BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10889
(267 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CHM|A Chain A, Crystal Structure Of Pci Domain From A. Thaliana Cop9
Signalosome Subunit 7 (Csn7)
Length = 169
Score = 130 bits (327), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 67/161 (41%), Positives = 101/161 (62%), Gaps = 3/161 (1%)
Query: 14 LEQFVLLAKTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHLLKLFA 73
++Q V A T K A LI + P +F F E++ +P + +L+ + + Y LL+LFA
Sbjct: 11 IDQLVKRASTCKSEALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFA 70
Query: 74 HGTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLE 133
HGT+ DY + +LP ++ Q KL+ LT++TL+ +K +PYD L+ ELD+SNVR+LE
Sbjct: 71 HGTWGDY--KCNATRLPHLSPDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELE 128
Query: 134 DLII-EAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTN 173
D +I E +Y+ I+ GKLDQ E+ FA GRD+ PG + N
Sbjct: 129 DFLINECMYAGIVRGKLDQLKRCFEVPFAAGRDLRPGQLGN 169
>pdb|4B4T|O Chain O, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 393
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 80/175 (45%), Gaps = 9/175 (5%)
Query: 29 AVELIKQVLEAPGIFMFKELIDMPLIKEL-DTSPHAGYYHLLKLFAHGTYQ--DYLKQKE 85
A +L L I+ F EL+ P+++ + + S + + LL G + D L + +
Sbjct: 214 AYDLSISALLGDKIYNFGELLHHPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQ 273
Query: 86 ELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDL-----EDLIIEAI 140
K+P + Q + Q + ++TL +E+ + ++L DIS L E L++ AI
Sbjct: 274 ISKIPILAQHESFLRQKICLMTL-IETVFVKNIRMLSFEDISKATHLPKDNVEHLVMRAI 332
Query: 141 YSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQAWSDSCANVLKAIETQ 195
++ G +DQ N + + + R I+ +T M W+D + K +E +
Sbjct: 333 SLGLLKGSIDQVNELVTISWVQPRIISGDQITKMKDRLVEWNDQVEKLGKKMEAR 387
>pdb|2E2N|A Chain A, Crystal Structure Of Sulfolobus Tokodaii Hexokinase In The
Apo Form
pdb|2E2N|B Chain B, Crystal Structure Of Sulfolobus Tokodaii Hexokinase In The
Apo Form
pdb|2E2O|A Chain A, Crystal Structure Of Sulfolobus Tokodaii Hexokinase In
Complex With Glucose
pdb|2E2P|A Chain A, Crystal Structure Of Sulfolobus Tokodaii Hexokinase In
Complex With Adp
pdb|2E2P|B Chain B, Crystal Structure Of Sulfolobus Tokodaii Hexokinase In
Complex With Adp
pdb|2E2Q|A Chain A, Crystal Structure Of Sulfolobus Tokodaii Hexokinase In
Complex With Xylose, Mg2+, And Adp
pdb|2E2Q|B Chain B, Crystal Structure Of Sulfolobus Tokodaii Hexokinase In
Complex With Xylose, Mg2+, And Adp
Length = 299
