Query psy10889
Match_columns 267
No_of_seqs 201 out of 584
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 21:02:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10889.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10889hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3chm_A COP9 signalosome comple 100.0 5.4E-49 1.9E-53 335.2 13.7 165 7-173 4-169 (169)
2 4b4t_O 26S proteasome regulato 100.0 5.7E-35 1.9E-39 277.4 10.0 173 24-197 209-389 (393)
3 3txn_A 26S proteasome regulato 99.4 4.2E-12 1.4E-16 120.6 12.7 161 27-191 221-389 (394)
4 4b4t_P 26S proteasome regulato 98.9 2.7E-09 9.3E-14 102.3 8.2 164 27-202 259-436 (445)
5 3t5x_A PCI domain-containing p 98.7 2.4E-08 8.1E-13 86.6 6.3 99 63-161 81-193 (203)
6 4b4t_R RPN7, 26S proteasome re 98.7 1.2E-07 4.1E-12 90.2 11.6 136 29-165 250-397 (429)
7 4b4t_Q 26S proteasome regulato 98.5 4.6E-07 1.6E-11 82.4 9.7 127 62-199 296-430 (434)
8 1ufm_A COP9 complex subunit 4; 98.2 3.4E-06 1.2E-10 63.3 7.2 56 107-163 23-78 (84)
9 4b4t_S RPN3, 26S proteasome re 98.1 3.6E-06 1.2E-10 82.3 7.5 92 63-158 343-445 (523)
10 3t5v_B Nuclear mRNA export pro 97.8 2.4E-05 8.2E-10 75.4 7.0 97 65-161 299-429 (455)
11 4b0z_A RPN12, 26S proteasome r 93.9 0.1 3.4E-06 45.4 6.4 74 63-138 136-214 (229)
12 1wi9_A Protein C20ORF116 homol 92.3 0.17 5.7E-06 36.6 4.4 54 105-159 12-65 (72)
13 3df8_A Possible HXLR family tr 88.6 2.2 7.6E-05 32.3 8.2 81 97-186 25-107 (111)
14 1qbj_A Protein (double-strande 87.4 1.4 4.9E-05 32.0 6.1 59 99-159 12-70 (81)
15 2hzt_A Putative HTH-type trans 86.5 5.5 0.00019 29.6 9.2 70 112-185 25-95 (107)
16 1qgp_A Protein (double strande 83.7 1.7 5.9E-05 31.1 4.9 48 101-149 18-65 (77)
17 1i1g_A Transcriptional regulat 82.3 1 3.5E-05 35.0 3.5 71 111-182 15-88 (141)
18 3g3z_A NMB1585, transcriptiona 80.6 7.9 0.00027 29.5 8.2 40 114-154 45-84 (145)
19 3r0a_A Putative transcriptiona 80.4 3.1 0.00011 32.0 5.6 80 109-193 36-119 (123)
20 2oqg_A Possible transcriptiona 78.7 14 0.00047 27.1 8.7 37 113-150 33-69 (114)
21 2d1h_A ST1889, 109AA long hypo 78.5 11 0.00039 26.8 8.1 69 112-186 34-105 (109)
22 1sfx_A Conserved hypothetical 77.6 16 0.00056 25.9 8.8 38 113-151 33-70 (109)
23 4a5n_A Uncharacterized HTH-typ 77.6 18 0.00063 28.3 9.5 79 99-185 26-107 (131)
24 1ub9_A Hypothetical protein PH 77.0 10 0.00035 26.9 7.3 38 113-151 29-66 (100)
25 1lj9_A Transcriptional regulat 76.6 11 0.00037 28.5 7.8 42 113-155 42-83 (144)
26 3cuo_A Uncharacterized HTH-typ 76.5 14 0.00047 26.1 8.0 41 110-151 34-74 (99)
27 2kko_A Possible transcriptiona 76.4 8.7 0.0003 28.6 7.0 63 113-184 37-99 (108)
28 1z7u_A Hypothetical protein EF 76.3 18 0.00062 26.9 8.9 69 113-185 34-103 (112)
29 2cg4_A Regulatory protein ASNC 75.7 3.4 0.00012 32.6 4.7 43 110-153 18-63 (152)
30 4b4t_T 26S proteasome regulato 75.7 7.3 0.00025 34.5 7.3 91 48-138 126-223 (274)
31 2gxg_A 146AA long hypothetical 75.5 18 0.00061 27.2 8.8 43 112-155 48-90 (146)
32 2ia0_A Putative HTH-type trans 75.3 2.4 8.4E-05 34.6 3.8 41 111-152 28-71 (171)
33 3t8r_A Staphylococcus aureus C 75.1 4.6 0.00016 32.0 5.3 57 100-158 14-70 (143)
34 2cfx_A HTH-type transcriptiona 74.9 2.7 9.4E-05 32.9 3.9 42 110-152 15-59 (144)
35 3f6o_A Probable transcriptiona 74.6 7.9 0.00027 29.2 6.4 38 113-151 30-67 (118)
36 3bpv_A Transcriptional regulat 74.4 12 0.0004 28.0 7.4 46 112-158 41-86 (138)
37 3lwf_A LIN1550 protein, putati 74.4 6 0.0002 32.2 6.0 65 92-158 22-86 (159)
38 2fsw_A PG_0823 protein; alpha- 74.4 13 0.00044 27.4 7.5 66 112-183 36-104 (107)
39 2y75_A HTH-type transcriptiona 73.9 5.9 0.0002 30.3 5.6 48 100-148 12-59 (129)
40 2pn6_A ST1022, 150AA long hypo 73.6 7 0.00024 30.5 6.1 47 105-152 8-57 (150)
41 2p5v_A Transcriptional regulat 73.4 3.5 0.00012 32.9 4.3 41 111-152 21-64 (162)
42 2dbb_A Putative HTH-type trans 73.3 3 0.0001 32.8 3.8 42 110-152 19-63 (151)
43 1oyi_A Double-stranded RNA-bin 73.3 5.1 0.00017 29.4 4.7 45 98-147 18-62 (82)
44 1yyv_A Putative transcriptiona 73.1 14 0.00048 28.7 7.7 80 99-184 35-115 (131)
45 4aik_A Transcriptional regulat 73.0 14 0.00047 29.0 7.8 66 91-162 28-93 (151)
46 2e1c_A Putative HTH-type trans 72.4 2.4 8.4E-05 34.6 3.1 41 111-152 38-81 (171)
47 3i4p_A Transcriptional regulat 70.5 8.1 0.00028 30.9 5.9 48 105-153 8-58 (162)
48 2fbh_A Transcriptional regulat 69.9 19 0.00064 27.0 7.7 44 111-155 49-92 (146)
49 2cyy_A Putative HTH-type trans 69.3 2.8 9.6E-05 33.1 2.8 37 110-147 17-53 (151)
50 2f2e_A PA1607; transcription f 69.1 23 0.00079 27.8 8.3 41 113-154 36-76 (146)
51 1xn7_A Hypothetical protein YH 68.6 5.3 0.00018 28.8 3.9 43 103-146 5-47 (78)
52 2heo_A Z-DNA binding protein 1 68.2 7.9 0.00027 26.6 4.6 46 99-147 12-57 (67)
53 3deu_A Transcriptional regulat 67.5 15 0.0005 29.1 6.8 46 112-158 66-111 (166)
54 3s2w_A Transcriptional regulat 67.4 13 0.00046 28.8 6.5 46 113-159 63-108 (159)
55 3kp7_A Transcriptional regulat 67.0 11 0.00037 28.9 5.8 44 111-155 48-93 (151)
56 3k0l_A Repressor protein; heli 66.6 16 0.00056 28.4 6.9 47 113-160 59-105 (162)
57 1ylf_A RRF2 family protein; st 66.0 8.8 0.0003 30.4 5.1 48 100-149 17-64 (149)
58 4hbl_A Transcriptional regulat 65.8 13 0.00046 28.5 6.1 43 112-155 53-95 (149)
59 3bja_A Transcriptional regulat 65.2 14 0.00047 27.6 6.0 44 112-156 45-88 (139)
60 2k02_A Ferrous iron transport 64.9 5.9 0.0002 29.3 3.6 45 103-148 5-49 (87)
61 2v79_A DNA replication protein 62.4 40 0.0014 26.4 8.3 60 112-182 49-110 (135)
62 1ku9_A Hypothetical protein MJ 62.3 46 0.0016 24.8 11.5 46 113-159 40-86 (152)
63 2eth_A Transcriptional regulat 62.1 25 0.00085 27.0 7.1 42 113-155 57-98 (154)
64 3jth_A Transcription activator 61.8 24 0.00081 25.2 6.5 39 113-152 35-73 (98)
65 1xd7_A YWNA; structural genomi 61.4 13 0.00044 29.2 5.3 34 116-150 25-58 (145)
66 1uly_A Hypothetical protein PH 61.4 68 0.0023 26.4 11.9 35 113-148 32-66 (192)
67 2htj_A P fimbrial regulatory p 61.3 17 0.00058 25.3 5.4 36 112-148 12-47 (81)
68 3k69_A Putative transcription 60.9 14 0.00048 29.9 5.5 47 100-148 15-61 (162)
69 3eco_A MEPR; mutlidrug efflux 60.7 26 0.00091 26.1 6.9 45 113-158 46-90 (139)
70 2a61_A Transcriptional regulat 60.0 41 0.0014 25.1 7.9 45 113-158 46-90 (145)
71 2rdp_A Putative transcriptiona 58.9 21 0.00071 27.1 6.0 43 113-156 55-97 (150)
72 3nrv_A Putative transcriptiona 58.5 13 0.00045 28.2 4.8 41 113-154 53-93 (148)
73 2fbi_A Probable transcriptiona 58.4 42 0.0014 24.8 7.7 45 113-158 49-93 (142)
74 1s3j_A YUSO protein; structura 57.6 25 0.00084 26.8 6.3 42 113-155 50-91 (155)
75 2w25_A Probable transcriptiona 56.6 13 0.00043 29.1 4.4 37 111-148 18-54 (150)
76 2vn2_A DNAD, chromosome replic 56.5 30 0.001 26.6 6.5 59 91-152 29-88 (128)
77 3cjn_A Transcriptional regulat 55.3 32 0.0011 26.5 6.6 43 112-155 64-106 (162)
78 2pg4_A Uncharacterized protein 54.4 19 0.00064 25.7 4.8 36 110-146 26-62 (95)
79 2jt1_A PEFI protein; solution 54.1 10 0.00036 27.1 3.2 35 112-147 22-56 (77)
80 3oop_A LIN2960 protein; protei 54.0 18 0.00061 27.3 4.9 42 113-155 50-91 (143)
81 3bj6_A Transcriptional regulat 53.6 35 0.0012 25.8 6.6 41 113-154 53-93 (152)
82 3tgn_A ADC operon repressor AD 52.7 36 0.0012 25.5 6.4 43 115-158 52-94 (146)
83 2nnn_A Probable transcriptiona 52.3 34 0.0012 25.3 6.2 44 113-157 51-94 (140)
84 3u2r_A Regulatory protein MARR 51.8 72 0.0025 24.7 8.3 49 112-161 60-108 (168)
85 3cdh_A Transcriptional regulat 51.0 59 0.002 24.6 7.6 42 112-154 55-96 (155)
86 3boq_A Transcriptional regulat 50.9 18 0.00061 27.8 4.4 44 111-155 59-102 (160)
87 2hr3_A Probable transcriptiona 50.8 51 0.0017 24.6 7.1 43 112-155 48-90 (147)
88 3pqk_A Biofilm growth-associat 50.4 46 0.0016 23.9 6.4 39 113-152 35-73 (102)
89 3gpv_A Transcriptional regulat 50.4 56 0.0019 25.8 7.4 99 114-226 16-134 (148)
90 1u2w_A CADC repressor, cadmium 49.5 23 0.00079 26.7 4.8 38 112-150 54-91 (122)
91 1jgs_A Multiple antibiotic res 49.4 37 0.0012 25.2 5.9 45 113-158 47-91 (138)
92 3bro_A Transcriptional regulat 48.9 67 0.0023 23.7 7.4 42 114-156 50-91 (141)
93 2nyx_A Probable transcriptiona 47.7 48 0.0016 25.8 6.6 45 113-158 58-102 (168)
94 1j5y_A Transcriptional regulat 47.2 32 0.0011 28.0 5.6 50 97-147 18-69 (187)
95 1z05_A Transcriptional regulat 47.2 14 0.00049 34.0 3.9 72 75-147 14-85 (429)
96 3f6v_A Possible transcriptiona 45.7 48 0.0016 26.2 6.3 40 113-153 70-109 (151)
97 1r1u_A CZRA, repressor protein 45.3 32 0.0011 25.1 4.9 38 113-151 38-75 (106)
98 1tbx_A ORF F-93, hypothetical 45.0 76 0.0026 22.3 6.9 41 112-153 20-64 (99)
99 2fa5_A Transcriptional regulat 44.8 27 0.00094 26.8 4.7 42 112-154 61-102 (162)
100 2x4h_A Hypothetical protein SS 44.6 35 0.0012 25.7 5.2 54 92-148 11-64 (139)
101 3fm5_A Transcriptional regulat 43.8 35 0.0012 25.9 5.1 48 110-158 50-97 (150)
102 2p7v_B Sigma-70, RNA polymeras 43.2 24 0.00083 23.6 3.6 28 113-141 24-51 (68)
103 3e6m_A MARR family transcripti 42.7 21 0.00071 27.7 3.6 42 113-155 66-107 (161)
104 3t5v_A Nuclear mRNA export pro 42.2 38 0.0013 30.6 5.7 62 75-136 177-246 (316)
105 3hsr_A HTH-type transcriptiona 41.4 54 0.0018 24.6 5.8 46 111-157 47-92 (140)
106 3bdd_A Regulatory protein MARR 39.6 48 0.0016 24.5 5.2 42 113-155 44-85 (142)
107 1y0u_A Arsenical resistance op 38.7 44 0.0015 23.7 4.7 36 113-149 42-77 (96)
108 1ku3_A Sigma factor SIGA; heli 38.7 36 0.0012 23.0 4.0 27 113-140 29-55 (73)
109 2k6x_A Sigma-A, RNA polymerase 38.5 21 0.00071 24.9 2.7 40 105-144 14-57 (72)
110 2pex_A Transcriptional regulat 38.0 69 0.0024 24.2 6.0 42 112-154 59-100 (153)
111 3ech_A MEXR, multidrug resista 38.0 33 0.0011 25.8 4.1 43 113-156 50-92 (142)
112 1tc3_C Protein (TC3 transposas 37.8 26 0.00088 20.8 2.8 22 115-137 22-43 (51)
113 2qvo_A Uncharacterized protein 37.5 59 0.002 23.1 5.2 47 112-159 28-74 (95)
114 3gp4_A Transcriptional regulat 37.1 1E+02 0.0035 24.1 6.9 28 115-147 3-30 (142)
115 3f3x_A Transcriptional regulat 37.0 81 0.0028 23.5 6.2 43 116-159 52-94 (144)
116 3hug_A RNA polymerase sigma fa 36.8 32 0.0011 24.5 3.6 27 113-140 52-78 (92)
117 3nqo_A MARR-family transcripti 35.4 93 0.0032 24.8 6.7 49 112-161 55-103 (189)
118 1tty_A Sigma-A, RNA polymerase 35.4 42 0.0014 23.7 4.0 29 112-141 36-64 (87)
119 2o8x_A Probable RNA polymerase 34.9 38 0.0013 22.1 3.6 26 114-140 31-56 (70)
120 1z91_A Organic hydroperoxide r 34.7 37 0.0013 25.5 3.8 41 113-154 53-93 (147)
121 3t72_q RNA polymerase sigma fa 33.5 42 0.0014 24.9 3.8 29 112-141 37-65 (99)
122 2p5k_A Arginine repressor; DNA 33.0 64 0.0022 20.8 4.4 41 101-145 6-51 (64)
123 1on2_A Transcriptional regulat 33.0 34 0.0012 25.9 3.4 41 107-148 15-55 (142)
124 2frh_A SARA, staphylococcal ac 32.7 45 0.0015 24.9 4.0 45 113-158 52-96 (127)
125 2qww_A Transcriptional regulat 32.6 35 0.0012 25.9 3.4 42 113-155 54-97 (154)
126 1q1h_A TFE, transcription fact 32.2 39 0.0013 24.6 3.5 37 111-148 30-66 (110)
127 1r1t_A Transcriptional repress 31.6 1.3E+02 0.0044 22.6 6.5 37 113-150 58-94 (122)
128 2cwo_A P21, RNA silencing supp 30.8 9.8 0.00034 30.7 -0.2 31 1-31 117-147 (197)
129 3bqo_A Telomeric repeat-bindin 30.7 58 0.002 27.9 4.6 51 65-115 26-81 (211)
130 2bv6_A MGRA, HTH-type transcri 30.5 78 0.0027 23.4 5.1 42 113-155 50-91 (142)
131 1ldj_A Cullin homolog 1, CUL-1 30.4 2.1E+02 0.0071 28.6 9.5 36 110-146 599-634 (760)
132 2p4w_A Transcriptional regulat 30.2 2.3E+02 0.0079 23.3 14.9 38 113-151 27-64 (202)
133 2f23_A Anti-cleavage anti-GREA 29.6 87 0.003 25.0 5.4 62 166-227 7-72 (156)
134 1rz4_A Eukaryotic translation 29.0 2.6E+02 0.009 23.6 9.8 76 61-138 98-176 (226)
135 2jsc_A Transcriptional regulat 28.9 66 0.0023 23.9 4.4 38 113-151 33-70 (118)
136 2fbk_A Transcriptional regulat 28.5 41 0.0014 26.6 3.3 40 114-154 86-125 (181)
137 2lfw_A PHYR sigma-like domain; 28.2 45 0.0015 25.9 3.4 27 113-140 108-134 (157)
138 2qlz_A Transcription factor PF 28.0 61 0.0021 27.8 4.4 44 112-159 176-219 (232)
139 2jpc_A SSRB; DNA binding prote 27.8 52 0.0018 21.0 3.2 25 114-139 13-37 (61)
140 2wte_A CSA3; antiviral protein 27.5 82 0.0028 27.0 5.2 45 112-159 164-208 (244)
141 2rg8_A Programmed cell death p 27.4 1.2E+02 0.004 24.5 5.9 68 68-138 17-98 (165)
142 3ulq_B Transcriptional regulat 26.9 72 0.0025 22.9 4.1 26 114-140 44-69 (90)
143 1z6r_A MLC protein; transcript 26.6 65 0.0022 29.1 4.7 44 103-147 19-62 (406)
144 3c57_A Two component transcrip 26.6 62 0.0021 23.2 3.7 27 113-140 41-67 (95)
145 3mzy_A RNA polymerase sigma-H 26.4 56 0.0019 24.6 3.6 27 113-140 123-149 (164)
146 3kor_A Possible Trp repressor; 26.2 59 0.002 25.4 3.6 27 115-143 76-102 (119)
147 2fu4_A Ferric uptake regulatio 26.0 99 0.0034 21.1 4.6 35 113-148 32-71 (83)
148 3hrs_A Metalloregulator SCAR; 25.2 1E+02 0.0036 25.5 5.4 47 103-150 9-55 (214)
149 1je8_A Nitrate/nitrite respons 24.8 69 0.0024 22.3 3.6 26 114-140 36-61 (82)
150 1t3j_A Mitofusin 1; coiled coi 24.8 1.6E+02 0.0054 22.0 5.6 33 172-204 32-64 (96)
151 1eij_A Hypothetical protein MT 24.8 32 0.0011 25.0 1.7 22 130-151 37-58 (80)
152 2x48_A CAG38821; archeal virus 23.8 58 0.002 20.4 2.8 22 114-136 31-52 (55)
153 1or7_A Sigma-24, RNA polymeras 23.8 64 0.0022 25.3 3.6 27 113-140 155-181 (194)
154 1x3u_A Transcriptional regulat 23.8 77 0.0026 21.2 3.6 27 113-140 30-56 (79)
155 2w48_A Sorbitol operon regulat 23.7 1E+02 0.0036 26.9 5.3 51 100-151 7-57 (315)
156 1fse_A GERE; helix-turn-helix 22.7 1.2E+02 0.0042 19.7 4.4 25 114-139 26-50 (74)
157 3b73_A PHIH1 repressor-like pr 22.5 58 0.002 24.7 2.9 44 112-159 25-70 (111)
158 2fh0_A Hypothetical 16.0 kDa p 22.4 33 0.0011 25.0 1.4 22 130-151 35-56 (81)
159 1txp_A HnRNP C, heterogeneous 22.2 1.2E+02 0.0039 17.6 3.4 23 172-194 2-24 (28)
160 2obp_A Putative DNA-binding pr 22.1 2.4E+02 0.0082 20.7 8.2 64 91-155 13-76 (96)
161 1bia_A BIRA bifunctional prote 21.4 1.1E+02 0.0036 27.2 4.9 42 104-146 9-50 (321)
162 2lkp_A Transcriptional regulat 21.2 1.2E+02 0.0042 22.0 4.5 37 113-150 44-80 (119)
163 3swf_A CGMP-gated cation chann 20.8 1.2E+02 0.0043 21.6 4.1 42 183-227 10-51 (74)
164 4b8x_A SCO5413, possible MARR- 20.8 1.9E+02 0.0066 21.8 5.8 66 91-161 32-97 (147)
165 1wcn_A Transcription elongatio 20.8 48 0.0016 23.1 1.9 51 88-140 11-61 (70)
166 1mkm_A ICLR transcriptional re 20.5 1E+02 0.0035 26.0 4.4 37 111-148 20-56 (249)
167 1p4w_A RCSB; solution structur 20.4 90 0.0031 22.8 3.6 25 114-139 49-73 (99)
168 2rnj_A Response regulator prot 20.2 74 0.0025 22.4 3.0 26 114-140 44-69 (91)
169 2qc0_A Uncharacterized protein 20.1 3.6E+02 0.012 24.3 8.3 94 63-158 239-353 (373)
No 1
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=100.00 E-value=5.4e-49 Score=335.21 Aligned_cols=165 Identities=41% Similarity=0.700 Sum_probs=156.3
Q ss_pred ccCCcchHHHHHhhcccchHHHHHHHHHHHHhCCCeeechhhhcChhhhhhcCCCchhHHHHHHHHhcCCHhHHHhhhhh
Q psy10889 7 SGVGTNPLEQFVLLAKTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHLLKLFAHGTYQDYLKQKEE 86 (267)
Q Consensus 7 ~~~~~~~le~fl~lak~~k~~aa~~lI~~aL~~p~vf~F~eLL~~p~vq~L~~s~~~~~~~LL~lFa~Gt~~dy~~~~~~ 86 (267)
+.++.+.||+|+++|+++++.+|+++|.+||.+|++|+|||||.+|+|++|++++|+|+++||++|++|||.+|.++.+
T Consensus 4 ~~~~~~~l~~f~~la~~~~~~~a~~li~~Al~~p~vf~F~eLL~~p~v~~L~~~~~~~~~~LL~iF~~G~~~~y~~~~~- 82 (169)
T 3chm_A 4 EQKQAEIIDQLVKRASTCKSEALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFAHGTWGDYKCNAT- 82 (169)
T ss_dssp CCCHHHHHHHHHHHHTTSCGGGHHHHHHHHHHCTTCCCCHHHHTCHHHHTTTTSTTHHHHHHHHHHHHCCHHHHHHHGG-
T ss_pred hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhcCCCeeehHHHhCChHHHHhcCCChhHHHHHHHHHhcCCHHHHHHhHH-
Confidence 5677889999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccCchhHHHHHHHHHhHHhhhcccCCcccCHHHHHHHhCCCChhhHHHHHH-HHHhcCccEEEecCCCCeEEEEeecCCC
Q psy10889 87 LKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLII-EAIYSDIIHGKLDQRNSSLELDFAIGRD 165 (267)
Q Consensus 87 ~~~p~L~~~~~~KLr~LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI-~aI~~gLI~GkIDQ~~~~v~V~~~~~Rd 165 (267)
.+|+|++.+.+|||+|||++||..+++|||++|+++|+|+|+++||+||| +||+.|||+|||||++++|+|+|++|||
T Consensus 83 -~~p~L~~~~~~KlrlLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkiDQ~~~~v~V~~~~~R~ 161 (169)
T 3chm_A 83 -RLPHLSPDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFAAGRD 161 (169)
T ss_dssp -GSCCCCHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHTSEEEEEETTTTEEEEEEECCTT
T ss_pred -hCcchHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCCeEEEEcCcCCEEEEEeecCCc
Confidence 89999999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred CCCCcHHH
Q psy10889 166 INPGDVTN 173 (267)
Q Consensus 166 ~~~~q~~~ 173 (267)
|+++||..
