BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1089
(404 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9NRZ9|HELLS_HUMAN Lymphoid-specific helicase OS=Homo sapiens GN=HELLS PE=1 SV=1
Length = 838
Score = 218 bits (555), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 127/354 (35%), Positives = 189/354 (53%), Gaps = 67/354 (18%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTIGENREQVAEYF 60
+H IL PF LRRLK DV L +PPK+ V+ P+ QE+ YT ++ +TI A F
Sbjct: 440 LHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTI-------ANMF 492
Query: 61 NTTVNTSSSSDSSGNESYIWFSEESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNK 120
+ SE+ T+ + + + +R R+ + +K
Sbjct: 493 GS-------------------SEKETIELSPTGRPKRR-------------TRKSINYSK 520
Query: 121 TYDL-TEIDRMFDSMIERDDTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEKNVDEILHH 179
D E++++ + D V+V ++P E
Sbjct: 521 IDDFPNELEKLISQIQPEVDRERAVVEV----------------NIPVESE--------- 555
Query: 180 VNVKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQ 239
VN+K+ N+ M+LR +HPYLI P V +E DE +V++SGK ++L+++L +LK+
Sbjct: 556 VNLKLQNIMMLLRKCCNHPYLIEYPIDPV--TQEFKIDEELVTNSGKFLILDRMLPELKK 613
Query: 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLS 299
HK L+FS M +L+ + + C L ++N+ RL GS+ ER + FN E +FL+S
Sbjct: 614 RGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVS 673
Query: 300 TRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHST 353
TRAGG G+NLTAADT I+YDSDWNPQ D+QA+ RCHRIGQTKPV +YRLV+ +T
Sbjct: 674 TRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANT 727
>sp|Q60848|HELLS_MOUSE Lymphocyte-specific helicase OS=Mus musculus GN=Hells PE=1 SV=2
Length = 821
Score = 215 bits (548), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 129/353 (36%), Positives = 190/353 (53%), Gaps = 65/353 (18%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTIGENREQVAEYF 60
+H IL PF LRRLK DV L +PPK+ V+ P+ QE+ YT ++ +TI A F
Sbjct: 423 LHQILTPFLLRRLKSDVALEVPPKREVVVYAPLCNKQEIFYTAIVNRTI-------ANMF 475
Query: 61 NTTVNTSSSSDSSGNESYIWFSEESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNK 120
+ + +G +PKRR K
Sbjct: 476 GSCEKETVELSPTG-----------------------------------RPKRRS---RK 497
Query: 121 TYDLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEKNVDEILHHV 180
+ + +E+D+ F S +E+ + Q++ ++ E N +P E V
Sbjct: 498 SINYSELDQ-FPSELEKLIS-----QIQPEVNRERTVVEGN---IPIESE---------V 539
Query: 181 NVKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQT 240
N+K+ N+ M+LR +HPY+I P V +E DE +V++SGK ++L+++L +LK+
Sbjct: 540 NLKLRNIMMLLRKCCNHPYMIEYPIDPV--TQEFKIDEELVTNSGKFLILDRMLPELKKR 597
Query: 241 NHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLST 300
HK LVFS M +L+ + + C L N+ + RL GS+ ER + FN + +FL+ST
Sbjct: 598 GHKVLVFSQMTSMLDILMDYCHLRNFIFSRLDGSMSYSEREKNIYSFNTDPDVFLFLVST 657
Query: 301 RAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHST 353
RAGG G+NLTAADT I+YDSDWNPQ D+QA+ RCHRIGQTKPV +YRLV+ +T
Sbjct: 658 RAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANT 710
>sp|Q9HCK8|CHD8_HUMAN Chromodomain-helicase-DNA-binding protein 8 OS=Homo sapiens GN=CHD8
PE=1 SV=5
Length = 2581
Score = 171 bits (433), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 83/191 (43%), Positives = 123/191 (64%), Gaps = 10/191 (5%)
Query: 179 HVNVK-MTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCD--------ENIVSSSGKMIV 229
H N+ + N M LR +HPYLIN + + C + +V S+GK+++
Sbjct: 1078 HTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFREACHIIPHDFHLQAMVRSAGKLVL 1137
Query: 230 LNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG 289
+++LL KLK HK L+FS MV+ L+ +E+ + Y Y R+ G +R R A+ +F+
Sbjct: 1138 IDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSK 1197
Query: 290 S-TEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRL 348
++ VFLL TRAGG G+NLTAADTCI++DSDWNPQ D+QA+ARCHRIGQ+K V +YRL
Sbjct: 1198 PDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRL 1257
Query: 349 VSHSTYQVHLF 359
++ ++Y+ +F
Sbjct: 1258 ITRNSYEREMF 1268
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+ ILKP LRRLK DV NL PK+ T+I+ + Q+ Y +L K
Sbjct: 1021 LQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEK 1067
>sp|Q09XV5|CHD8_MOUSE Chromodomain-helicase-DNA-binding protein 8 OS=Mus musculus GN=Chd8
PE=1 SV=1
Length = 2582
Score = 171 bits (432), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 83/191 (43%), Positives = 123/191 (64%), Gaps = 10/191 (5%)
Query: 179 HVNVK-MTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCD--------ENIVSSSGKMIV 229
H N+ + N M LR +HPYLIN + + C + +V S+GK+++
Sbjct: 1080 HTNMPNLLNTMMELRKCCNHPYLINGAEEKILMEFREACHIIPQDFHLQAMVRSAGKLVL 1139
Query: 230 LNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG 289
+++LL KLK HK L+FS MV+ L+ +E+ + Y Y R+ G +R R A+ +F+
Sbjct: 1140 IDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSK 1199
Query: 290 S-TEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRL 348
++ VFLL TRAGG G+NLTAADTCI++DSDWNPQ D+QA+ARCHRIGQ+K V +YRL
Sbjct: 1200 PDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRL 1259
Query: 349 VSHSTYQVHLF 359
++ ++Y+ +F
Sbjct: 1260 ITRNSYEREMF 1270
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+ ILKP LRRLK DV NL PK+ T+I+ + Q+ Y +L K
Sbjct: 1023 LQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEK 1069
>sp|Q9JIX5|CHD8_RAT Chromodomain-helicase-DNA-binding protein 8 OS=Rattus norvegicus
GN=Chd8 PE=1 SV=2
Length = 2581
Score = 171 bits (432), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 83/191 (43%), Positives = 123/191 (64%), Gaps = 10/191 (5%)
Query: 179 HVNVK-MTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCD--------ENIVSSSGKMIV 229
H N+ + N M LR +HPYLIN + + C + +V S+GK+++
Sbjct: 1078 HTNMPNLLNTMMELRKCCNHPYLINGAEEKILMEFREACHIIPQDFHLQAMVRSAGKLVL 1137
Query: 230 LNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG 289
+++LL KLK HK L+FS MV+ L+ +E+ + Y Y R+ G +R R A+ +F+
Sbjct: 1138 IDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSK 1197
Query: 290 S-TEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRL 348
++ VFLL TRAGG G+NLTAADTCI++DSDWNPQ D+QA+ARCHRIGQ+K V +YRL
Sbjct: 1198 PDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRL 1257
Query: 349 VSHSTYQVHLF 359
++ ++Y+ +F
Sbjct: 1258 ITRNSYEREMF 1268
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+ ILKP LRRLK DV NL PK+ T+I+ + Q+ Y +L K
Sbjct: 1021 LQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEK 1067
>sp|A2AJK6|CHD7_MOUSE Chromodomain-helicase-DNA-binding protein 7 OS=Mus musculus GN=Chd7
PE=1 SV=1
Length = 2986
Score = 169 bits (429), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 82/185 (44%), Positives = 124/185 (67%), Gaps = 9/185 (4%)
Query: 184 MTNVTMVLRNIISHPYLINKPY-RIVDGKKEMVCDEN-------IVSSSGKMIVLNQLLH 235