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Query: 95 LQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLII 137
+ +K L+ + + LE+K I Y+K+LK + NV+DL++L++
Sbjct: 147 VGRKALRKVLKMMDGLENKTILYNKVLKTI---NVKDLDELVM 186
>pdb|4AWJ|C Chain C, Pvhl:elob:eloc Complex, In Complex With Capped
Hydroxyproline
pdb|4AWJ|F Chain F, Pvhl:elob:eloc Complex, In Complex With Capped
Hydroxyproline
pdb|4AWJ|I Chain I, Pvhl:elob:eloc Complex, In Complex With Capped
Hydroxyproline
pdb|4AWJ|L Chain L, Pvhl:elob:eloc Complex, In Complex With Capped
Hydroxyproline
Length = 163
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 62 HAGYYHLLKLFAHGTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLL 121
H+ HL GT+ L + EL +P + + N+T+ +L+ +C+ +++
Sbjct: 60 HSYRGHLWLFRDAGTHDGLLVNQTELFVPSLNVDGQPIFANITLPVYTLKERCL---QVV 116
Query: 122 KEL-DISNVRDLEDLIIEAIYSDI 144
+ L N R L+ I+ ++Y D+
Sbjct: 117 RSLVKPENYRRLD--IVRSLYEDL 138
>pdb|1LQB|C Chain C, Crystal Structure Of A Hydroxylated Hif-1 Alpha Peptide
Bound To The PvhlELONGIN-CELONGIN-B Complex
pdb|3ZTD|C Chain C, Pvhl54-213-Elob-Eloc Complex _ Methyl
4-(((2s,4r)-4-Hydroxy-
1-(2-(3-Methylisoxazol-5-Yl)acetyl)pyrrolidine-2-
Carboxamido)methyl)benzoate
pdb|3ZTD|F Chain F, Pvhl54-213-Elob-Eloc Complex _ Methyl
4-(((2s,4r)-4-Hydroxy-
1-(2-(3-Methylisoxazol-5-Yl)acetyl)pyrrolidine-2-
Carboxamido)methyl)benzoate
pdb|3ZTD|I Chain I, Pvhl54-213-Elob-Eloc Complex _ Methyl
4-(((2s,4r)-4-Hydroxy-
1-(2-(3-Methylisoxazol-5-Yl)acetyl)pyrrolidine-2-
Carboxamido)methyl)benzoate
pdb|3ZTD|L Chain L, Pvhl54-213-Elob-Eloc Complex _ Methyl
4-(((2s,4r)-4-Hydroxy-
1-(2-(3-Methylisoxazol-5-Yl)acetyl)pyrrolidine-2-
Carboxamido)methyl)benzoate
pdb|4B95|C Chain C, Pvhl-Elob-Elob-Elocc
Complex_(2s,4r)-1-(2-Chlorophenyl)carbonyl-N-[
(4-Chlorophenyl)methyl]-4-Oxidanyl-Pyrrolidine-2-
Carboxamide Bound
pdb|4B95|F Chain F, Pvhl-Elob-Elob-Elocc
Complex_(2s,4r)-1-(2-Chlorophenyl)carbonyl-N-[
(4-Chlorophenyl)methyl]-4-Oxidanyl-Pyrrolidine-2-
Carboxamide Bound
pdb|4B95|I Chain I, Pvhl-Elob-Elob-Elocc
Complex_(2s,4r)-1-(2-Chlorophenyl)carbonyl-N-[
(4-Chlorophenyl)methyl]-4-Oxidanyl-Pyrrolidine-2-
Carboxamide Bound
pdb|4B95|L Chain L, Pvhl-Elob-Elob-Elocc
Complex_(2s,4r)-1-(2-Chlorophenyl)carbonyl-N-[
(4-Chlorophenyl)methyl]-4-Oxidanyl-Pyrrolidine-2-
Carboxamide Bound
Length = 162
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 62 HAGYYHLLKLFAHGTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLL 121
H+ HL GT+ L + EL +P + + N+T+ +L+ +C+ +++