T Consensus 162 l~~~qi~~ 169 (169)
T 3chm_A 162 LRPGQLGN 169 (169)
T ss_dssp CCC-----
T ss_pred cCHHhccC
Confidence 99999963
No 2
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-35 Score=277.37 Aligned_cols=173 Identities=19% Similarity=0.376 Sum_probs=120.5
Q ss_pred chHHHHHHHHHHHHhCCCeeechhhhcChhhhhhcCC-CchhHHHHHHHHhcCCHhHHHhhhhh-c-cCchhHHH---HH
Q psy10889 24 TKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTS-PHAGYYHLLKLFAHGTYQDYLKQKEE-L-KLPEMTQL---QK 97 (267)
Q Consensus 24 ~k~~aa~~lI~~aL~~p~vf~F~eLL~~p~vq~L~~s-~~~~~~~LL~lFa~Gt~~dy~~~~~~-~-~~p~L~~~---~~ 97 (267)
.+...++.++..||.+|++|+||+||.+|.+++|.++ ++.|+++||.+|++||+.+|.++... . ..|.|.+. ..
T Consensus 209 ~~~~~a~~l~~~all~~~i~~f~eLL~~p~i~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~~~~~l~~~~~~l~ 288 (393)
T 4b4t_O 209 ERQQLAYDLSISALLGDKIYNFGELLHHPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKIPILAQHESFLR 288 (393)
T ss_dssp HHHHHHHHHHHHHHHCCSSCSTHHHHHSCCTTSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCChHHHhCChHHHHhhcCCchHHHHHHHHHHhcCCHHHHHHHHHHhhhhCcchhhhHHHHH
Confidence 3567899999999999999999999999999999765 69999999999999999999875321 1 56777653 58
Q ss_pred HHHHhHHhhhccc--CCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEEeecCCCCCCCcHHHHH
Q psy10889 98 KKLQNLTIVTLSL--ESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMI 175 (267)
Q Consensus 98 ~KLr~LtLlsLa~--~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~~~~~Rd~~~~q~~~L~ 175 (267)
+|+|++++++|+. .++.|||++|+++|+|+ +++||+|||+||+.|+|+|+|||++++|+|+|++||+|+++||..|.
T Consensus 289 ~kirll~l~~l~~~~~~~~i~f~~ia~~l~i~-~~evE~lli~aI~~glI~GkIDQv~~~v~v~~~~pR~~~~~q~~~l~ 367 (393)
T 4b4t_O 289 QKICLMTLIETVFVKNIRMLSFEDISKATHLP-KDNVEHLVMRAISLGLLKGSIDQVNELVTISWVQPRIISGDQITKMK 367 (393)
T ss_dssp HHHHHHHHHHHHCSSSCCCEEHHHHHHHHTCC-HHHHHHHHHHHHHHSCSSSCEETTTTEECC-----------------
T ss_pred HHHHHHHHHHHhccCCCCcCcHHHHHHHhCcC-HHHHHHHHHHHHHcCCEEEEEcCCCCEEEEEeccCCCCCHHHHHHHH
Confidence 9999999999984 47899999999999998 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy10889 176 TEFQAWSDSCANVLKAIETQIG 197 (267)
Q Consensus 176 ~~L~~W~~~~~~vl~~ie~~i~ 197 (267)
++|..|+++|++++..|+++.+
T Consensus 368 ~~L~~W~~~v~~l~~~ve~~~~ 389 (393)
T 4b4t_O 368 DRLVEWNDQVEKLGKKMEARGQ 389 (393)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999998764
No 3
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=99.36 E-value=4.2e-12 Score=120.64 Aligned_cols=161 Identities=9% Similarity=0.054 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHhCCCeeechhhhcChhhhhhcCCCchhHHHHHHHHhcCCHhHHHhhhh----hc-cCchhHH---HHHH
Q psy10889 27 AAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHLLKLFAHGTYQDYLKQKE----EL-KLPEMTQ---LQKK 98 (267)
Q Consensus 27 ~aa~~lI~~aL~~p~vf~F~eLL~~p~vq~L~~s~~~~~~~LL~lFa~Gt~~dy~~~~~----~~-~~p~L~~---~~~~ 98 (267)
..+.=++..+|..-+.+.+.+++..|......+.+..|+.+|+..|..|++..|..... .+ ..|.|.+ ...+
T Consensus 221 ~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~ 300 (394)
T 3txn_A 221 TSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYD 300 (394)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 34555777788888889999999988766664445788999999999999999987643 12 3455543 4688
Q ss_pred HHHhHHhhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEEeecCCCCCCCcHHHHHHHH
Q psy10889 99 KLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEF 178 (267)
Q Consensus 99 KLr~LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~~~~~Rd~~~~q~~~L~~~L 178 (267)
+++...|..+...++.|+++.|++.++++ ++++|.+|+++|..|.|.|+|||++++|++....+|+ ...+...+.+
T Consensus 301 ~Ir~~~L~~i~~pYsrIsl~~iA~~l~ls-~~evE~~L~~lI~dg~I~a~IDq~~giv~~~~~~~r~---~~y~~ale~l 376 (394)
T 3txn_A 301 TMLEQNLCRIIEPYSRVQVAHVAESIQLP-MPQVEKKLSQMILDKKFSGILDQGEGVLIVFEETPVD---KTYERVLETI 376 (394)
T ss_dssp HHHHHHHHHHHTTCSEEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSSCEEEETTTTEEEECCC-----------------
T ss_pred HHHHHHHHHHhHhhceeeHHHHHHHHCcC-HHHHHHHHHHHHHCCCeeEEEcCCCCEEEECCCcchh---hHHHHHHHHH
Confidence 99999999999999999999999999997 9999999999999999999999999999998776664 3345566788
Q ss_pred HHHHHHHHHHHHH
Q psy10889 179 QAWSDSCANVLKA 191 (267)
Q Consensus 179 ~~W~~~~~~vl~~ 191 (267)
.+|...++.++..
T Consensus 377 ~~ls~vVd~L~~~ 389 (394)
T 3txn_A 377 QSMGKVVDTLYQK 389 (394)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 9999988877743
No 4
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.89 E-value=2.7e-09 Score=102.27 Aligned_cols=164 Identities=16% Similarity=0.147 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHhCCCeeechhhhcChhhhhhcCCCchhHHHHHHHHhcCCHhHHHhhhhh----c-cCchh---------
Q psy10889 27 AAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHLLKLFAHGTYQDYLKQKEE----L-KLPEM--------- 92 (267)
Q Consensus 27 ~aa~~lI~~aL~~p~vf~F~eLL~~p~vq~L~~s~~~~~~~LL~lFa~Gt~~dy~~~~~~----~-~~p~L--------- 92 (267)
.+..-+|..++.+|..-.+..++.-+.... ...+...+..|+.+|..+.+..|...... + ..|..
T Consensus 259 ~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~-~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~ 337 (445)
T 4b4t_P 259 PVLSHIVYFLVLSPYGNLQNDLIHKIQNDN-NLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHH 337 (445)
T ss_dssp HHHHHHHHHHHHSSCSSTTHHHHHSHHHHS-SCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHH
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHhhcc-cccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHH
Confidence 456677788888888777888876542211 11234678999999999998888765331 1 11211
Q ss_pred HHHHHHHHHhHHhhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEEeecCCCCCCCcHH
Q psy10889 93 TQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVT 172 (267)
Q Consensus 93 ~~~~~~KLr~LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~~~~~Rd~~~~q~~ 172 (267)
-......++.-.|..++..++.|+++.|++.|+++ ++++|.++.++|..|.|.|+|||++++|++.....
T Consensus 338 ~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~l~-~~evE~~ls~mI~~g~i~akIDq~~giV~F~~~~~--------- 407 (445)
T 4b4t_P 338 WEDLQKRVIEHNLRVISEYYSRITLLRLNELLDLT-ESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKN--------- 407 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHTSC-HHHHHHHHHHHHHHTSSCCEEETTTTEEEC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhCcC-HHHHHHHHHHHHHCCCEEEEEcCCCCEEEECCCCC---------
Confidence 23456777777788888889999999999999998 99999999999999999999999999877654321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10889 173 NMITEFQAWSDSCANVLKAIETQIGKANSE 202 (267)
Q Consensus 173 ~L~~~L~~W~~~~~~vl~~ie~~i~~a~~~ 202 (267)
-.+.|..|..++++++..|+.-..-.+.|
T Consensus 408 -~~~~l~~W~~~i~~l~~~v~k~~~lI~kE 436 (445)
T 4b4t_P 408 -SSQLLNEWSHNVDELLEHIETIGHLITKE 436 (445)
T ss_dssp ------------------------------
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13578999999999999997655555443
No 5
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=98.67 E-value=2.4e-08 Score=86.59 Aligned_cols=99 Identities=13% Similarity=0.199 Sum_probs=79.0
Q ss_pred hhHHHHHHHHhcCCHhHHHhhhhhccCchhH---HHHHHHHHhHHhhhccc------CCcccCHHHHHHHhCCC-----C
Q psy10889 63 AGYYHLLKLFAHGTYQDYLKQKEELKLPEMT---QLQKKKLQNLTIVTLSL------ESKCIPYDKLLKELDIS-----N 128 (267)
Q Consensus 63 ~~~~~LL~lFa~Gt~~dy~~~~~~~~~p~L~---~~~~~KLr~LtLlsLa~------~~k~IsY~~I~~~L~I~-----~ 128 (267)
..+.+|..++..||+..|.+..+......+. -..+.|+|.+.+.++.. ....||++.|+.+|+++ +
T Consensus 81 ~~y~~L~~Avr~Gdl~~f~~~l~~~~~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~~~~~ 160 (203)
T 3t5x_A 81 MQFAEVTRAVSEGNLLLLHEALAKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVEDVD 160 (203)
T ss_dssp GGGHHHHHHHHHTCHHHHHHHHHHTHHHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTCTTCC
T ss_pred hHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCC
Confidence 3588999999999999998865411101111 13578999988887764 57899999999999753 4
Q ss_pred hhhHHHHHHHHHhcCccEEEecCCCCeEEEEee
Q psy10889 129 VRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFA 161 (267)
Q Consensus 129 ~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~~~ 161 (267)
.+|||.+|..+|+.|.|+|+||+.++++.++..
T Consensus 161 ~~evE~ila~lI~~G~Ikg~I~~~~~~lVlsk~ 193 (203)
T 3t5x_A 161 IDEVQCILANLIYMGHVKGYISHQHQKLVVSKQ 193 (203)
T ss_dssp HHHHHHHHHHHHHHTSSCEEEETTTTEEEECSS
T ss_pred HHHHHHHHHHHHHcCceEEEEcccccEEEECCC
Confidence 899999999999999999999999999998754
No 6
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.66 E-value=1.2e-07 Score=90.22 Aligned_cols=136 Identities=15% Similarity=0.116 Sum_probs=98.7
Q ss_pred HHHHHHHHHhCCCeeec-hhhhcChhhhhhcC-CC-chhHHHHHHHHhcCCHhHHHhhh-h----hc-cCchhH---HHH
Q psy10889 29 AVELIKQVLEAPGIFMF-KELIDMPLIKELDT-SP-HAGYYHLLKLFAHGTYQDYLKQK-E----EL-KLPEMT---QLQ 96 (267)
Q Consensus 29 a~~lI~~aL~~p~vf~F-~eLL~~p~vq~L~~-s~-~~~~~~LL~lFa~Gt~~dy~~~~-~----~~-~~p~L~---~~~ 96 (267)
+.-.+..++..++.-++ ..++..|.+..... .| ..++.+++..|-.+.+..|.... . .+ ..|.|. ...
T Consensus 250 ~~y~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~l~~h~~~l 329 (429)
T 4b4t_R 250 ATYASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASDYASYFPYLLETYANVLIPCKYLNRHADFF 329 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHSTTTTTCTTSTTTHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhccCHHHHHHHHHH
Confidence 34444455554443332 23566666655433 33 35677888889889998875431 1 11 224443 457
Q ss_pred HHHHHhHHhhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEEeecCCC
Q psy10889 97 KKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRD 165 (267)
Q Consensus 97 ~~KLr~LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~~~~~Rd 165 (267)
.+.+|...++.++..+++|+++.+++.|+++ +.++|.+|.++|..|-|.|||||++++|++....+|.
T Consensus 330 ~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s-~~~~E~~L~~lI~~g~l~akID~~~giv~~~~~d~~~ 397 (429)
T 4b4t_R 330 VREMRRKVYAQLLESYKTLSLKSMASAFGVS-VAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRPDNKN 397 (429)
T ss_dssp HHHHHHHHHHHHHHTCSEEEHHHHHHHHTSC-HHHHHHHHHHHHHHTSSCEEEETTTTEEEECC-----
T ss_pred HHHHHHHHHHHHhHHhceeeHHHHHHHhCcC-HHHHHHHHHHHHHcCCeEEEEcCCCCEEEECCCCchh
Confidence 9999999999999999999999999999998 9999999999999999999999999999998777764
No 7
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.48 E-value=4.6e-07 Score=82.37 Aligned_cols=127 Identities=15% Similarity=0.191 Sum_probs=82.1
Q ss_pred chhHHHHHHHHhcCCHhHHHhhhh----hc-cCchhH---HHHHHHHHhHHhhhcccCCcccCHHHHHHHhCCCChhhHH
Q psy10889 62 HAGYYHLLKLFAHGTYQDYLKQKE----EL-KLPEMT---QLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLE 133 (267)
Q Consensus 62 ~~~~~~LL~lFa~Gt~~dy~~~~~----~~-~~p~L~---~~~~~KLr~LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE 133 (267)
...+..++..|..+++..|..... .+ ..+.+. ......++...+..++...+.|+++.|++.|+++ +.++|
T Consensus 296 ~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~-~~~~E 374 (434)
T 4b4t_Q 296 IDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLD-TQQVE 374 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCC-HHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcC-HHHHH
Confidence 456888999999999999987543 11 233332 3457778888899999999999999999999998 99999
Q ss_pred HHHHHHHhcCccEEEecCCCCeEEEEeecCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10889 134 DLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQAWSDSCANVLKAIETQIGKA 199 (267)
Q Consensus 134 ~lvI~aI~~gLI~GkIDQ~~~~v~V~~~~~Rd~~~~q~~~L~~~L~~W~~~~~~vl~~ie~~i~~a 199 (267)
.+|.++|..|.|.|+|||.+++|++.....++ .....|.+.++++...|+....+|
T Consensus 375 ~~l~~lI~~~~i~a~id~~~g~v~~~~~~~~~----------~~~~~~l~~~~~l~~~vd~L~~ka 430 (434)
T 4b4t_Q 375 GKLSQMILDKIFYGVLDQGNGWLYVYETPNQD----------ATYDSALELVGQLNKVVDQLFEKA 430 (434)
T ss_dssp HHHHHHHHHTSSCCEEETTTTEEECC----------------------------------------
T ss_pred HHHHHHHhCCCcceecccccCeEeeCCCcchh----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999986554442 234455555555555555444333
No 8
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=98.21 E-value=3.4e-06 Score=63.31 Aligned_cols=56 Identities=18% Similarity=0.221 Sum_probs=50.4
Q ss_pred hcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEEeecC
Q psy10889 107 TLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIG 163 (267)
Q Consensus 107 sLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~~~~~ 163 (267)
.++..+..|+++.|++.|+++ .+++|.+|.++|..|-|.|+|||++++|+++...+
T Consensus 23 ~is~~Y~~Isl~~La~ll~ls-~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~~e~ 78 (84)
T 1ufm_A 23 SASKLYNNITFEELGALLEIP-AAKAEKIASQMITEGRMNGFIDQIDGIVHFETREA 78 (84)
T ss_dssp HHHHSCSEEEHHHHHHHTTSC-HHHHHHHHHHHHHTTSSCEEEETTTTEEEECCSSC
T ss_pred HHHHhcCeeeHHHHHHHHCcC-HHHHHHHHHHHHhCCcEEEEEeCCCCEEEeCCccc
Confidence 456679999999999999999 99999999999999999999999999998764333
No 9
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=3.6e-06 Score=82.33 Aligned_cols=92 Identities=22% Similarity=0.340 Sum_probs=71.3
Q ss_pred hhHHHHHHHHhcCCHhHHHhhhhh----c---cCchhHHHHHHHHHhHH----hhhcccCCcccCHHHHHHHhCCCChhh
Q psy10889 63 AGYYHLLKLFAHGTYQDYLKQKEE----L---KLPEMTQLQKKKLQNLT----IVTLSLESKCIPYDKLLKELDISNVRD 131 (267)
Q Consensus 63 ~~~~~LL~lFa~Gt~~dy~~~~~~----~---~~p~L~~~~~~KLr~Lt----LlsLa~~~k~IsY~~I~~~L~I~~~~e 131 (267)
.+|+.|..+|..|++..|.+.... + +.-. ++.+++... |..+......||+++|+..|++++..+
T Consensus 343 ~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty~----LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~ee 418 (523)
T 4b4t_S 343 LPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDDTYQ----LCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQT 418 (523)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCTH----HHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhcceeccCChhH----HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHH
Confidence 458999999999999999886431 1 1112 333443332 444555678899999999999987889
Q ss_pred HHHHHHHHHhcCccEEEecCCCCeEEE
Q psy10889 132 LEDLIIEAIYSDIIHGKLDQRNSSLEL 158 (267)
Q Consensus 132 vE~lvI~aI~~gLI~GkIDQ~~~~v~V 158 (267)
+|.+|-++|+.|.|+|+||+.++.|..
T Consensus 419 aE~iVAkmI~dG~I~A~Idh~~g~v~s 445 (523)
T 4b4t_S 419 VEYMVSRAIRDGVIEAKINHEDGFIET 445 (523)
T ss_dssp HHHHHHHHHHHTSSCCEECTTTCCEEC
T ss_pred HHHHHHHHHHcCCceEEEecCCCEEEe
Confidence 999999999999999999999997653
No 10
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=97.83 E-value=2.4e-05 Score=75.43 Aligned_cols=97 Identities=13% Similarity=0.121 Sum_probs=73.4
Q ss_pred HHHHHHHHhcCCHhHHHhhhhhccCchh---H-HHHHHHHHhHHhhhcc----------cCCcccCHHHHHHHhCC----
Q psy10889 65 YYHLLKLFAHGTYQDYLKQKEELKLPEM---T-QLQKKKLQNLTIVTLS----------LESKCIPYDKLLKELDI---- 126 (267)
Q Consensus 65 ~~~LL~lFa~Gt~~dy~~~~~~~~~p~L---~-~~~~~KLr~LtLlsLa----------~~~k~IsY~~I~~~L~I---- 126 (267)
+..|..++..||+..|.+..+......+ . -..+.|+|.+++-+|. .+...||++.|+.+|++
T Consensus 299 y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gily~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i~~aL~~~~~~ 378 (455)
T 3t5v_B 299 WSVLYKHVRYGNIQGVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERVLQLSIGP 378 (455)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHhhccCc
Confidence 7789999999999999986441100111 1 2356777777543332 23378999999999984
Q ss_pred ----------------CChhhHHHHHHHHHhcCccEEEecCCCCeEEEEee
Q psy10889 127 ----------------SNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFA 161 (267)
Q Consensus 127 ----------------~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~~~ 161 (267)
.+.+|||-+|..+|+.|+|+|+||+.++++.++..
T Consensus 379 ~~~~~~~~~~~~~~~~~~~devEcIlA~LI~~G~IkGyIsh~~~~lVlSK~ 429 (455)
T 3t5v_B 379 TFEDPGAQEITIYNGIHSPKNVENVLVTLINLGLLRANCFPQLQLCVVKKT 429 (455)
T ss_dssp CTTSTTCCCCCTTTSSCCSSCHHHHHHHHHHHTSCCEEEETTTTEEEECCC
T ss_pred cccccccccccccccCCCHHHHHHHHHHHHHcCCeEEEEecCCCEEEECCC
Confidence 14889999999999999999999999999999755
No 11
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=93.91 E-value=0.1 Score=45.40 Aligned_cols=74 Identities=15% Similarity=0.116 Sum_probs=61.7
Q ss_pred hhHHHHHHHHhcCCHhHHHhhhhhccCc--h---hHHHHHHHHHhHHhhhcccCCcccCHHHHHHHhCCCChhhHHHHHH
Q psy10889 63 AGYYHLLKLFAHGTYQDYLKQKEELKLP--E---MTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLII 137 (267)
Q Consensus 63 ~~~~~LL~lFa~Gt~~dy~~~~~~~~~p--~---L~~~~~~KLr~LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI 137 (267)
...++|-+.+..|+|..|-.... +.| . +.+....++|.-.+-.++..+..||.+++++.|+++|.++++.++-
T Consensus 136 ~~al~l~~al~~GnY~kff~l~~--~~p~~~~~~~~~~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~ 213 (229)
T 4b0z_A 136 EWVISLEQNVMEGAFDKVASMIR--SCNFPEFSYFMKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAE 213 (229)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH--TCCCGGGHHHHHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh--cCccchHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHH
Confidence 45678899999999999977655 333 2 3455688899988888888889999999999999999999999998
Q ss_pred H
Q psy10889 138 E 138 (267)
Q Consensus 138 ~ 138 (267)
+
T Consensus 214 ~ 214 (229)
T 4b0z_A 214 E 214 (229)
T ss_dssp H
T ss_pred H
Confidence 7
No 12
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=92.33 E-value=0.17 Score=36.61 Aligned_cols=54 Identities=15% Similarity=0.283 Sum_probs=48.1
Q ss_pred hhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEE
Q psy10889 105 IVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELD 159 (267)
Q Consensus 105 LlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~ 159 (267)
+++....+++++.++||.++++. ..++-+-|-+....|.|.|-||...+-++|+
T Consensus 12 Fi~yIk~~Kvv~LedLA~~F~l~-t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs 65 (72)
T 1wi9_A 12 FINYIKKSKVVLLEDLAFQMGLR-TQDAINRIQDLLTEGTLTGVIDDRGKFIYIT 65 (72)
T ss_dssp HHHHHHHCSEECHHHHHHHHCSC-HHHHHHHHHHHHHHSSSCEEECTTCCEEECC
T ss_pred HHHHHHHcCeeeHHHHHHHhCCC-hHHHHHHHHHHHHCCCeEEEEeCCCCEEEec
Confidence 45556678999999999999998 8888888899999999999999999999886
No 13
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=88.65 E-value=2.2 Score=32.29 Aligned_cols=81 Identities=19% Similarity=0.174 Sum_probs=55.8
Q ss_pred HHHHHhHHhhhcccCCcccCHHHHHHHh-CCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEE-eecCCCCCCCcHHHH
Q psy10889 97 KKKLQNLTIVTLSLESKCIPYDKLLKEL-DISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELD-FAIGRDINPGDVTNM 174 (267)
Q Consensus 97 ~~KLr~LtLlsLa~~~k~IsY~~I~~~L-~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~-~~~~Rd~~~~q~~~L 174 (267)
-.|-+.+-|..|......++|.+|++.+ +|+ ...|=.-|=..-..|||.-+.+ ..+.+. ...|+ ++...
