RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10889
         (267 letters)



>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 84

 Score = 27.4 bits (61), Expect = 0.50
 Identities = 10/55 (18%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 105 IVTLSLESKCIPYDKLLKELDISNVRDLEDLIIEAIYSDIIHGKLDQRNSSLELD 159
           +++ S     I +++L   L+I      E +  + I    ++G +DQ +  +  +
Sbjct: 21  LLSASKLYNNITFEELGALLEI-PAAKAEKIASQMITEGRMNGFIDQIDGIVHFE 74


>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain
           {Penicillium minioluteum [TaxId: 28574]}
          Length = 373

 Score = 27.0 bits (59), Expect = 2.5
 Identities = 7/41 (17%), Positives = 11/41 (26%), Gaps = 4/41 (9%)

Query: 204 HQHLAHSNAIDMEILNIKKSLKNQTNQSQDTDDMMGSDNVV 244
                 ++ I  +I +     K        TD      N V
Sbjct: 148 TMDFNGNSGISSQISDY----KQVGAFFFQTDGPEIYPNSV 184


>d1vpra1 b.60.1.7 (A:868-1218) Dinoflagellate luciferase
           {Lingulodinium polyedrum [TaxId: 160621]}
          Length = 351

 Score = 26.4 bits (58), Expect = 4.2
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 230 QSQDTDDMMGSDNVVDKIGKKYKIKS 255
           QS+D   + G DN    +GK Y   +
Sbjct: 316 QSRDYTALAGRDNAPTNLGKPYPTLA 341


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.132    0.365 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 951,639
Number of extensions: 43200
Number of successful extensions: 63
Number of sequences better than 10.0: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 9
Length of query: 267
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 183
Effective length of database: 1,254,276
Effective search space: 229532508
Effective search space used: 229532508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.1 bits)