Query psy1089
Match_columns 404
No_of_seqs 244 out of 2472
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 21:03:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1089.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1089hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0385|consensus 100.0 4.9E-56 1.1E-60 451.1 21.5 241 1-366 372-613 (971)
2 KOG0384|consensus 100.0 3.6E-56 7.9E-61 470.0 14.9 257 1-385 576-837 (1373)
3 KOG0389|consensus 100.0 2E-50 4.3E-55 411.5 22.2 284 2-366 617-902 (941)
4 KOG0387|consensus 100.0 2E-48 4.4E-53 397.3 20.3 240 1-367 432-673 (923)
5 KOG0392|consensus 100.0 1.3E-47 2.8E-52 403.7 16.4 278 1-402 1195-1494(1549)
6 PLN03142 Probable chromatin-re 100.0 1.3E-46 2.9E-51 408.3 23.5 240 1-367 374-614 (1033)
7 KOG0391|consensus 100.0 4.5E-44 9.8E-49 373.6 18.8 173 223-402 1258-1430(1958)
8 KOG0386|consensus 100.0 4.8E-42 1E-46 357.4 13.7 243 1-366 609-852 (1157)
9 KOG0388|consensus 100.0 1.8E-41 4E-46 341.5 16.3 146 220-366 1023-1168(1185)
10 KOG0390|consensus 100.0 2.4E-39 5.1E-44 338.2 19.9 239 1-366 470-721 (776)
11 COG0553 HepA Superfamily II DN 100.0 3.4E-36 7.3E-41 330.6 20.1 280 1-402 565-863 (866)
12 KOG1002|consensus 100.0 3.9E-36 8.4E-41 293.7 17.7 249 2-366 436-763 (791)
13 KOG1015|consensus 100.0 8.5E-36 1.8E-40 307.5 17.3 146 222-367 1123-1292(1567)
14 KOG4439|consensus 100.0 1.4E-34 3E-39 292.6 22.7 215 178-402 644-899 (901)
15 KOG1000|consensus 100.0 5.4E-30 1.2E-34 251.0 15.2 145 225-369 472-620 (689)
16 KOG1016|consensus 99.9 1.8E-28 3.9E-33 249.5 7.6 147 220-366 698-863 (1387)
17 KOG1001|consensus 99.9 4.1E-28 8.9E-33 254.8 6.9 143 224-366 521-664 (674)
18 PRK04914 ATP-dependent helicas 99.9 1.4E-24 3.1E-29 235.9 20.3 141 223-366 477-619 (956)
19 KOG0383|consensus 99.9 1.4E-22 3.1E-27 210.9 8.8 180 1-306 516-696 (696)
20 cd00079 HELICc Helicase superf 99.7 1.9E-17 4.1E-22 139.8 11.6 120 225-346 12-131 (131)
21 PRK13766 Hef nuclease; Provisi 99.7 2.1E-17 4.6E-22 180.3 14.4 143 222-369 344-496 (773)
22 KOG0331|consensus 99.7 1.1E-16 2.4E-21 162.2 13.0 149 193-343 291-441 (519)
23 KOG0328|consensus 99.7 4E-16 8.7E-21 144.6 12.6 163 187-355 214-376 (400)
24 TIGR00603 rad25 DNA repair hel 99.7 1.2E-15 2.6E-20 161.7 15.7 134 222-361 477-616 (732)
25 KOG0333|consensus 99.7 9E-16 1.9E-20 152.5 12.7 156 191-353 470-625 (673)
26 PTZ00110 helicase; Provisional 99.6 3.7E-15 8.1E-20 156.2 16.6 130 220-353 356-485 (545)
27 KOG0330|consensus 99.6 1.9E-15 4.1E-20 145.7 12.6 136 220-363 281-416 (476)
28 PF00271 Helicase_C: Helicase 99.6 1E-15 2.3E-20 118.4 7.0 78 259-338 1-78 (78)
29 COG1111 MPH1 ERCC4-like helica 99.6 5.6E-15 1.2E-19 147.1 13.2 146 224-374 347-503 (542)
30 COG0513 SrmB Superfamily II DN 99.6 9.8E-15 2.1E-19 151.8 15.3 168 190-364 222-391 (513)
31 PRK04837 ATP-dependent RNA hel 99.6 2.4E-14 5.1E-19 145.9 13.7 124 223-352 239-362 (423)
32 PRK11192 ATP-dependent RNA hel 99.6 6.1E-14 1.3E-18 143.3 15.5 118 224-345 230-347 (434)
33 PRK01297 ATP-dependent RNA hel 99.5 9.4E-14 2E-18 143.6 16.3 126 221-352 317-442 (475)
34 PRK11776 ATP-dependent RNA hel 99.5 1E-13 2.2E-18 142.7 15.3 126 221-352 224-349 (460)
35 PRK04537 ATP-dependent RNA hel 99.5 1.1E-13 2.4E-18 145.7 15.4 124 222-351 240-363 (572)
36 PLN00206 DEAD-box ATP-dependen 99.5 9.4E-14 2E-18 145.0 14.1 129 221-353 347-476 (518)
37 PRK10590 ATP-dependent RNA hel 99.5 2.5E-13 5.4E-18 139.7 14.7 134 222-363 228-361 (456)
38 smart00490 HELICc helicase sup 99.5 8.8E-14 1.9E-18 107.4 8.1 81 256-338 2-82 (82)
39 TIGR00614 recQ_fam ATP-depende 99.5 3.4E-13 7.3E-18 139.3 13.8 118 226-346 212-329 (470)
40 KOG0326|consensus 99.5 7.5E-14 1.6E-18 131.6 8.0 183 189-393 274-456 (459)