T Consensus 25 ~~~wrl~IL~~L~~g~~~~~~~eL~~~l~gis-~~~ls~~L~~Le~~GlV~r~~~---r~~~y~LT~~G~-----~l~~~ 95 (111)
T 3df8_A 25 GKKYTMLIISVLGNGSTRQNFNDIRSSIPGIS-STILSRRIKDLIDSGLVERRSG---QITTYALTEKGM-----NVRNS 95 (111)
T ss_dssp HSTTHHHHHHHHTSSSSCBCHHHHHHTSTTCC-HHHHHHHHHHHHHTTSEEEEES---SSEEEEECHHHH-----HHHHH
T ss_pred cCccHHHHHHHHhcCCCCCCHHHHHHHccCCC-HHHHHHHHHHHHHCCCEEEeec---CcEEEEECccHH-----HHHHH
Confidence 3445555555565444456799999999 898 8888888888899999999888 223222 12333 45556
Q ss_pred HHHHHHHHHHHH
Q psy10889 175 ITEFQAWSDSCA 186 (267)
Q Consensus 175 ~~~L~~W~~~~~ 186 (267)
...|..|....+
T Consensus 96 l~~l~~w~~~~~ 107 (111)
T 3df8_A 96 LMPLLQYISVLD 107 (111)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 777888877643
No 14
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=87.41 E-value=1.4 Score=32.04 Aligned_cols=59 Identities=8% Similarity=0.092 Sum_probs=43.0
Q ss_pred HHHhHHhhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEE
Q psy10889 99 KLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELD 159 (267)
Q Consensus 99 KLr~LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~ 159 (267)
..++|.++.-...+..+++.+||+.|+|+ ...|...|-..-..|+|.-. +.....-.|.
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvs-r~tV~~~L~~Le~~G~I~~~-g~~~~~W~i~ 70 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTP-KKEINRVLYSLAKKGKLQKE-AGTPPLWKIA 70 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEE-SSSSCEEEEC
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEec-CCCCCeeEEe
Confidence 34455555543445689999999999998 89999999999999999643 3444444443
No 15
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=86.48 E-value=5.5 Score=29.62 Aligned_cols=70 Identities=10% Similarity=0.071 Sum_probs=51.5
Q ss_pred CcccCHHHHHHHh-CCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEEeecCCCCCCCcHHHHHHHHHHHHHHH
Q psy10889 112 SKCIPYDKLLKEL-DISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQAWSDSC 185 (267)
Q Consensus 112 ~k~IsY~~I~~~L-~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~~~~~Rd~~~~q~~~L~~~L~~W~~~~ 185 (267)
...+++.+|++.+ +|+ ...|=..|=.....|+|..+-+...+....-+.++. + .++-.....+..|....
T Consensus 25 ~~~~~~~eLa~~l~~is-~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~--G-~~l~~~~~~l~~w~~~~ 95 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNIT-QKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEY--G-RSLEGILDMLXAWGANH 95 (107)
T ss_dssp TCCBCHHHHHHHCTTSC-HHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTT--G-GGGHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHhcCCC-HHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECcc--H-HHHHHHHHHHHHHHHHh
Confidence 3578999999999 998 888999999999999999999876655444333332 1 13445667777887653
No 16
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=83.69 E-value=1.7 Score=31.09 Aligned_cols=48 Identities=10% Similarity=0.114 Sum_probs=39.7
Q ss_pred HhHHhhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEe
Q psy10889 101 QNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKL 149 (267)
Q Consensus 101 r~LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkI 149 (267)
+.|.++.-...+..+++.+||+.|+|+ ...|...|-.....|+|.+.-
T Consensus 18 ~IL~~L~~~~~~~~~t~~eLA~~Lgvs-~~tV~~~L~~L~~~G~I~~~g 65 (77)
T 1qgp_A 18 RILKFLEELGEGKATTAHDLSGKLGTP-KKEINRVLYSLAKKGKLQKEA 65 (77)
T ss_dssp HHHHHHHHHCSSSCEEHHHHHHHHCCC-HHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEecC
Confidence 355555554556689999999999998 899999999999999998864
No 17
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=82.27 E-value=1 Score=35.01 Aligned_cols=71 Identities=17% Similarity=0.311 Sum_probs=45.1
Q ss_pred CCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEE---ecCCCCeEEEEeecCCCCCCCcHHHHHHHHHHHH
Q psy10889 111 ESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGK---LDQRNSSLELDFAIGRDINPGDVTNMITEFQAWS 182 (267)
Q Consensus 111 ~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~Gk---IDQ~~~~v~V~~~~~Rd~~~~q~~~L~~~L~~W~ 182 (267)
.+..+||.+|++.++++ ...+-..+=.....|+|.+. +|...--..++....=.+.+.....+.+.|..|-
T Consensus 15 ~~~~~~~~ela~~lg~s-~~tv~~~l~~L~~~G~i~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~l~~~~ 88 (141)
T 1i1g_A 15 KDARTPFTEIAKKLGIS-ETAVRKRVKALEEKGIIEGYTIKINPKKLGYSLVTITGVDTKPEKLFEVAEKLKEYD 88 (141)
T ss_dssp HCTTCCHHHHHHHHTSC-HHHHHHHHHHHHHHTSSCCCCCCCCSGGGTCCEEEEEEEEECGGGHHHHHHHHHHST
T ss_pred HcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEeccccccChHHhCccEEEEEEEEECchhHHHHHHHHhcCC
Confidence 34568999999999998 88888888888889999765 3332111111110000113356677777777764
No 18
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=80.56 E-value=7.9 Score=29.48 Aligned_cols=40 Identities=3% Similarity=0.027 Sum_probs=35.2
Q ss_pred ccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCC
Q psy10889 114 CIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNS 154 (267)
Q Consensus 114 ~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~ 154 (267)
.++..+|++.++++ ...|=.+|=.....|+|.-.-|...+
T Consensus 45 ~~t~~eLa~~l~~~-~~tvs~~l~~Le~~Glv~r~~~~~D~ 84 (145)
T 3g3z_A 45 SRTQKHIGEKWSLP-KQTVSGVCKTLAGQGLIEWQEGEQDR 84 (145)
T ss_dssp SBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEECCCSSCG
T ss_pred CCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEeeccCCCCC
Confidence 49999999999998 88999999999999999987776554
No 19
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=80.36 E-value=3.1 Score=32.02 Aligned_cols=80 Identities=18% Similarity=0.187 Sum_probs=57.3
Q ss_pred ccCCcc-cCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCC--CeEEEEeecCCCCCCCc-HHHHHHHHHHHHHH
Q psy10889 109 SLESKC-IPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRN--SSLELDFAIGRDINPGD-VTNMITEFQAWSDS 184 (267)
Q Consensus 109 a~~~k~-IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~--~~v~V~~~~~Rd~~~~q-~~~L~~~L~~W~~~ 184 (267)
...... ++-.+|++.++++ ...|-..|=.....|+|.-.-+... +..++-.+.+ +.+ .+.+...+..|.+.
T Consensus 36 ~~~~~~~~t~~eLa~~l~~s-~sTV~r~L~~L~~~GlV~r~~~~~d~~~~~~~y~~~~----~~~~~~~i~~~~~~~~~~ 110 (123)
T 3r0a_A 36 LNEPDRWIDTDALSKSLKLD-VSTVQRSVKKLHEKEILQRSQQNLDGGGYVYIYKIYS----KNQIRNIIQKIVQSWADR 110 (123)
T ss_dssp HHSTTCCEEHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECC----HHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEeeCCccCCCcceEEEecCC----HHHHHHHHHHHHHHHHHH
Confidence 344445 9999999999998 8999999999999999997655432 2333333322 233 45578899999998
Q ss_pred HHHHHHHHH
Q psy10889 185 CANVLKAIE 193 (267)
Q Consensus 185 ~~~vl~~ie 193 (267)
+...++.+.
T Consensus 111 ~~~~l~~~~ 119 (123)
T 3r0a_A 111 LGQELKEWE 119 (123)
T ss_dssp HHHTTTTTC
T ss_pred HHHHHHHHh
Confidence 887766543
No 20
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=78.74 E-value=14 Score=27.06 Aligned_cols=37 Identities=8% Similarity=0.009 Sum_probs=33.0
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEec
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLD 150 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkID 150 (267)
..++..+|++.++++ ...|-..|=.....|+|.-.-+
T Consensus 33 ~~~~~~ela~~l~is-~~tv~~~l~~L~~~gli~~~~~ 69 (114)
T 2oqg_A 33 ADQSASSLATRLPVS-RQAIAKHLNALQACGLVESVKV 69 (114)
T ss_dssp SCBCHHHHHHHSSSC-HHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeeEEec
Confidence 458999999999998 8899999999999999987655
No 21
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=78.54 E-value=11 Score=26.81 Aligned_cols=69 Identities=10% Similarity=0.143 Sum_probs=46.5
Q ss_pred CcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCC---eEEEEeecCCCCCCCcHHHHHHHHHHHHHHHH
Q psy10889 112 SKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNS---SLELDFAIGRDINPGDVTNMITEFQAWSDSCA 186 (267)
Q Consensus 112 ~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~---~v~V~~~~~Rd~~~~q~~~L~~~L~~W~~~~~ 186 (267)
+..++..+|++.++++ ...|-..|=.....|+|.-.-+...+ .... +... ++-+..+...+..|.+.+.
T Consensus 34 ~~~~t~~ela~~l~is-~~tv~~~l~~L~~~g~v~~~~~~~~~~gr~~~~-~~l~----~~~~~~~~~~~~~~~~~~~ 105 (109)
T 2d1h_A 34 EKPITSEELADIFKLS-KTTVENSLKKLIELGLVVRTKTEGKKIGRPKYY-YSIS----SNILEKIRNDLLNCAKRME 105 (109)
T ss_dssp CSCEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEEC-------CCEE-EEEC----TTHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEeeccccCCCCCCCee-eecC----HHHHHHHHHHHHHHHHHHh
Confidence 5679999999999998 89999999999999999987654432 1211 1111 2445556666666666543
No 22
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=77.63 E-value=16 Score=25.86 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=34.7
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecC
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQ 151 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ 151 (267)
..++..+|++.++++ ...|-..|=.....|+|...-+.
T Consensus 33 ~~~s~~ela~~l~is-~~tv~~~l~~L~~~glv~~~~~~ 70 (109)
T 1sfx_A 33 GGMRVSEIARELDLS-ARFVRDRLKVLLKRGFVRREIVE 70 (109)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEEEE
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEEEeec
Confidence 459999999999998 89999999999999999988776
No 23
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=77.63 E-value=18 Score=28.30 Aligned_cols=79 Identities=14% Similarity=0.212 Sum_probs=56.6
Q ss_pred HHHhHHhhhcccCCcccCHHHHHHHh-CCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEEee--cCCCCCCCcHHHHH
Q psy10889 99 KLQNLTIVTLSLESKCIPYDKLLKEL-DISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFA--IGRDINPGDVTNMI 175 (267)
Q Consensus 99 KLr~LtLlsLa~~~k~IsY~~I~~~L-~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~~~--~~Rd~~~~q~~~L~ 175 (267)
|-+.+-|..|. ....+|.+|++.+ +|+ ...|=..|=+.-..|||.=+.++....-..-.. .|| ++....
T Consensus 26 kW~l~IL~~L~--~g~~rf~eL~~~l~gIs-~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~-----~l~~~l 97 (131)
T 4a5n_A 26 KWKGILFYHMI--DGKKRFNEFRRICPSIT-QRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGR-----TLEPIV 97 (131)
T ss_dssp SSHHHHHHHHT--TSCBCHHHHHHHCTTSC-HHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGG-----GGHHHH
T ss_pred cCHHHHHHHHh--cCCcCHHHHHHHhcccC-HHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHH-----HHHHHH
Confidence 44445555554 4679999999999 998 888999998999999999888776543222222 344 455677
Q ss_pred HHHHHHHHHH
Q psy10889 176 TEFQAWSDSC 185 (267)
Q Consensus 176 ~~L~~W~~~~ 185 (267)
..|..|...-
T Consensus 98 ~~l~~W~~~~ 107 (131)
T 4a5n_A 98 LQMKEWGESN 107 (131)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7888897653
No 24
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=77.04 E-value=10 Score=26.90 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=33.3
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecC
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQ 151 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ 151 (267)
..+++.+|++.++++ ...|-..|=.....|+|...-+.
T Consensus 29 ~~~~~~ela~~l~is-~~tvs~~l~~L~~~gli~~~~~~ 66 (100)
T 1ub9_A 29 RKAPFSQIQKVLDLT-PGNLDSHIRVLERNGLVKTYKVI 66 (100)
T ss_dssp SEEEHHHHHHHTTCC-HHHHHHHHHHHHHTTSEEEEEEC
T ss_pred CCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEEecC
Confidence 479999999999998 88999999899999999976643
No 25
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=76.57 E-value=11 Score=28.49 Aligned_cols=42 Identities=14% Similarity=0.080 Sum_probs=36.7
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCe
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSS 155 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~ 155 (267)
..++..+|++.++++ ...|-..|=.....|+|.-.-|..++.
T Consensus 42 ~~~t~~~la~~l~~s-~~~vs~~l~~Le~~gli~r~~~~~d~R 83 (144)
T 1lj9_A 42 PGIIQEKIAELIKVD-RTTAARAIKRLEEQGFIYRQEDASNKK 83 (144)
T ss_dssp TTEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEECSSCTT
T ss_pred cCcCHHHHHHHHCCC-HhHHHHHHHHHHHCCCEEeecCCCCCc
Confidence 478999999999998 899999999999999999988775544
No 26
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=76.53 E-value=14 Score=26.14 Aligned_cols=41 Identities=12% Similarity=0.066 Sum_probs=34.9
Q ss_pred cCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecC
Q psy10889 110 LESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQ 151 (267)
Q Consensus 110 ~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ 151 (267)
..+..++..+|++.++++ ...|-..|=.....|+|...-+.
T Consensus 34 ~~~~~~s~~ela~~l~is-~~tvs~~l~~L~~~glv~~~~~~ 74 (99)
T 3cuo_A 34 SGSPGTSAGELTRITGLS-ASATSQHLARMRDEGLIDSQRDA 74 (99)
T ss_dssp TTCCSEEHHHHHHHHCCC-HHHHHHHHHHHHHTTSEEEEECS
T ss_pred HhCCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEEecC
Confidence 345679999999999998 88899999899999999877553
No 27
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=76.45 E-value=8.7 Score=28.56 Aligned_cols=63 Identities=8% Similarity=0.105 Sum_probs=47.5
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEEeecCCCCCCCcHHHHHHHHHHHHHH
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQAWSDS 184 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~~~~~Rd~~~~q~~~L~~~L~~W~~~ 184 (267)
..+++.+|++.++++ ...|-..|=.....|+|..+-+.. .+. |. +.++.+..+...|..|...
T Consensus 37 ~~~s~~eLa~~lgis-~stvs~~L~~L~~~GlV~~~~~gr--~~~--y~----l~~~~~~~l~~~l~~~~~~ 99 (108)
T 2kko_A 37 GERAVEAIATATGMN-LTTASANLQALKSGGLVEARREGT--RQY--YR----IAGEDVARLFALVQVVADE 99 (108)
T ss_dssp CCEEHHHHHHHHTCC-HHHHHHHHHHHHHHTSEEEEEETT--EEE--EE----ESCHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEEEEeCC--EEE--EE----EChHHHHHHHHHHHHHhhH
Confidence 568999999999998 899999998999999998875432 222 22 2234677788888888754
No 28
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=76.33 E-value=18 Score=26.87 Aligned_cols=69 Identities=13% Similarity=0.140 Sum_probs=48.3
Q ss_pred cccCHHHHHHHh-CCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEEeecCCCCCCCcHHHHHHHHHHHHHHH
Q psy10889 113 KCIPYDKLLKEL-DISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITEFQAWSDSC 185 (267)
Q Consensus 113 k~IsY~~I~~~L-~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~~~~~Rd~~~~q~~~L~~~L~~W~~~~ 185 (267)
..+++.+|++.+ +|+ ...|-..|=.....|+|...-+...+....-+.++. + .++-.....+..|...-
T Consensus 34 ~~~~~~eLa~~l~~is-~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~--G-~~~~~~~~~l~~w~~~~ 103 (112)
T 1z7u_A 34 GTKRNGELMRALDGIT-QRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPE--G-YALYDALSSLCHWGETF 103 (112)
T ss_dssp SCBCHHHHHHHSTTCC-HHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHH--H-HHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhccCC-HHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHh--H-HHHHHHHHHHHHHHHHH
Confidence 468999999999 998 899999999999999999998876554433333221 0 13333445566676543
No 29
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=75.74 E-value=3.4 Score=32.57 Aligned_cols=43 Identities=16% Similarity=0.305 Sum_probs=36.3
Q ss_pred cCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEE---EecCCC
Q psy10889 110 LESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHG---KLDQRN 153 (267)
Q Consensus 110 ~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~G---kIDQ~~ 153 (267)
..+..+|+.+|++.++++ ...|-..+-.....|+|.+ .+|...
T Consensus 18 ~~~~~~s~~ela~~lg~s-~~tv~~~l~~L~~~G~i~~~~~~~~~~~ 63 (152)
T 2cg4_A 18 MGNARTAYAELAKQFGVS-PETIHVRVEKMKQAGIITGARIDVSPKQ 63 (152)
T ss_dssp HHCTTSCHHHHHHHHTSC-HHHHHHHHHHHHHHTSEEEEEEEECTTT
T ss_pred HHcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHcCCcceEEEecCHHH
Confidence 345679999999999998 8999999999999999986 567653
No 30
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.70 E-value=7.3 Score=34.54 Aligned_cols=91 Identities=16% Similarity=0.183 Sum_probs=65.9
Q ss_pred hhcChhh-hhhcCCCc-hhHHHHHHHHhcCCHhHHHhhhhhccCch-----hHHHHHHHHHhHHhhhcccCCcccCHHHH
Q psy10889 48 LIDMPLI-KELDTSPH-AGYYHLLKLFAHGTYQDYLKQKEELKLPE-----MTQLQKKKLQNLTIVTLSLESKCIPYDKL 120 (267)
Q Consensus 48 LL~~p~v-q~L~~s~~-~~~~~LL~lFa~Gt~~dy~~~~~~~~~p~-----L~~~~~~KLr~LtLlsLa~~~k~IsY~~I 120 (267)
|-.+|.. .+++++++ ...+++-..+..|+|..|-.....-..|. |-+....++|.-.+-.++..++.||.+.+
T Consensus 126 Le~L~~~~~~~~~d~~Ik~al~le~al~eGnY~kff~l~~~~~~p~~~~~~f~d~l~~~iR~~a~~~i~kaY~~i~l~~~ 205 (274)
T 4b4t_T 126 LQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEFDSFTDILKSAIRDEIAKNTELSYDFLPLSNI 205 (274)
T ss_dssp HHSSSCSSSTTTCCHHHHHHHHHHHHHHHTCSHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHH
T ss_pred HHhcchhhHhHhcChHHHHHHHHHHHHHcCCHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHH
Confidence 3344432 34444442 44677888899999998865433112232 34556889999999999888999999999
Q ss_pred HHHhCCCChhhHHHHHHH
Q psy10889 121 LKELDISNVRDLEDLIIE 138 (267)
Q Consensus 121 ~~~L~I~~~~evE~lvI~ 138 (267)
++.|+.+|..|+.+|+-+
T Consensus 206 ~~~L~F~s~~e~~~F~~~ 223 (274)
T 4b4t_T 206 KALLFFNNEKETEKFALE 223 (274)
T ss_dssp HHHHTCCSHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHH
Confidence 999999999999999865
No 31
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=75.47 E-value=18 Score=27.24 Aligned_cols=43 Identities=5% Similarity=-0.043 Sum_probs=37.2
Q ss_pred CcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCe
Q psy10889 112 SKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSS 155 (267)
Q Consensus 112 ~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~ 155 (267)
+..++..+|++.++++ ...|-..|=.....|+|.-.-|..++.
T Consensus 48 ~~~~~~~ela~~l~~s-~~tvs~~l~~Le~~glv~r~~~~~d~r 90 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVT-QSAITASVDKLEEMGLVVRVRDREDRR 90 (146)
T ss_dssp TSCBCHHHHHHHTTCC-HHHHHHHHHHHHHTTSEEEEECSSCTT
T ss_pred cCCcCHHHHHHHhCCC-chhHHHHHHHHHHCCCEEeecCCCCCc
Confidence 5679999999999998 889999999999999999887765543
No 32
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=75.26 E-value=2.4 Score=34.59 Aligned_cols=41 Identities=12% Similarity=0.115 Sum_probs=34.6
Q ss_pred CCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEE---EecCC
Q psy10889 111 ESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHG---KLDQR 152 (267)
Q Consensus 111 ~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~G---kIDQ~ 152 (267)
.+..+|+.+|++.++++ ...|-..|-.....|+|.+ .+|..
T Consensus 28 ~~~~~s~~eLA~~lglS-~~tv~~~l~~L~~~G~I~~~~~~~d~~ 71 (171)
T 2ia0_A 28 KDARLTISELSEQLKKP-ESTIHFRIKKLQERGVIERYTIILGEQ 71 (171)
T ss_dssp HCTTCCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEEEEEEECTT
T ss_pred HcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEeecccCCHH
Confidence 34569999999999998 8999999999999999975 45554
No 33
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=75.06 E-value=4.6 Score=32.04 Aligned_cols=57 Identities=18% Similarity=0.205 Sum_probs=41.6
Q ss_pred HHhHHhhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEE
Q psy10889 100 LQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLEL 158 (267)
Q Consensus 100 Lr~LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V 158 (267)
++.|..+.....++.++-.+|++.++|+ ..-|+.++-..-.+|+|... -..++-+..
T Consensus 14 l~~L~~La~~~~~~~~s~~~IA~~~~i~-~~~l~kil~~L~~aGlv~s~-rG~~GGy~L 70 (143)
T 3t8r_A 14 LTLMISLAKKEGQGCISLKSIAEENNLS-DLYLEQLVGPLRNAGLIRSV-RGAKGGYQL 70 (143)
T ss_dssp HHHHHHHHTTTTSCCEEHHHHHHHTTCC-HHHHHHHHHHHHHTTSEEEC-SSSSSEEEE
T ss_pred HHHHHHHHhCCCCCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCEEEec-CCCCCCeee
Confidence 3444444433344679999999999998 99999999999999999864 333444443
No 34
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=74.91 E-value=2.7 Score=32.92 Aligned_cols=42 Identities=14% Similarity=0.196 Sum_probs=35.4
Q ss_pred cCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEE---ecCC
Q psy10889 110 LESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGK---LDQR 152 (267)
Q Consensus 110 ~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~Gk---IDQ~ 152 (267)
..+..+|+.+|++.++++ ...|-..|-.....|+|.+. +|..