+ N M LR +HPYLIN +I++ KE E+ ++ ++GK++++++LL
Sbjct: 1231 LLNTMMELRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLIDKLLP 1290
Query: 236 KLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN-GSTEWG 294
KLK H+ L+FS MV+ L+ +E+ + Y Y R+ G +R R A+ +F+ ++
Sbjct: 1291 KLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRF 1350
Query: 295 VFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTY 354
VFLL TRAGG G+NLTAADTCI++DSDWNPQ D+QA+ARCHRIGQ+K V IYRL++ ++Y
Sbjct: 1351 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSY 1410
Query: 355 QVHLF 359
+ +F
Sbjct: 1411 EREMF 1415
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI-----GENREQ 55
+ ILKP LRRLK DV NL PK+ T+I+ + Q+ Y +L K G +
Sbjct: 1168 LQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLSKGGGQAN 1227
Query: 56 VAEYFNTTV 64
V NT +
Sbjct: 1228 VPNLLNTMM 1236
>sp|Q9P2D1|CHD7_HUMAN Chromodomain-helicase-DNA-binding protein 7 OS=Homo sapiens GN=CHD7
PE=1 SV=3
Length = 2997
Score = 169 bits (429), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 82/185 (44%), Positives = 124/185 (67%), Gaps = 9/185 (4%)
Query: 184 MTNVTMVLRNIISHPYLINKPY-RIVDGKKEMVCDEN-------IVSSSGKMIVLNQLLH 235
+ N M LR +HPYLIN +I++ KE E+ ++ ++GK++++++LL
Sbjct: 1241 LLNTMMELRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLIDKLLP 1300
Query: 236 KLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGS-TEWG 294
KLK H+ L+FS MV+ L+ +E+ + Y Y R+ G +R R A+ +F+ ++
Sbjct: 1301 KLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPDSDRF 1360
Query: 295 VFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTY 354
VFLL TRAGG G+NLTAADTCI++DSDWNPQ D+QA+ARCHRIGQ+K V IYRL++ ++Y
Sbjct: 1361 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITRNSY 1420
Query: 355 QVHLF 359
+ +F
Sbjct: 1421 EREMF 1425
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI-----GENREQ 55
+ ILKP LRRLK DV NL PK+ T+I+ + Q+ Y +L K G +
Sbjct: 1178 LQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLSKGGGQAN 1237
Query: 56 VAEYFNTTV 64
V NT +
Sbjct: 1238 VPNLLNTMM 1246
>sp|Q06A37|CHD7_CHICK Chromodomain-helicase-DNA-binding protein 7 OS=Gallus gallus GN=CHD7
PE=2 SV=1
Length = 3011
Score = 169 bits (428), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 122/192 (63%), Gaps = 23/192 (11%)
Query: 184 MTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDE---------------NIVSSSGKMI 228
+ N M LR +HPYLIN G +E + +E ++ ++GK++
Sbjct: 1242 LLNTMMELRKCCNHPYLIN-------GAEEKILEEFKETHNADSPDFQLQAMIQAAGKLV 1294
Query: 229 VLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN 288
++++LL KLK H+ L+FS MV+ L+ +E+ + Y Y R+ G +R R A+ +F+
Sbjct: 1295 LIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFS 1354
Query: 289 -GSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYR 347
++ VFLL TRAGG G+NLTAADTCI++DSDWNPQ D+QA+ARCHRIGQ+K V IYR
Sbjct: 1355 RPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYR 1414
Query: 348 LVSHSTYQVHLF 359
L++ ++Y+ +F
Sbjct: 1415 LITRNSYEREMF 1426
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI-----GENREQ 55
+ ILKP LRRLK DV NL PK+ T+I+ + Q+ Y +L K G +
Sbjct: 1179 LQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFAFLSKGGGQAN 1238
Query: 56 VAEYFNTTV 64
V NT +
Sbjct: 1239 VPNLLNTMM 1247
>sp|Q6PGB8|SMCA1_MOUSE Probable global transcription activator SNF2L1 OS=Mus musculus
GN=Smarca1 PE=1 SV=1
Length = 1046
Score = 168 bits (426), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 77/175 (44%), Positives = 116/175 (66%), Gaps = 5/175 (2%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTN 241
+++ N+ M LR +HPYL + + DE+IV +SGKM+ L++LL ++K+
Sbjct: 451 MRLLNILMQLRKCCNHPYLFDG----AEPGPPYTTDEHIVGNSGKMVALDKLLARIKEQG 506
Query: 242 HKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-STEWGVFLLST 300
+ L+FS M ++L+ +E+ C+ Y Y RL G +EER +A+ FN ++ +F+LST
Sbjct: 507 SRVLIFSQMTRLLDILEDYCMWRGYEYSRLDGQTPHEEREEAIDAFNAPNSSKFIFMLST 566
Query: 301 RAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
RAGG G+NL +AD ILYDSDWNPQVD+QA R HRIGQ KPV ++RL++ +T +
Sbjct: 567 RAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVE 621
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +LKPF LRR+K DV +LPPKK I + Q YTK+L K I
Sbjct: 391 LHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDI 439
>sp|Q8TD26|CHD6_HUMAN Chromodomain-helicase-DNA-binding protein 6 OS=Homo sapiens GN=CHD6
PE=1 SV=4
Length = 2715
Score = 168 bits (425), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 81/191 (42%), Positives = 121/191 (63%), Gaps = 9/191 (4%)
Query: 178 HHVNVKMTNVTMVLRNIISHPYLINKPYRIV--DGKKEMVCD------ENIVSSSGKMIV 229
H + N M LR +HPYLIN + D +K D + ++ ++GK+++
Sbjct: 728 QHNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVL 787
Query: 230 LNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQF-N 288
+++LL KL HK L+FS MV+ L+ +E+ + Y Y R+ G +R R A+ +F
Sbjct: 788 IDKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCK 847
Query: 289 GSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRL 348
++ VFLL TRAGG G+NLTAADTCI++DSDWNPQ D+QA+ARCHRIGQ+K V +YRL
Sbjct: 848 PDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRL 907
Query: 349 VSHSTYQVHLF 359
++ ++Y+ +F
Sbjct: 908 ITRNSYEREMF 918
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK-----TIGENREQ 55
+ +ILKP LRRLK DV NL PK+ T+I+ + Q+ Y +L K T G N+
Sbjct: 671 LQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLTKGANQHN 730
Query: 56 VAEYFNTTV 64
+ NT +
Sbjct: 731 MPNLINTMM 739
>sp|B5DE69|CHD8_XENTR Chromodomain-helicase-DNA-binding protein 8 OS=Xenopus tropicalis
GN=chd8 PE=2 SV=2
Length = 2184
Score = 168 bits (425), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 83/192 (43%), Positives = 120/192 (62%), Gaps = 23/192 (11%)
Query: 184 MTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDE---------------NIVSSSGKMI 228
+ N M LR +HPYLI G +E + E +V SSGK++
Sbjct: 1028 LLNTMMELRKCCNHPYLIT-------GAEEKIISEFREATPVVPPDFHVQAMVRSSGKLV 1080
Query: 229 VLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN 288
++++LL KL+ HK L+FS MV+ L+ +E+ + Y Y R+ G +R R A+ +F+
Sbjct: 1081 LIDKLLPKLRAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNMRQAAIDRFS 1140
Query: 289 -GSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYR 347
++ VFLL TRAGG G+NLTAADTCI++DSDWNPQ D+QA+ARCHRIGQ+K V IYR
Sbjct: 1141 RPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKIYR 1200
Query: 348 LVSHSTYQVHLF 359
L++ ++Y+ +F
Sbjct: 1201 LITRNSYEREMF 1212
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK-----TIGENREQ 55
+ ILKP LRRLK DV NL PK+ T+I+ + Q+ Y +L K T G ++
Sbjct: 965 LQAILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEKNFSFLTKGASQSN 1024
Query: 56 VAEYFNTTV 64
NT +
Sbjct: 1025 TPNLLNTMM 1033
>sp|P28370|SMCA1_HUMAN Probable global transcription activator SNF2L1 OS=Homo sapiens