41 KOG0341|consensus 99.5 1.7E-13 3.7E-18 132.0 10.1 162 192-361 376-537 (610)
42 PRK11634 ATP-dependent RNA hel 99.5 7.5E-13 1.6E-17 140.6 15.6 119 220-342 226-344 (629)
43 PF11496 HDA2-3: Class II hist 99.5 1.8E-12 3.9E-17 125.2 16.8 181 182-365 54-258 (297)
44 PHA02558 uvsW UvsW helicase; P 99.5 7.9E-13 1.7E-17 137.5 14.4 132 221-353 324-456 (501)
45 KOG0298|consensus 99.4 7E-14 1.5E-18 150.8 6.1 139 223-367 1201-1341(1394)
46 PRK11057 ATP-dependent DNA hel 99.4 1.4E-12 3E-17 138.6 14.6 115 225-343 222-336 (607)
47 KOG0332|consensus 99.4 1.4E-12 3E-17 125.4 13.0 128 223-355 314-447 (477)
48 TIGR01389 recQ ATP-dependent D 99.4 1.6E-12 3.4E-17 138.0 13.7 119 222-344 207-325 (591)
49 PTZ00424 helicase 45; Provisio 99.4 2.9E-12 6.3E-17 129.4 13.9 124 226-355 254-377 (401)
50 KOG0335|consensus 99.4 2.1E-12 4.6E-17 129.4 11.2 149 213-363 302-457 (482)
51 PLN03137 ATP-dependent DNA hel 99.4 3E-12 6.5E-17 139.9 13.0 105 241-347 680-784 (1195)
52 KOG0336|consensus 99.4 3.4E-12 7.3E-17 124.0 10.9 127 221-352 446-572 (629)
53 KOG4284|consensus 99.4 3.4E-12 7.5E-17 129.8 11.3 160 185-351 211-379 (980)
54 PRK12898 secA preprotein trans 99.4 1.9E-11 4.1E-16 128.6 17.3 134 221-363 453-594 (656)
55 KOG0342|consensus 99.4 3.8E-12 8.2E-17 126.3 11.3 128 219-351 309-436 (543)
56 KOG0340|consensus 99.3 1E-11 2.2E-16 118.9 12.7 124 217-342 229-353 (442)
57 KOG0345|consensus 99.3 9.7E-12 2.1E-16 122.8 12.1 152 191-346 206-360 (567)
58 TIGR03817 DECH_helic helicase/ 99.3 1.5E-11 3.3E-16 133.1 13.7 125 232-360 262-394 (742)
59 PRK09200 preprotein translocas 99.3 2E-11 4.3E-16 131.0 14.4 133 221-362 408-548 (790)
60 KOG0348|consensus 99.3 5.8E-11 1.3E-15 118.9 15.5 119 224-344 404-548 (708)
61 KOG0343|consensus 99.3 5.3E-11 1.2E-15 119.5 14.1 168 192-366 265-435 (758)
62 KOG0346|consensus 99.3 3.7E-11 8.1E-16 117.8 12.3 162 185-351 212-409 (569)
63 TIGR00963 secA preprotein tran 99.2 1.3E-10 2.8E-15 123.2 15.3 152 188-346 354-513 (745)
64 TIGR01587 cas3_core CRISPR-ass 99.2 1.2E-10 2.5E-15 116.1 14.2 132 224-361 206-350 (358)
65 TIGR03714 secA2 accessory Sec 99.2 1.1E-10 2.4E-15 124.4 13.9 131 221-361 404-543 (762)
66 COG1061 SSL2 DNA or RNA helica 99.2 4.2E-10 9.1E-15 115.2 17.6 136 224-363 267-405 (442)
67 KOG0327|consensus 99.2 5.4E-11 1.2E-15 115.2 10.0 160 191-361 218-377 (397)
68 KOG0344|consensus 99.2 1.1E-10 2.5E-15 118.2 12.4 120 223-346 371-492 (593)
69 PRK12906 secA preprotein trans 99.2 3.3E-10 7.1E-15 121.2 14.4 121 222-346 421-549 (796)
70 TIGR00631 uvrb excinuclease AB 99.2 3.2E-10 7E-15 120.8 14.2 126 223-353 424-554 (655)
71 KOG0334|consensus 99.2 4E-10 8.6E-15 120.9 14.6 124 223-351 596-719 (997)
72 PRK13767 ATP-dependent helicas 99.2 3.3E-10 7.3E-15 125.0 14.4 118 228-347 271-395 (876)
73 KOG0350|consensus 99.2 2E-10 4.4E-15 114.3 11.2 136 226-369 416-555 (620)
74 KOG0339|consensus 99.1 3.3E-10 7.1E-15 112.9 11.5 166 184-355 411-578 (731)
75 KOG0338|consensus 99.1 4E-10 8.7E-15 112.4 11.5 127 226-360 413-539 (691)
76 PRK05298 excinuclease ABC subu 99.1 7.1E-10 1.5E-14 118.7 14.4 124 224-352 429-557 (652)
77 COG0514 RecQ Superfamily II DN 99.1 9.6E-10 2.1E-14 114.0 13.0 112 239-354 228-339 (590)
78 TIGR02621 cas3_GSU0051 CRISPR- 99.1 8.7E-10 1.9E-14 118.8 13.2 118 226-348 256-390 (844)
79 KOG1123|consensus 99.1 1.7E-09 3.7E-14 107.8 13.3 130 221-356 523-657 (776)
80 PRK10689 transcription-repair 99.1 2.7E-09 5.8E-14 119.9 15.9 165 232-401 801-978 (1147)
81 TIGR00580 mfd transcription-re 99.0 1.5E-09 3.3E-14 119.4 13.2 110 238-351 657-769 (926)
82 PRK12900 secA preprotein trans 99.0 2E-09 4.3E-14 116.3 12.8 130 223-361 580-717 (1025)
83 PRK10917 ATP-dependent DNA hel 99.0 3.3E-09 7.2E-14 114.3 14.0 117 225-343 455-582 (681)