T Consensus 15 ~~~~~~s~~ela~~lg~s-~~tv~~~l~~L~~~G~i~~~~~~~d~~ 59 (144)
T 2cfx_A 15 KKDSRLSMRELGRKIKLS-PPSVTERVRQLESFGIIKQYTLEVDQK 59 (144)
T ss_dssp HHCSCCCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEEEecccChh
Confidence 344679999999999998 89999999999999999864 5554
No 35
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=74.57 E-value=7.9 Score=29.18 Aligned_cols=38 Identities=16% Similarity=0.047 Sum_probs=33.5
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecC
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQ 151 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ 151 (267)
+.++..+|++.++++ ...|=.-|-.....|+|..+-+.
T Consensus 30 ~~~~~~eLa~~l~is-~~tvs~hL~~L~~~GlV~~~~~g 67 (118)
T 3f6o_A 30 GPATVSELAKPFDMA-LPSFMKHIHFLEDSGWIRTHKQG 67 (118)
T ss_dssp CCEEHHHHHTTCCSC-HHHHHHHHHHHHHTTSEEEEEET
T ss_pred CCCCHHHHHHHhCcC-HHHHHHHHHHHHHCCCeEEEecC
Confidence 567999999999998 88888888888899999987774
No 36
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=74.42 E-value=12 Score=28.00 Aligned_cols=46 Identities=15% Similarity=0.114 Sum_probs=38.9
Q ss_pred CcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEE
Q psy10889 112 SKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLEL 158 (267)
Q Consensus 112 ~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V 158 (267)
+..++..+|++.++++ ...|-..|=.....|+|.-.-|..++....
T Consensus 41 ~~~~~~~ela~~l~~s-~~tvs~~l~~L~~~glv~~~~~~~d~R~~~ 86 (138)
T 3bpv_A 41 EPGIKQDELATFFHVD-KGTIARTLRRLEESGFIEREQDPENRRRYI 86 (138)
T ss_dssp STTCBHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred cCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEeecCCCCceeEE
Confidence 3678999999999998 899999999999999999888776555433
No 37
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=74.37 E-value=6 Score=32.20 Aligned_cols=65 Identities=15% Similarity=0.108 Sum_probs=45.6
Q ss_pred hHHHHHHHHHhHHhhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEE
Q psy10889 92 MTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLEL 158 (267)
Q Consensus 92 L~~~~~~KLr~LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V 158 (267)
|+....-=+|.|..+.....++.++-.+|++.++|+ ..-|+.++-..-.+|||...= ..++-+..
T Consensus 22 lS~~~~yAlr~L~~LA~~~~~~~~s~~eIA~~~~i~-~~~l~kil~~L~~aGlv~s~r-G~~GGy~L 86 (159)
T 3lwf_A 22 ITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLS-EHYLEQLIGPLRNAGIVKSIR-GAHGGYVL 86 (159)
T ss_dssp CCHHHHHHHHHHHHHHHTTTSCCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEC-STTCEEEE
T ss_pred CchHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCeEEEec-CCCCceEe
Confidence 333333335555544444445679999999999998 999999999999999998763 33344333
No 38
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=74.36 E-value=13 Score=27.42 Aligned_cols=66 Identities=20% Similarity=0.161 Sum_probs=48.1
Q ss_pred CcccCHHHHHHHhC-CCChhhHHHHHHHHHhcCccEEEecCCCCeEEEEee--cCCCCCCCcHHHHHHHHHHHHH
Q psy10889 112 SKCIPYDKLLKELD-ISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFA--IGRDINPGDVTNMITEFQAWSD 183 (267)
Q Consensus 112 ~k~IsY~~I~~~L~-I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~~~--~~Rd~~~~q~~~L~~~L~~W~~ 183 (267)
...++|.+|++.++ ++ ...|=..|=.....|+|..+-+...+....-+. .+| ++-.....+.+|..
T Consensus 36 ~~~~~~~eL~~~l~gis-~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~-----~l~~~l~~l~~w~~ 104 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGIS-EKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGE-----KVLPIIDEIAKFGM 104 (107)
T ss_dssp TSCEEHHHHHHHSTTCC-HHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHH-----TTHHHHHHHHHHHH
T ss_pred hCCcCHHHHHHHcccCC-HHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECccHH-----HHHHHHHHHHHHHH
Confidence 45789999999995 98 888999999999999999988876554333333 333 23345567777765
No 39
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=73.95 E-value=5.9 Score=30.32 Aligned_cols=48 Identities=10% Similarity=0.087 Sum_probs=38.1
Q ss_pred HHhHHhhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEE
Q psy10889 100 LQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGK 148 (267)
Q Consensus 100 Lr~LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~Gk 148 (267)
++.|..+.....++.++-.+|++.++|+ ...|+.++-..-..|+|...
T Consensus 12 l~iL~~la~~~~~~~~s~~ela~~~~i~-~~~v~~il~~L~~~Glv~~~ 59 (129)
T 2y75_A 12 LTIMIELAKKHGEGPTSLKSIAQTNNLS-EHYLEQLVSPLRNAGLVKSI 59 (129)
T ss_dssp HHHHHHHHHTTTSCCBCHHHHHHHTTSC-HHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHhCCCCCcCCHHHHHHHHCcC-HHHHHHHHHHHHHCCceEec
Confidence 4444444333345779999999999998 99999999999999999754
No 40
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=73.62 E-value=7 Score=30.50 Aligned_cols=47 Identities=17% Similarity=0.224 Sum_probs=37.7
Q ss_pred hhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEE---EecCC
Q psy10889 105 IVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHG---KLDQR 152 (267)
Q Consensus 105 LlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~G---kIDQ~ 152 (267)
|+.+...+..+|+.+|++.++++ ...|-..+-.....|+|.+ .+|..
T Consensus 8 il~~L~~~~~~~~~ela~~lg~s-~~tv~~~l~~L~~~G~i~~~~~~~d~~ 57 (150)
T 2pn6_A 8 ILKILQYNAKYSLDEIAREIRIP-KATLSYRIKKLEKDGVIKGYYAYINPA 57 (150)
T ss_dssp HHHHHTTCTTSCHHHHHHHHTSC-HHHHHHHHHHHHHTTSSCCCCCCCCGG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCcEEEEEeecCHH
Confidence 33333455679999999999998 8999999999999999987 46653
No 41
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=73.36 E-value=3.5 Score=32.93 Aligned_cols=41 Identities=12% Similarity=0.065 Sum_probs=34.6
Q ss_pred CCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEE---EecCC
Q psy10889 111 ESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHG---KLDQR 152 (267)
Q Consensus 111 ~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~G---kIDQ~ 152 (267)
.+..+|+.+|++.++++ ...|-..+-.....|+|.+ .+|..
T Consensus 21 ~~~~~s~~ela~~lg~s-~~tv~~~l~~L~~~G~i~~~~~~~d~~ 64 (162)
T 2p5v_A 21 ENGRLTNVELSERVALS-PSPCLRRLKQLEDAGIVRQYAALLSPE 64 (162)
T ss_dssp HCTTCCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEeeecccCChH
Confidence 34568999999999998 8999999999999999986 45543
No 42
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=73.31 E-value=3 Score=32.77 Aligned_cols=42 Identities=19% Similarity=0.141 Sum_probs=35.1
Q ss_pred cCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEE---ecCC
Q psy10889 110 LESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGK---LDQR 152 (267)
Q Consensus 110 ~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~Gk---IDQ~ 152 (267)
..+..+|+.+|++.++++ ...+-..+-.....|+|.+. +|..
T Consensus 19 ~~~~~~s~~ela~~lg~s-~~tv~~~l~~L~~~G~i~~~~~~~~~~ 63 (151)
T 2dbb_A 19 SENSRLTYRELADILNTT-RQRIARRIDKLKKLGIIRKFTIIPDID 63 (151)
T ss_dssp HHCTTCCHHHHHHHTTSC-HHHHHHHHHHHHHHTSEEEEEEEECTG
T ss_pred HHcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEEEecCChH
Confidence 345679999999999998 89999999999999999854 5554
No 43
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=73.27 E-value=5.1 Score=29.41 Aligned_cols=45 Identities=11% Similarity=0.259 Sum_probs=36.5
Q ss_pred HHHHhHHhhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEE
Q psy10889 98 KKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHG 147 (267)
Q Consensus 98 ~KLr~LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~G 147 (267)
.+.++|.++. ..+ +++.+|+++|+|+ ...|-..|-..-..|+|.-
T Consensus 18 ~~~~IL~lL~--~~g--~sa~eLAk~LgiS-k~aVr~~L~~Le~eG~I~~ 62 (82)
T 1oyi_A 18 IVCEAIKTIG--IEG--ATAAQLTRQLNME-KREVNKALYDLQRSAMVYS 62 (82)
T ss_dssp HHHHHHHHHS--SST--EEHHHHHHHSSSC-HHHHHHHHHHHHHHTSSEE
T ss_pred HHHHHHHHHH--HcC--CCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEe
Confidence 4555666665 333 9999999999998 8999999999989999875
No 44
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=73.14 E-value=14 Score=28.66 Aligned_cols=80 Identities=10% Similarity=0.089 Sum_probs=52.6
Q ss_pred HHHhHHhhhcccCCcccCHHHHHHHh-CCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEEeecCCCCCCCcHHHHHHH
Q psy10889 99 KLQNLTIVTLSLESKCIPYDKLLKEL-DISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTNMITE 177 (267)
Q Consensus 99 KLr~LtLlsLa~~~k~IsY~~I~~~L-~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~~~~~Rd~~~~q~~~L~~~ 177 (267)
+.+.+-|..|. ...++|.+|++.+ +|+ ...|=..|=.....|+|.-+-+...+....-+.++. + .++-.....
T Consensus 35 ~w~l~IL~~L~--~g~~~~~eLa~~l~gis-~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~--G-~~l~~~l~~ 108 (131)
T 1yyv_A 35 RWGVLILVALR--DGTHRFSDLRRXMGGVS-EXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPL--G-EQVSDXVAA 108 (131)
T ss_dssp HHHHHHHHHGG--GCCEEHHHHHHHSTTCC-HHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHH--H-HHHHHHHHH
T ss_pred CcHHHHHHHHH--cCCCCHHHHHHHhccCC-HHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECcc--H-HHHHHHHHH
Confidence 34444444454 3578999999999 698 889999999999999999998876554333333221 0 123344555
Q ss_pred HHHHHHH
Q psy10889 178 FQAWSDS 184 (267)
Q Consensus 178 L~~W~~~ 184 (267)
+..|...
T Consensus 109 l~~w~~~ 115 (131)
T 1yyv_A 109 LADWIEL 115 (131)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5666553
No 45
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=72.99 E-value=14 Score=28.96 Aligned_cols=66 Identities=14% Similarity=0.018 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHhHHhhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEEeec
Q psy10889 91 EMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFAI 162 (267)
Q Consensus 91 ~L~~~~~~KLr~LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~~~~ 162 (267)
+|++.+.. .|..|+..+..++-.+|++.++++ ...|=.+|=.....|+|.=.-|+..+....-+.+
T Consensus 28 gLt~~q~~-----vL~~L~~~~~~~~~~eLa~~l~~~-~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT 93 (151)
T 4aik_A 28 ELTQTHWV-----TLYNINRLPPEQSQIQLAKAIGIE-QPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLT 93 (151)
T ss_dssp CCCHHHHH-----HHHHHHHSCTTSCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEEC
T ss_pred CCCHHHHH-----HHHHHHHcCCCCcHHHHHHHHCcC-HHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcC
Confidence 46665432 223333444566778999999998 8899999999999999999999887765554443
No 46
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=72.39 E-value=2.4 Score=34.64 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=34.5
Q ss_pred CCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEE---EecCC
Q psy10889 111 ESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHG---KLDQR 152 (267)
Q Consensus 111 ~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~G---kIDQ~ 152 (267)
.+..+||.+|++.++++ ...|-..|-.....|+|.+ .+|..
T Consensus 38 ~~~~~s~~eLA~~lglS-~~tv~~rl~~L~~~G~I~~~~a~vd~~ 81 (171)
T 2e1c_A 38 NDGKAPLREISKITGLA-ESTIHERIRKLRESGVIKKFTAIIDPE 81 (171)
T ss_dssp HCTTCCHHHHHHHHTSC-HHHHHHHHHHHHHTTSSCCCCCCCCGG
T ss_pred HcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEeeeEEECHH
Confidence 34679999999999998 8999999999999999976 35543
No 47
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=70.46 E-value=8.1 Score=30.90 Aligned_cols=48 Identities=19% Similarity=0.177 Sum_probs=38.6
Q ss_pred hhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEE---EecCCC
Q psy10889 105 IVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHG---KLDQRN 153 (267)
Q Consensus 105 LlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~G---kIDQ~~ 153 (267)
|+.+-..+..+||.+|++.++++ ...|-.-+-+....|+|.+ .+|...
T Consensus 8 il~~L~~~~~~s~~~la~~lg~s-~~tv~~rl~~L~~~g~i~~~~a~~~~~~ 58 (162)
T 3i4p_A 8 ILRILQEDSTLAVADLAKKVGLS-TTPCWRRIQKMEEDGVIRRRVALLDPVK 58 (162)
T ss_dssp HHHHHTTCSCSCHHHHHHHHTCC-HHHHHHHHHHHHHTTSSCCCCCCCCTTT
T ss_pred HHHHHHHCCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeeeceeeeCHHH
Confidence 44444566778999999999998 8999999999999999884 566543
No 48
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=69.93 E-value=19 Score=27.03 Aligned_cols=44 Identities=7% Similarity=0.038 Sum_probs=37.7
Q ss_pred CCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCe
Q psy10889 111 ESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSS 155 (267)
Q Consensus 111 ~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~ 155 (267)
.+..++..+|++.++++ ...|-..|=.....|+|.-.-|...+.
T Consensus 49 ~~~~~t~~~la~~l~~s-~~~vs~~l~~L~~~glv~r~~~~~d~R 92 (146)
T 2fbh_A 49 HRDSPTQRELAQSVGVE-GPTLARLLDGLESQGLVRRLAVAEDRR 92 (146)
T ss_dssp CSSCCBHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEECCBTTBC
T ss_pred cCCCCCHHHHHHHhCCC-hhhHHHHHHHHHHCCCeeecCCCcccC
Confidence 45679999999999998 899999999999999999887765544
No 49
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=69.34 E-value=2.8 Score=33.08 Aligned_cols=37 Identities=14% Similarity=0.133 Sum_probs=32.3
Q ss_pred cCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEE
Q psy10889 110 LESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHG 147 (267)
Q Consensus 110 ~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~G 147 (267)
..+..+|+.+|++.++++ ...|-..+-.....|+|.+
T Consensus 17 ~~~~~~s~~ela~~lg~s-~~tv~~~l~~L~~~G~i~~ 53 (151)
T 2cyy_A 17 QNDGKAPLREISKITGLA-ESTIHERIRKLRESGVIKK 53 (151)
T ss_dssp HHCTTCCHHHHHHHHCSC-HHHHHHHHHHHHHHTSSCC
T ss_pred HHcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEE
Confidence 334679999999999998 8999999999999999976
No 50
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=69.12 E-value=23 Score=27.77 Aligned_cols=41 Identities=10% Similarity=0.122 Sum_probs=36.7
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCC
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNS 154 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~ 154 (267)
..++|.+|++.++|+ ...|=..|=.....|+|..+-++...
T Consensus 36 g~~~~~eLa~~lgis-~~tls~~L~~Le~~GlI~r~~~~~d~ 76 (146)
T 2f2e_A 36 GLTRFGEFQKSLGLA-KNILAARLRNLVEHGVMVAVPAESGS 76 (146)
T ss_dssp TCCSHHHHHHHHCCC-HHHHHHHHHHHHHTTSEEEEECSSSS
T ss_pred CCCCHHHHHHHhCCC-HHHHHHHHHHHHHCCCEEEEecCCCC
Confidence 578999999999998 88888888889999999999987765
No 51
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=68.55 E-value=5.3 Score=28.76 Aligned_cols=43 Identities=5% Similarity=-0.007 Sum_probs=36.2
Q ss_pred HHhhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccE
Q psy10889 103 LTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIH 146 (267)
Q Consensus 103 LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~ 146 (267)
..|+.+....+.++.++|++.|+++ ...|..-|-.....|+|.
T Consensus 5 ~~Il~~L~~~g~vsv~eLa~~l~VS-~~TIRrdL~~Le~~G~l~ 47 (78)
T 1xn7_A 5 IQVRDLLALRGRMEAAQISQTLNTP-QPMINAMLQQLESMGKAV 47 (78)
T ss_dssp HHHHHHHHHSCSBCHHHHHHHTTCC-HHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcC-HHHHHHHHHHHHHCCCEE
Confidence 3456666678899999999999998 899999999888888774
No 52
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=68.16 E-value=7.9 Score=26.57 Aligned_cols=46 Identities=11% Similarity=0.204 Sum_probs=36.2
Q ss_pred HHHhHHhhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEE
Q psy10889 99 KLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHG 147 (267)
Q Consensus 99 KLr~LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~G 147 (267)
+.+.|.++. .....++..+|++.|+++ ...|...|=..-..|+|..
T Consensus 12 ~~~IL~~L~--~~~~~~s~~eLA~~lgls-r~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 12 EQKILQVLS--DDGGPVAIFQLVKKCQVP-KKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp HHHHHHHHH--HHCSCEEHHHHHHHHCSC-HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHH--HcCCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCcEec
Confidence 344555553 334679999999999999 8999999988888999764
No 53
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=67.45 E-value=15 Score=29.10 Aligned_cols=46 Identities=11% Similarity=-0.006 Sum_probs=33.5
Q ss_pred CcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEE
Q psy10889 112 SKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLEL 158 (267)
Q Consensus 112 ~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V 158 (267)
+..++..+|++.++++ ...|=..|=.....|+|.-.-|...+....
T Consensus 66 ~~~~t~~eLa~~l~i~-~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~ 111 (166)
T 3deu_A 66 PPDQSQIQLAKAIGIE-QPSLVRTLDQLEDKGLISRQTCASDRRAKR 111 (166)
T ss_dssp CSSEEHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEEC--------CE
T ss_pred CCCCCHHHHHHHHCCC-HhhHHHHHHHHHHCCCEEeeCCCCCCCeeE
Confidence 4569999999999998 889999999999999999888766654433
No 54
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=67.37 E-value=13 Score=28.75 Aligned_cols=46 Identities=13% Similarity=0.076 Sum_probs=37.1
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEE
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELD 159 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~ 159 (267)
..++..+|++.++++ ...|=.+|=.....|+|.-.-|...+....-
T Consensus 63 ~~~t~~eLa~~l~~~-~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l 108 (159)
T 3s2w_A 63 DGINQESLSDYLKID-KGTTARAIQKLVDEGYVFRQRDEKDRRSYRV 108 (159)
T ss_dssp CSEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEECC---CCEEE
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEEecCCCCCCeeEE
Confidence 568999999999998 8999999999999999999887766654433
No 55
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=66.95 E-value=11 Score=28.95 Aligned_cols=44 Identities=0% Similarity=0.120 Sum_probs=32.3
Q ss_pred CCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEE--ecCCCCe
Q psy10889 111 ESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGK--LDQRNSS 155 (267)
Q Consensus 111 ~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~Gk--IDQ~~~~ 155 (267)
.+..++..+|++.++++ ...|=..|=.....|+|.-. -|+..+.
T Consensus 48 ~~~~~t~~eLa~~l~~~-~~~vs~~l~~Le~~Glv~r~~~~~~~D~R 93 (151)
T 3kp7_A 48 SIEALTVGQITEKQGVN-KAAVSRRVKKLLNAELVKLEKPDSNTDQR 93 (151)
T ss_dssp HHSCBCHHHHHHHHCSC-SSHHHHHHHHHHHTTSEEC----------
T ss_pred HcCCcCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEeeCCCCCCCCC
Confidence 34679999999999998 88999999999999999963 3554443
No 56
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=66.60 E-value=16 Score=28.38 Aligned_cols=47 Identities=13% Similarity=0.073 Sum_probs=40.0
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEEe
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDF 160 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~~ 160 (267)
..++..+|++.++++ ...|=.+|=.....|+|.-.-|...+...+-+
T Consensus 59 ~~~t~~eLa~~l~~~-~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~ 105 (162)
T 3k0l_A 59 PNLSNAKLAERSFIK-PQSANKILQDLLANGWIEKAPDPTHGRRILVT 105 (162)
T ss_dssp TTCCHHHHHHHHTSC-GGGHHHHHHHHHHTTSEEEEECCSSSCCEEEE
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHHHHHHCcCeEecCCCCcCCeeEeE
Confidence 469999999999998 88999999999999999999987776544433
No 57
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=66.04 E-value=8.8 Score=30.37 Aligned_cols=48 Identities=8% Similarity=0.058 Sum_probs=37.5
Q ss_pred HHhHHhhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEe
Q psy10889 100 LQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKL 149 (267)
Q Consensus 100 Lr~LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkI 149 (267)
++.|..+... .++.++-.+|++.++|+ ..-|+.++-..-.+|+|...=
T Consensus 17 l~~L~~La~~-~~~~~~~~~iA~~~~i~-~~~l~kil~~L~~~Glv~s~r 64 (149)
T 1ylf_A 17 VHILSILKNN-PSSLCTSDYMAESVNTN-PVVIRKIMSYLKQAGFVYVNR 64 (149)
T ss_dssp HHHHHHHHHS-CGGGCCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEEC-
T ss_pred HHHHHHHHhC-CCCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCcEEEcc
Confidence 4444444332 45679999999999998 999999999999999998643
No 58
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=65.79 E-value=13 Score=28.47 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=32.0
Q ss_pred CcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCe
Q psy10889 112 SKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSS 155 (267)
Q Consensus 112 ~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~ 155 (267)
+..++..+|++.++++ ...|=..|=.....|+|.-.-|...+.
T Consensus 53 ~~~~~~~eLa~~l~~~-~~~vs~~l~~L~~~Glv~r~~~~~D~R 95 (149)
T 4hbl_A 53 ENPQTLNSIGRHLDLS-SNTLTPMLKRLEQSGWVKRERQQSDKR 95 (149)
T ss_dssp SSSEEHHHHHHHHTCC-HHHHHHHHHHHHHHTSEEC--------
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEeeCCCCCCcc
Confidence 3678999999999998 899999999999999999887765554
No 59
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=65.20 E-value=14 Score=27.57 Aligned_cols=44 Identities=9% Similarity=0.154 Sum_probs=37.1
Q ss_pred CcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeE
Q psy10889 112 SKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSL 156 (267)
Q Consensus 112 ~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v 156 (267)
+..++..+|++.++++ ...|-..|=.....|+|.-.-|..++..
T Consensus 45 ~~~~~~~ela~~l~~~-~~tvs~~l~~L~~~gli~r~~~~~d~r~ 88 (139)
T 3bja_A 45 SGKVSMSKLIENMGCV-PSNMTTMIQRMKRDGYVMTEKNPNDQRE 88 (139)
T ss_dssp SCSEEHHHHHHHCSSC-CTTHHHHHHHHHHTTSEEEEECSSCTTC
T ss_pred cCCcCHHHHHHHHCCC-hhHHHHHHHHHHHCCCeeeccCCCCCce
Confidence 4469999999999998 8899999989999999998877655443
No 60
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=64.90 E-value=5.9 Score=29.28 Aligned_cols=45 Identities=4% Similarity=-0.020 Sum_probs=37.9
Q ss_pred HHhhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEE
Q psy10889 103 LTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGK 148 (267)
Q Consensus 103 LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~Gk 148 (267)
..|+.+....+.++.++|++.|+|+ ...|..-|-.....|+|.=.