GN=SMARCA1 PE=1 SV=2
Length = 1054
Score = 166 bits (421), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 119/187 (63%), Gaps = 17/187 (9%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTN 241
+++ N+ M LR +HPYL + + DE+IVS+SGKM+VL++LL KLK+
Sbjct: 447 MRLLNILMQLRKCCNHPYLFDG----AEPGPPYTTDEHIVSNSGKMVVLDKLLAKLKEQG 502
Query: 242 HKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERND------------AVQQFNG 289
+ L+FS M ++L+ +E+ C+ Y Y RL G +EER D A++ FN
Sbjct: 503 SRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAFNA 562
Query: 290 -STEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRL 348
++ +F+LSTRAGG G+NL +AD ILYDSDWNPQVD+QA R HRIGQ KPV ++RL
Sbjct: 563 PNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRL 622
Query: 349 VSHSTYQ 355
++ +T +
Sbjct: 623 ITDNTVE 629
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +LKPF LRR+K DV +LPPKK I + Q YTK+L K I
Sbjct: 387 LHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDI 435
>sp|B0R0I6|CHD8_DANRE Chromodomain-helicase-DNA-binding protein 8 OS=Danio rerio GN=chd8
PE=3 SV=2
Length = 2511
Score = 166 bits (420), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 79/185 (42%), Positives = 120/185 (64%), Gaps = 9/185 (4%)
Query: 184 MTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCD--------ENIVSSSGKMIVLNQLLH 235
+ N M LR +HPYLI + + V D + +V S+GK+++L++LL
Sbjct: 1121 LLNTMMELRKCCNHPYLITGAEEKIVSELREVYDPLAPDFHLQALVRSAGKLVLLDKLLP 1180
Query: 236 KLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-STEWG 294
+LK HK L+FS MV+ L+ +E+ + + Y Y R+ G +R R A+ +F+ ++
Sbjct: 1181 RLKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRF 1240
Query: 295 VFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTY 354
VFLL TRAGG G+NLTAADTC+++DSDWNPQ D+QA+ARCHRIGQ+K V +YRL++ ++Y
Sbjct: 1241 VFLLCTRAGGLGINLTAADTCVIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSY 1300
Query: 355 QVHLF 359
+ +
Sbjct: 1301 EREML 1305
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+ +ILKP LRRLK DV NL PK+ T+I+ + Q+ Y +L +
Sbjct: 1057 LQSILKPMMLRRLKEDVEKNLAPKQETIIEVELTDVQKKYYRAILER 1103
>sp|Q3L8U1|CHD9_HUMAN Chromodomain-helicase-DNA-binding protein 9 OS=Homo sapiens GN=CHD9
PE=1 SV=2
Length = 2897
Score = 166 bits (420), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 80/185 (43%), Positives = 120/185 (64%), Gaps = 9/185 (4%)
Query: 184 MTNVTMVLRNIISHPYLINKPYRIVDGK-----KEMVCD---ENIVSSSGKMIVLNQLLH 235
+ N M LR +HPYLI + G+ D + ++ S+GK++++++LL
Sbjct: 1133 LVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLIDKLLP 1192
Query: 236 KLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-STEWG 294
K+K HK L+FS MV+ L+ +E+ + + Y Y R+ G +R R A+ +F+ ++
Sbjct: 1193 KMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRF 1252
Query: 295 VFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTY 354
VFLL TRAGG G+NLTAADTCI++DSDWNPQ D+QA+ARCHRIGQ K V +YRLV+ ++Y
Sbjct: 1253 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVTRNSY 1312
Query: 355 QVHLF 359
+ +F
Sbjct: 1313 EREMF 1317
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+ ILKP LRRLK DV L PK+ T+I+ + Q+ Y +L K
Sbjct: 1070 LQAILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNF 1118
>sp|Q8BYH8|CHD9_MOUSE Chromodomain-helicase-DNA-binding protein 9 OS=Mus musculus GN=Chd9
PE=1 SV=2
Length = 2885
Score = 166 bits (419), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 120/192 (62%), Gaps = 23/192 (11%)
Query: 184 MTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDE---------------NIVSSSGKMI 228
+ N M LR +HPYLI G +E + E ++ S+GK++
Sbjct: 1132 LVNTMMELRKCCNHPYLIK-------GAEEKILGEFRDTYNPSASDFHLQAMIQSAGKLV 1184
Query: 229 VLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN 288
++++LL K+K HK L+FS MV+ L+ +E+ + + Y Y R+ G +R R A+ +F+
Sbjct: 1185 LIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFS 1244
Query: 289 GS-TEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYR 347
++ VFLL TRAGG G+NLTAADTCI++DSDWNPQ D+QA+ARCHRIGQ K V +YR
Sbjct: 1245 KPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYR 1304
Query: 348 LVSHSTYQVHLF 359
LV+ ++Y+ +F
Sbjct: 1305 LVTRNSYEREMF 1316
Score = 40.8 bits (94), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+ ILKP LRRLK DV L PK+ T+I+ + Q+ Y +L K
Sbjct: 1069 LQAILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNF 1117
>sp|O60264|SMCA5_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A member 5 OS=Homo sapiens
GN=SMARCA5 PE=1 SV=1
Length = 1052
Score = 165 bits (417), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 80/176 (45%), Positives = 118/176 (67%), Gaps = 7/176 (3%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTN 241
+++ N+ M LR +HPYL + + D ++V++SGKM+VL++LL KLK+
Sbjct: 444 MRLLNILMQLRKCCNHPYLFDG----AEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQG 499
Query: 242 HKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLS 299
+ L+FS M +VL+ +E+ C+ NY Y RL G ++ER D++ +N ST++ VF+LS
Sbjct: 500 SRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKF-VFMLS 558
Query: 300 TRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
TRAGG G+NL AD ILYDSDWNPQVD+QA R HRIGQTK V ++R ++ +T +
Sbjct: 559 TRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVE 614
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +L+PF LRR+K DV +LPPKK I + Q YT++L K I
Sbjct: 384 LHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDI 432
>sp|Q91ZW3|SMCA5_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A member 5 OS=Mus musculus
GN=Smarca5 PE=1 SV=1
Length = 1051
Score = 165 bits (417), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 80/176 (45%), Positives = 118/176 (67%), Gaps = 7/176 (3%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTN 241
+++ N+ M LR +HPYL + + D ++V++SGKM+VL++LL KLK+
Sbjct: 443 MRLLNILMQLRKCCNHPYLFDG----AEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQG 498
Query: 242 HKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLS 299
+ L+FS M +VL+ +E+ C+ NY Y RL G ++ER D++ +N ST++ VF+LS
Sbjct: 499 SRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKF-VFMLS 557
Query: 300 TRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
TRAGG G+NL AD ILYDSDWNPQVD+QA R HRIGQTK V ++R ++ +T +
Sbjct: 558 TRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVE 613
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +L+PF LRR+K DV +LPPKK I + Q YT++L K I
Sbjct: 383 LHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDI 431
>sp|Q08773|ISW2_YEAST ISWI chromatin-remodeling complex ATPase ISW2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ISW2 PE=1
SV=1
Length = 1120
Score = 162 bits (409), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 81/195 (41%), Positives = 121/195 (62%), Gaps = 20/195 (10%)
