RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10889
(267 letters)
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix
motif, developmental protein, phosphoprotein; 1.50A
{Arabidopsis thaliana}
Length = 169
Score = 163 bits (414), Expect = 7e-51
Identities = 67/164 (40%), Positives = 100/164 (60%), Gaps = 3/164 (1%)
Query: 11 TNPLEQFVLLAKTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHLLK 70
++Q V A T K A LI + P +F F E++ +P + +L+ + + Y LL+
Sbjct: 8 AEIIDQLVKRASTCKSEALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLR 67
Query: 71 LFAHGTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVR 130
LFAHGT+ DY +LP ++ Q KL+ LT++TL+ +K +PYD L+ ELD+SNVR
Sbjct: 68 LFAHGTWGDYKCNAT--RLPHLSPDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVR 125
Query: 131 DLEDLII-EAIYSDIIHGKLDQRNSSLELDFAIGRDINPGDVTN 173
+LED +I E +Y+ I+ GKLDQ E+ FA GRD+ PG + N
Sbjct: 126 ELEDFLINECMYAGIVRGKLDQLKRCFEVPFAAGRDLRPGQLGN 169
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.0 bits (150), Expect = 5e-11
Identities = 49/270 (18%), Positives = 97/270 (35%), Gaps = 84/270 (31%)
Query: 9 VGTNPLEQFVLLAKTTKGAAAVELIKQVLEAPGIFMFKELID-----MPLIKELDTSPHA 63
V NP+ + G + I++ A +F+ ++D + KE++
Sbjct: 1665 VINNPVNLTIHF-----GGEKGKRIRENYSA---MIFETIVDGKLKTEKIFKEIN----- 1711
Query: 64 GYYHLLKL-FAHGTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLS------LESK-CI 115
H F +K L + TQ + + L+SK I
Sbjct: 1712 --EHSTSYTFRS--------EKGLLSATQFTQ--------PALTLMEKAAFEDLKSKGLI 1753
Query: 116 PYDKL-----LKE---L-DISNVRDLEDLIIEAIYSDIIH--GKLDQ----RNSSLELDF 160
P D L E L +++V +E L+ +++ G Q R+ ++
Sbjct: 1754 PADATFAGHSLGEYAALASLADVMSIESLV------EVVFYRGMTMQVAVPRDELGRSNY 1807
Query: 161 AIGRDINPGDVTNMITEFQAWSDSCANVLKAIETQIGKA------NSEKHQHLA--HSNA 212
+ INPG V ++ ++ V++ + + G N E Q++A A
Sbjct: 1808 GMIA-INPGRVAASFSQ-----EALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRA 1861
Query: 213 IDM--EILN-IK-KSLKN-QTNQSQDTDDM 237
+D +LN IK + + + +S +++
Sbjct: 1862 LDTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
Score = 43.5 bits (102), Expect = 5e-05
Identities = 29/127 (22%), Positives = 42/127 (33%), Gaps = 37/127 (29%)
Query: 59 TSPHAGYYH--LLKLFAHGTYQDYLKQKEELKLPEMTQLQKKKLQNLTIVTLSLESKCIP 116
SP +H LL + +D +K K +Q IP
Sbjct: 424 ASP----FHSHLLVPASDLINKDLVKNNVSFN--------AKDIQ-------------IP 458
Query: 117 -YDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLD-----QRNSSLELDFAIGRDINPGD 170
YD D S++R L I E I II + Q ++ LDF G G
Sbjct: 459 VYDTF----DGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGV 514
Query: 171 VTNMITE 177
+T+ +
Sbjct: 515 LTHRNKD 521
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.0 bits (108), Expect = 7e-06
Identities = 46/279 (16%), Positives = 88/279 (31%), Gaps = 82/279 (29%)
Query: 9 VGTNPLEQFVLLAKTTKGAAAVELIKQVLEAPGIFMFKELIDMPLIKELDTSPHAGYYHL 68
+ TNP ++ G A + K V +I+ L L+ + + +
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDK----LTTIIESSL-NVLEPAEYRKMFDR 377
Query: 69 LKLFAHGTYQDYLKQKEELKLPE------------------MTQLQKKKLQN-------L 103
L +F +P + +L K L +
Sbjct: 378 LSVF-----------PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426
Query: 104 TIVTLSLESKCIPYD------KLLKELDISNVRDLEDLIIEA----IYSDIIH----GKL 149
+I ++ LE K + ++ +I D +DLI YS I H +
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH 486
Query: 150 DQRNSSLE---LDFA-IGRDIN--------PGDVTNMITEFQAW----SDSCAN---VLK 190
+R + LDF + + I G + N + + + + D+ ++
Sbjct: 487 PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN 546
Query: 191 AIETQIGKANSEKHQHLAHSNAIDMEILNIKKSLKNQTN 229
AI + K ++L S D +L I +L +
Sbjct: 547 AILDFLPKIE----ENLICSKYTD--LLRI--ALMAEDE 577
Score = 41.8 bits (97), Expect = 2e-04
Identities = 31/182 (17%), Positives = 70/182 (38%), Gaps = 40/182 (21%)
Query: 11 TNPLEQFVLLAKTTKGAA------AVELIKQVLEAPGIFMFKELIDM-PLIKELDTS--- 60
N L ++ L+ K K + +EL ++ + + ++D + K D+
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA--LHRSIVDHYNIPKTFDSDDLI 465