T Consensus 5 ~~Il~~L~~~g~vsv~eLA~~l~VS-~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 5 MEVRDMLALQGRMEAKQLSARLQTP-QPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHTTCC-HHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEE
Confidence 3456666678899999999999998 89999999999999988654
No 61
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=62.38 E-value=40 Score=26.41 Aligned_cols=60 Identities=15% Similarity=0.108 Sum_probs=46.2
Q ss_pred CcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEE--EecCCCCeEEEEeecCCCCCCCcHHHHHHHHHHHH
Q psy10889 112 SKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHG--KLDQRNSSLELDFAIGRDINPGDVTNMITEFQAWS 182 (267)
Q Consensus 112 ~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~G--kIDQ~~~~v~V~~~~~Rd~~~~q~~~L~~~L~~W~ 182 (267)
..-.+.++||+.++++ ..+|...|=..+..|+|.= +.|...+....- ++.-+.++|..+.
T Consensus 49 ~~~ps~~~LA~~~~~s-~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~y----------dL~pL~ekL~~~~ 110 (135)
T 2v79_A 49 SYFPTPNQLQEGMSIS-VEECTNRLRMFIQKGFLFIEECEDQNGIKFEKY----------SLQPLWGKLYEYI 110 (135)
T ss_dssp CCSCCHHHHHTTSSSC-HHHHHHHHHHHHHHTSCEEEEEECTTCCEEEEE----------ECHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEEeEecCCCceEEEe----------eHHHHHHHHHHHH
Confidence 4668999999999998 9999999999999999997 556655544443 3344667666554
No 62
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=62.28 E-value=46 Score=24.76 Aligned_cols=46 Identities=11% Similarity=0.059 Sum_probs=38.1
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCC-eEEEE
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNS-SLELD 159 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~-~v~V~ 159 (267)
..++..+|++.++++ ...|=..|=.....|+|.-.-|+.++ .+.+.
T Consensus 40 ~~~t~~ela~~l~~~-~stvs~~l~~L~~~G~v~r~~~~~d~r~~~~~ 86 (152)
T 1ku9_A 40 KPLTISDIMEELKIS-KGNVSMSLKKLEELGFVRKVWIKGERKNYYEA 86 (152)
T ss_dssp SCEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEECCTTCSSCEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEEecCCCceEEEee
Confidence 469999999999998 88999999999999999988776654 34443
No 63
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=62.08 E-value=25 Score=26.98 Aligned_cols=42 Identities=5% Similarity=0.078 Sum_probs=36.2
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCe
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSS 155 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~ 155 (267)
..++..+|++.++++ ...|=..|=.....|+|.-.-|..++.
T Consensus 57 ~~~t~~ela~~l~is-~~tvs~~l~~Le~~Gli~r~~~~~d~R 98 (154)
T 2eth_A 57 GPKKMKEIAEFLSTT-KSNVTNVVDSLEKRGLVVREMDPVDRR 98 (154)
T ss_dssp CCBCHHHHHHHTTSC-HHHHHHHHHHHHHTTSEEEEECTTTSS
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEeeCCCCCcc
Confidence 369999999999998 889999999999999999887765543
No 64
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=61.85 E-value=24 Score=25.19 Aligned_cols=39 Identities=10% Similarity=0.158 Sum_probs=34.0
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCC
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQR 152 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~ 152 (267)
...++.+|++.++++ ...|-.-+=.....|+|..+-+..
T Consensus 35 ~~~~~~ela~~l~is-~~tvs~~L~~L~~~Glv~~~~~g~ 73 (98)
T 3jth_A 35 QELSVGELCAKLQLS-QSALSQHLAWLRRDGLVTTRKEAQ 73 (98)
T ss_dssp SCEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEECCTT
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEEEEeCC
Confidence 689999999999998 888988888889999999875544
No 65
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=61.39 E-value=13 Score=29.22 Aligned_cols=34 Identities=9% Similarity=0.120 Sum_probs=31.2
Q ss_pred CHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEec
Q psy10889 116 PYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLD 150 (267)
Q Consensus 116 sY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkID 150 (267)
+-++|++.++|| ..-|+.++-..-.+|||...=.
T Consensus 25 s~~~IA~~~~i~-~~~l~kIl~~L~~aGlv~s~rG 58 (145)
T 1xd7_A 25 SSEIIADSVNTN-PVVVRRMISLLKKADILTSRAG 58 (145)
T ss_dssp CHHHHHHHHTSC-HHHHHHHHHHHHHTTSEECCSS
T ss_pred CHHHHHHHHCcC-HHHHHHHHHHHHHCCceEeecC
Confidence 999999999999 9999999999999999986543
No 66
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=61.36 E-value=68 Score=26.41 Aligned_cols=35 Identities=14% Similarity=0.099 Sum_probs=32.1
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEE
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGK 148 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~Gk 148 (267)
..+++.+|++.++++ ...|-.-|-.....|+|.+.
T Consensus 32 ~~~s~~eLA~~lglS-~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 32 KEMTISQLSEILGKT-PQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEE
Confidence 469999999999998 88999998889999999987
No 67
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=61.26 E-value=17 Score=25.33 Aligned_cols=36 Identities=3% Similarity=0.003 Sum_probs=31.8
Q ss_pred CcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEE
Q psy10889 112 SKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGK 148 (267)
Q Consensus 112 ~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~Gk 148 (267)
...++..+|++.++++ ...|-..|-.....|+|...
T Consensus 12 ~~~~s~~eLa~~lgvs-~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 12 HNGGKTAEIAEALAVT-DYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp SCCCCHHHHHHHHTSC-HHHHHHHHHHHHHHTSEEEE
T ss_pred cCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEe
Confidence 3569999999999998 89999999999999999853
No 68
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=60.94 E-value=14 Score=29.88 Aligned_cols=47 Identities=6% Similarity=0.156 Sum_probs=37.4
Q ss_pred HHhHHhhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEE
Q psy10889 100 LQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGK 148 (267)
Q Consensus 100 Lr~LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~Gk 148 (267)
+|.|..+... .+..++-.+|++.++|+ ..-|+.++-..-.+|+|...
T Consensus 15 lr~l~~La~~-~~~~~s~~~IA~~~~is-~~~l~kil~~L~~aGlv~s~ 61 (162)
T 3k69_A 15 VHSILYLDAH-RDSKVASRELAQSLHLN-PVMIRNILSVLHKHGYLTGT 61 (162)
T ss_dssp HHHHHHHHTT-TTSCBCHHHHHHHHTSC-GGGTHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHhC-CCCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEee
Confidence 4444444332 35679999999999998 99999999999999999765
No 69
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=60.73 E-value=26 Score=26.11 Aligned_cols=45 Identities=11% Similarity=0.152 Sum_probs=37.2
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEE
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLEL 158 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V 158 (267)
..++..+|++.++++ ...|-..|=.....|+|.-.-|..++....
T Consensus 46 ~~~t~~ela~~l~~~-~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~ 90 (139)
T 3eco_A 46 DGLTQNDIAKALQRT-GPTVSNLLRNLERKKLIYRYVDAQDTRRKN 90 (139)
T ss_dssp TCEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEECCC--CCEE
T ss_pred CCcCHHHHHHHhCCC-cccHHHHHHHHHHCCCEeecCCCCCCCeee
Confidence 579999999999998 889999999999999999888776654433
No 70
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=60.02 E-value=41 Score=25.07 Aligned_cols=45 Identities=9% Similarity=-0.006 Sum_probs=38.5
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEE
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLEL 158 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V 158 (267)
..++..+|++.++++ ...|-..|=.....|+|.-.-|..++....
T Consensus 46 ~~~~~~~la~~l~~s-~~tvs~~l~~L~~~glv~r~~~~~d~r~~~ 90 (145)
T 2a61_A 46 GPKRPGELSVLLGVA-KSTVTGLVKRLEADGYLTRTPDPADRRAYF 90 (145)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred CCCCHHHHHHHHCCC-chhHHHHHHHHHHCCCeeecCCCCCCceEE
Confidence 469999999999998 889999999999999999988876665443
No 71
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=58.90 E-value=21 Score=27.06 Aligned_cols=43 Identities=9% Similarity=0.157 Sum_probs=35.4
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeE
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSL 156 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v 156 (267)
..++..+|++.++++ ...|-..|=.....|+|.-.-|..++..
T Consensus 55 ~~~t~~ela~~l~~~-~~tvs~~l~~Le~~Glv~r~~~~~d~R~ 97 (150)
T 2rdp_A 55 GDLTVGELSNKMYLA-CSTTTDLVDRMERNGLVARVRDEHDRRV 97 (150)
T ss_dssp CSBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEECCC---C
T ss_pred CCCCHHHHHHHHCCC-chhHHHHHHHHHHCCCeeecCCCCCcce
Confidence 469999999999998 8999999999999999998877655543
No 72
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=58.51 E-value=13 Score=28.21 Aligned_cols=41 Identities=7% Similarity=-0.004 Sum_probs=31.4
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCC
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNS 154 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~ 154 (267)
..++..+|++.++++ ...|=..|=.....|+|.-.-|..++
T Consensus 53 ~~~t~~ela~~l~~~-~~tvs~~l~~Le~~Glv~r~~~~~D~ 93 (148)
T 3nrv_A 53 SDCSVQKISDILGLD-KAAVSRTVKKLEEKKYIEVNGHSEDK 93 (148)
T ss_dssp SSBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEC-------
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEeecCCCCc
Confidence 489999999999998 88999999999999999987665544
No 73
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=58.37 E-value=42 Score=24.82 Aligned_cols=45 Identities=7% Similarity=-0.009 Sum_probs=38.2
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEE
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLEL 158 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V 158 (267)
..++..+|++.++++ ...|-..|=.....|+|.-.-|..++....
T Consensus 49 ~~~t~~ela~~l~~s-~~~vs~~l~~Le~~glv~r~~~~~d~R~~~ 93 (142)
T 2fbi_A 49 GEMESYQLANQACIL-RPSMTGVLARLERDGIVRRWKAPKDQRRVY 93 (142)
T ss_dssp CSEEHHHHHHHTTCC-HHHHHHHHHHHHHTTSEEEEEETTEEEEEE
T ss_pred CCCCHHHHHHHHCCC-HhHHHHHHHHHHHCCCEEeecCCCCCCeeE
Confidence 359999999999998 899999999999999999888876655433
No 74
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=57.58 E-value=25 Score=26.77 Aligned_cols=42 Identities=2% Similarity=0.116 Sum_probs=36.4
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCe
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSS 155 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~ 155 (267)
..++..+|++.++++ ...|-..|=.....|+|.-.-|...+.
T Consensus 50 ~~~t~~ela~~l~~s-~~tvs~~l~~Le~~glv~r~~~~~d~R 91 (155)
T 1s3j_A 50 GSLKVSEIAERMEVK-PSAVTLMADRLEQKNLIARTHNTKDRR 91 (155)
T ss_dssp SEEEHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEEEECSSCTT
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEeecCCCCCCc
Confidence 468999999999998 899999999999999999887765443
No 75
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=56.57 E-value=13 Score=29.06 Aligned_cols=37 Identities=11% Similarity=0.157 Sum_probs=32.5
Q ss_pred CCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEE
Q psy10889 111 ESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGK 148 (267)
Q Consensus 111 ~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~Gk 148 (267)
.+..+++.+|++.++++ ...|-..|-.....|+|.+.
T Consensus 18 ~~~~~s~~ela~~lg~s-~~tv~~~l~~L~~~G~i~~~ 54 (150)
T 2w25_A 18 ADGRATLSELATRAGLS-VSAVQSRVRRLESRGVVQGY 54 (150)
T ss_dssp HCTTCCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEEE
T ss_pred HcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEE
Confidence 34579999999999998 89999999999999999754
No 76
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=56.48 E-value=30 Score=26.57 Aligned_cols=59 Identities=8% Similarity=0.048 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHhHHhhhcccCC-cccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCC
Q psy10889 91 EMTQLQKKKLQNLTIVTLSLES-KCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQR 152 (267)
Q Consensus 91 ~L~~~~~~KLr~LtLlsLa~~~-k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~ 152 (267)
+|++.+.. -++.|......+ .-++.++|++.++++ ..+|-..|=..+..|+|.=+-+..
T Consensus 29 gLt~~e~~--vll~L~~~~~~~~~~ps~~~LA~~l~~s-~~~V~~~l~~Le~kGlI~~~~~~~ 88 (128)
T 2vn2_A 29 GLGEGELV--LLLHMQSFFEEGVLFPTPAELAERMTVS-AAECMEMVRRLLQKGMIAIEEHTD 88 (128)
T ss_dssp TCCHHHHH--HHHHHHHHHTTTCSSCCHHHHHHTSSSC-HHHHHHHHHHHHHTTSSEECC---
T ss_pred CCCHHHHH--HHHHHHHHHhcCCCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEEeEEC
Confidence 45554432 445555554433 448999999999998 999999999999999998766643
No 77
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=55.30 E-value=32 Score=26.47 Aligned_cols=43 Identities=9% Similarity=0.088 Sum_probs=35.3
Q ss_pred CcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCe
Q psy10889 112 SKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSS 155 (267)
Q Consensus 112 ~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~ 155 (267)
+..++..+|++.++++ ...|-..|=.....|+|.-.-|...+.
T Consensus 64 ~~~~t~~ela~~l~is-~~tvs~~l~~Le~~Gli~r~~~~~d~R 106 (162)
T 3cjn_A 64 KDGLPIGTLGIFAVVE-QSTLSRALDGLQADGLVRREVDSDDQR 106 (162)
T ss_dssp SCSEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEEC--CCS
T ss_pred CCCCCHHHHHHHHCCC-hhHHHHHHHHHHHCCCEEecCCCCCCC
Confidence 3468999999999998 889999999999999999887664443
No 78
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=54.35 E-value=19 Score=25.73 Aligned_cols=36 Identities=11% Similarity=0.116 Sum_probs=31.4
Q ss_pred cCCcccCHHHHHHHhCCCChhh-HHHHHHHHHhcCccE
Q psy10889 110 LESKCIPYDKLLKELDISNVRD-LEDLIIEAIYSDIIH 146 (267)
Q Consensus 110 ~~~k~IsY~~I~~~L~I~~~~e-vE~lvI~aI~~gLI~ 146 (267)
..+..++..+|++.++++ ... |=..|=.....|+|.
T Consensus 26 ~~~~~~t~~eLa~~l~is-~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 26 KKGYEPSLAEIVKASGVS-EKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp HTTCCCCHHHHHHHHCCC-HHHHHTTHHHHHHHTTSEE
T ss_pred hcCCCCCHHHHHHHHCCC-chHHHHHHHHHHHHCCCee
Confidence 344479999999999998 888 888888999999999
No 79
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=54.10 E-value=10 Score=27.13 Aligned_cols=35 Identities=3% Similarity=0.040 Sum_probs=30.6
Q ss_pred CcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEE
Q psy10889 112 SKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHG 147 (267)
Q Consensus 112 ~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~G 147 (267)
+..++..+|+++|+|+ ...|..-|-..-..|+|.=
T Consensus 22 g~~psv~EIa~~lgvS-~~TVrr~L~~Le~kG~I~R 56 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLS-IYQVRLYLEQLHDVGVLEK 56 (77)
T ss_dssp TSCEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEE
T ss_pred CCCcCHHHHHHHHCCC-HHHHHHHHHHHHHCCcEEe
Confidence 4789999999999996 8889999999888998853
No 80
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=54.00 E-value=18 Score=27.31 Aligned_cols=42 Identities=5% Similarity=0.082 Sum_probs=34.2
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCe
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSS 155 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~ 155 (267)
..++..+|++.++++ ...|=..|=.....|+|.-.-|...+.
T Consensus 50 ~~~t~~eLa~~l~~~-~~~vs~~l~~L~~~Glv~r~~~~~D~R 91 (143)
T 3oop_A 50 EPISQKEIALWTKKD-TPTVNRIVDVLLRKELIVREISTEDRR 91 (143)
T ss_dssp SSEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEC----CC
T ss_pred CCcCHHHHHHHHCCC-HhhHHHHHHHHHHCCCeeccCCCccCc
Confidence 678999999999998 899999999999999999887665543
No 81
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=53.65 E-value=35 Score=25.75 Aligned_cols=41 Identities=10% Similarity=0.153 Sum_probs=35.8
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCC
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNS 154 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~ 154 (267)
..++..+|++.++++ ...|-..|=.....|+|.-.-|...+
T Consensus 53 ~~~t~~ela~~l~~~-~~~vs~~l~~Le~~Glv~r~~~~~d~ 93 (152)
T 3bj6_A 53 PGATAPQLGAALQMK-RQYISRILQEVQRAGLIERRTNPEHA 93 (152)
T ss_dssp TTEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEECCSSST
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCeeecCCcccc
Confidence 468999999999998 89999999999999999988776444
No 82
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=52.73 E-value=36 Score=25.53 Aligned_cols=43 Identities=12% Similarity=0.279 Sum_probs=31.0
Q ss_pred cCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEE
Q psy10889 115 IPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLEL 158 (267)
Q Consensus 115 IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V 158 (267)
++..+|++.++++ ...|=..|=.....|+|.-.-|+.++....
T Consensus 52 ~t~~eLa~~l~~s-~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~ 94 (146)
T 3tgn_A 52 LTNSELARRLNVS-QAAVTKAIKSLVKEGMLETSKDSKDARVIF 94 (146)
T ss_dssp CCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEC----------C
T ss_pred CCHHHHHHHHCCC-HHHHHHHHHHHHHCCCeEeccCCCCCceeE
Confidence 9999999999998 899999999999999999888766655433
No 83
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=52.34 E-value=34 Score=25.28 Aligned_cols=44 Identities=9% Similarity=0.091 Sum_probs=37.7
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEE
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLE 157 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~ 157 (267)
..++..+|++.++++ ...|-..|=.....|+|.-.-|...+...
T Consensus 51 ~~~t~~ela~~l~~~-~~tvs~~l~~L~~~glv~r~~~~~d~R~~ 94 (140)
T 2nnn_A 51 GPCPQNQLGRLTAMD-AATIKGVVERLDKRGLIQRSADPDDGRRL 94 (140)
T ss_dssp SSBCHHHHHHHTTCC-HHHHHHHHHHHHHTTCEEEEEETTEEEEE
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEeeCCCCCCCee
Confidence 379999999999998 89999999999999999988777655443
No 84
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=51.82 E-value=72 Score=24.67 Aligned_cols=49 Identities=10% Similarity=-0.015 Sum_probs=38.6
Q ss_pred CcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEEee
Q psy10889 112 SKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFA 161 (267)
Q Consensus 112 ~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~~~ 161 (267)
+..++..+|++.++++ ...|=.+|=.....|+|.-.-|...+....-+.
T Consensus 60 ~~~~t~~eLa~~l~~~-~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~L 108 (168)
T 3u2r_A 60 PEGMATLQIADRLISR-APDITRLIDRLDDRGLVLRTRKPENRRVVEVAL 108 (168)
T ss_dssp TSCEEHHHHHHHC----CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEE
T ss_pred CCCcCHHHHHHHHCCC-hhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEE
Confidence 4679999999999998 788999999999999999999887776554443
No 85
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=50.95 E-value=59 Score=24.62 Aligned_cols=42 Identities=7% Similarity=0.101 Sum_probs=33.3
Q ss_pred CcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCC
Q psy10889 112 SKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNS 154 (267)
Q Consensus 112 ~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~ 154 (267)
...++..+|++.++++ ...|-..|=.....|+|.-.-|...+
T Consensus 55 ~~~~t~~ela~~l~i~-~~tvs~~l~~Le~~Glv~r~~~~~d~ 96 (155)
T 3cdh_A 55 NDAMMITRLAKLSLME-QSRMTRIVDQMDARGLVTRVADAKDK 96 (155)
T ss_dssp CSCBCHHHHHHHTTCC-HHHHHHHHHHHHHTTSEEECC-----
T ss_pred CCCcCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEeccCCCcC
Confidence 4579999999999998 88999999999999999977665443
No 86
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=50.87 E-value=18 Score=27.84 Aligned_cols=44 Identities=11% Similarity=0.228 Sum_probs=32.7
Q ss_pred CCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCe
Q psy10889 111 ESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSS 155 (267)
Q Consensus 111 ~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~ 155 (267)
.+..++..+|++.++++ ...|=.+|=.....|+|.-.-|...+.
T Consensus 59 ~~~~~~~~ela~~l~i~-~~tvs~~l~~Le~~Gli~r~~~~~d~R 102 (160)
T 3boq_A 59 NPDGLSMGKLSGALKVT-NGNVSGLVNRLIKDGMVVKAMSADDRR 102 (160)
T ss_dssp CTTCEEHHHHHHHCSSC-CSCHHHHHHHHHHHTSEEEC-------
T ss_pred cCCCCCHHHHHHHHCCC-hhhHHHHHHHHHHCCCEEeecCCCCCC
Confidence 34579999999999998 788888888999999999877665443
No 87
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=50.81 E-value=51 Score=24.64 Aligned_cols=43 Identities=14% Similarity=0.146 Sum_probs=33.7
Q ss_pred CcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCe
Q psy10889 112 SKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSS 155 (267)
Q Consensus 112 ~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~ 155 (267)
+..++..+|++.++++ ...|=..|=.....|+|.-.-|..++.
T Consensus 48 ~~~~~~~~la~~l~i~-~~~vs~~l~~Le~~glv~r~~~~~d~R 90 (147)
T 2hr3_A 48 GGDVTPSELAAAERMR-SSNLAALLRELERGGLIVRHADPQDGR 90 (147)
T ss_dssp TSCBCHHHHHHHTTCC-HHHHHHHHHHHHHTTSEEEEC------
T ss_pred CCCCCHHHHHHHhCCC-hhhHHHHHHHHHHCCCEeeCCCCCCCC
Confidence 4579999999999998 889999999999999999887765443
No 88
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=50.42 E-value=46 Score=23.85 Aligned_cols=39 Identities=13% Similarity=0.110 Sum_probs=33.6
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCC
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQR 152 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~ 152 (267)
...++.+|++.++++ ...|-.-+=.....|+|..+-+..
T Consensus 35 ~~~~~~ela~~l~is-~~tvs~~L~~L~~~Glv~~~~~g~ 73 (102)
T 3pqk_A 35 GEFSVGELEQQIGIG-QPTLSQQLGVLRESGIVETRRNIK 73 (102)
T ss_dssp CCBCHHHHHHHHTCC-TTHHHHHHHHHHHTTSEEEECSSS
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEEEEeCC
Confidence 458999999999998 788888888888999999876554
No 89
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=50.40 E-value=56 Score=25.79 Aligned_cols=99 Identities=8% Similarity=0.068 Sum_probs=53.7
Q ss_pred ccCHHHHHHHhCCCChhhHHHHHHHHHhcCccE-EEecCCCCeEEEEeecCCCCCCCcHH----------------HHHH
Q psy10889 114 CIPYDKLLKELDISNVRDLEDLIIEAIYSDIIH-GKLDQRNSSLELDFAIGRDINPGDVT----------------NMIT 176 (267)
Q Consensus 114 ~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~-GkIDQ~~~~v~V~~~~~Rd~~~~q~~----------------~L~~ 176 (267)
.++..++++.++|+ .+.|-.| -..|||. ..-+..+. |.++.+++. .+..