Sbjct: 59 HSYRGHLWLFRDAGTHDGLLVNQTELFVPSLNVDGQPIFANITLPVYTLKERCL---QVV 115
Query: 122 KEL-DISNVRDLEDLIIEAIYSDI 144
+ L N R L+ I+ ++Y D+
Sbjct: 116 RSLVKPENYRRLD--IVRSLYEDL 137
>pdb|4B9K|C Chain C, Pvhl-Elob-Eloc
Complex_(2s,4r)-1-(3-Amino-2-Methylbenzoyl)-4-
Hydroxy-N-(4-(4-Methylthiazol-5-Yl)benzyl)
Pyrrolidine-2-Carboxamide Bound
pdb|4B9K|F Chain F, Pvhl-Elob-Eloc
Complex_(2s,4r)-1-(3-Amino-2-Methylbenzoyl)-4-
Hydroxy-N-(4-(4-Methylthiazol-5-Yl)benzyl)
Pyrrolidine-2-Carboxamide Bound
pdb|4B9K|I Chain I, Pvhl-Elob-Eloc
Complex_(2s,4r)-1-(3-Amino-2-Methylbenzoyl)-4-
Hydroxy-N-(4-(4-Methylthiazol-5-Yl)benzyl)
Pyrrolidine-2-Carboxamide Bound
pdb|4B9K|L Chain L, Pvhl-Elob-Eloc
Complex_(2s,4r)-1-(3-Amino-2-Methylbenzoyl)-4-
Hydroxy-N-(4-(4-Methylthiazol-5-Yl)benzyl)
Pyrrolidine-2-Carboxamide Bound
Length = 171
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 62 HAGYYHLLKLFAHGTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLL 121
H+ HL GT+ L + EL +P + + N+T+ +L+ +C+ +++
Sbjct: 68 HSYRGHLWLFRDAGTHDGLLVNQTELFVPSLNVDGQPIFANITLPVYTLKERCL---QVV 124
Query: 122 KEL-DISNVRDLEDLIIEAIYSDI 144
+ L N R L+ I+ ++Y D+
Sbjct: 125 RSLVKPENYRRLD--IVRSLYEDL 146
>pdb|3ZRC|C Chain C, Pvhl54-213-Elob-Eloc Complex
(4r)-4-Hydroxy-1-[(3-Methylisoxazol-5-
Yl)acetyl]-N-[4-(1,3-Oxazol-5-Yl)benzyl]-L-Prolinamide
Bound
pdb|3ZRC|F Chain F, Pvhl54-213-Elob-Eloc Complex
(4r)-4-Hydroxy-1-[(3-Methylisoxazol-5-
Yl)acetyl]-N-[4-(1,3-Oxazol-5-Yl)benzyl]-L-Prolinamide
Bound
pdb|3ZRC|I Chain I, Pvhl54-213-Elob-Eloc Complex
(4r)-4-Hydroxy-1-[(3-Methylisoxazol-5-
Yl)acetyl]-N-[4-(1,3-Oxazol-5-Yl)benzyl]-L-Prolinamide
Bound
pdb|3ZRC|L Chain L, Pvhl54-213-Elob-Eloc Complex
(4r)-4-Hydroxy-1-[(3-Methylisoxazol-5-
Yl)acetyl]-N-[4-(1,3-Oxazol-5-Yl)benzyl]-L-Prolinamide
Bound
pdb|3ZRF|C Chain C, Pvhl54-213-Elob-Eloc Complex_apo
pdb|3ZRF|F Chain F, Pvhl54-213-Elob-Eloc Complex_apo
pdb|3ZRF|I Chain I, Pvhl54-213-Elob-Eloc Complex_apo
pdb|3ZRF|L Chain L, Pvhl54-213-Elob-Eloc Complex_apo
pdb|3ZTC|C Chain C, Pvhl54-213-Elob-Eloc Complex _
(2s,4r)-N-((1,1'-Biphenyl)-4-
Ylmethyl)-4-Hydroxy-1-(2-(3-Methylisoxazol-5-Yl)acetyl)
Pyrrolidine-2-Carboxamide
pdb|3ZTC|F Chain F, Pvhl54-213-Elob-Eloc Complex _
(2s,4r)-N-((1,1'-Biphenyl)-4-
Ylmethyl)-4-Hydroxy-1-(2-(3-Methylisoxazol-5-Yl)acetyl)
Pyrrolidine-2-Carboxamide
pdb|3ZTC|I Chain I, Pvhl54-213-Elob-Eloc Complex _
(2s,4r)-N-((1,1'-Biphenyl)-4-
Ylmethyl)-4-Hydroxy-1-(2-(3-Methylisoxazol-5-Yl)acetyl)