Query: 170 EKNVDEILHHVN-----VKMTNVTMVLRNIISHPYLI-----NKPYRIVDGKKEMVCDEN 219
EK++D + V ++ N+ M LR +HPYL PY DE+
Sbjct: 434 EKDIDAVNGAVGKREGKTRLLNIVMQLRKCCNHPYLFEGAEPGPPY---------TTDEH 484
Query: 220 IVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEE 279
++ +SGKMI+L++LL +LK+ + L+FS M ++L+ +E+ C ++ Y R+ GS +EE
Sbjct: 485 LIFNSGKMIILDKLLKRLKEKGSRVLIFSQMSRLLDILEDYCYFRDFEYCRIDGSTSHEE 544
Query: 280 RNDAVQQFNG-STEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIG 338
R +A+ ++N ++E VFLL+TRAGG G+NL ADT IL+DSDWNPQ D+QA R HRIG
Sbjct: 545 RIEAIDEYNKPNSEKFVFLLTTRAGGLGINLVTADTVILFDSDWNPQADLQAMDRAHRIG 604
Query: 339 QTKPVCIYRLVSHST 353
Q K V +YR V+ +
Sbjct: 605 QKKQVHVYRFVTENA 619
Score = 40.0 bits (92), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H++L PF LRR+K DV +L PK T + M Q Y +L K I
Sbjct: 389 LHSVLNPFLLRRVKADVEKSLLPKIETNVYVGMTDMQIQWYKSLLEKDI 437
>sp|Q24368|ISWI_DROME Chromatin-remodeling complex ATPase chain Iswi OS=Drosophila
melanogaster GN=Iswi PE=1 SV=1
Length = 1027
Score = 160 bits (406), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 78/180 (43%), Positives = 116/180 (64%), Gaps = 15/180 (8%)
Query: 182 VKMTNVTMVLRNIISHPYLIN-----KPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHK 236
+++ N+ M LR +HPYL + PY D ++V +SGKM +L++LL K
Sbjct: 392 MRLQNILMQLRKCTNHPYLFDGAEPGPPY---------TTDTHLVYNSGKMAILDKLLPK 442
Query: 237 LKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN-GSTEWGV 295
L++ + L+FS M ++L+ +E+ C NYNY RL G +E+RN +Q+FN ++ +
Sbjct: 443 LQEQGSRVLIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHEDRNRQIQEFNMDNSAKFL 502
Query: 296 FLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
F+LSTRAGG G+NL AD I+YDSDWNPQ+D+QA R HRIGQ K V ++RL++ ST +
Sbjct: 503 FMLSTRAGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITESTVE 562
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 28/49 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +LKPF LRRLK +V L PKK I + Q YTKVL K I
Sbjct: 332 LHAVLKPFLLRRLKAEVEKRLKPKKEMKIFVGLSKMQRDWYTKVLLKDI 380
>sp|P43610|IRC5_YEAST Uncharacterized ATP-dependent helicase IRC5 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=IRC5 PE=3
SV=2
Length = 853
Score = 158 bits (399), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 79/181 (43%), Positives = 113/181 (62%), Gaps = 5/181 (2%)
Query: 181 NVKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQT 240
N K+ N+ M LR II +L PY E + E ++ +SGK+ +L +L+ L
Sbjct: 563 NKKLQNMMMQLRQIIDSTFLFYFPYL----HPEDLTLETLLKTSGKLQILQKLIPPLISE 618
Query: 241 NHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTE-WGVFLLS 299
HK L++S V +L+ IE+ C L ++ +R+ GS+ NE R D +++FN S + +FLLS
Sbjct: 619 GHKVLIYSQFVNMLDLIEDWCDLNSFATFRIDGSVNNETRKDQLEKFNSSKDKHNIFLLS 678
Query: 300 TRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLF 359
TRA G G+NL ADT +L+DSDWNPQVD+QA RCHRIGQ PV +YRL +T + +
Sbjct: 679 TRAAGLGINLVGADTVVLFDSDWNPQVDLQAMDRCHRIGQESPVIVYRLCCDNTIEHVIL 738
Query: 360 T 360
T
Sbjct: 739 T 739
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 1 MHNILKPFFLRRLKCDVNLN-LPPKKTTVIDCPMVPAQELMYTKVLTKTIGEN--REQVA 57
+H ILKPF LRRLK V N LPPK+ +I+CPM AQE Y L + + +E +
Sbjct: 445 LHTILKPFLLRRLKKVVLANILPPKREYIINCPMTSAQEKFYKAGLNGKLKKTMFKELIK 504
Query: 58 EYF 60
++F
Sbjct: 505 DFF 507
>sp|P41877|ISW1_CAEEL Chromatin-remodeling complex ATPase chain isw-1 OS=Caenorhabditis
elegans GN=isw-1 PE=1 SV=2
Length = 1009
Score = 157 bits (398), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 114/173 (65%), Gaps = 5/173 (2%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTN 241
++ N+ M LR ++HPYL + + D+++V +SGKM+VL++LL K K+
Sbjct: 396 ARLMNILMHLRKCVNHPYLFDG----AEPGPPFTTDQHLVDNSGKMVVLDKLLMKFKEQG 451
Query: 242 HKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-STEWGVFLLST 300
+ L+FS ++L+ +E+ C +Y Y RL GS +E+R++A++ +N ++ +F+L+T
Sbjct: 452 SRVLIFSQFSRMLDLLEDFCWWRHYEYCRLDGSTPHEDRSNAIEAYNAPDSKKFIFMLTT 511
Query: 301 RAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHST 353
RAGG G+NL AD I+YDSDWNPQ D+QA R HRIGQ K V ++RL++ +T
Sbjct: 512 RAGGLGINLATADVVIIYDSDWNPQSDLQAMDRAHRIGQKKQVRVFRLITENT 564
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +L+PF LRR+K DV +L PKK + + Q YTKVL K I
Sbjct: 336 LHKVLQPFLLRRIKSDVEKSLLPKKEVKVYVGLSKMQREWYTKVLMKDI 384
>sp|G5EBZ4|LE418_CAEEL Protein let-418 OS=Caenorhabditis elegans GN=let-418 PE=1 SV=1
Length = 1829
Score = 157 bits (396), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 76/182 (41%), Positives = 111/182 (60%), Gaps = 2/182 (1%)
Query: 182 VKMTNVTMVLRNIISHPYLINKP-YRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQT 240
+ + NV M L+ +HPYL K K M ++ +SGK ++L ++L KLK
Sbjct: 882 MSLMNVLMELKKCCNHPYLFVKAELEAPKEKNGMYEGTALIKNSGKFVLLQKMLRKLKDG 941
Query: 241 NHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-STEWGVFLLS 299
H+ L+FS M ++L+ +E+LC E Y Y R+ GSI + R DA+ ++N + +FLLS
Sbjct: 942 GHRVLIFSQMTRMLDIMEDLCEYEGYRYERIDGSIMGQMRQDAIDRYNAPGAQQFIFLLS 1001
Query: 300 TRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLF 359
TRAGG G+NL ADT I+YDSDWNP DIQA +R HR+GQ V IYR V+ + + +
Sbjct: 1002 TRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKKSVEEKIT 1061
Query: 360 TI 361
++
Sbjct: 1062 SV 1063
Score = 40.0 bits (92), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+HN+L P LRRLK DV +P K ++ + Q+ Y +LT+
Sbjct: 822 LHNLLGPHMLRRLKADVLTGMPSKSELIVRVELSAMQKKWYKNILTRNF 870
>sp|Q22516|CHD3_CAEEL Chromodomain-helicase-DNA-binding protein 3 homolog OS=Caenorhabditis
elegans GN=chd-3 PE=2 SV=2
Length = 1787
Score = 155 bits (392), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 75/183 (40%), Positives = 114/183 (62%), Gaps = 4/183 (2%)
Query: 182 VKMTNVTMVLRNIISHPYLINKP-YRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQT 240
+ + N+ M L+ +HPYL K K M ++ ++GK ++L ++L KLK
Sbjct: 896 MSLINIIMELKKCCNHPYLFMKACLEAPKLKNGMYEGSALIKNAGKFVLLQKMLRKLKDG 955
Query: 241 NHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLL 298
H+ L+FS M +L+ +E+ C +E Y Y R+ GSI ++R DA+ ++N G+ ++ VFLL
Sbjct: 956 GHRVLIFSQMTMMLDILEDFCDVEGYKYERIDGSITGQQRQDAIDRYNAPGAKQF-VFLL 1014
Query: 299 STRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHL 358
STRAGG G+NL ADT I+YDSDWNP DIQA +R HR+GQ V IYR V+ + + +
Sbjct: 1015 STRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKGSVEERI 1074
Query: 359 FTI 361
++
Sbjct: 1075 TSV 1077
Score = 40.8 bits (94), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+HN+L P LRRLK DV +P K+ ++ + Q+ Y +LT+
Sbjct: 836 LHNLLGPHMLRRLKADVLTGMPSKQELIVRVELSAMQKKYYKNILTRNF 884
>sp|Q9US25|HRP1_SCHPO Chromodomain helicase hrp1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=hrp1 PE=1 SV=1
Length = 1373