T Consensus 16 ~~~I~evA~~~gvs-~~tLR~Y----e~~Gll~p~~r~~~g~---------R~Y~~~dl~~l~~I~~lr~~G~sL~eIk~ 81 (148)
T 3gpv_A 16 YYTIGQVAKMQHLT-ISQIRYY----DKQGLFPFLQRNEKGD---------RIFNEEALKYLEMILCLKNTGMPIQKIKQ 81 (148)
T ss_dssp CBCHHHHHHHTTCC-HHHHHHH----HHTTCCTTCEECTTCC---------EEBCHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred ceeHHHHHHHHCcC-HHHHHHH----HHCCCCCCCcCCCCCC---------eecCHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 57899999999998 7777766 3468885 45554432 333333332 2222
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhcc
Q psy10889 177 EFQAWS---DSCANVLKAIETQIGKANSEKHQHLAHSNAIDMEILNIKKSLKN 226 (267)
Q Consensus 177 ~L~~W~---~~~~~vl~~ie~~i~~a~~~~~~~~~~~~~~~~~~~~~k~~~~~ 226 (267)
-|..|. ..+..+...++++......+.++-.+..+.++..++..+..+..
T Consensus 82 ~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~ 134 (148)
T 3gpv_A 82 FIDWSMEGDSTILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISS 134 (148)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 233222 13455556666666666655555555555666666655555443
No 90
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=49.49 E-value=23 Score=26.73 Aligned_cols=38 Identities=3% Similarity=0.066 Sum_probs=32.1
Q ss_pred CcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEec
Q psy10889 112 SKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLD 150 (267)
Q Consensus 112 ~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkID 150 (267)
...+++.+|++.|+++ ...|-..|=.....|+|...=+
T Consensus 54 ~~~~s~~eLa~~l~is-~stvs~~L~~L~~~Glv~~~~~ 91 (122)
T 1u2w_A 54 DEELCVCDIANILGVT-IANASHHLRTLYKQGVVNFRKE 91 (122)
T ss_dssp SSCEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEC--
T ss_pred CCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEEEEE
Confidence 4568999999999998 8899999888889999987543
No 91
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=49.40 E-value=37 Score=25.19 Aligned_cols=45 Identities=16% Similarity=0.209 Sum_probs=38.1
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEE
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLEL 158 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V 158 (267)
..++..+|++.++++ ...|-..|=.....|+|.-.-|..++....
T Consensus 47 ~~~~~~~la~~l~~~-~~tvs~~l~~L~~~gli~r~~~~~d~R~~~ 91 (138)
T 1jgs_A 47 ACITPVELKKVLSVD-LGALTRMLDRLVCKGWVERLPNPNDKRGVL 91 (138)
T ss_dssp SSBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEECTTCSSCEE
T ss_pred CCCCHHHHHHHHCCC-hHHHHHHHHHHHHCCCEEecCCcccCceeE
Confidence 468999999999998 899999999999999999988876655433
No 92
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=48.89 E-value=67 Score=23.70 Aligned_cols=42 Identities=14% Similarity=0.132 Sum_probs=36.5
Q ss_pred ccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeE
Q psy10889 114 CIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSL 156 (267)
Q Consensus 114 ~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v 156 (267)
.++..+|++.++++ ...|-..|=.....|+|.-.-|...+..
T Consensus 50 ~~~~~ela~~l~~~-~~tvs~~l~~Le~~Gli~r~~~~~d~R~ 91 (141)
T 3bro_A 50 EVLQRDLESEFSIK-SSTATVLLQRMEIKKLLYRKVSGKDSRQ 91 (141)
T ss_dssp CCBHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEECSSCTTS
T ss_pred CcCHHHHHHHHCCC-cchHHHHHHHHHHCCCEEeeCCCcCCCe
Confidence 79999999999998 8899999999999999998877655533
No 93
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=47.67 E-value=48 Score=25.84 Aligned_cols=45 Identities=11% Similarity=0.050 Sum_probs=38.0
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEE
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLEL 158 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V 158 (267)
..++..+|++.++++ ...|=..|=.....|+|.-.-|..++....
T Consensus 58 ~~~t~~eLa~~l~is-~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~ 102 (168)
T 2nyx_A 58 GPINLATLATLLGVQ-PSATGRMVDRLVGAELIDRLPHPTSRRELL 102 (168)
T ss_dssp CSEEHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEEEECSSCSSCEE
T ss_pred CCCCHHHHHHHhCCC-HHHHHHHHHHHHHCCCEEeccCCCCCCeeE
Confidence 469999999999998 889999998999999999988876654433
No 94
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=47.21 E-value=32 Score=28.03 Aligned_cols=50 Identities=16% Similarity=0.058 Sum_probs=36.1
Q ss_pred HHHHHhHHhhhccc-CCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCc-cEE
Q psy10889 97 KKKLQNLTIVTLSL-ESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDI-IHG 147 (267)
Q Consensus 97 ~~KLr~LtLlsLa~-~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gL-I~G 147 (267)
...-|.+.|+.+-. ..+.++..+|++.|+|+ .+.|-.-|-..-..|+ |.+
T Consensus 18 ~~~~R~~~Il~~L~~~~~~~s~~eLa~~l~vS-~~Ti~rdi~~L~~~G~~I~~ 69 (187)
T 1j5y_A 18 VRQERLKSIVRILERSKEPVSGAQLAEELSVS-RQVIVQDIAYLRSLGYNIVA 69 (187)
T ss_dssp HHHHHHHHHHHHHHHCSSCBCHHHHHHHHTSC-HHHHHHHHHHHHHHTCCCEE
T ss_pred hHHHHHHHHHHHHHHcCCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEEE
Confidence 34456666666554 45679999999999998 7777776665556788 764
No 95
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=47.21 E-value=14 Score=34.02 Aligned_cols=72 Identities=18% Similarity=0.147 Sum_probs=39.9
Q ss_pred CCHhHHHhhhhhccCchhHHHHHHHHHhHHhhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEE
Q psy10889 75 GTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHG 147 (267)
Q Consensus 75 Gt~~dy~~~~~~~~~p~L~~~~~~KLr~LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~G 147 (267)
|||.-|-+......-..-+...++......|+.+...+..+|..+|++.++++ ...|-.+|=+.+..|+|..
T Consensus 14 ~~~~~~~~~~~m~~~~~~~~~~~r~~n~~~il~~l~~~~~~sr~ela~~~gls-~~tv~~~v~~L~~~gli~~ 85 (429)
T 1z05_A 14 GTENLYFQSNAMYMAQPGHIDHIKQINAGRVYKLIDQKGPISRIDLSKESELA-PASITKITRELIDAHLIHE 85 (429)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHHCSBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEE
T ss_pred CccceeeehhhhhcccCCCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEe
Confidence 66666655432111000112223333334455555556789999999999998 8999999999999999975
No 96
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=45.72 E-value=48 Score=26.22 Aligned_cols=40 Identities=10% Similarity=0.053 Sum_probs=34.0
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCC
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRN 153 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~ 153 (267)
...+..+|++.|+++ ...|=.-|-.....|||..+-+...
T Consensus 70 ~~~t~~eLa~~lgls-~stvs~hL~~L~~aGlV~~~~~Gr~ 109 (151)
T 3f6v_A 70 GEQTVNNLAAHFPAS-RSAISQHLRVLTEAGLVTPRKDGRF 109 (151)
T ss_dssp CCEEHHHHHTTSSSC-HHHHHHHHHHHHHTTSEEEEEETTE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEEecCCE
Confidence 568999999999998 8888888888899999998765443
No 97
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=45.33 E-value=32 Score=25.09 Aligned_cols=38 Identities=8% Similarity=0.106 Sum_probs=32.8
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecC
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQ 151 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ 151 (267)
..+++.+|++.++++ ...|-..|=.....|+|..+=+.
T Consensus 38 ~~~~~~ela~~l~is-~stvs~~L~~L~~~Glv~~~~~g 75 (106)
T 1r1u_A 38 SEASVGHISHQLNLS-QSNVSHQLKLLKSVHLVKAKRQG 75 (106)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEEET
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEEEEeC
Confidence 458999999999998 88899888888899999887543
No 98
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=45.00 E-value=76 Score=22.34 Aligned_cols=41 Identities=15% Similarity=0.124 Sum_probs=35.0
Q ss_pred CcccCHHHH----HHHhCCCChhhHHHHHHHHHhcCccEEEecCCC
Q psy10889 112 SKCIPYDKL----LKELDISNVRDLEDLIIEAIYSDIIHGKLDQRN 153 (267)
Q Consensus 112 ~k~IsY~~I----~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~ 153 (267)
...++..+| ++.++++ ...|=..|=.....|+|.-.-|...
T Consensus 20 ~~~~~~~el~~~la~~l~is-~~tvs~~l~~Le~~gli~r~~~~r~ 64 (99)
T 1tbx_A 20 NEGIATYDLYKKVNAEFPMS-TATFYDAKKFLIQEGFVKERQERGE 64 (99)
T ss_dssp CTTCBHHHHHHHHHTTSCCC-HHHHHHHHHHHHHTTSEEEEEETTE
T ss_pred cCCcCHHHHHHHHHHHcCCC-HHHHHHHHHHHHHCCCEEEEecCCc
Confidence 466899999 8999998 8889888888889999998888733
No 99
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=44.79 E-value=27 Score=26.78 Aligned_cols=42 Identities=2% Similarity=-0.004 Sum_probs=31.8
Q ss_pred CcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCC
Q psy10889 112 SKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNS 154 (267)
Q Consensus 112 ~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~ 154 (267)
+..++..+|++.++++ ...|-..|=.....|+|.-.-|...+
T Consensus 61 ~~~~t~~ela~~l~is-~~tvs~~l~~Le~~glv~r~~~~~d~ 102 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMD-KVAVSRAVARLLERGFIRRETHGDDR 102 (162)
T ss_dssp STTCCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEC-------
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEeeecCCCCC
Confidence 4579999999999998 88999999999999999977655443
No 100
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=44.58 E-value=35 Score=25.69 Aligned_cols=54 Identities=13% Similarity=0.149 Sum_probs=40.3
Q ss_pred hHHHHHHHHHhHHhhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEE
Q psy10889 92 MTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGK 148 (267)
Q Consensus 92 L~~~~~~KLr~LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~Gk 148 (267)
|++.+..=|+ .|..++..+..++..+|++.++++ ...|=..|-.....|+|.-.
T Consensus 11 lt~~~~~~L~--~l~~l~~~~~~~s~~ela~~l~is-~~tv~~~l~~Le~~Gli~r~ 64 (139)
T 2x4h_A 11 LSRREFSYLL--TIKRYNDSGEGAKINRIAKDLKIA-PSSVFEEVSHLEEKGLVKKK 64 (139)
T ss_dssp CCHHHHHHHH--HHHHHHTTTSCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEE
T ss_pred cCHHHHHHHH--HHHHHHhcCCCcCHHHHHHHhCCC-hHHHHHHHHHHHHCCCEEec
Confidence 4554444343 344445566789999999999998 88888888888889999853
No 101
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=43.77 E-value=35 Score=25.89 Aligned_cols=48 Identities=10% Similarity=0.141 Sum_probs=32.7
Q ss_pred cCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEE
Q psy10889 110 LESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLEL 158 (267)
Q Consensus 110 ~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V 158 (267)
.....++..+|++.++++ ...|=.+|=.....|+|.-.-|...+....
T Consensus 50 ~~~~~~t~~eLa~~l~i~-~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~ 97 (150)
T 3fm5_A 50 EQAEGVNQRGVAATMGLD-PSQIVGLVDELEERGLVVRTLDPSDRRNKL 97 (150)
T ss_dssp HSTTCCCSHHHHHHHTCC-HHHHHHHHHHHHTTTSEEC-----------
T ss_pred hCCCCcCHHHHHHHHCCC-HhHHHHHHHHHHHCCCEEeeCCccccchhe
Confidence 344569999999999998 889999999999999999887776655433
No 102
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=43.23 E-value=24 Score=23.55 Aligned_cols=28 Identities=11% Similarity=0.239 Sum_probs=24.5
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHHh
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAIY 141 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI~ 141 (267)
...||.+|++.++++ ...|...+-.|+.
T Consensus 24 ~g~s~~eIA~~lgis-~~tV~~~~~ra~~ 51 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVT-RERIRQIEAKALR 51 (68)
T ss_dssp SCCCHHHHHHHHTCC-HHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHH
Confidence 568999999999998 9999998887754
No 103
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=42.73 E-value=21 Score=27.73 Aligned_cols=42 Identities=2% Similarity=-0.022 Sum_probs=34.5
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCe
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSS 155 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~ 155 (267)
..++..+|++.++++ ...|=..|=.....|+|.-.-|...+.
T Consensus 66 ~~~t~~eLa~~l~~~-~~~vs~~l~~Le~~Glv~r~~~~~DrR 107 (161)
T 3e6m_A 66 GELTVGQLATLGVME-QSTTSRTVDQLVDEGLAARSISDADQR 107 (161)
T ss_dssp SEEEHHHHHHHTTCC-HHHHHHHHHHHHHTTSEEECC---CCC
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEeeCCcccCC
Confidence 478999999999998 889999999999999999887765554
No 104
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=42.22 E-value=38 Score=30.55 Aligned_cols=62 Identities=18% Similarity=0.282 Sum_probs=44.2
Q ss_pred CCHhHHHhhhhhccCchhHHH----HHHHHHhHHhhhcccC----CcccCHHHHHHHhCCCChhhHHHHH
Q psy10889 75 GTYQDYLKQKEELKLPEMTQL----QKKKLQNLTIVTLSLE----SKCIPYDKLLKELDISNVRDLEDLI 136 (267)
Q Consensus 75 Gt~~dy~~~~~~~~~p~L~~~----~~~KLr~LtLlsLa~~----~k~IsY~~I~~~L~I~~~~evE~lv 136 (267)
|+|..|-.....-..|-|... -...+|..+|-.++.. .+.+|.+.|++.|+.++.+|+++|+
T Consensus 177 gNY~rFFrL~~~~~~pyL~aclle~~~~~vR~~AL~~i~kay~~k~~~~pl~~L~~~L~Fds~ee~~~F~ 246 (316)
T 3t5v_A 177 NFYARFFQLMQSPSLPLLMGFFLQMHLTDIRFYALRALSHTLNKKHKPIPFIYLENMLLFNNRQEIIEFC 246 (316)
T ss_dssp CCHHHHHHHHTCTTSCHHHHHHHGGGHHHHHHHHHHHHHHHSCTTCCCEEHHHHHHHTTCSSHHHHHHHH
T ss_pred chHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCHHHHHHHhCCCCHHHHHHHH
Confidence 667666655431024555432 2667888887777643 3689999999999999899999998
No 105
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=41.44 E-value=54 Score=24.58 Aligned_cols=46 Identities=11% Similarity=0.098 Sum_probs=35.0
Q ss_pred CCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEE
Q psy10889 111 ESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLE 157 (267)
Q Consensus 111 ~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~ 157 (267)
.+..++..+|++.++++ ...|=.+|=.....|+|.-.-|+.++...
T Consensus 47 ~~~~~t~~eLa~~l~~~-~~tvs~~l~~L~~~Glv~r~~~~~D~R~~ 92 (140)
T 3hsr_A 47 NDEKLNIKKLGERVFLD-SGTLTPLLKKLEKKDYVVRTREEKDERNL 92 (140)
T ss_dssp TTCEEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEC-------C
T ss_pred HcCCcCHHHHHHHHCCC-hhhHHHHHHHHHHCCCeEecCCCCCccee
Confidence 35689999999999998 89999999999999999988877665443
No 106
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=39.58 E-value=48 Score=24.50 Aligned_cols=42 Identities=17% Similarity=0.021 Sum_probs=36.4
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCe
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSS 155 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~ 155 (267)
..++..+|++.++++ ...|-..|=.....|+|.-.-+..++.
T Consensus 44 ~~~~~~ela~~l~is-~~~vs~~l~~L~~~gli~~~~~~~d~r 85 (142)
T 3bdd_A 44 APLHQLALQERLQID-RAAVTRHLKLLEESGYIIRKRNPDNQR 85 (142)
T ss_dssp CSBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEECSSSTT
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEecCCCCCCC
Confidence 469999999999998 899999999999999999888765443
No 107
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=38.70 E-value=44 Score=23.74 Aligned_cols=36 Identities=14% Similarity=0.054 Sum_probs=31.6
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEe
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKL 149 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkI 149 (267)
..++..+|++.++++ ...|-..|-.....|+|.-.-
T Consensus 42 ~~~~~~eLa~~l~is-~~tv~~~L~~L~~~Glv~~~~ 77 (96)
T 1y0u_A 42 KGRSEEEIMQTLSLS-KKQLDYHLKVLEAGFCIERVG 77 (96)
T ss_dssp TTCCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEET
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEEC
Confidence 458999999999998 888999988999999998643
No 108
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=38.66 E-value=36 Score=22.97 Aligned_cols=27 Identities=4% Similarity=0.106 Sum_probs=23.2
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHH
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAI 140 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI 140 (267)
...||.+|++.++++ ...|...+-.|+
T Consensus 29 ~~~s~~eIA~~l~is-~~tV~~~~~ra~ 55 (73)
T 1ku3_A 29 REHTLEEVGAYFGVT-RERIRQIENKAL 55 (73)
T ss_dssp SCCCHHHHHHHHTCC-HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHHHHH
Confidence 568999999999998 888888877664
No 109
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=38.47 E-value=21 Score=24.94 Aligned_cols=40 Identities=18% Similarity=0.222 Sum_probs=28.6
Q ss_pred hhhcccCCcccCHHHHHHHhCC----CChhhHHHHHHHHHhcCc
Q psy10889 105 IVTLSLESKCIPYDKLLKELDI----SNVRDLEDLIIEAIYSDI 144 (267)
Q Consensus 105 LlsLa~~~k~IsY~~I~~~L~I----~~~~evE~lvI~aI~~gL 144 (267)
|+.++...+.|+|++|.+.|.- -+.+++|+++-..-..|+
T Consensus 14 Li~~gK~~G~lTy~EI~d~l~~~~~~ld~e~id~i~~~L~~~gI 57 (72)
T 2k6x_A 14 LISLGKKKGYITYEDIDKAFPPDFEGFDTNLIERIHEELEKHGI 57 (72)
T ss_dssp HHHHHHHHSSCBHHHHHHHCSCSCSSCCHHHHHHHHHHHHHTCC
T ss_pred HHHHHhHcCCccHHHHHHhCccccccCCHHHHHHHHHHHHHCCC
Confidence 4556666678999999999852 237888888766555554
No 110
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=38.03 E-value=69 Score=24.16 Aligned_cols=42 Identities=7% Similarity=0.073 Sum_probs=33.4
Q ss_pred CcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCC
Q psy10889 112 SKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNS 154 (267)
Q Consensus 112 ~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~ 154 (267)
+..++..+|++.++++ ...|-..|=.....|+|.-.-|...+
T Consensus 59 ~~~~t~~ela~~l~~s-~~tvs~~l~~Le~~glv~r~~~~~d~ 100 (153)
T 2pex_A 59 TDERSVSEIGERLYLD-SATLTPLLKRLQAAGLVTRTRAASDE 100 (153)
T ss_dssp SCSEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEC-----
T ss_pred CCCcCHHHHHHHhCCC-cccHHHHHHHHHHCCCEeecCCcccC
Confidence 3568999999999998 89999999999999999987765444
No 111
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=37.97 E-value=33 Score=25.75 Aligned_cols=43 Identities=7% Similarity=0.044 Sum_probs=28.8
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeE
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSL 156 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v 156 (267)
..++..+|++.++++ ...|=..|=.....|+|.-.-|..++..
T Consensus 50 ~~~t~~eLa~~l~~~-~~tvs~~l~~L~~~Glv~r~~~~~DrR~ 92 (142)
T 3ech_A 50 RGLNLQDLGRQMCRD-KALITRKIRELEGRNLVRRERNPSDQRS 92 (142)
T ss_dssp TTCCHHHHHHHHC----CHHHHHHHHHHHTTSEEC---------
T ss_pred CCcCHHHHHHHhCCC-HHHHHHHHHHHHHCCCEeeccCCCCCCe
Confidence 469999999999998 8899999999999999998887766544
No 112
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=37.83 E-value=26 Score=20.84 Aligned_cols=22 Identities=5% Similarity=0.141 Sum_probs=19.1
Q ss_pred cCHHHHHHHhCCCChhhHHHHHH
Q psy10889 115 IPYDKLLKELDISNVRDLEDLII 137 (267)
Q Consensus 115 IsY~~I~~~L~I~~~~evE~lvI 137 (267)
+++.+|++.|+|+ ...|..++-
T Consensus 22 ~s~~~IA~~lgis-~~Tv~~~~~ 43 (51)
T 1tc3_C 22 VSLHEMSRKISRS-RHCIRVYLK 43 (51)
T ss_dssp CCHHHHHHHHTCC-HHHHHHHHH
T ss_pred CCHHHHHHHHCcC-HHHHHHHHh
Confidence 6899999999998 888887764
No 113
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=37.51 E-value=59 Score=23.06 Aligned_cols=47 Identities=9% Similarity=0.084 Sum_probs=35.1
Q ss_pred CcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEE
Q psy10889 112 SKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELD 159 (267)
Q Consensus 112 ~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~ 159 (267)
+..++..+|++.++++ ...|=.+|=.....|+|.-.-|.....+.++
T Consensus 28 ~~~~t~~eLa~~l~i~-~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT 74 (95)
T 2qvo_A 28 GNDVYIQYIASKVNSP-HSYVWLIIKKFEEAKMVECELEGRTKIIRLT 74 (95)
T ss_dssp TCCEEHHHHHHHSSSC-HHHHHHHHHHHHHTTSEEEEEETTEEEEEEC
T ss_pred CCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCcCccCCCCCCeEEEEEC
Confidence 4459999999999998 8899999989999999944334333334443
No 114
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=37.09 E-value=1e+02 Score=24.12 Aligned_cols=28 Identities=7% Similarity=0.043 Sum_probs=21.5
Q ss_pred cCHHHHHHHhCCCChhhHHHHHHHHHhcCccEE
Q psy10889 115 IPYDKLLKELDISNVRDLEDLIIEAIYSDIIHG 147 (267)
Q Consensus 115 IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~G 147 (267)
++..++++.++|+ .+.|-.|- ..|||..