Pyrrolidine-2-Carboxamide
pdb|3ZTC|L Chain L, Pvhl54-213-Elob-Eloc Complex _
(2s,4r)-N-((1,1'-Biphenyl)-4-
Ylmethyl)-4-Hydroxy-1-(2-(3-Methylisoxazol-5-Yl)acetyl)
Pyrrolidine-2-Carboxamide
pdb|3ZUN|C Chain C, Pvhl54-213-Elob-Eloc Complex_(2s,4r)-4-Hydroxy-1-(2-(3-
Methylisoxazol-5-Yl)acetyl)-N-(4-
Nitrobenzyl)pyrrolidine-2- Carboxamide Bound
pdb|3ZUN|F Chain F, Pvhl54-213-Elob-Eloc Complex_(2s,4r)-4-Hydroxy-1-(2-(3-
Methylisoxazol-5-Yl)acetyl)-N-(4-
Nitrobenzyl)pyrrolidine-2- Carboxamide Bound
pdb|3ZUN|I Chain I, Pvhl54-213-Elob-Eloc Complex_(2s,4r)-4-Hydroxy-1-(2-(3-
Methylisoxazol-5-Yl)acetyl)-N-(4-
Nitrobenzyl)pyrrolidine-2- Carboxamide Bound
pdb|3ZUN|L Chain L, Pvhl54-213-Elob-Eloc Complex_(2s,4r)-4-Hydroxy-1-(2-(3-
Methylisoxazol-5-Yl)acetyl)-N-(4-
Nitrobenzyl)pyrrolidine-2- Carboxamide Bound
pdb|4AJY|V Chain V, Von Hippel-Lindau Protein-Elonginb-Elonginc Complex, Bound
To Hif1- Alpha Peptide
Length = 163
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 62 HAGYYHLLKLFAHGTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLL 121
H+ HL GT+ L + EL +P + + N+T+ +L+ +C+ +++
Sbjct: 60 HSYRGHLWLFRDAGTHDGLLVNQTELFVPSLNVDGQPIFANITLPVYTLKERCL---QVV 116
Query: 122 KEL-DISNVRDLEDLIIEAIYSDI 144
+ L N R L+ I+ ++Y D+
Sbjct: 117 RSLVKPENYRRLD--IVRSLYEDL 138
>pdb|1VCB|C Chain C, The Vhl-Elonginc-Elonginb Structure
pdb|1VCB|F Chain F, The Vhl-Elonginc-Elonginb Structure
pdb|1VCB|I Chain I, The Vhl-Elonginc-Elonginb Structure
pdb|1VCB|L Chain L, The Vhl-Elonginc-Elonginb Structure
pdb|1LM8|V Chain V, Structure Of A Hif-1a-Pvhl-Elonginb-Elonginc Complex
Length = 160
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 62 HAGYYHLLKLFAHGTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLL 121
H+ HL GT+ L + EL +P + + N+T+ +L+ +C+ +++
Sbjct: 57 HSYRGHLWLFRDAGTHDGLLVNQTELFVPSLNVDGQPIFANITLPVYTLKERCL---QVV 113
Query: 122 KEL-DISNVRDLEDLIIEAIYSDI 144
+ L N R L+ I+ ++Y D+
Sbjct: 114 RSLVKPENYRRLD--IVRSLYEDL 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,610,433
Number of Sequences: 62578
Number of extensions: 305717
Number of successful extensions: 698
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 692
Number of HSP's gapped (non-prelim): 21
length of query: 267
length of database: 14,973,337
effective HSP length: 97
effective length of query: 170
effective length of database: 8,903,271
effective search space: 1513556070
effective search space used: 1513556070
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)