 191
+Y G + + G+ + EV + +P +F I A + + + NA
Sbjct: 347 MYATRGNARVQVVDNFGQSVFDGEVREGQVLMIPQNFVVIKRASDRGFEWI-AFKTNDNA 405
Query: 192 VISDSTPLTSFMVST 206
+ + S M
Sbjct: 406 ITNLLAGRVSQMRML 420
>3kgl_A Cruciferin; 11S SEED globulin, rapeseed, SEED storage protein,
storage protein, plant protein; 2.98A {Brassica napus}
Length = 466
Score = 29.5 bits (65), Expect = 0.85
Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 132 VYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGKLVMENYVLPNA 191
+YV G ++ + + NG + + +V +++P F + A +E + + E NA
Sbjct: 348 LYVTDGEAHVQVVNDNGDRVFDGQVSQGQLLSIPQGFSVVKRATSEQFRWI-EFKTNANA 406
Query: 192 VISDSTPLTSFMVST 206
I+ TS +
Sbjct: 407 QINTLAGRTSVLRGL 421
>1fxz_A Glycinin G1; proglycinin, legumin, SEED storage protein, plant
protein; 2.80A {Glycine max} SCOP: b.82.1.2 b.82.1.2
PDB: 1ud1_A 1ucx_A
Length = 476
Score = 27.5 bits (60), Expect = 4.1
Identities = 12/75 (16%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Query: 132 VYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGKLVMENYVLPNA 191
+Y G + + + NG++ + E+ + VP +F ++++N + V
Sbjct: 363 IYALNGRALIQVVNCNGERVFDGELQEGRVLIVPQNFVVAARSQSDNFEYV-SFKTNDTP 421
Query: 192 VISDSTPLTSFMVST 206
+I S + +
Sbjct: 422 MIGTLAGANSLLNAL 436
>3c3v_A Arachin ARAH3 isoform; peanut allergen, allergy, glycinin; 1.73A
{Arachis hypogaea}
Length = 510
Score = 27.6 bits (60), Expect = 4.2
Identities = 10/51 (19%), Positives = 24/51 (47%)
Query: 132 VYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENENGKLV 182
+Y G ++ + NG + + E+ + VP +F ++++N + V
Sbjct: 397 IYALRGRAHVQVVDSNGNRVYDEELQEGHVLVVPQNFAVAGKSQSDNFEYV 447
>2d5f_A Glycinin A3B4 subunit; soybean, globulin, 11S,SEED storage protein,
plant; 1.90A {Glycine max} PDB: 2d5h_A 1od5_A
Length = 493
Score = 27.2 bits (59), Expect = 5.2
Identities = 8/47 (17%), Positives = 17/47 (36%)
Query: 132 VYVCTGPLYLPMKSPNGKKYVNYEVIGDSNVAVPTHFFKIIVAENEN 178
+YV G + + + G + E+ + VP +F +
Sbjct: 392 IYVTRGKGRVRVVNAQGNAVFDGELRRGQLLVVPQNFVVAEQGGEQG 438
>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol,
DI-MYO-inositol phosphate; 1.89A {Archaeoglobus
fulgidus} PDB: 2xmh_A*
Length = 232
Score = 26.4 bits (59), Expect = 6.7
Identities = 9/45 (20%), Positives = 20/45 (44%)
Query: 57 DSIHEYFRGRNSDYKYSGYDRGHLAAAGNHKANQKHLDQTFVLSN 101
D I + + + +YK +DR + + H++ F+L+
Sbjct: 71 DDIDAFLKDKGFNYKIVRHDRPEKGNGYSLLVAKNHVEDRFILTM 115
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 26.4 bits (57), Expect = 8.2
Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 9/76 (11%)
Query: 15 DDFVLSYDRRNRTAYWVFEHLTKENTAYSEAVNRSKSEFFEDDSIHEYFRGRNSDYKYSG 74
D V + R Y + + +++ I Y RGR ++Y
Sbjct: 384 DLLVSKWHYRIEKGYPTPFI------GRNNLLEKAQ-PELMSRCI--YSRGRFGAWRYEV 434
Query: 75 YDRGHLAAAGNHKANQ 90
++ H G +
Sbjct: 435 GNQDHSFMQGVEAIDH 450
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.402
Gapped
Lambda K H
0.267 0.0470 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,357,268
Number of extensions: 189171
Number of successful extensions: 408
Number of sequences better than 10.0: 1
Number of HSP's gapped: 391
Number of HSP's successfully gapped: 21
Length of query: 222
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 132
Effective length of database: 4,188,903
Effective search space: 552935196
Effective search space used: 552935196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.6 bits)