84 KOG0347|consensus 99.0 3.7E-10 8E-15 113.6 6.1 103 240-345 462-564 (731)
85 TIGR00643 recG ATP-dependent D 99.0 6.7E-09 1.5E-13 111.0 15.7 116 227-344 434-560 (630)
86 TIGR01970 DEAH_box_HrpB ATP-de 98.9 4.5E-09 9.8E-14 114.5 11.6 108 240-352 208-336 (819)
87 PRK02362 ski2-like helicase; P 98.9 9.5E-09 2.1E-13 111.9 13.9 117 233-351 235-396 (737)
88 KOG0354|consensus 98.9 3.7E-08 8.1E-13 103.8 17.0 130 224-361 394-536 (746)
89 PHA02653 RNA helicase NPH-II; 98.9 1.1E-08 2.4E-13 109.1 12.7 109 240-355 394-517 (675)
90 PRK13104 secA preprotein trans 98.9 3.8E-08 8.3E-13 106.2 15.9 132 221-361 424-593 (896)
91 KOG0337|consensus 98.9 3.7E-09 7.9E-14 103.6 7.3 167 189-362 211-377 (529)
92 PRK12904 preprotein translocas 98.9 4.3E-08 9.2E-13 105.6 15.3 162 188-361 379-579 (830)
93 PRK11664 ATP-dependent RNA hel 98.8 1E-08 2.2E-13 111.8 10.4 108 240-352 211-339 (812)
94 PRK09751 putative ATP-dependen 98.8 2.3E-08 5E-13 113.7 13.3 97 239-337 242-371 (1490)
95 PRK13107 preprotein translocas 98.8 7.6E-08 1.7E-12 103.7 16.3 132 221-361 429-597 (908)
96 PRK01172 ski2-like helicase; P 98.8 8.8E-08 1.9E-12 103.4 14.7 112 230-344 225-370 (674)
97 KOG0349|consensus 98.8 1.8E-08 3.9E-13 99.0 8.4 97 240-338 504-603 (725)
98 COG1202 Superfamily II helicas 98.8 2.7E-08 5.9E-13 100.9 9.4 182 182-365 357-575 (830)
99 PRK00254 ski2-like helicase; P 98.7 8.6E-08 1.9E-12 104.2 12.5 121 231-353 228-389 (720)
100 TIGR01967 DEAH_box_HrpA ATP-de 98.6 2E-07 4.2E-12 104.9 11.8 122 226-354 263-406 (1283)
101 KOG0351|consensus 98.6 1.4E-07 3E-12 103.3 10.0 110 239-350 483-592 (941)
102 TIGR03158 cas3_cyano CRISPR-as 98.6 2.7E-07 5.8E-12 92.2 10.2 100 225-335 251-357 (357)
103 PF00176 SNF2_N: SNF2 family N 98.5 3.6E-08 7.8E-13 95.0 3.1 48 1-48 217-264 (299)
104 PRK11448 hsdR type I restricti 98.5 8.3E-07 1.8E-11 99.8 13.0 106 241-349 698-815 (1123)
105 PRK09694 helicase Cas3; Provis 98.5 1.4E-06 3E-11 95.5 12.5 106 232-340 551-665 (878)
106 PRK11131 ATP-dependent RNA hel 98.4 1.2E-06 2.5E-11 98.6 11.6 120 228-354 272-413 (1294)
107 PRK09401 reverse gyrase; Revie 98.4 1.1E-06 2.4E-11 99.3 10.7 104 225-337 315-431 (1176)
108 KOG0352|consensus 98.4 6.8E-07 1.5E-11 88.0 7.8 103 243-347 257-359 (641)
109 COG1201 Lhr Lhr-like helicases 98.4 1.2E-06 2.6E-11 94.4 10.3 126 228-358 240-366 (814)
110 PF13871 Helicase_C_4: Helicas 98.3 3.2E-06 6.8E-11 80.7 8.8 96 282-379 52-155 (278)
111 TIGR01054 rgy reverse gyrase. 98.2 6.8E-06 1.5E-10 93.1 11.0 90 226-323 314-410 (1171)
112 PRK14701 reverse gyrase; Provi 98.2 6.1E-06 1.3E-10 95.8 10.2 104 228-340 320-446 (1638)
113 PRK12903 secA preprotein trans 98.2 2E-05 4.3E-10 84.9 13.0 134 221-363 406-547 (925)
114 TIGR00595 priA primosomal prot 98.2 1.5E-05 3.3E-10 83.1 11.6 93 254-348 271-379 (505)
115 KOG0953|consensus 98.1 1.1E-05 2.3E-10 82.2 9.8 115 225-342 340-466 (700)
116 PRK12326 preprotein translocas 98.1 4.8E-05 1E-09 80.8 13.8 166 188-364 376-556 (764)
117 PRK05580 primosome assembly pr 98.0 8.6E-05 1.9E-09 80.2 13.8 94 253-348 438-547 (679)
118 COG0556 UvrB Helicase subunit 97.9 0.0002 4.3E-09 73.0 13.2 135 224-361 429-568 (663)
119 TIGR00596 rad1 DNA repair prot 97.9 3.6E-05 7.8E-10 83.9 8.0 58 313-373 478-535 (814)
120 PRK12901 secA preprotein trans 97.8 0.00024 5.2E-09 77.9 12.8 132 221-361 608-747 (1112)
121 COG1203 CRISPR-associated heli 97.8 0.00015 3.2E-09 79.1 11.1 132 231-365 430-565 (733)
122 PRK12899 secA preprotein trans 97.8 0.00023 5E-09 77.6 12.3 131 223-362 550-688 (970)
123 PRK13103 secA preprotein trans 97.8 0.00028 6.1E-09 76.8 12.8 162 189-361 399-597 (913)
124 KOG0353|consensus 97.7 0.00013 2.8E-09 71.2 8.2 119 228-348 302-465 (695)
125 KOG0329|consensus 97.6 4.4E-05 9.5E-10 70.9 3.9 112 191-341 235-346 (387)