Query: 61 -PHA-GY------YHLLK--------LFAHGTYQDY--LKQKEELKLPEMTQLQKKKLQN 102
P+ Y +HL LF + D+ L+QK ++ + N
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRM-VFLDFRFLEQK--IRHDSTAWNASGSILN 522
Query: 103 LTIVTLSLESKCI-----PYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLE 157
T+ L I Y++L+ + + + +E+ +I + Y+D++ L + ++
Sbjct: 523 -TLQQLKFYKPYICDNDPKYERLVNAI-LDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580
Query: 158 LD 159
+
Sbjct: 581 EE 582
Score = 30.6 bits (68), Expect = 0.61
Identities = 27/202 (13%), Positives = 59/202 (29%), Gaps = 52/202 (25%)
Query: 91 EMTQLQKKKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLII-EAIYSDIIHGKL 149
E + Q Q I+++ D + D +V+D+ I+ + II
Sbjct: 10 ETGEHQ---YQYKDILSVFE-------DAFVDNFDCKDVQDMPKSILSKEEIDHII--MS 57
Query: 150 DQRNSSLELDFAIGRDINPGDVTNMITEF-------------QAWSDSC---ANVLKAIE 193
S F M+ +F + + +
Sbjct: 58 KDAVSGTLRLFWTLLSKQ----EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI 113
Query: 194 TQIGKANSEKHQHLAHSNAIDMEILNIKKSLKN-QTNQSQDTDDMMGSDNVVDKIGK--- 249
Q + ++ ++ + L ++++L + ++ D ++GS GK
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS-------GKTWV 166
Query: 250 ------KYKIKSNRGTSNTKFW 265
YK++ FW
Sbjct: 167 ALDVCLSYKVQCKMD--FKIFW 186
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.60
Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 8/23 (34%)
Query: 54 IKELDTSPHAGYYHLLKLFAHGT 76
+K+L S LKL+A +
Sbjct: 22 LKKLQAS--------LKLYADDS 36
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export,
transcription; 2.12A {Homo sapiens}
Length = 203
Score = 29.9 bits (67), Expect = 0.70
Identities = 21/123 (17%), Positives = 45/123 (36%), Gaps = 14/123 (11%)
Query: 50 DMPLIKELDTSPHAGYYHLLKLFAHG---TYQDYLKQKEELKLPEMTQLQKKKLQNLTIV 106
MP ++ L + + + + G + L + E + L +KL+ +T
Sbjct: 68 HMPTVELLKKYHLMQFAEVTRAVSEGNLLLLHEALAKHEAFFIRCGIFLILEKLKIITYR 127
Query: 107 TL------SLESKCIPYDKLLKELDISNVRDLEDLIIE-----AIYSDIIHGKLDQRNSS 155
L L++ + D L L V D++ ++ IY + G + ++
Sbjct: 128 NLFKKVYLLLKTHQLSLDAFLVALKFMQVEDVDIDEVQCILANLIYMGHVKGYISHQHQK 187
Query: 156 LEL 158
L +
Sbjct: 188 LVV 190
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha
solenoid, regulatory PART LID, hydrolase, protein
binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Length = 394
Score = 29.8 bits (66), Expect = 0.84
Identities = 12/104 (11%), Positives = 33/104 (31%), Gaps = 11/104 (10%)
Query: 98 KKLQNLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLE 157
+ + + + + + + + + +E + + I G LDQ L
Sbjct: 300 DTMLEQNLCRIIEPYSRVQVAHVAESIQL-PMPQVEKKLSQMILDKKFSGILDQGEGVLI 358
Query: 158 LDFAIGRDINPGDVTNMITEFQAWSDSCANVLKAIETQIGKANS 201
+ D ++ ++ ++ K ++T KA
Sbjct: 359 VFEETPVD----------KTYERVLETIQSMGKVVDTLYQKAKK 392
>2auv_A Potential NAD-reducing hydrogenase subunit; thioredoxin,
thiordoxin-like, oxidoreductase; NMR {Desulfovibrio
fructosovorans}
Length = 85
Score = 25.9 bits (58), Expect = 4.4
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 237 MMGSDNVVDKIGKKYKIKSNRGTSNTKF 264
+ G+D VV ++ KI T + +F
Sbjct: 19 VKGADKVVHAFKEQLKIDIGDVTPDGRF 46
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Length = 84
Score = 25.1 bits (55), Expect = 9.5
Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 93 TQLQKKKLQ-NLTIVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQ 151
+ L + ++ NL + + I +++L L+I E + + I ++G +DQ
Sbjct: 10 SILDRAVIEHNLLSASKLYNN--ITFEELGALLEIP-AAKAEKIASQMITEGRMNGFIDQ 66
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.132 0.365
Gapped
Lambda K H
0.267 0.0473 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,949,793
Number of extensions: 232037
Number of successful extensions: 340
Number of sequences better than 10.0: 1
Number of HSP's gapped: 337
Number of HSP's successfully gapped: 20
Length of query: 267
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 175
Effective length of database: 4,133,061
Effective search space: 723285675
Effective search space used: 723285675
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.0 bits)