Score = 154 bits (390), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/178 (43%), Positives = 110/178 (61%), Gaps = 4/178 (2%)
Query: 182 VKMTNVTMVLRNIISHPYLI-NKPYRIVDGKKEMVCD--ENIVSSSGKMIVLNQLLHKLK 238
+ + N+ + L+ + +HPYL + + G+K D I+ +SGKM++L++LL +LK
Sbjct: 658 LSLLNIVVELKKVSNHPYLFPGAAEKWMMGRKMTREDTLRGIIMNSGKMVLLDKLLQRLK 717
Query: 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWG-VFL 297
H+ L+FS MV++LN + E L YNY RL G+I R ++ FN VFL
Sbjct: 718 HDGHRVLIFSQMVRMLNILGEYMSLRGYNYQRLDGTIPASVRRVSIDHFNAPDSPDFVFL 777
Query: 298 LSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
LSTRAGG G+NL ADT I++DSDWNPQ D+QA AR HRIGQ V +YR +S T +
Sbjct: 778 LSTRAGGLGINLNTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVNVYRFLSKDTVE 835
Score = 37.4 bits (85), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 5 LKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
L+PF LRRLK DV +LP K ++ + Q Y +LTK
Sbjct: 601 LQPFILRRLKKDVEKSLPSKSERILRVELSDMQTEWYKNILTK 643
>sp|O14647|CHD2_HUMAN Chromodomain-helicase-DNA-binding protein 2 OS=Homo sapiens GN=CHD2
PE=1 SV=2
Length = 1828
Score = 154 bits (389), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 78/171 (45%), Positives = 118/171 (69%), Gaps = 6/171 (3%)
Query: 186 NVTMVLRNIISHPYLINKPYR-IVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKT 244
N+ M L+ +H YLI P + +E++ +++ SSGK+I+L++LL +L++ ++
Sbjct: 753 NIVMELKKCCNHCYLIKPPEENERENGQEILL--SLIRSSGKLILLDKLLTRLRERGNRV 810
Query: 245 LVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLSTRA 302
L+FS MV++L+ + E +++Y + RL GSI+ E R A+ FN GS ++ FLLSTRA
Sbjct: 811 LIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDF-CFLLSTRA 869
Query: 303 GGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHST 353
GG G+NL +ADT +++DSDWNPQ D+QA+AR HRIGQ K V IYRLV+ T
Sbjct: 870 GGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGT 920
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H +L+PF LRR+K DV +LP K ++ M Q+ Y +LT+
Sbjct: 689 LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTR 735
>sp|Q7ZU90|CHD1L_DANRE Chromodomain-helicase-DNA-binding protein 1-like OS=Danio rerio
GN=chd1l PE=2 SV=1
Length = 1026
Score = 153 bits (386), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 75/175 (42%), Positives = 113/175 (64%), Gaps = 14/175 (8%)
Query: 183 KMTNVTMVLRNIISHPYLIN----KPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLK 238
++ NV M LR + HPYL + +P+ + E++V +SGK+ +L+ +L L+
Sbjct: 299 RLLNVLMQLRKCVDHPYLFDGVEPEPFEM---------GEHLVEASGKLSLLDSMLAYLQ 349
Query: 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLL 298
+ H L+FS M ++L+ +++ Y+Y RL GS+R EERN A++ F+ + + +FLL
Sbjct: 350 EGGHHVLLFSQMTRMLDILQDYLEYRGYSYERLDGSVRGEERNLAIKNFS-TKDVFIFLL 408
Query: 299 STRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHST 353
ST+AGG G+NLTAADT I D D+NPQ D+QA AR HRIGQT+PV + RL+ T
Sbjct: 409 STKAGGVGMNLTAADTVIFVDGDFNPQNDLQAAARAHRIGQTRPVKVIRLLGRDT 463
Score = 38.9 bits (89), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTIGENR 53
+H +L+PF LRR+K +V LP K V+ + Q+ Y +L + + R
Sbjct: 239 LHQVLQPFLLRRVKAEVAAELPKKTELVVFHGLSALQKRYYKAILMRDLDAFR 291
>sp|O16102|CHD3_DROME Chromodomain-helicase-DNA-binding protein 3 OS=Drosophila
melanogaster GN=Chd3 PE=2 SV=3
Length = 892
Score = 151 bits (381), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 78/183 (42%), Positives = 112/183 (61%), Gaps = 8/183 (4%)
Query: 184 MTNVTMVLRNIISHPYLINKPYRIV----DGKKEMVCDENIVSSSGKMIVLNQLLHKLKQ 239
+ N+ M LR +HPYL G EM ++ +SGK+ +L+++L +LK
Sbjct: 544 LLNIMMDLRKCCNHPYLFPSAAEEATISPSGLYEM---SSLTKASGKLDLLSKMLKQLKA 600
Query: 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGS-TEWGVFLL 298
NH+ L+FS M K+LN +E E Y Y R+ GSI+ + R A+ +FN +E VFLL
Sbjct: 601 DNHRVLLFSQMTKMLNVLEHFLEGEGYQYDRIDGSIKGDLRQKAIDRFNDPVSEHFVFLL 660
Query: 299 STRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHL 358
STRAGG G+NL ADT I++DSDWNP D+QA +R HR+GQ K V IYR V+H++ + +
Sbjct: 661 STRAGGLGINLATADTVIIFDSDWNPHNDVQAFSRAHRMGQKKKVMIYRFVTHNSVEERI 720
Query: 359 FTI 361
+
Sbjct: 721 MQV 723
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTIGENREQVAEYF 60
+H IL+P LRRLK DV ++PPK ++ + Q+ Y +LTK ++
Sbjct: 482 LHEILEPHMLRRLKADVLKSMPPKSEFIVRVELSSMQKKFYKHILTKNFKALNQKGGGRV 541
Query: 61 NTTVNTSSSSDSSGNESYIWFS--EESTLS 88
+ +N N Y++ S EE+T+S
Sbjct: 542 CSLLNIMMDLRKCCNHPYLFPSAAEEATIS 571
>sp|P32657|CHD1_YEAST Chromo domain-containing protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CHD1 PE=1 SV=1
Length = 1468
Score = 150 bits (380), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 79/181 (43%), Positives = 118/181 (65%), Gaps = 11/181 (6%)
Query: 184 MTNVTMVLRNIISHPYLI-NKPYRIV----DGK--KEMVCDENIVSSSGKMIVLNQLLHK 236
+ N+ L+ +HPYL N R++ DGK +E V ++ SSGKM++L+QLL +
Sbjct: 648 LLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVL-RGLIMSSGKMVLLDQLLTR 706
Query: 237 LKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG--STEWG 294
LK+ H+ L+FS MV++L+ + + ++ N+ RL G++ + +R ++ FN S ++
Sbjct: 707 LKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDF- 765
Query: 295 VFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTY 354
VFLLSTRAGG G+NL ADT +++DSDWNPQ D+QA AR HRIGQ V +YRLVS T
Sbjct: 766 VFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTV 825
Query: 355 Q 355
+
Sbjct: 826 E 826
Score = 39.3 bits (90), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H ++PF LRRLK DV +LP K ++ + Q Y +LTK
Sbjct: 586 LHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTK 632
>sp|Q3B7N1|CHD1L_BOVIN Chromodomain-helicase-DNA-binding protein 1-like OS=Bos taurus
GN=CHD1L PE=2 SV=1
Length = 897
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 77/179 (43%), Positives = 111/179 (62%), Gaps = 14/179 (7%)
Query: 181 NVKMTNVTMVLRNIISHPYLIN----KPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHK 236
VK+ NV LR + HPYL + +P+ I D +++ +SGK+ +L++LL
Sbjct: 310 KVKLQNVLSQLRKCVDHPYLFDGVEPEPFEIGD---------HLIEASGKLHLLDKLLAF 360
Query: 237 LKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVF 296
L H+ L+FS M ++L+ +++ Y+Y R+ GS+R EER+ A++ F G F
Sbjct: 361 LYSKGHRVLLFSQMTQMLDILQDYLDYRGYSYERVDGSVRGEERHLAIKNF-GQQPIFTF 419
Query: 297 LLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
LLSTRAGG G+NLTAADT I +DSD+NPQ D+QA AR HRIGQ K V + RL+ T +
Sbjct: 420 LLSTRAGGVGMNLTAADTVIFFDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVE 478
Score = 38.5 bits (88), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
++ +L+PF LRR+K +V LP K VI M Q+ Y +L K +
Sbjct: 252 LYKLLQPFLLRRVKAEVATELPRKTEVVIYHGMSALQKKYYKAILMKDL 300
>sp|Q8TDI0|CHD5_HUMAN Chromodomain-helicase-DNA-binding protein 5 OS=Homo sapiens GN=CHD5
PE=2 SV=1
Length = 1954
Score = 149 bits (377), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 77/179 (43%), Positives = 110/179 (61%), Gaps = 8/179 (4%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGK---KEMVCDENIVSSSGKMIVLNQLLHKLK 238