126 COG1205 Distinct helicase fami 97.5 0.00045 9.8E-09 76.2 10.3 133 225-361 290-431 (851)
127 COG1200 RecG RecG-like helicas 97.5 0.00072 1.6E-08 71.1 11.1 117 225-343 457-584 (677)
128 COG4098 comFA Superfamily II D 97.3 0.0034 7.3E-08 61.1 12.5 121 229-353 293-417 (441)
129 CHL00122 secA preprotein trans 97.2 0.0048 1E-07 67.2 13.8 117 188-310 373-491 (870)
130 KOG4150|consensus 97.2 0.0026 5.7E-08 65.3 10.9 114 223-338 507-628 (1034)
131 COG1204 Superfamily II helicas 97.0 0.0055 1.2E-07 66.9 11.8 113 226-340 238-396 (766)
132 TIGR00348 hsdR type I site-spe 97.0 0.012 2.6E-07 63.7 13.7 108 241-350 514-649 (667)
133 COG1197 Mfd Transcription-repa 96.8 0.014 3.1E-07 65.0 13.2 115 232-351 795-912 (1139)
134 PF13307 Helicase_C_2: Helicas 96.7 0.0085 1.9E-07 53.2 8.2 80 238-323 6-93 (167)
135 COG4096 HsdR Type I site-speci 96.5 0.015 3.2E-07 62.6 10.2 106 242-349 427-545 (875)
136 KOG0952|consensus 96.4 0.031 6.7E-07 61.4 11.9 119 235-355 343-494 (1230)
137 TIGR01407 dinG_rel DnaQ family 96.4 0.023 5.1E-07 63.2 11.4 110 229-343 661-807 (850)
138 PRK12902 secA preprotein trans 96.3 0.071 1.5E-06 58.5 13.6 116 189-310 389-506 (939)
139 PF06862 DUF1253: Protein of u 96.3 0.082 1.8E-06 54.0 13.4 127 224-351 280-414 (442)
140 KOG0922|consensus 96.3 0.018 3.9E-07 60.5 8.8 113 239-354 256-392 (674)
141 COG1643 HrpA HrpA-like helicas 96.1 0.019 4E-07 63.1 8.3 124 229-355 246-390 (845)
142 KOG0950|consensus 96.0 0.017 3.8E-07 62.8 7.4 99 239-339 458-598 (1008)
143 COG0653 SecA Preprotein transl 95.9 0.057 1.2E-06 58.7 11.0 135 221-364 409-554 (822)
144 KOG0951|consensus 95.9 0.041 8.8E-07 61.6 9.7 71 266-338 608-688 (1674)
145 COG1199 DinG Rad3-related DNA 95.8 0.093 2E-06 56.7 12.1 114 228-345 465-612 (654)
146 PRK08074 bifunctional ATP-depe 95.2 0.15 3.2E-06 57.5 11.4 94 228-323 738-836 (928)
147 PRK11747 dinG ATP-dependent DN 95.1 0.21 4.5E-06 54.5 11.8 91 227-323 520-617 (697)
148 PRK07246 bifunctional ATP-depe 94.6 0.37 8.1E-06 53.5 12.4 90 229-323 635-726 (820)
149 KOG0924|consensus 94.6 0.045 9.7E-07 57.8 4.7 119 240-361 562-706 (1042)
150 TIGR00604 rad3 DNA repair heli 94.5 0.39 8.4E-06 52.5 12.3 94 228-322 508-615 (705)
151 COG4889 Predicted helicase [Ge 93.6 0.26 5.6E-06 53.7 8.3 83 267-349 501-585 (1518)
152 PF02399 Herpes_ori_bp: Origin 93.4 0.53 1.1E-05 51.3 10.3 112 226-347 268-385 (824)
153 KOG0949|consensus 93.4 0.13 2.8E-06 56.5 5.6 70 270-341 967-1037(1330)
154 smart00492 HELICc3 helicase su 92.9 0.7 1.5E-05 39.8 8.7 46 277-323 33-80 (141)
155 COG1110 Reverse gyrase [DNA re 92.6 0.56 1.2E-05 52.0 9.2 88 225-321 322-416 (1187)
156 KOG1513|consensus 92.5 0.13 2.9E-06 55.1 4.2 76 284-361 850-933 (1300)
157 TIGR00595 priA primosomal prot 92.5 1.2 2.6E-05 46.7 11.3 96 221-319 5-101 (505)
158 KOG0948|consensus 92.3 0.34 7.4E-06 51.9 6.7 127 230-359 371-545 (1041)
159 PRK10917 ATP-dependent DNA hel 92.0 1.2 2.6E-05 48.5 10.9 95 222-317 291-389 (681)
160 PRK05580 primosome assembly pr 91.8 1.7 3.7E-05 47.3 11.8 96 221-319 170-266 (679)
161 smart00491 HELICc2 helicase su 91.7 0.71 1.5E-05 39.8 7.2 45 279-323 32-81 (142)
162 KOG0926|consensus 91.2 0.15 3.3E-06 54.9 2.9 78 268-351 607-703 (1172)
163 COG1198 PriA Primosomal protei 91.2 0.8 1.7E-05 49.8 8.4 95 254-350 493-603 (730)
164 COG1198 PriA Primosomal protei 91.2 1.6 3.5E-05 47.5 10.7 78 221-299 225-303 (730)
165 KOG0947|consensus 90.9 2.9 6.3E-05 46.3 12.1 122 229-353 554-723 (1248)
166 KOG0920|consensus 90.7 0.72 1.6E-05 51.1 7.5 126 225-355 395-547 (924)
167 KOG0923|consensus 89.5 1 2.2E-05 47.8 7.1 108 239-352 471-606 (902)
168 TIGR03117 cas_csf4 CRISPR-asso 89.4 3.8 8.2E-05 44.1 11.5 96 230-328 458-567 (636)
