RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10889
(267 letters)
>gnl|CDD|216479 pfam01399, PCI, PCI domain. This domain has also been called the
PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15).
Length = 100
Score = 66.9 bits (164), Expect = 3e-14
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Query: 65 YYHLLKLFAHGTYQDYLKQKEELK-------LPEMTQLQKKKLQNLTIVTLSLESKCIPY 117
Y LL+ F G D+ + + + L E+ + ++K++ L + L+ I
Sbjct: 1 YRDLLRAFYSGDLSDFEEILADNEDELLDDGLAELLEDLRRKIRELNLRRLAKPYSSISL 60
Query: 118 DKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRN 153
L K L +S V ++E ++ + I I GK+DQ N
Sbjct: 61 SDLAKLLGLS-VDEVEKILSKLIRDGRIRGKIDQVN 95
>gnl|CDD|214803 smart00753, PAM, PCI/PINT associated module.
Length = 88
Score = 55.3 bits (134), Expect = 3e-10
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Query: 96 QKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSS 155
++K++ ++ LS I L K L +S ++E L+ +AI I K+DQ N
Sbjct: 6 LQRKIRLTNLLQLSEPYSSISLSDLAKLLGLSVP-EVEKLVSKAIRDGEISAKIDQVNGI 64
Query: 156 LELDFAIGRDINPGDVTNMITEFQAW 181
+E + R P +
Sbjct: 65 VEFEEVDPRRSEPL--AQFAETLKKL 88
>gnl|CDD|214509 smart00088, PINT, motif in proteasome subunits, Int-6, Nip-1 and
TRIP-15. Also called the PCI (Proteasome, COP9,
Initiation factor 3) domain. Unknown function.
Length = 88
Score = 55.3 bits (134), Expect = 3e-10
Identities = 20/86 (23%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Query: 96 QKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSS 155
++K++ ++ LS I L K L +S ++E L+ +AI I K+DQ N
Sbjct: 6 LQRKIRLTNLLQLSEPYSSISLSDLAKLLGLSVP-EVEKLVSKAIRDGEISAKIDQVNGI 64
Query: 156 LELDFAIGRDINPGDVTNMITEFQAW 181
+E + R P +
Sbjct: 65 VEFEEVDPRRSEPL--AQFAETLKKL 88
>gnl|CDD|206355 pfam14187, DUF4310, Domain of unknown function (DUF4310). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 214 and 231 amino
acids in length.
Length = 210
Score = 27.7 bits (62), Expect = 5.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 212 AIDMEILNIKKSLKNQTNQSQDTDDMMGSDN 242
I I+ I+K NQ+N + D MMG+ N
Sbjct: 124 IIGYIIILIRKFTINQSNSTFGADIMMGAGN 154
>gnl|CDD|239433 cd03317, NAAAR, N-acylamino acid racemase (NAAAR), an octameric
enzyme that catalyzes the racemization of N-acylamino
acids. NAAARs act on a broad range of N-acylamino acids
rather than amino acids. Enantiopure amino acids are of
industrial interest as chiral building blocks for
antibiotics, herbicides, and drugs. NAAAR is a member of
the enolase superfamily, characterized by the presence
of an enolate anion intermediate which is generated by
abstraction of the alpha-proton of the carboxylate
substrate by an active site residue and is stabilized by
coordination to the essential Mg2+ ion.
Length = 354
Score = 28.0 bits (63), Expect = 6.3
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 16/71 (22%)
Query: 30 VELIKQVLEA-PGI-FMFK-----ELIDMPLIKELDTSPHAGYYHLLKL---FAHGTYQD 79
VE +K V E P I M L D+PL+K LD Y LL + A D
Sbjct: 166 VEPLKAVRERFPDIPLMADANSAYTLADIPLLKRLDE------YGLLMIEQPLAADDLID 219
Query: 80 YLKQKEELKLP 90
+ + ++ LK P
Sbjct: 220 HAELQKLLKTP 230
>gnl|CDD|222768 PHA00002, A, DNA replication initiation protein gpA.
Length = 515
Score = 28.0 bits (62), Expect = 7.1
Identities = 24/106 (22%), Positives = 45/106 (42%), Gaps = 3/106 (2%)
Query: 29 AVELIKQVLEAPGIFMFKELIDMPLIKELDTSP---HAGYYHLLKLFAHGTYQDYLKQKE 85
A+E IK ++E G+ + + ++ + K++D YH ++
Sbjct: 12 AIEAIKPLVETAGMSVLAQSPNLRIWKQVDNRIKLLEEILYHYTNGIRRDNGDFWMNGHL 71
Query: 86 ELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRD 131
+ PE L + ++ TLSL + K+L +LDI+N D
Sbjct: 72 PQRAPEELHLDDEIGEDYRSTTLSLIDEMAECYKVLGQLDINNTID 117
>gnl|CDD|118809 pfam10285, Luciferase_cat, Luciferase catalytic domain. This
domain is the catalytic domain of dinoflagellate
luciferase. Luciferase is involved in catalyzing the
light emitting reaction in bioluminescence. The
structure of this domain has been solved. The core part
of the domain is a 10 stranded beta barrel that is
structurally similar to lipocalins and FABP.
Length = 296
Score = 27.2 bits (60), Expect = 8.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 230 QSQDTDDMMGSDNVVDKIGKKYK 252
QS+D + G DNV D +GK Y
Sbjct: 240 QSRDYTALAGLDNVPDNLGKPYT 262
>gnl|CDD|131370 TIGR02317, prpB, methylisocitrate lyase. Members of this family
are methylisocitrate lyase, also called
(2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate
pyruvate-lyase. This enzyme acts in propionate
metabolism. It cleaves a carbon-carbon bond to convert
2-methylisocitrate to pyruvate plus succinate. Some
members of this family have been annotated, incorrectly
it seems, as the related protein
carboxyphosphoenolpyruvate phosphomutase, which is
involved in synthesizing the antibiotic bialaphos in
Streptomyces hygroscopicus.
Length = 285
Score = 27.4 bits (61), Expect = 8.5
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 1 MVAEKASGVGTNPLEQFVLLAKTTKGAAAVELIKQVLE 38
MV + A+ V E FV++A+T A AVE + +E
Sbjct: 130 MVDKIAAAVDAKRDEDFVIIARTD--ARAVEGLDAAIE 165
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.132 0.365
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,261,151
Number of extensions: 1259223
Number of successful extensions: 860
Number of sequences better than 10.0: 1
Number of HSP's gapped: 856
Number of HSP's successfully gapped: 30
Length of query: 267
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 172
Effective length of database: 6,723,972
Effective search space: 1156523184
Effective search space used: 1156523184
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.1 bits)