V + N+ M L+ +HPYL P V+ ++V SSGK+++L ++L KL+
Sbjct: 980 VSLLNIMMDLKKCCNHPYLF--PVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLR 1037
Query: 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVF 296
H+ L+FS M K+L+ +E+ E Y Y R+ G I R +A+ +FN G+ ++ F
Sbjct: 1038 DEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQF-CF 1096
Query: 297 LLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
LLSTRAGG G+NL ADT I+YDSDWNP DIQA +R HRIGQ K V IYR V+ ++ +
Sbjct: 1097 LLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE 1155
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H++L P LRRLK DV N+P K ++ + Q+ Y +LT+
Sbjct: 920 LHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTRNF 968
>sp|Q9ULG1|INO80_HUMAN DNA helicase INO80 OS=Homo sapiens GN=INO80 PE=1 SV=2
Length = 1556
Score = 149 bits (377), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 76/178 (42%), Positives = 103/178 (57%), Gaps = 12/178 (6%)
Query: 218 ENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRN 277
E++++ SGK+ L+ LL +LK H+ L++S M ++++ +EE V + Y RL GS +
Sbjct: 1094 ESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKI 1153
Query: 278 EERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRI 337
ER D V F + VFLLSTRAGG G+NLTAADT I YDSDWNP VD QA R HR+
Sbjct: 1154 SERRDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRL 1213
Query: 338 GQTKPVCIYRLVSHSTYQVHLFTIDSSGSVSWSSQSVKEKLPIGFMCVTGSFLKSSSF 395
GQTK V +YRL+ T + + Q KEK I M ++G K +
Sbjct: 1214 GQTKQVTVYRLICKGTIEERIL------------QRAKEKSEIQRMVISGGNFKPDTL 1259
Score = 39.3 bits (90), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H ILKPF LRR+K DV L K ++ C + Q+L+Y + K
Sbjct: 735 LHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNK 781
>sp|Q6ZPV2|INO80_MOUSE DNA helicase INO80 OS=Mus musculus GN=Ino80 PE=2 SV=2
Length = 1559
Score = 149 bits (375), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 76/174 (43%), Positives = 102/174 (58%), Gaps = 12/174 (6%)
Query: 218 ENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRN 277
E++++ SGK+ L+ LL +LK H+ L++S M ++++ +EE V + Y RL GS +
Sbjct: 1097 ESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKI 1156
Query: 278 EERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRI 337
ER D V F + VFLLSTRAGG G+NLTAADT I YDSDWNP VD QA R HR+
Sbjct: 1157 SERRDMVADFQTRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRL 1216
Query: 338 GQTKPVCIYRLVSHSTYQVHLFTIDSSGSVSWSSQSVKEKLPIGFMCVTGSFLK 391
GQTK V +YRL+ T + + Q KEK I M ++G K
Sbjct: 1217 GQTKQVTVYRLICKGTIEERIL------------QRAKEKSEIQRMVISGGNFK 1258
Score = 38.5 bits (88), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H ILKPF LRR+K DV L K + C + Q+L+Y + K
Sbjct: 737 LHMILKPFMLRRIKKDVENELSDKIEILTYCQLTSRQKLLYQALKNK 783
>sp|Q1DUF9|INO80_COCIM Putative DNA helicase INO80 OS=Coccidioides immitis (strain RS)
GN=INO80 PE=3 SV=1
Length = 1662
Score = 149 bits (375), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 68/136 (50%), Positives = 90/136 (66%)
Query: 220 IVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEE 279
V+ SGK+ L++LL +LK H+ L++ M ++++ +EE NY Y RL GS + E+
Sbjct: 1375 FVTDSGKLAKLDELLRELKNGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLED 1434
Query: 280 RNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQ 339
R D V F E VFLLSTRAGG G+NLTAADT I YDSDWNP +D QA R HR+GQ
Sbjct: 1435 RRDTVSDFQQRPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQ 1494
Query: 340 TKPVCIYRLVSHSTYQ 355
TK V +YRL++ T +
Sbjct: 1495 TKQVTVYRLITRGTIE 1510
>sp|Q12873|CHD3_HUMAN Chromodomain-helicase-DNA-binding protein 3 OS=Homo sapiens GN=CHD3
PE=1 SV=3
Length = 2000
Score = 148 bits (374), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 76/181 (41%), Positives = 112/181 (61%), Gaps = 12/181 (6%)
Query: 182 VKMTNVTMVLRNIISHPYL-----INKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHK 236
V + N+ M L+ +HPYL + P ++ G E ++ SSGK+++L ++L K
Sbjct: 1016 VSLLNIMMDLKKCCNHPYLFPVAAMESP-KLPSGAYEGGA---LIKSSGKLMLLQKMLRK 1071
Query: 237 LKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWG 294
LK+ H+ L+FS M K+L+ +E+ E Y Y R+ G I R +A+ +FN G+ ++
Sbjct: 1072 LKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQF- 1130
Query: 295 VFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTY 354
FLLSTRAGG G+NL ADT I++DSDWNP DIQA +R HRIGQ V IYR V+ ++
Sbjct: 1131 CFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASV 1190
Query: 355 Q 355
+
Sbjct: 1191 E 1191
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H++L P LRRLK DV N+P K ++ + P Q+ Y +LT+
Sbjct: 956 LHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTRNF 1004
>sp|Q4WTV7|INO80_ASPFU Putative DNA helicase ino80 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=ino80 PE=3
SV=1
Length = 1708
Score = 148 bits (374), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 68/143 (47%), Positives = 92/143 (64%)
Query: 213 EMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLH 272
E+ V+ SGK+ L++LL +LK H+ L++ M ++++ +EE NY Y RL
Sbjct: 1406 EVPSMRRFVTDSGKLAKLDELLRELKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLD 1465
Query: 273 GSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEA 332
GS + E+R D V F E VFLLSTRAGG G+NLTAADT I YDSDWNP +D QA
Sbjct: 1466 GSTKLEDRRDTVADFQQRPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMD 1525
Query: 333 RCHRIGQTKPVCIYRLVSHSTYQ 355
R HR+GQT+ V +YRL++ T +
Sbjct: 1526 RAHRLGQTRQVTVYRLITRGTIE 1548
>sp|A1CZE5|INO80_NEOFI Putative DNA helicase ino80 OS=Neosartorya fischeri (strain ATCC 1020
/ DSM 3700 / FGSC A1164 / NRRL 181) GN=ino80 PE=3 SV=1
Length = 1708
Score = 148 bits (374), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 91/141 (64%)
Query: 213 EMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLH 272
E+ V+ SGK+ L++LL +LK H+ L++ M ++++ +EE NY Y RL
Sbjct: 1406 EVPSMRRFVTDSGKLAKLDELLRELKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLD 1465
Query: 273 GSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEA 332
GS + E+R D V F E VFLLSTRAGG G+NLTAADT I YDSDWNP +D QA
Sbjct: 1466 GSTKLEDRRDTVADFQQRPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMD 1525
Query: 333 RCHRIGQTKPVCIYRLVSHST 353
R HR+GQT+ V +YRL++ T
Sbjct: 1526 RAHRLGQTRQVTVYRLITRGT 1546
>sp|Q2UTQ9|INO80_ASPOR Putative DNA helicase ino80 OS=Aspergillus oryzae (strain ATCC 42149
/ RIB 40) GN=ino80 PE=3 SV=1
Length = 1444
Score = 148 bits (373), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 73/173 (42%), Positives = 102/173 (58%), Gaps = 4/173 (2%)
Query: 183 KMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNH 242
K+ + L ++ P I Y + E+ V+ SGK+ L++LL +LK H
Sbjct: 1178 KLDPIPYSLPPMLPQPISIKGRYTHI----EVPSMRRFVTDSGKLAKLDELLRELKAGGH 1233