169 TIGR00643 recG ATP-dependent D 89.4 2.3 5.1E-05 45.8 10.2 95 222-317 265-363 (630)
170 PRK14873 primosome assembly pr 87.0 4.3 9.3E-05 44.0 10.3 132 223-357 170-308 (665)
171 TIGR00580 mfd transcription-re 86.3 5 0.00011 45.3 10.6 96 222-318 481-580 (926)
172 PRK10689 transcription-repair 81.7 9.7 0.00021 44.0 10.6 95 222-317 630-728 (1147)
173 COG1200 RecG RecG-like helicas 80.1 13 0.00028 40.0 10.0 162 223-396 293-460 (677)
174 KOG0298|consensus 79.6 1.5 3.2E-05 49.7 3.1 54 2-55 593-648 (1394)
175 PF10593 Z1: Z1 domain; Inter 78.7 6.2 0.00013 37.2 6.6 98 249-355 95-195 (239)
176 KOG2340|consensus 76.9 19 0.00042 37.6 9.8 128 223-351 532-667 (698)
177 KOG0925|consensus 75.5 25 0.00055 36.5 10.1 124 226-355 236-390 (699)
178 TIGR00614 recQ_fam ATP-depende 72.0 30 0.00066 35.8 10.3 95 221-319 34-135 (470)
179 PRK14701 reverse gyrase; Provi 70.4 25 0.00053 42.3 10.1 81 221-302 102-188 (1638)
180 cd03418 GRX_GRXb_1_3_like Glut 68.0 32 0.0007 25.1 7.2 59 243-301 1-60 (75)
181 COG2204 AtoC Response regulato 67.6 97 0.0021 32.2 12.5 213 183-404 108-356 (464)
182 PF08469 NPHI_C: Nucleoside tr 66.8 3.7 8E-05 35.2 1.8 49 340-402 8-61 (148)
183 TIGR01054 rgy reverse gyrase. 66.1 35 0.00076 39.7 10.0 82 221-303 101-189 (1171)
184 PF13607 Succ_CoA_lig: Succiny 65.3 46 0.001 28.5 8.4 85 243-348 3-89 (138)
185 cd00046 DEXDc DEAD-like helica 63.7 43 0.00093 26.7 7.8 98 222-324 9-115 (144)
186 cd03028 GRX_PICOT_like Glutare 63.4 41 0.00089 26.1 7.2 60 241-301 7-72 (90)
187 TIGR00365 monothiol glutaredox 63.1 41 0.0009 26.7 7.2 61 240-301 10-76 (97)
188 PF13245 AAA_19: Part of AAA d 62.7 18 0.00039 27.5 4.8 39 223-261 20-62 (76)
189 COG1111 MPH1 ERCC4-like helica 62.0 95 0.0021 32.5 11.1 133 224-364 40-185 (542)
190 TIGR02562 cas3_yersinia CRISPR 61.0 47 0.001 37.9 9.4 95 245-342 761-884 (1110)
191 COG4581 Superfamily II RNA hel 59.6 20 0.00043 40.7 6.3 81 270-352 449-537 (1041)
192 PRK05728 DNA polymerase III su 59.4 22 0.00048 30.5 5.4 40 222-261 10-49 (142)
193 PRK13766 Hef nuclease; Provisi 59.1 1.7E+02 0.0036 32.4 13.6 136 222-364 38-185 (773)
194 PRK06646 DNA polymerase III su 58.7 25 0.00053 30.8 5.6 40 222-261 10-49 (154)
195 COG2247 LytB Putative cell wal 58.7 41 0.00088 33.0 7.4 60 240-299 75-139 (337)
196 cd00268 DEADc DEAD-box helicas 56.3 1.4E+02 0.0031 26.3 12.7 91 222-317 45-149 (203)
197 COG1197 Mfd Transcription-repa 56.2 69 0.0015 36.8 9.7 93 224-317 626-722 (1139)
198 PF03808 Glyco_tran_WecB: Glyc 55.3 1.1E+02 0.0024 26.9 9.4 71 228-299 35-108 (172)
199 KOG0352|consensus 54.1 30 0.00064 35.4 5.8 134 222-366 45-202 (641)
200 TIGR01389 recQ ATP-dependent D 53.8 3E+02 0.0066 29.3 14.7 79 221-303 36-114 (591)
201 PRK10824 glutaredoxin-4; Provi 53.5 86 0.0019 26.0 7.7 60 241-301 14-79 (115)
202 KOG0389|consensus 51.8 3.8 8.3E-05 44.5 -0.7 74 130-206 619-700 (941)
203 COG1110 Reverse gyrase [DNA re 51.8 82 0.0018 35.8 9.2 81 223-304 107-193 (1187)
204 cd01524 RHOD_Pyr_redox Member 51.5 24 0.00052 27.1 4.0 38 239-276 49-86 (90)
205 cd06533 Glyco_transf_WecG_TagA 51.3 1.5E+02 0.0033 26.0 9.6 71 228-299 33-106 (171)
206 KOG1133|consensus 51.2 2.3E+02 0.005 31.0 12.0 96 225-323 612-721 (821)
207 PRK11776 ATP-dependent RNA hel 50.1 92 0.002 32.0 9.2 93 222-319 50-155 (460)
208 COG0626 MetC Cystathionine bet 48.7 56 0.0012 33.2 7.0 89 224-337 85-174 (396)
209 PF04364 DNA_pol3_chi: DNA pol 47.4 36 0.00079 29.0 4.8 79 227-322 15-97 (137)
210 PTZ00062 glutaredoxin; Provisi 46.1 1.7E+02 0.0037 26.8 9.2 70 230-301 102-177 (204)
211 TIGR00376 DNA helicase, putati 45.5 53 0.0012 35.6 6.7 52 223-274 183-234 (637)
212 COG0514 RecQ Superfamily II DN 45.4 78 0.0017 33.9 7.7 131 230-366 47-192 (590)
213 TIGR00696 wecB_tagA_cpsF bacte 45.3 2.2E+02 0.0048 25.3 9.7 71 228-299 35-107 (177)