T Consensus 3 ~~I~e~A~~~gvs-~~tLR~Ye----~~GLl~p 30 (142)
T 3gp4_A 3 LNIKEASEKSGVS-ADTIRYYE----RIGLIPP 30 (142)
T ss_dssp BCHHHHHHHHTSC-HHHHHHHH----HHTSSCC
T ss_pred CcHHHHHHHHCcC-HHHHHHHH----HCCCCCC
Confidence 5778999999998 88877773 2477765
No 115
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=36.98 E-value=81 Score=23.47 Aligned_cols=43 Identities=5% Similarity=0.037 Sum_probs=37.2
Q ss_pred CHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEE
Q psy10889 116 PYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELD 159 (267)
Q Consensus 116 sY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~ 159 (267)
+..+|++.++++ ...|=..|=.....|+|.-.-|..++....-
T Consensus 52 ~~~~la~~l~~~-~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~ 94 (144)
T 3f3x_A 52 SMVYLANRYFVT-QSAITAAVDKLEAKGLVRRIRDSKDRRIVIV 94 (144)
T ss_dssp EHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEEETTEEEEEEE
T ss_pred CHHHHHHHHCCC-hhHHHHHHHHHHHCCCEEeccCCCCCceEEE
Confidence 999999999998 8899999889999999999988876654443
No 116
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=36.84 E-value=32 Score=24.46 Aligned_cols=27 Identities=11% Similarity=0.175 Sum_probs=23.0
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHH
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAI 140 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI 140 (267)
.-.+|.+|++.|+|+ ...|...+-.|+
T Consensus 52 ~g~s~~eIA~~lgis-~~tV~~~l~ra~ 78 (92)
T 3hug_A 52 RGWSTAQIATDLGIA-EGTVKSRLHYAV 78 (92)
T ss_dssp SCCCHHHHHHHHTSC-HHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcC-HHHHHHHHHHHH
Confidence 357999999999998 899988887764
No 117
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=35.44 E-value=93 Score=24.81 Aligned_cols=49 Identities=4% Similarity=0.027 Sum_probs=41.5
Q ss_pred CcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEEee
Q psy10889 112 SKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFA 161 (267)
Q Consensus 112 ~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~~~ 161 (267)
...++..+|++.++++ ...|=.+|=.....|+|.-.-|+..+....-+.
T Consensus 55 ~~~~t~~eLa~~l~is-~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~L 103 (189)
T 3nqo_A 55 EEETTLNNIARKMGTS-KQNINRLVANLEKNGYVDVIPSPHDKRAINVKV 103 (189)
T ss_dssp GGGCCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEE
T ss_pred CCCcCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEE
Confidence 4679999999999998 889999999999999999999887766544433
No 118
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=35.40 E-value=42 Score=23.66 Aligned_cols=29 Identities=7% Similarity=0.202 Sum_probs=24.8
Q ss_pred CcccCHHHHHHHhCCCChhhHHHHHHHHHh
Q psy10889 112 SKCIPYDKLLKELDISNVRDLEDLIIEAIY 141 (267)
Q Consensus 112 ~k~IsY~~I~~~L~I~~~~evE~lvI~aI~ 141 (267)
+...||.+|++.++|+ ...|...+-.|+.
T Consensus 36 ~~~~s~~EIA~~lgis-~~tV~~~~~ra~~ 64 (87)
T 1tty_A 36 GKPKTLEEVGQYFNVT-RERIRQIEVKALR 64 (87)
T ss_dssp SSCCCHHHHHHHHTCC-HHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHHHHHH
Confidence 3579999999999998 8999988887753
No 119
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=34.92 E-value=38 Score=22.14 Aligned_cols=26 Identities=12% Similarity=0.118 Sum_probs=22.1
Q ss_pred ccCHHHHHHHhCCCChhhHHHHHHHHH
Q psy10889 114 CIPYDKLLKELDISNVRDLEDLIIEAI 140 (267)
Q Consensus 114 ~IsY~~I~~~L~I~~~~evE~lvI~aI 140 (267)
-.||.+|++.++++ ...|...+-.|.
T Consensus 31 g~s~~eIA~~lgis-~~tv~~~~~ra~ 56 (70)
T 2o8x_A 31 GLSYADAAAVCGCP-VGTIRSRVARAR 56 (70)
T ss_dssp CCCHHHHHHHHTSC-HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHHHHH
Confidence 48999999999998 888888777664
No 120
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=34.66 E-value=37 Score=25.49 Aligned_cols=41 Identities=12% Similarity=0.195 Sum_probs=35.3
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCC
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNS 154 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~ 154 (267)
..++..+|++.++++ ...|-..|=.....|+|.-.-|..++
T Consensus 53 ~~~~~~~la~~l~~~-~~tvs~~l~~L~~~glv~r~~~~~d~ 93 (147)
T 1z91_A 53 ETLTVKKMGEQLYLD-SGTLTPMLKRMEQQGLITRKRSEEDE 93 (147)
T ss_dssp SEEEHHHHHHTTTCC-HHHHHHHHHHHHHHTSEECCBCSSCT
T ss_pred CCCCHHHHHHHHCCC-cCcHHHHHHHHHHCCCEEeccCCCCC
Confidence 378999999999998 89999999999999999987765433
No 121
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=33.55 E-value=42 Score=24.90 Aligned_cols=29 Identities=10% Similarity=0.241 Sum_probs=24.6
Q ss_pred CcccCHHHHHHHhCCCChhhHHHHHHHHHh
Q psy10889 112 SKCIPYDKLLKELDISNVRDLEDLIIEAIY 141 (267)
Q Consensus 112 ~k~IsY~~I~~~L~I~~~~evE~lvI~aI~ 141 (267)
....||.+|++.++|+ ...|...+-.|+.
T Consensus 37 ~e~~s~~EIA~~lgiS-~~tVr~~~~rAlk 65 (99)
T 3t72_q 37 NTDYTLEEVGKQFDVT-RERIRQIEAKALR 65 (99)
T ss_pred CCCCCHHHHHHHHCcC-HHHHHHHHHHHHH
Confidence 3679999999999998 8888888887743
No 122
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=33.03 E-value=64 Score=20.77 Aligned_cols=41 Identities=12% Similarity=0.184 Sum_probs=28.8
Q ss_pred HhHHhhhcccCCcccCHHHHHHHh-----CCCChhhHHHHHHHHHhcCcc
Q psy10889 101 QNLTIVTLSLESKCIPYDKLLKEL-----DISNVRDLEDLIIEAIYSDII 145 (267)
Q Consensus 101 r~LtLlsLa~~~k~IsY~~I~~~L-----~I~~~~evE~lvI~aI~~gLI 145 (267)
|...|..+...+..++-++|++.| +|+ ...|-.-+- ..|++
T Consensus 6 R~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs-~~Tv~R~L~---~lg~v 51 (64)
T 2p5k_A 6 RHIKIREIITSNEIETQDELVDMLKQDGYKVT-QATVSRDIK---ELHLV 51 (64)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCC-HHHHHHHHH---HHTCE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhCCCcC-HHHHHHHHH---HcCCE
Confidence 444445555556789999999999 997 766665554 34777
No 123
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=32.99 E-value=34 Score=25.94 Aligned_cols=41 Identities=7% Similarity=0.064 Sum_probs=33.5
Q ss_pred hcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEE
Q psy10889 107 TLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGK 148 (267)
Q Consensus 107 sLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~Gk 148 (267)
.+...+..++..+|++.++|+ ...|=..|-.....|+|.-.
T Consensus 15 ~l~~~~~~~~~~ela~~l~vs-~~tvs~~l~~Le~~Glv~r~ 55 (142)
T 1on2_A 15 MLIEEKGYARVSDIAEALAVH-PSSVTKMVQKLDKDEYLIYE 55 (142)
T ss_dssp HHHHHHSSCCHHHHHHHHTSC-HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhhcCCCCHHHHHHHhCCC-HHHHHHHHHHHHHCCCEEEe
Confidence 333344569999999999998 88888888888899999865
No 124
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=32.75 E-value=45 Score=24.94 Aligned_cols=45 Identities=11% Similarity=0.107 Sum_probs=38.0
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEE
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLEL 158 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V 158 (267)
..++-.+|++.++++ ...|=.+|=.....|+|.=.-|..++....
T Consensus 52 ~~~t~~eLa~~l~~~-~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~ 96 (127)
T 2frh_A 52 KEYYLKDIINHLNYK-QPQVVKAVKILSQEDYFDKKRNEHDERTVL 96 (127)
T ss_dssp SEEEHHHHHHHSSSH-HHHHHHHHHHHHHTTSSCCBCCSSSSCCCE
T ss_pred CCcCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEecCCCCCCCeeE
Confidence 679999999999998 888888888999999999877776654433
No 125
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=32.58 E-value=35 Score=25.90 Aligned_cols=42 Identities=19% Similarity=0.056 Sum_probs=34.7
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEE--EecCCCCe
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHG--KLDQRNSS 155 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~G--kIDQ~~~~ 155 (267)
..++..+|++.++++ ...|-..|=.....|+|.- .-|...+.
T Consensus 54 ~~~t~~eLa~~l~~~-~~tvs~~l~~Le~~Glv~r~~~~~~~d~R 97 (154)
T 2qww_A 54 PGISVADLTKRLIIT-GSSAAANVDGLISLGLVVKLNKTIPNDSM 97 (154)
T ss_dssp TTEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEESCC--CTTCT
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHHHHHHCCCEEecCcCCCCCCc
Confidence 469999999999998 8999999999999999998 66655543
No 126
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=32.19 E-value=39 Score=24.62 Aligned_cols=37 Identities=11% Similarity=0.176 Sum_probs=32.4
Q ss_pred CCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEE
Q psy10889 111 ESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGK 148 (267)
Q Consensus 111 ~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~Gk 148 (267)
.+..++-.+|++.++++ ...|-..+-.....|+|...
T Consensus 30 ~g~~~s~~eLa~~lgvs-~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 30 KGTEMTDEEIANQLNIK-VNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp HCSCBCHHHHHHTTTSC-HHHHHHHHHHHHHHTSCEEE
T ss_pred cCCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEE
Confidence 34458999999999998 88999999999999999865
No 127
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=31.58 E-value=1.3e+02 Score=22.57 Aligned_cols=37 Identities=5% Similarity=0.035 Sum_probs=32.4
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEec
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLD 150 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkID 150 (267)
...++.+|++.|+++ ...|-..|=.....|+|...-+
T Consensus 58 ~~~s~~ela~~lgis-~stvs~~L~~Le~~Glv~~~~~ 94 (122)
T 1r1t_A 58 SELCVGDLAQAIGVS-ESAVSHQLRSLRNLRLVSYRKQ 94 (122)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCeEEEEe
Confidence 568999999999998 8888888888888999988655
No 128
>2cwo_A P21, RNA silencing suppressor; octamer, ring, head-TO-head, tail-TO-tail, all alpha helical binding protein, RNA binding protein; 3.30A {Beet yellows virus}
Probab=30.82 E-value=9.8 Score=30.75 Aligned_cols=31 Identities=26% Similarity=0.222 Sum_probs=22.7
Q ss_pred CcccccccCCcchHHHHHhhcccchHHHHHH
Q psy10889 1 MVAEKASGVGTNPLEQFVLLAKTTKGAAAVE 31 (267)
Q Consensus 1 ~~~~~~~~~~~~~le~fl~lak~~k~~aa~~ 31 (267)
|-||-++-+-+.+|+.|+-++--++..++.+
T Consensus 117 mhketas~tlnafl~eycri~gl~redalre 147 (197)
T 2cwo_A 117 MHKETASDTLNAFLEEYCRITGLAREDALRE 147 (197)
T ss_dssp TCCSSHHHHHHHHHHHHHHHHCCCHHHHHHS
T ss_pred chhhhHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 4566777777889999999887666655533
No 129
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=30.67 E-value=58 Score=27.86 Aligned_cols=51 Identities=18% Similarity=0.279 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCCHhHHHhhhhhc-----cCchhHHHHHHHHHhHHhhhcccCCccc
Q psy10889 65 YYHLLKLFAHGTYQDYLKQKEEL-----KLPEMTQLQKKKLQNLTIVTLSLESKCI 115 (267)
Q Consensus 65 ~~~LL~lFa~Gt~~dy~~~~~~~-----~~p~L~~~~~~KLr~LtLlsLa~~~k~I 115 (267)
.+.++++|..|.+.||....+-. .+..++..+.+++|..-.++-...++.+
T Consensus 26 f~~~c~aFR~~r~~dFrq~rdi~eall~~~~~~~a~~~k~i~icQfL~RI~eG~~L 81 (211)
T 3bqo_A 26 CLSLCRAFRDGRSEDFRRTRNSAEAIIHGLSSLTACQLRTIYICQFLTRIAAGKTL 81 (211)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHTTTCT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHcCCCC
Confidence 35689999999999999886521 3445666778888888888877766655
No 130
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=30.55 E-value=78 Score=23.45 Aligned_cols=42 Identities=14% Similarity=0.223 Sum_probs=36.1
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCe
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSS 155 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~ 155 (267)
..++..+|++.++++ ...|-..|=.....|+|.-.-|...+.
T Consensus 50 ~~~~~~ela~~l~~~-~~tvs~~l~~L~~~gli~r~~~~~d~R 91 (142)
T 2bv6_A 50 SPVNVKKVVTELALD-TGTVSPLLKRMEQVDLIKRERSEVDQR 91 (142)
T ss_dssp SEEEHHHHHHHTTCC-TTTHHHHHHHHHHTTSEEEEECSSSTT
T ss_pred CCcCHHHHHHHHCCC-hhhHHHHHHHHHHCCCEEeecCCCCcc
Confidence 469999999999998 888999999999999999887765443
No 131
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=30.43 E-value=2.1e+02 Score=28.64 Aligned_cols=36 Identities=11% Similarity=0.133 Sum_probs=30.4
Q ss_pred cCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccE
Q psy10889 110 LESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIH 146 (267)
Q Consensus 110 ~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~ 146 (267)
.....++|++|++.++|+ ..++..-+...+..|++.
T Consensus 599 n~~~~~t~~ei~~~t~i~-~~~l~r~L~~l~k~~iL~ 634 (760)
T 1ldj_A 599 NTEDAYTVQQLTDSTQIK-MDILAQVLQILLKSKLLV 634 (760)
T ss_dssp GSSSEEEHHHHHHHTCCC-HHHHHHHHHHHHHTTTEE
T ss_pred cCCCCcCHHHHHHHHCcC-HHHHHHHHHHHHHCCcce
Confidence 455789999999999998 888888777777888885
No 132
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=30.21 E-value=2.3e+02 Score=23.32 Aligned_cols=38 Identities=11% Similarity=0.184 Sum_probs=34.1
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecC
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQ 151 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ 151 (267)
...++.+|++.++++ ...|=.-|=.....|+|...-+.
T Consensus 27 ~~~s~~eLa~~l~is-~stvs~hLk~Le~~GLV~~~~~~ 64 (202)
T 2p4w_A 27 RPYFVSELSRELGVG-QKAVLEHLRILEEAGLIESRVEK 64 (202)
T ss_dssp SCEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEECC
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCceEEEeec
Confidence 568999999999998 88999999999999999998774
No 133
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=29.65 E-value=87 Score=24.95 Aligned_cols=62 Identities=8% Similarity=0.158 Sum_probs=45.3
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHhHHHHHHHHHHHhhccc
Q psy10889 166 INPGDVTNMITEFQAWSDSCANVLKAIETQIGKA----NSEKHQHLAHSNAIDMEILNIKKSLKNQ 227 (267)
Q Consensus 166 ~~~~q~~~L~~~L~~W~~~~~~vl~~ie~~i~~a----~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 227 (267)
++++....|.+.|..|......+...|.+..... |++-......+..++.+|..+.+.|..-
T Consensus 7 ~T~~g~~~L~~el~~~~~~r~~~~~~i~~A~~~GDlsEnaey~aak~~q~~~e~ri~~L~~~L~~a 72 (156)
T 2f23_A 7 LTKAGYERLMQQLERERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIEARIDSLEDILSRA 72 (156)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4556788899999998877877777777655432 4444455567788899999999988753
No 134
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=28.96 E-value=2.6e+02 Score=23.61 Aligned_cols=76 Identities=11% Similarity=0.076 Sum_probs=49.9
Q ss_pred CchhHHHHHHHHhcCCHhHHHhhhhhccCchhHHH---HHHHHHhHHhhhcccCCcccCHHHHHHHhCCCChhhHHHHHH
Q psy10889 61 PHAGYYHLLKLFAHGTYQDYLKQKEELKLPEMTQL---QKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLII 137 (267)
Q Consensus 61 ~~~~~~~LL~lFa~Gt~~dy~~~~~~~~~p~L~~~---~~~KLr~LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI 137 (267)
+-...+.|=+.+-.|+|..|.+... ..+.+.+. ....+|.=..-.+...+..||-+.+++-|+..+..+++.|+-
T Consensus 98 ~I~~i~~L~~~L~~~~y~~fW~~l~--~~~~l~~~i~gf~dsIR~~I~~~i~~aY~sI~~~~la~lLg~~s~~el~~fi~ 175 (226)
T 1rz4_A 98 PIRQILYLGDLLETCHFQAFWQALD--ENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMS 175 (226)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHSC--TTCHHHHTSTTHHHHHHHHHHHHHHHHCSEECHHHHHHHTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHh--cChhHHHHHhHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHcCCCHHHHHHHHH
Confidence 4566788888899999999886543 22333221 122233322223334578999999999996335899999998
Q ss_pred H
Q psy10889 138 E 138 (267)
Q Consensus 138 ~ 138 (267)
+
T Consensus 176 ~ 176 (226)
T 1rz4_A 176 K 176 (226)
T ss_dssp H
T ss_pred H
Confidence 7
No 135
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=28.92 E-value=66 Score=23.92 Aligned_cols=38 Identities=5% Similarity=0.033 Sum_probs=32.5
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecC
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQ 151 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ 151 (267)
...++.+|++.|+++ ...|-..+=.....|+|..+-+.
T Consensus 33 ~~~~~~eLa~~lgis-~stvs~~L~~L~~~GlV~~~~~g 70 (118)
T 2jsc_A 33 GVCYPGQLAAHLGLT-RSNVSNHLSCLRGCGLVVATYEG 70 (118)
T ss_dssp TCCSTTTHHHHHSSC-HHHHHHHHHHHTTTTSEEEEECS
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCceEEEEEC
Confidence 357889999999998 88999998888899999877553
No 136
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=28.48 E-value=41 Score=26.59 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=30.6
Q ss_pred ccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCC
Q psy10889 114 CIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNS 154 (267)
Q Consensus 114 ~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~ 154 (267)
.++..+|++.++++ ...|=..|=.....|+|.-.-|...+
T Consensus 86 ~~t~~eLa~~l~is-~~tvs~~l~~Le~~GlV~r~~~~~Dr 125 (181)
T 2fbk_A 86 GLRPTELSALAAIS-GPSTSNRIVRLLEKGLIERREDERDR 125 (181)
T ss_dssp CBCHHHHHHHCSCC-SGGGSSHHHHHHHHTSEECCC-----
T ss_pred CCCHHHHHHHHCCC-HHHHHHHHHHHHHCcCEEecCCCCCC
Confidence 49999999999998 77777888888889999987665444
No 137
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=28.23 E-value=45 Score=25.93 Aligned_cols=27 Identities=15% Similarity=0.319 Sum_probs=23.8
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHH
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAI 140 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI 140 (267)
.-+||.+||+.|+|+ +..|...+-.|.
T Consensus 108 ~g~s~~EIA~~lgis-~~tV~~~l~rar 134 (157)
T 2lfw_A 108 EGFSPEDAAYLIEVD-TSEVETLVTEAL 134 (157)
T ss_dssp SCCCHHHHHHTTTSC-HHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcC-HHHHHHHHHHHH
Confidence 458999999999998 999999988774
No 138
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=28.03 E-value=61 Score=27.78 Aligned_cols=44 Identities=16% Similarity=0.196 Sum_probs=37.6
Q ss_pred CcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEE
Q psy10889 112 SKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELD 159 (267)
Q Consensus 112 ~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~ 159 (267)
+...+..+|++.++++ ..+|+.-+-+....|+|+ -..+++|.|.
T Consensus 176 ~~~~t~~~la~~~~l~-~~~V~~~l~~L~~~~~v~---~~~~~~~~~~ 219 (232)
T 2qlz_A 176 NGRATVEELSDRLNLK-EREVREKISEMARFVPVK---IINDNTVVLD 219 (232)
T ss_dssp SSEEEHHHHHHHHTCC-HHHHHHHHHHHTTTSCEE---EETTTEEEEC
T ss_pred cCCCCHHHHHHHhCcC-HHHHHHHHHHHHhcCCeE---EecCCeEEec
Confidence 5789999999999999 999999999999999998 2345666664
No 139
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=27.83 E-value=52 Score=21.01 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=18.3
Q ss_pred ccCHHHHHHHhCCCChhhHHHHHHHH
Q psy10889 114 CIPYDKLLKELDISNVRDLEDLIIEA 139 (267)
Q Consensus 114 ~IsY~~I~~~L~I~~~~evE~lvI~a 139 (267)
-.++.+|++.|+++ ...|...+-.+
T Consensus 13 g~s~~eIA~~l~is-~~tV~~~~~~~ 37 (61)
T 2jpc_A 13 GYTNHGISEKLHIS-IKTVETHRMNM 37 (61)
T ss_dssp SCCSHHHHHHTCSC-HHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCC-HHHHHHHHHHH
Confidence 36889999999997 77766555443
No 140
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=27.45 E-value=82 Score=27.03 Aligned_cols=45 Identities=29% Similarity=0.289 Sum_probs=36.8
Q ss_pred CcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEE
Q psy10889 112 SKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELD 159 (267)
Q Consensus 112 ~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~ 159 (267)
+..++..+|++.++++ ...|-..|=.....|+|... ...+.+.++
T Consensus 164 ~~~~s~~eLA~~lgls-ksTv~r~L~~Le~~GlV~r~--~r~~~~~LT 208 (244)
T 2wte_A 164 TKGTGITELAKMLDKS-EKTLINKIAELKKFGILTQK--GKDRKVELN 208 (244)
T ss_dssp HTCBCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEE--TTTTEEEEC
T ss_pred cCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEe--CCccEEEEC
Confidence 3469999999999998 89999999999999999986 334455544
No 141
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=27.37 E-value=1.2e+02 Score=24.49 Aligned_cols=68 Identities=19% Similarity=0.314 Sum_probs=35.3
Q ss_pred HHHHHhcCCHhHHHhhhhhccCchhHHHHHHHH-----------HhH--Hh-hhcccCCcccCHHHHHHHhCCCChhhHH
Q psy10889 68 LLKLFAHGTYQDYLKQKEELKLPEMTQLQKKKL-----------QNL--TI-VTLSLESKCIPYDKLLKELDISNVRDLE 133 (267)
Q Consensus 68 LL~lFa~Gt~~dy~~~~~~~~~p~L~~~~~~KL-----------r~L--tL-lsLa~~~k~IsY~~I~~~L~I~~~~evE 133 (267)
+-+-|..||+++...-...+..|.+.+....++ |-+ .| ..|+. +.|+=+++.+.+..= ...++
T Consensus 17 i~EYf~~~D~~Ea~~~l~eL~~p~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~--~~ls~~~i~~Gf~~l-le~ld 93 (165)
T 2rg8_A 17 IQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG--TVMSTTDVEKSFDKL-LKDLP 93 (165)
T ss_dssp HHHHHHHCCHHHHHHHHHHHTCSGGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBT--TTBCHHHHHHHHHHH-HHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHhCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHH-HHhCh
Confidence 455677888777665433333343322221111 111 12 23433 788888887777643 55566
Q ss_pred HHHHH
Q psy10889 134 DLIIE 138 (267)
Q Consensus 134 ~lvI~ 138 (267)
|+.|+
T Consensus 94 Dl~iD 98 (165)
T 2rg8_A 94 ELALD 98 (165)
T ss_dssp HHHHH
T ss_pred hhccc
Confidence 66555
No 142
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=26.93 E-value=72 Score=22.85 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=21.3
Q ss_pred ccCHHHHHHHhCCCChhhHHHHHHHHH
Q psy10889 114 CIPYDKLLKELDISNVRDLEDLIIEAI 140 (267)
Q Consensus 114 ~IsY~~I~~~L~I~~~~evE~lvI~aI 140 (267)
-.++.+|++.|+|+ ...|+..+-.++
T Consensus 44 G~s~~eIA~~L~iS-~~TV~~~~~~i~ 69 (90)
T 3ulq_B 44 GFTNQEIADALHLS-KRSIEYSLTSIF 69 (90)
T ss_dssp TCCHHHHHHHHTCC-HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHHHHH
Confidence 46999999999998 888887776653
No 143
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=26.59 E-value=65 Score=29.11 Aligned_cols=44 Identities=7% Similarity=0.087 Sum_probs=36.9
Q ss_pred HHhhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEE
Q psy10889 103 LTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHG 147 (267)
Q Consensus 103 LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~G 147 (267)
..|+.+...+..+|-.+|++.++++ ...|-.+|=+.+..|+|..