Query: 243 KTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRA 302
+ L++ M ++++ +EE NY Y RL GS + E+R D V F E VFLLSTRA
Sbjct: 1234 RVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRDTVADFQQRPEIFVFLLSTRA 1293
Query: 303 GGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
GG G+NLTAADT I YDSDWNP +D QA R HR+GQT+ V +YRL++ T +
Sbjct: 1294 GGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRGTIE 1346
Score = 32.3 bits (72), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 21/42 (50%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYT 42
+H ILKPF LRR+K V L K + C + Q YT
Sbjct: 851 LHMILKPFMLRRVKKHVQQELGDKVEKDVFCDLTYRQRAYYT 892
>sp|Q872I5|INO80_NEUCR Putative DNA helicase ino-80 OS=Neurospora crassa (strain ATCC 24698
/ 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=ino-80 PE=3 SV=3
Length = 1997
Score = 148 bits (373), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 66/139 (47%), Positives = 92/139 (66%)
Query: 220 IVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEE 279
V+ SGK+ L++LL +LK+ H+ L++ M ++++ +EE NY Y RL GS + E+
Sbjct: 1693 FVTDSGKLAKLDELLRELKENGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLED 1752
Query: 280 RNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQ 339
R D V F E +FLLSTRAGG G+NLT+ADT I YDSDWNP +D QA R HR+GQ
Sbjct: 1753 RRDTVADFQTRPEIFIFLLSTRAGGLGINLTSADTVIFYDSDWNPTIDSQAMDRAHRLGQ 1812
Query: 340 TKPVCIYRLVSHSTYQVHL 358
TK V +YRL++ T + +
Sbjct: 1813 TKQVTVYRLITRGTIEERI 1831
Score = 32.3 bits (72), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKV 44
+H ILKPF LRR+K V L K + C + Q MY +
Sbjct: 1336 LHMILKPFMLRRVKKHVQKELGDKIEMDVFCDLTYRQRAMYANL 1379
>sp|Q9CXF7|CHD1L_MOUSE Chromodomain-helicase-DNA-binding protein 1-like OS=Mus musculus
GN=Chd1l PE=2 SV=1
Length = 900
Score = 148 bits (373), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 111/179 (62%), Gaps = 14/179 (7%)
Query: 181 NVKMTNVTMVLRNIISHPYLIN----KPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHK 236
VK+ N+ LR + HPYL + +P+ + E+++ +SGK+ +L++LL
Sbjct: 302 KVKLQNILTQLRKCVDHPYLFDGVEPEPFEV---------GEHLIEASGKLHLLDRLLAF 352
Query: 237 LKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVF 296
L H+ L+FS M +L+ +++ Y+Y R+ GS+R EER+ A++ F G+ VF
Sbjct: 353 LYSGGHRVLLFSQMTHMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNF-GNQPIFVF 411
Query: 297 LLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
LLSTRAGG G+NLTAADT I DSD+NPQ D+QA AR HRIGQ K V + RL+ T +
Sbjct: 412 LLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVE 470
Score = 39.7 bits (91), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +L+PF LRR+K V LP K V+ M Q+ Y +L K +
Sbjct: 244 LHRLLQPFLLRRVKAQVATELPKKTEVVVYHGMSALQKKYYKAILMKDL 292
>sp|Q86WJ1|CHD1L_HUMAN Chromodomain-helicase-DNA-binding protein 1-like OS=Homo sapiens
GN=CHD1L PE=1 SV=2
Length = 897
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 110/179 (61%), Gaps = 14/179 (7%)
Query: 181 NVKMTNVTMVLRNIISHPYLIN----KPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHK 236
VK+ N+ LR + HPYL + +P+ + D ++ +SGK+ +L++LL
Sbjct: 308 KVKLQNILSQLRKCVDHPYLFDGVEPEPFEVGD---------HLTEASGKLHLLDKLLAF 358
Query: 237 LKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVF 296
L H+ L+FS M ++L+ +++ Y+Y R+ GS+R EER+ A++ F G VF
Sbjct: 359 LYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNF-GQQPIFVF 417
Query: 297 LLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
LLSTRAGG G+NLTAADT I DSD+NPQ D+QA AR HRIGQ K V + RL+ T +
Sbjct: 418 LLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVE 476
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +L+PF LRR+K +V LP K VI M Q+ Y +L K +
Sbjct: 250 LHKLLQPFLLRRVKAEVATELPKKTEVVIYHGMSALQKKYYKAILMKDL 298
>sp|A7EQA8|INO80_SCLS1 Putative DNA helicase INO80 OS=Sclerotinia sclerotiorum (strain ATCC
18683 / 1980 / Ss-1) GN=INO80 PE=3 SV=1
Length = 1707
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 90/136 (66%)
Query: 220 IVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEE 279
V+ SGK+ L+ LL KLK+ H+ L++ M ++++ +EE NY Y RL GS + E+
Sbjct: 1417 FVTDSGKLAKLDSLLTKLKEGGHRVLLYFQMTRMIDLMEEYLTYRNYKYLRLDGSTKLED 1476
Query: 280 RNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQ 339
R D V F E +FLLSTRAGG G+NLT+ADT I YDSDWNP +D QA R HR+GQ
Sbjct: 1477 RRDTVHDFQTRPEIFIFLLSTRAGGLGINLTSADTVIFYDSDWNPTIDSQAMDRAHRLGQ 1536
Query: 340 TKPVCIYRLVSHSTYQ 355
T+ V +YR+++ T +
Sbjct: 1537 TRQVTVYRMITRGTIE 1552
>sp|O97159|CHDM_DROME Chromodomain-helicase-DNA-binding protein Mi-2 homolog OS=Drosophila
melanogaster GN=Mi-2 PE=1 SV=2
Length = 1982
Score = 147 bits (371), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 109/175 (62%), Gaps = 4/175 (2%)
Query: 184 MTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDEN-IVSSSGKMIVLNQLLHKLKQTNH 242
+ N+ M L+ +HPYL + + N + ++GK+++L+++L +LK NH
Sbjct: 1010 LINIMMDLKKCCNHPYLFPSAAEEATTAAGGLYEINSLTKAAGKLVLLSKMLKQLKAQNH 1069
Query: 243 KTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLST 300
+ L+FS M K+L+ +E+ E Y Y R+ G I R +A+ +FN G+ ++ VFLLST
Sbjct: 1070 RVLIFSQMTKMLDILEDFLEGEQYKYERIDGGITGTLRQEAIDRFNAPGAQQF-VFLLST 1128
Query: 301 RAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
RAGG G+NL ADT I+YDSDWNP DIQA +R HRIGQ V IYR V+ ++ +
Sbjct: 1129 RAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVE 1183
Score = 38.9 bits (89), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H +L P LRRLK DV N+P K ++ + Q+ Y +LTK
Sbjct: 948 LHEMLGPHMLRRLKTDVLKNMPSKSEFIVRVELSAMQKKFYKFILTK 994
>sp|Q9VDY1|INO80_DROME Putative DNA helicase Ino80 OS=Drosophila melanogaster GN=Ino80 PE=1
SV=2
Length = 1638
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 74/178 (41%), Positives = 101/178 (56%), Gaps = 12/178 (6%)
Query: 218 ENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRN 277
E +++ +GK+ VL+ LL +LK H+ L++S M K+++ +EE + Y RL GS +
Sbjct: 1149 ETLITDAGKLFVLDNLLTRLKANGHRVLIYSQMTKMIDLLEEYMWHRKHRYMRLDGSSKI 1208
Query: 278 EERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRI 337
R D V F + VFLLSTRAGG G+NLTAADT I YDSDWNP VD QA R HR+
Sbjct: 1209 SARRDMVADFQTRADIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRL 1268
Query: 338 GQTKPVCIYRLVSHSTYQVHLFTIDSSGSVSWSSQSVKEKLPIGFMCVTGSFLKSSSF 395
GQTK V +YRL+ T + + Q +EK I M ++G K +
Sbjct: 1269 GQTKQVTVYRLICKGTIEERIL------------QRAREKSEIQRMVISGGNFKPDTL 1314
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H ILKPF LRR+K DV L K ++ CP+ Q+L+Y + K
Sbjct: 752 LHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTIRQKLLYRALKQK 798
>sp|A1C9W6|INO80_ASPCL Putative DNA helicase ino80 OS=Aspergillus clavatus (strain ATCC 1007
/ CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=ino80
PE=3 SV=1
Length = 1707