214 cd01520 RHOD_YbbB Member of th 44.9 52 0.0011 27.3 5.3 39 239-277 84-123 (128)
215 PRK09401 reverse gyrase; Revie 44.2 1.4E+02 0.003 35.0 10.1 96 221-317 103-207 (1176)
216 PRK11192 ATP-dependent RNA hel 43.9 1.7E+02 0.0036 29.8 9.9 91 222-317 47-153 (434)
217 COG4098 comFA Superfamily II D 43.6 45 0.00097 33.2 5.1 61 218-278 121-183 (441)
218 PRK04837 ATP-dependent RNA hel 43.3 1.6E+02 0.0035 29.8 9.6 94 221-319 53-165 (423)
219 PF13086 AAA_11: AAA domain; P 42.3 1.3E+02 0.0027 26.9 7.9 41 223-263 27-75 (236)
220 cd01523 RHOD_Lact_B Member of 42.0 35 0.00077 26.7 3.7 38 239-276 59-96 (100)
221 PRK11057 ATP-dependent DNA hel 42.0 4.7E+02 0.01 28.1 14.3 78 221-302 48-125 (607)
222 COG0513 SrmB Superfamily II DN 41.6 1.6E+02 0.0036 30.9 9.5 93 221-318 74-181 (513)
223 COG1205 Distinct helicase fami 41.5 86 0.0019 35.3 7.7 135 222-361 94-252 (851)
224 smart00450 RHOD Rhodanese Homo 41.2 44 0.00095 25.2 4.1 38 239-276 54-92 (100)
225 PF00270 DEAD: DEAD/DEAH box h 40.2 2.3E+02 0.0049 23.9 9.6 91 222-317 23-125 (169)
226 PRK10590 ATP-dependent RNA hel 40.0 2.2E+02 0.0047 29.3 10.0 92 221-317 46-155 (456)
227 PF02492 cobW: CobW/HypB/UreG, 39.9 1.2E+02 0.0026 26.6 7.2 77 222-299 9-91 (178)
228 PRK04537 ATP-dependent RNA hel 39.8 1.7E+02 0.0038 31.1 9.5 92 221-317 54-165 (572)
229 cd03031 GRX_GRX_like Glutaredo 39.5 1.4E+02 0.003 25.8 7.2 59 243-301 1-69 (147)
230 TIGR03817 DECH_helic helicase/ 38.1 1.3E+02 0.0029 33.2 8.5 92 222-319 60-165 (742)
231 PTZ00110 helicase; Provisional 37.5 1.9E+02 0.0042 30.6 9.4 92 221-317 175-283 (545)
232 cd01534 4RHOD_Repeat_3 Member 37.0 51 0.0011 25.5 3.8 37 240-276 55-91 (95)
233 cd01528 RHOD_2 Member of the R 36.1 1.1E+02 0.0024 23.8 5.7 38 240-277 57-95 (101)
234 PRK09751 putative ATP-dependen 35.9 1.3E+02 0.0029 35.9 8.3 93 222-319 5-132 (1490)
235 PF04007 DUF354: Protein of un 35.5 1.9E+02 0.004 28.7 8.3 47 222-271 8-54 (335)
236 cd01529 4RHOD_Repeats Member o 35.0 75 0.0016 24.5 4.5 38 239-276 54-92 (96)
237 cd01449 TST_Repeat_2 Thiosulfa 34.5 1.1E+02 0.0023 24.6 5.5 47 229-275 65-113 (118)
238 PRK10329 glutaredoxin-like pro 34.4 2.1E+02 0.0045 21.8 6.9 55 243-299 2-57 (81)
239 COG2927 HolC DNA polymerase II 34.3 1E+02 0.0022 26.7 5.4 37 225-261 12-49 (144)
240 PF01352 KRAB: KRAB box; Inte 33.1 39 0.00085 22.5 2.1 18 31-48 16-33 (41)
241 PF12367 PFO_beta_C: Pyruvate 33.0 1E+02 0.0022 23.0 4.5 47 314-361 16-62 (67)
242 PRK01297 ATP-dependent RNA hel 32.8 2.9E+02 0.0064 28.4 9.7 93 221-317 132-243 (475)
243 PRK11634 ATP-dependent RNA hel 32.0 2.8E+02 0.006 30.1 9.5 91 222-317 52-155 (629)
244 COG0610 Type I site-specific r 31.9 1.6E+02 0.0034 33.7 8.0 70 279-350 579-651 (962)
245 cd01533 4RHOD_Repeat_2 Member 31.9 1.2E+02 0.0026 24.1 5.3 37 240-276 65-103 (109)
246 PF07652 Flavi_DEAD: Flaviviru 31.9 67 0.0015 27.9 3.9 117 221-349 12-133 (148)
247 cd01521 RHOD_PspE2 Member of t 31.4 78 0.0017 25.3 4.2 38 239-276 62-101 (110)
248 KOG1805|consensus 30.6 5.5E+02 0.012 29.4 11.3 51 223-273 695-745 (1100)
249 COG0553 HepA Superfamily II DN 30.3 8.1 0.00018 42.8 -2.5 40 299-340 485-524 (866)
250 cd01447 Polysulfide_ST Polysul 30.0 57 0.0012 25.3 3.1 38 239-276 59-97 (103)
251 KOG0347|consensus 29.5 1.6E+02 0.0034 31.4 6.7 48 239-286 259-312 (731)
252 cd01518 RHOD_YceA Member of th 29.4 76 0.0017 24.8 3.7 38 239-276 59-97 (101)
253 COG2179 Predicted hydrolase of 28.5 3.8E+02 0.0082 23.9 8.0 62 229-292 50-111 (175)
254 COG0541 Ffh Signal recognition 28.4 4.1E+02 0.0089 27.4 9.4 85 221-307 108-196 (451)
255 PF00581 Rhodanese: Rhodanese- 28.0 1.4E+02 0.003 23.2 5.1 38 239-276 65-108 (113)
256 PHA02558 uvsW UvsW helicase; P 27.5 2.5E+02 0.0053 29.4 8.1 44 221-264 137-181 (501)