T Consensus 19 ~~il~~l~~~~~~sr~~la~~~~ls-~~tv~~~v~~L~~~g~i~~ 62 (406)
T 1z6r_A 19 GAVYRLIDQLGPVSRIDLSRLAQLA-PASITKIVHEMLEAHLVQE 62 (406)
T ss_dssp HHHHHHHHSSCSCCHHHHHHHTTCC-HHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCC-HHHHHHHHHHHHHCCcEEe
Confidence 3355555567889999999999998 8999999999999999865
No 144
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=26.58 E-value=62 Score=23.20 Aligned_cols=27 Identities=0% Similarity=0.208 Sum_probs=22.7
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHH
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAI 140 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI 140 (267)
.-.+|.+|++.|+|+ ...|...+-.+.
T Consensus 41 ~g~s~~eIA~~l~is-~~tV~~~l~r~~ 67 (95)
T 3c57_A 41 EGLTNKQIADRMFLA-EKTVKNYVSRLL 67 (95)
T ss_dssp TTCCHHHHHHHHTCC-HHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcC-HHHHHHHHHHHH
Confidence 347999999999998 899888877664
No 145
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=26.44 E-value=56 Score=24.61 Aligned_cols=27 Identities=11% Similarity=0.274 Sum_probs=23.2
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHH
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAI 140 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI 140 (267)
.-.||.+||+.|+|+ ...|...+-.|.
T Consensus 123 ~g~s~~EIA~~lgis-~~tV~~~~~ra~ 149 (164)
T 3mzy_A 123 RGYSYREIATILSKN-LKSIDNTIQRIR 149 (164)
T ss_dssp TTCCHHHHHHHHTCC-HHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCC-HHHHHHHHHHHH
Confidence 467999999999998 899988887764
No 146
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=26.16 E-value=59 Score=25.36 Aligned_cols=27 Identities=11% Similarity=0.175 Sum_probs=21.0
Q ss_pred cCHHHHHHHhCCCChhhHHHHHHHHHhcC
Q psy10889 115 IPYDKLLKELDISNVRDLEDLIIEAIYSD 143 (267)
Q Consensus 115 IsY~~I~~~L~I~~~~evE~lvI~aI~~g 143 (267)
.||.+|+++++++ ...|.. +-+++..|
T Consensus 76 ~syreIA~~~g~S-~aTIsR-v~r~L~~g 102 (119)
T 3kor_A 76 YTYATIEQESGAS-TATISR-VKRSLQWG 102 (119)
T ss_dssp CCHHHHHHHHCCC-HHHHHH-HHHHHHSS
T ss_pred CCHHHHHHHHCCC-HHHHHH-HHHHHhcC
Confidence 9999999999998 777776 44555443
No 147
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=26.02 E-value=99 Score=21.08 Aligned_cols=35 Identities=14% Similarity=0.237 Sum_probs=30.4
Q ss_pred cccCHHHHHHHh-----CCCChhhHHHHHHHHHhcCccEEE
Q psy10889 113 KCIPYDKLLKEL-----DISNVRDLEDLIIEAIYSDIIHGK 148 (267)
Q Consensus 113 k~IsY~~I~~~L-----~I~~~~evE~lvI~aI~~gLI~Gk 148 (267)
..++-.+|++.| +|+ ...|-..|=.....|+|.-.
T Consensus 32 ~~~s~~el~~~l~~~~~~is-~~TVyR~L~~L~~~Glv~~~ 71 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIG-LATVYRVLNQFDDAGIVTRH 71 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHHTSEEEE
T ss_pred CCCCHHHHHHHHHHhCCCCC-HhhHHHHHHHHHHCCCeEEE
Confidence 689999999999 897 88888888888889999743
No 148
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=25.15 E-value=1e+02 Score=25.45 Aligned_cols=47 Identities=6% Similarity=0.167 Sum_probs=39.1
Q ss_pred HHhhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEec
Q psy10889 103 LTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLD 150 (267)
Q Consensus 103 LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkID 150 (267)
-+|..|...+..++-.+|++.|+++ ...|=..|=.....|+|.=.=+
T Consensus 9 ~~I~~l~~~~~~~~~~~lA~~l~vs-~~tvs~~l~~Le~~GlV~r~~~ 55 (214)
T 3hrs_A 9 KCLYELGTRHNKITNKEIAQLMQVS-PPAVTEMMKKLLAEELLIKDKK 55 (214)
T ss_dssp HHHHHTTSSCSCCCHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHhcCCCcCHHHHHHHHCCC-hhHHHHHHHHHHHCCCEEEecC
Confidence 3455666677889999999999998 8899999999999999976533
No 149
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=24.80 E-value=69 Score=22.26 Aligned_cols=26 Identities=15% Similarity=0.317 Sum_probs=21.4
Q ss_pred ccCHHHHHHHhCCCChhhHHHHHHHHH
Q psy10889 114 CIPYDKLLKELDISNVRDLEDLIIEAI 140 (267)
Q Consensus 114 ~IsY~~I~~~L~I~~~~evE~lvI~aI 140 (267)
-.+|.+|++.|+|+ ...|...+-.+.
T Consensus 36 g~s~~eIA~~l~is-~~tV~~~l~r~~ 61 (82)
T 1je8_A 36 GLPNKMIARRLDIT-ESTVKVHVKHML 61 (82)
T ss_dssp TCCHHHHHHHHTSC-HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHHHHH
Confidence 47999999999998 888887776553
No 150
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=24.77 E-value=1.6e+02 Score=22.05 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10889 172 TNMITEFQAWSDSCANVLKAIETQIGKANSEKH 204 (267)
Q Consensus 172 ~~L~~~L~~W~~~~~~vl~~ie~~i~~a~~~~~ 204 (267)
..|..+...||..++.+...++..|..++.+-.
T Consensus 32 qELs~tfarLc~~Vd~t~~eL~~EI~~L~~eI~ 64 (96)
T 1t3j_A 32 QEMATTFARLCQQVDMTQKHLEEEIARLSKEID 64 (96)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458889999999999999999999998888655
No 151
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=24.76 E-value=32 Score=24.98 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHhcCccEEEecC
Q psy10889 130 RDLEDLIIEAIYSDIIHGKLDQ 151 (267)
Q Consensus 130 ~evE~lvI~aI~~gLI~GkIDQ 151 (267)
+.||+.||.....|-|.|+||.
T Consensus 37 ~~VE~~Li~lAq~Gqi~~ki~e 58 (80)
T 1eij_A 37 EQIELQLIQLAQMGRVRSKITD 58 (80)
T ss_dssp HHHHHHHHHHHHCCSSCCCCCH
T ss_pred HHHHHHHHHHHHcCCCCCCcCH
Confidence 5799999999999999999864
No 152
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=23.84 E-value=58 Score=20.41 Aligned_cols=22 Identities=14% Similarity=0.282 Sum_probs=18.2
Q ss_pred ccCHHHHHHHhCCCChhhHHHHH
Q psy10889 114 CIPYDKLLKELDISNVRDLEDLI 136 (267)
Q Consensus 114 ~IsY~~I~~~L~I~~~~evE~lv 136 (267)
-.++.+|++.|+|+ ...|..++
T Consensus 31 g~s~~eIA~~lgis-~~TV~~~l 52 (55)
T 2x48_A 31 GYTVQQIANALGVS-ERKVRRYL 52 (55)
T ss_dssp TCCHHHHHHHHTSC-HHHHHHHH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHH
Confidence 35999999999998 77777665
No 153
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=23.82 E-value=64 Score=25.29 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=23.6
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHH
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAI 140 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI 140 (267)
...||.+|++.|+++ +..|...+-.|.
T Consensus 155 ~g~s~~EIA~~lgis-~~tV~~~l~ra~ 181 (194)
T 1or7_A 155 DGLSYEEIAAIMDCP-VGTVRSRIFRAR 181 (194)
T ss_dssp TCCCHHHHHHHTTSC-HHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCCC-HHHHHHHHHHHH
Confidence 458999999999998 999998888774
No 154
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=23.77 E-value=77 Score=21.21 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=21.5
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHH
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAI 140 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI 140 (267)
.-.+|.+|++.++++ ...|...+-.+.
T Consensus 30 ~g~s~~eIA~~l~is-~~tV~~~~~r~~ 56 (79)
T 1x3u_A 30 AGLPNKSIAYDLDIS-PRTVEVHRANVM 56 (79)
T ss_dssp TTCCHHHHHHHTTSC-HHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcC-HHHHHHHHHHHH
Confidence 457999999999998 888877766553
No 155
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=23.68 E-value=1e+02 Score=26.94 Aligned_cols=51 Identities=10% Similarity=0.136 Sum_probs=38.5
Q ss_pred HHhHHhhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecC
Q psy10889 100 LQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQ 151 (267)
Q Consensus 100 Lr~LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ 151 (267)
.+++..+..-.....++-.+|++.|+|+ ...|=..|-.+-..|+|+-++..
T Consensus 7 ~~~~~~ia~l~~~~~~~~~ela~~l~vS-~~tIrRdL~~l~~~G~v~iri~g 57 (315)
T 2w48_A 7 IRLIVKIAQLYYEQDMTQAQIARELGIY-RTTISRLLKRGREQGIVTIAINY 57 (315)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHTTCC-HHHHHHHHHHHHHTTSEEEEECS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCcEEEEecC
Confidence 3444333333344569999999999998 88999999999999999866654
No 156
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=22.72 E-value=1.2e+02 Score=19.73 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=18.8
Q ss_pred ccCHHHHHHHhCCCChhhHHHHHHHH
Q psy10889 114 CIPYDKLLKELDISNVRDLEDLIIEA 139 (267)
Q Consensus 114 ~IsY~~I~~~L~I~~~~evE~lvI~a 139 (267)
-.++.+|++.++++ ...|...+-.+
T Consensus 26 g~s~~eIA~~l~is-~~tV~~~~~~~ 50 (74)
T 1fse_A 26 DKTTKEIASELFIS-EKTVRNHISNA 50 (74)
T ss_dssp TCCHHHHHHHHTSC-HHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCC-HHHHHHHHHHH
Confidence 35999999999997 77766655443
No 157
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=22.53 E-value=58 Score=24.72 Aligned_cols=44 Identities=11% Similarity=0.018 Sum_probs=35.7
Q ss_pred CcccCHHHHHHHh--CCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEE
Q psy10889 112 SKCIPYDKLLKEL--DISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELD 159 (267)
Q Consensus 112 ~k~IsY~~I~~~L--~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~ 159 (267)
+..+++.+|++.+ +++ ...|-.-|-.....|+|... .++...++
T Consensus 25 ~g~~s~~eLA~~l~~giS-~~aVs~rL~~Le~~GLV~~~---~rg~Y~LT 70 (111)
T 3b73_A 25 EGNGSPKELEDRDEIRIS-KSSVSRRLKKLADHDLLQPL---ANGVYVIT 70 (111)
T ss_dssp HSCBCHHHHHTSTTCCSC-HHHHHHHHHHHHHTTSEEEC---STTCEEEC
T ss_pred cCCCCHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCEEec---CCceEEEC
Confidence 3589999999999 998 88999999999999999985 33444444
No 158
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=22.36 E-value=33 Score=25.03 Aligned_cols=22 Identities=14% Similarity=0.291 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHhcCccEEEecC
Q psy10889 130 RDLEDLIIEAIYSDIIHGKLDQ 151 (267)
Q Consensus 130 ~evE~lvI~aI~~gLI~GkIDQ 151 (267)
+.||+.||.+...|-|.|+|+.
T Consensus 35 ~~VE~~Li~lAq~Gqi~~ki~e 56 (81)
T 2fh0_A 35 QAVETYLKKLIATNNVTHKITE 56 (81)
T ss_dssp HHHHHHHHHHHHHTCCSCCBCH
T ss_pred HHHHHHHHHHHHcCCCCCCcCH
Confidence 6799999999999999999864
No 159
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=22.22 E-value=1.2e+02 Score=17.65 Aligned_cols=23 Identities=13% Similarity=0.273 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy10889 172 TNMITEFQAWSDSCANVLKAIET 194 (267)
Q Consensus 172 ~~L~~~L~~W~~~~~~vl~~ie~ 194 (267)
..+..-|.+-+.+++.++..++.
T Consensus 2 Q~IkkELtQIK~kvDsLLe~Le~ 24 (28)
T 1txp_A 2 QAIKKELTQIKQKVDSLLENLEK 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677788888888888888764
No 160
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=22.11 E-value=2.4e+02 Score=20.73 Aligned_cols=64 Identities=8% Similarity=0.060 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHhHHhhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCe
Q psy10889 91 EMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSS 155 (267)
Q Consensus 91 ~L~~~~~~KLr~LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~ 155 (267)
+|++.+..=|..|..+.-...+..+++.+|++.+.++ ..-+=..|=..-..|||.=..+.-.+.
T Consensus 13 gl~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~-~stLsR~l~rLe~~GLV~r~~~~D~R~ 76 (96)
T 2obp_A 13 GIDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLP-MSVLRRVLTQLQAAGLADVSVEADGRG 76 (96)
T ss_dssp CCCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEECTTSCE
T ss_pred CCCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCc-hhhHHHHHHHHHHCCCEEeecCCCCce
Confidence 4777776666766655444566778999999999998 888888888888899999777744344
No 161
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=21.36 E-value=1.1e+02 Score=27.17 Aligned_cols=42 Identities=12% Similarity=0.050 Sum_probs=31.7
Q ss_pred HhhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccE
Q psy10889 104 TIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIH 146 (267)
Q Consensus 104 tLlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~ 146 (267)
.|+.+...+..++..+|+++|+|+ ...|-.-|-..-..|++.
T Consensus 9 ~Il~~L~~~~~~s~~eLa~~l~vS-~~ti~r~l~~L~~~G~~i 50 (321)
T 1bia_A 9 KLIALLANGEFHSGEQLGETLGMS-RAAINKHIQTLRDWGVDV 50 (321)
T ss_dssp HHHHHHTTSSCBCHHHHHHHHTSC-HHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHcCCCcCHHHHHHHHCCC-HHHHHHHHHHHHhCCCcE
Confidence 344444567889999999999998 887777776666678764
No 162
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=21.19 E-value=1.2e+02 Score=22.01 Aligned_cols=37 Identities=8% Similarity=0.128 Sum_probs=31.3
Q ss_pred cccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEec
Q psy10889 113 KCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLD 150 (267)
Q Consensus 113 k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkID 150 (267)
...++.+|++.|+++ ...|-..|-.....|+|.-.=+
T Consensus 44 ~~~s~~ela~~l~is-~stvsr~l~~Le~~Glv~~~~~ 80 (119)
T 2lkp_A 44 GPLPVTDLAEAIGME-QSAVSHQLRVLRNLGLVVGDRA 80 (119)
T ss_dssp CCCCHHHHHHHHSSC-HHHHHHHHHHHHHHCSEEEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCCEEEEec
Confidence 468999999999998 8888888888888999976543
No 163
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=20.84 E-value=1.2e+02 Score=21.57 Aligned_cols=42 Identities=12% Similarity=0.187 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhccc
Q psy10889 183 DSCANVLKAIETQIGKANSEKHQHLAHSNAIDMEILNIKKSLKNQ 227 (267)
Q Consensus 183 ~~~~~vl~~ie~~i~~a~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 227 (267)
+++++.+..++.+.++.=++- ..-+..+.++|..+.+.++..
T Consensus 10 ~~LE~sld~LQTrfARLLaEy---~ssQ~KLKqRit~LE~~~~~~ 51 (74)
T 3swf_A 10 TRMESSVDLLQTRFARILAEY---ESMQQKLKQRLTKVEKFLKPL 51 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhccc
Confidence 344455555555554433332 224556666777777776653
No 164
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=20.83 E-value=1.9e+02 Score=21.83 Aligned_cols=66 Identities=15% Similarity=0.216 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHhHHhhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEEEee
Q psy10889 91 EMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELDFA 161 (267)
Q Consensus 91 ~L~~~~~~KLr~LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V~~~ 161 (267)
+|+..+. +.|.++... .+..++-.+|++.++++ ...+=.+|=.....|+|.=.-|...+....-+.
T Consensus 32 gLt~~q~---~vL~~L~~~-~~~~~t~~eLa~~l~~~-~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~L 97 (147)
T 4b8x_A 32 GLTFARY---EALVLLTFS-KSGELPMSKIGERLMVH-PTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATI 97 (147)
T ss_dssp TCCHHHH---HHHHHHHTS-GGGEEEHHHHHHHHTCC-HHHHHHHHHHHHHTTSEEEEECC----CEEEEE
T ss_pred CCCHHHH---HHHHHHHHC-CCCCcCHHHHHHHHCCC-HHHHHHHHHHHHhCCCEEEeecCCcCceeEEEE
Confidence 4555443 333433332 34578999999999998 889999999999999999999987765544443
No 165
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=20.83 E-value=48 Score=23.08 Aligned_cols=51 Identities=20% Similarity=0.070 Sum_probs=37.5
Q ss_pred cCchhHHHHHHHHHhHHhhhcccCCcccCHHHHHHHhCCCChhhHHHHHHHHH
Q psy10889 88 KLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAI 140 (267)
Q Consensus 88 ~~p~L~~~~~~KLr~LtLlsLa~~~k~IsY~~I~~~L~I~~~~evE~lvI~aI 140 (267)
.+|++++....||.---+.|+-. --..+.++|..-.+|+ ...++.+++.|=
T Consensus 11 ~L~Gi~~~~~~kL~e~Gi~Tved-lA~~~~~eL~~i~gis-e~kA~~ii~aAr 61 (70)
T 1wcn_A 11 NLEGVDRDLAFKLAARGVCTLED-LAEQGIDDLADIEGLT-DEKAGALIMAAR 61 (70)
T ss_dssp SSTTCCHHHHHHHHTTTCCSHHH-HHTSCHHHHHTSSSCC-HHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHcCCCcHHH-HHcCCHHHHHHccCCC-HHHHHHHHHHHH
Confidence 67888888888887655444311 1134788888888998 899999999873
No 166
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=20.52 E-value=1e+02 Score=25.99 Aligned_cols=37 Identities=8% Similarity=0.161 Sum_probs=32.0
Q ss_pred CCcccCHHHHHHHhCCCChhhHHHHHHHHHhcCccEEE
Q psy10889 111 ESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGK 148 (267)
Q Consensus 111 ~~k~IsY~~I~~~L~I~~~~evE~lvI~aI~~gLI~Gk 148 (267)
....++..+|++.++++ ...+-.++-.....|+|.-.
T Consensus 20 ~~~~~~~~ela~~~gl~-~stv~r~l~~L~~~G~v~~~ 56 (249)
T 1mkm_A 20 NPGDVSVSEIAEKFNMS-VSNAYKYMVVLEEKGFVLRK 56 (249)
T ss_dssp CSSCBCHHHHHHHTTCC-HHHHHHHHHHHHHTTSEEEC
T ss_pred CCCCCCHHHHHHHHCcC-HHHHHHHHHHHHHCCcEEEC
Confidence 34579999999999998 88999999888899999864
No 167
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=20.43 E-value=90 Score=22.84 Aligned_cols=25 Identities=16% Similarity=0.201 Sum_probs=18.8
Q ss_pred ccCHHHHHHHhCCCChhhHHHHHHHH
Q psy10889 114 CIPYDKLLKELDISNVRDLEDLIIEA 139 (267)
Q Consensus 114 ~IsY~~I~~~L~I~~~~evE~lvI~a 139 (267)
-.+|.+|++.|+|+ ...|...+-.+
T Consensus 49 G~s~~EIA~~L~iS-~~TV~~~l~ri 73 (99)
T 1p4w_A 49 GFLVTEIAKKLNRS-IKTISSQKKSA 73 (99)
T ss_dssp TCCHHHHHHHHTSC-HHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHHHH
Confidence 57899999999997 77766655443
No 168
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=20.21 E-value=74 Score=22.38 Aligned_cols=26 Identities=4% Similarity=0.194 Sum_probs=21.0
Q ss_pred ccCHHHHHHHhCCCChhhHHHHHHHHH
Q psy10889 114 CIPYDKLLKELDISNVRDLEDLIIEAI 140 (267)
Q Consensus 114 ~IsY~~I~~~L~I~~~~evE~lvI~aI 140 (267)
-.+|.+|++.|+|+ ...|...+-.+.
T Consensus 44 g~s~~eIA~~l~is-~~tV~~~l~r~~ 69 (91)
T 2rnj_A 44 GYSNQEIASASHIT-IKTVKTHVSNIL 69 (91)
T ss_dssp TCCTTHHHHHHTCC-HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHHHHH
Confidence 47999999999998 888877766553
No 169
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=20.06 E-value=3.6e+02 Score=24.27 Aligned_cols=94 Identities=11% Similarity=0.114 Sum_probs=58.2
Q ss_pred hhHHHHHHHHhc-CCHhHHHhhhhh-c--cC----------chhHHHHHHH-------HHhHHhhhcccCCcccCHHHHH
Q psy10889 63 AGYYHLLKLFAH-GTYQDYLKQKEE-L--KL----------PEMTQLQKKK-------LQNLTIVTLSLESKCIPYDKLL 121 (267)
Q Consensus 63 ~~~~~LL~lFa~-Gt~~dy~~~~~~-~--~~----------p~L~~~~~~K-------Lr~LtLlsLa~~~k~IsY~~I~ 121 (267)
..||+.|..+.. |++..|..+.-. + .. ..+-+....+ .+...|+.+...+..++-++++
T Consensus 239 ~~Yy~aL~~~~~~~d~~~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~p~~t~~~~~ 318 (373)
T 2qc0_A 239 QDYYRLLLNVTTQQEWQPWIIFILNAVEQTAKWTTHKIAAARELIAHTTEYVRQQLPKIYSHELVQVIFEQPYCRIQNLV 318 (373)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHCSEEEHHHHH
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHhCCcccHHHHH
Confidence 458888888864 899888765210 0 00 0011111111 1223444444456677889999
Q ss_pred HHhCCCChhhHHHHHHHHHhcCccEEEecCCCCeEEE
Q psy10889 122 KELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLEL 158 (267)
Q Consensus 122 ~~L~I~~~~evE~lvI~aI~~gLI~GkIDQ~~~~v~V 158 (267)
+.++++ ...+...|-+....|+|.-. ...+..+.+
T Consensus 319 ~~~gvS-~~Ta~r~L~~L~e~GiL~~~-~~gR~~~y~ 353 (373)
T 2qc0_A 319 ESGLAK-RQTASVYLKQLCDIGVLEEV-QSGKEKLFV 353 (373)
T ss_dssp HTSSSC-HHHHHHHHHHHHHTTSCEEC---CCSCEEE
T ss_pred HHhCCC-HHHHHHHHHHHHHCCcEEEe-cCCCceEEe
Confidence 999998 99999999999999999733 333444444
Done!