Score = 146 bits (369), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 91/141 (64%)
Query: 213 EMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLH 272
E+ V+ SGK+ L++LL +LK H+ L++ M ++++ +EE NY Y RL
Sbjct: 1407 EVPSMRRFVTDSGKLAKLDELLRELKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLD 1466
Query: 273 GSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEA 332
GS + E+R D V F + VFLLSTRAGG G+NLTAADT I YDSDWNP +D QA
Sbjct: 1467 GSTKLEDRRDTVADFQQRPDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMD 1526
Query: 333 RCHRIGQTKPVCIYRLVSHST 353
R HR+GQT+ V +YRL++ T
Sbjct: 1527 RAHRLGQTRQVTVYRLITRGT 1547
>sp|Q7KU24|CHD1_DROME Chromodomain-helicase-DNA-binding protein 1 OS=Drosophila
melanogaster GN=Chd1 PE=1 SV=1
Length = 1883
Score = 145 bits (367), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 110/167 (65%), Gaps = 3/167 (1%)
Query: 186 NVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTL 245
N+ + L+ +H LI + G ++ + ++ SGK+++L++LL +LK+T H+ L
Sbjct: 797 NIVIELKKCCNHAALIRPSEFELMGLQQDEALQTLLKGSGKLVLLDKLLCRLKETGHRVL 856
Query: 246 VFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLSTRAG 303
+FS MV++L+ + + ++ + RL GSI+ E R A+ FN GS ++ FLLSTRAG
Sbjct: 857 IFSQMVRMLDVLADYLQKRHFPFQRLDGSIKGEMRRQALDHFNAEGSQDF-CFLLSTRAG 915
Query: 304 GQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVS 350
G G+NL ADT I++DSDWNPQ D+QA+AR HRIGQ V IYRLV+
Sbjct: 916 GLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVT 962
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H L+P+ LRR+K DV +LP K ++ M Q+ Y +LTK
Sbjct: 733 LHQQLEPYILRRVKKDVEKSLPAKVEQILRVEMTSLQKQYYKWILTKNF 781
>sp|Q9S775|PKL_ARATH CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis
thaliana GN=PKL PE=1 SV=1
Length = 1384
Score = 145 bits (366), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 109/183 (59%), Gaps = 3/183 (1%)
Query: 180 VNVKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQ 239
+ + N+ M LR + HPY++ ++ E + ++ S GK+ +L++++ KLK+
Sbjct: 552 AQISLNNIMMELRKVCCHPYMLEGVEPVIHDANEAF--KQLLESCGKLQLLDKMMVKLKE 609
Query: 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-STEWGVFLL 298
H+ L+++ +L+ +E+ C + + Y R+ G + ER + +FN ++ FLL
Sbjct: 610 QGHRVLIYTQFQHMLDLLEDYCTHKKWQYERIDGKVGGAERQIRIDRFNAKNSNKFCFLL 669
Query: 299 STRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHL 358
STRAGG G+NL ADT I+YDSDWNP D+QA AR HR+GQT V IYRL++ T + +
Sbjct: 670 STRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLINRGTIEERM 729
Query: 359 FTI 361
+
Sbjct: 730 MQL 732
Score = 40.0 bits (92), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H +L P LRR+K DV ++PPKK ++ + Q+ Y + T+
Sbjct: 495 LHKMLAPHLLRRVKKDVMKDMPPKKELILRVDLSSLQKEYYKAIFTR 541
>sp|Q9NDJ2|DOM_DROME Helicase domino OS=Drosophila melanogaster GN=dom PE=1 SV=2
Length = 3198
Score = 145 bits (365), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 66/135 (48%), Positives = 91/135 (67%)
Query: 225 GKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAV 284
GK+ +++LL +LK H+ L+F+ M K+L+ +E + Y RL GS R E+R +
Sbjct: 1658 GKLQTMDRLLRQLKVNGHRVLIFTQMTKMLDVLEAFLNYHGHIYLRLDGSTRVEQRQILM 1717
Query: 285 QQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVC 344
++FNG F+LSTR+GG G+NLT ADT I YDSDWNP +D QA+ RCHRIGQT+ V
Sbjct: 1718 ERFNGDKRIFCFILSTRSGGVGINLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRDVH 1777
Query: 345 IYRLVSHSTYQVHLF 359
IYRLVS T +V++
Sbjct: 1778 IYRLVSERTIEVNIL 1792
Score = 39.3 bits (90), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H +++PF LRRLK +V +P K VI C + Q +Y +++
Sbjct: 1125 LHKVIRPFLLRRLKKEVEKQMPKKYEHVITCRLSNRQRYLYEDFMSR 1171
>sp|Q0CA78|INO80_ASPTN Putative DNA helicase ino80 OS=Aspergillus terreus (strain NIH 2624 /
FGSC A1156) GN=ino80 PE=3 SV=1
Length = 1690
Score = 144 bits (363), Expect = 1e-33, Method: Composition-based stats.
Identities = 74/163 (45%), Positives = 102/163 (62%), Gaps = 4/163 (2%)
Query: 196 SHPYLINKPYRIVDGKK---EMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVK 252
SHP ++ KP + G+ E+ V+ SGK+ L++LL +LK H+ L++ M +
Sbjct: 1368 SHPPMLPKPTSL-KGRYTHIEVPSMRRFVTDSGKLAKLDELLRELKAGGHRVLLYFQMTR 1426
Query: 253 VLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAA 312
+++ +EE NY Y RL GS + E+R D V F E VFLLSTRAGG G+NLTAA
Sbjct: 1427 MIDLMEEYLTYRNYKYCRLDGSTKLEDRRDTVADFQQRPEIFVFLLSTRAGGLGINLTAA 1486
Query: 313 DTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
DT I YDSDWNP +D QA R HR+GQT+ V +YRL++ T +
Sbjct: 1487 DTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRLITRGTIE 1529
>sp|A5E0W5|INO80_LODEL Putative DNA helicase ino80 OS=Lodderomyces elongisporus (strain ATCC
11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239)
GN=INO80 PE=3 SV=1
Length = 1575
Score = 144 bits (362), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 65/145 (44%), Positives = 96/145 (66%)
Query: 214 MVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHG 273
M + ++ SGK+ L++LL KLKQ +H+ L++ M K+++ +EE + + Y RL G
Sbjct: 1300 MPSMDRFITESGKLAKLDELLVKLKQEDHRVLIYFQMTKMMDLMEEYLTFKQHKYIRLDG 1359
Query: 274 SIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEAR 333
S + ++R D V + E VFLLSTRAGG G+NLTAADT + YDSDWNP +D QA R
Sbjct: 1360 SSKLDDRRDLVHDWQTKPEIFVFLLSTRAGGLGINLTAADTVVFYDSDWNPTIDSQAMDR 1419
Query: 334 CHRIGQTKPVCIYRLVSHSTYQVHL 358
HR+GQT+ V +YRL++ +T + +
Sbjct: 1420 AHRLGQTRQVTVYRLLTRNTIEERM 1444
>sp|A4R227|INO80_MAGO7 Putative DNA helicase INO80 OS=Magnaporthe oryzae (strain 70-15 /
ATCC MYA-4617 / FGSC 8958) GN=INO80 PE=3 SV=1
Length = 1944
Score = 144 bits (362), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 64/136 (47%), Positives = 91/136 (66%)
Query: 220 IVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEE 279
+++SGK+ L++LL KLK H+ L++ M ++++ +EE N+ Y RL GS + E+
Sbjct: 1654 FITNSGKLAKLDELLFKLKAGGHRVLLYFQMTRMIDLMEEYLTYRNWKYCRLDGSTKFED 1713
Query: 280 RNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQ 339
R D V F + VFLLSTRAGG G+NLT+ADT I YDSDWNP +D QA R HR+GQ
Sbjct: 1714 RRDTVHDFQTNPSIFVFLLSTRAGGLGINLTSADTVIFYDSDWNPTIDSQAMDRAHRLGQ 1773
Query: 340 TKPVCIYRLVSHSTYQ 355
T+ V +YRL++ T +
Sbjct: 1774 TRQVTVYRLITRGTIE 1789
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 140,757,504
Number of Sequences: 539616
Number of extensions: 5571995
Number of successful extensions: 18694
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 383
Number of HSP's that attempted gapping in prelim test: 17771
Number of HSP's gapped (non-prelim): 1092
length of query: 404
length of database: 191,569,459
effective HSP length: 120
effective length of query: 284
effective length of database: 126,815,539
effective search space: 36015613076
effective search space used: 36015613076
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)