257 cd01527 RHOD_YgaP Member of th 27.3 97 0.0021 24.0 4.0 38 239-276 52-90 (99)
258 cd01526 RHOD_ThiF Member of th 26.7 72 0.0016 26.1 3.2 38 239-276 70-109 (122)
259 PLN02363 phosphoribosylanthran 26.7 4.7E+02 0.01 24.8 9.1 50 229-280 87-137 (256)
260 COG1560 HtrB Lauroyl/myristoyl 25.7 5.3E+02 0.011 25.2 9.5 38 232-269 113-150 (308)
261 TIGR03167 tRNA_sel_U_synt tRNA 25.5 1.7E+02 0.0038 28.6 6.1 49 239-288 72-121 (311)
262 KOG0331|consensus 25.2 3.8E+02 0.0082 28.3 8.7 91 222-317 137-245 (519)
263 PRK03692 putative UDP-N-acetyl 25.2 5.8E+02 0.013 24.0 9.7 71 228-299 92-164 (243)
264 cd03027 GRX_DEP Glutaredoxin ( 24.9 2.7E+02 0.0059 20.1 7.3 59 243-302 2-61 (73)
265 cd01444 GlpE_ST GlpE sulfurtra 24.5 1.2E+02 0.0027 23.0 4.1 38 239-276 54-92 (96)
266 cd02067 B12-binding B12 bindin 24.4 3.2E+02 0.0069 22.0 6.8 35 253-287 15-49 (119)
267 PRK13958 N-(5'-phosphoribosyl) 24.3 2.7E+02 0.0058 25.4 6.8 50 229-280 41-90 (207)
268 cd01535 4RHOD_Repeat_4 Member 24.0 2.2E+02 0.0047 24.3 5.8 46 230-276 39-85 (145)
269 PF09419 PGP_phosphatase: Mito 23.8 4.3E+02 0.0092 23.4 7.7 55 232-290 66-130 (168)
270 TIGR02981 phageshock_pspE phag 23.7 2.8E+02 0.0062 22.0 6.1 36 240-275 57-92 (101)
271 PRK01222 N-(5'-phosphoribosyl) 23.3 3E+02 0.0066 25.1 7.0 53 230-284 44-96 (210)
272 PRK14873 primosome assembly pr 23.3 1.7E+02 0.0036 32.0 5.9 67 265-346 453-535 (665)
273 PLN03137 ATP-dependent DNA hel 22.9 4.2E+02 0.0092 31.0 9.1 80 221-303 483-563 (1195)
274 cd01448 TST_Repeat_1 Thiosulfa 22.8 2.1E+02 0.0045 23.0 5.3 38 239-276 77-116 (122)
275 cd01519 RHOD_HSP67B2 Member of 22.8 1.2E+02 0.0027 23.6 3.8 37 240-276 65-102 (106)
276 cd01525 RHOD_Kc Member of the 22.4 1.2E+02 0.0026 23.7 3.7 36 241-276 65-101 (105)
277 PRK01122 potassium-transportin 22.3 5.7E+02 0.012 28.1 9.8 105 231-337 414-567 (679)
278 cd01445 TST_Repeats Thiosulfat 22.2 2.2E+02 0.0048 24.0 5.5 48 229-276 82-134 (138)
279 PRK11784 tRNA 2-selenouridine 22.0 4E+02 0.0086 26.5 7.9 49 240-289 87-136 (345)
280 PF13344 Hydrolase_6: Haloacid 21.6 1.6E+02 0.0034 23.4 4.2 42 229-270 18-60 (101)
281 PRK07920 lipid A biosynthesis 21.6 7.2E+02 0.016 23.8 9.8 42 234-275 100-141 (298)
282 TIGR02717 AcCoA-syn-alpha acet 21.3 5.7E+02 0.012 26.3 9.3 87 241-348 150-238 (447)
283 PRK00254 ski2-like helicase; P 21.1 3.1E+02 0.0068 30.1 7.7 58 221-278 47-108 (720)
284 cd00158 RHOD Rhodanese Homolog 21.0 1.8E+02 0.0038 21.4 4.3 38 239-276 48-86 (89)
285 PRK09860 putative alcohol dehy 21.0 4.8E+02 0.011 26.1 8.5 72 223-297 15-93 (383)
286 TIGR02190 GlrX-dom Glutaredoxi 21.0 3.5E+02 0.0077 20.0 5.9 60 240-301 6-66 (79)
287 TIGR00963 secA preprotein tran 21.0 5.2E+02 0.011 28.6 9.1 63 221-284 77-144 (745)
288 PF00290 Trp_syntA: Tryptophan 20.6 1.9E+02 0.0041 27.6 5.1 87 272-364 66-162 (259)
289 TIGR02370 pyl_corrinoid methyl 20.3 6.3E+02 0.014 22.6 10.7 49 241-289 84-136 (197)
290 TIGR01425 SRP54_euk signal rec 20.2 7.3E+02 0.016 25.6 9.6 80 221-301 108-191 (429)
No 1
>KOG0385|consensus
Probab=100.00 E-value=4.9e-56 Score=451.10 Aligned_cols=241 Identities=46% Similarity=0.780 Sum_probs=219.7
Q ss_pred CcccccchhhhhhhchhhccCCCCeeEEEecCCCHHHHHHHHHHHhhhhhhhhhhHHhhhccccccCCCCCCCCCcccch
Q psy1089 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTIGENREQVAEYFNTTVNTSSSSDSSGNESYIW 80 (404)
Q Consensus 1 l~~ll~pf~LRR~K~~V~~~LP~K~~~~v~~~lt~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (404)
||.+|+||+|||+|.+|.+.||||++.+++|+||+.|+++|..++.+.+....+.
T Consensus 372 Lh~vL~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~------------------------- 426 (971)
T KOG0385|consen 372 LHKVLRPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGE------------------------- 426 (971)
T ss_pred HHhhhhHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhccc-------------------------
Confidence 6899999999999999999999999999999999999999999997653322110
Q ss_pred hccccccccccccccccccccccchhhccccchhccccccccchhHHhhhhhhccccCCCCchhhhhhhhhccccCCCCC
Q psy1089 81 FSEESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEPCENSS 160 (404)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (404)
T Consensus 427 -------------------------------------------------------------------------------- 426 (971)
T KOG0385|consen 427 -------------------------------------------------------------------------------- 426 (971)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcchhhhhhHHHhhhhhhhHHHHHHHHHHHhCCCCccccCCcccCCCcccccccccccCCcHHHHHHHHHHHhhhC
Q psy1089 161 NAQDVPSAEEKNVDEILHHVNVKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQT 240 (404)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~ic~hP~L~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~ll~~l~~~ 240 (404)
.......++|++|+||+||+||||+.+..+ .......++++.+|||+.+|.++|..+.+.
T Consensus 427 ----------------~~~~k~kL~NI~mQLRKccnHPYLF~g~eP----g~pyttdehLv~nSGKm~vLDkLL~~Lk~~ 486 (971)
T KOG0385|consen 427 ----------------GKGEKTKLQNIMMQLRKCCNHPYLFDGAEP----GPPYTTDEHLVTNSGKMLVLDKLLPKLKEQ 486 (971)
T ss_pred ----------------ccchhhHHHHHHHHHHHhcCCccccCCCCC----CCCCCcchHHHhcCcceehHHHHHHHHHhC
Confidence 000125699999999999999999988322 135566788999999999999999999999
Q ss_pred CCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCC-CceEEEeeccccccCCCCCCCCEEEEec
Q psy1089 241 NHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGST-EWGVFLLSTRAGGQGLNLTAADTCILYD 319 (404)
Q Consensus 241 ~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~-~~~vlLis~~a~g~GlnL~~a~~VI~~d 319 (404)
|+|||||||++.++|+|++++..+|+.|+||||+++.++|..+|+.|+..+ .+.|+|+||+|||.||||+.|++||+||
T Consensus 487 GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyD 566 (971)
T KOG0385|consen 487 GHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYD 566 (971)
T ss_pred CCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEec
Confidence 999999999999999999999999999999999999999999999999987 7899999999999999999999999999
Q ss_pred CCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHhcCC
Q psy1089 320 SDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDSSGS 366 (404)
Q Consensus 320 ~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~~K~ 366 (404)
.+|||..+.||.+|+|||||+++|.|||||+.+||||+|++++..|.
T Consensus 567 SDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL 613 (971)
T KOG0385|consen 567 SDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKL 613 (971)
T ss_pred CCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999984
No 2
>KOG0384|consensus
Probab=100.00 E-value=3.6e-56 Score=469.95 Aligned_cols=257 Identities=40% Similarity=0.652 Sum_probs=231.3
Q ss_pred CcccccchhhhhhhchhhccCCCCeeEEEecCCCHHHHHHHHHHHhhhhhhhhhhHHhhhccccccCCCCCCCCCcccch
Q psy1089 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTIGENREQVAEYFNTTVNTSSSSDSSGNESYIW 80 (404)
Q Consensus 1 l~~ll~pf~LRR~K~~V~~~LP~K~~~~v~~~lt~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (404)
||.+|+||||||+|+||.+.||||.|+++.|+||+.|+++|+.|+++........
T Consensus 576 L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG------------------------- 630 (1373)
T KOG0384|consen 576 LQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKG------------------------- 630 (1373)
T ss_pred HHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhcc-------------------------
Confidence 6889999999999999999999999999999999999999999998874332111
Q ss_pred hccccccccccccccccccccccchhhccccchhccccccccchhHHhhhhhhccccCCCCchhhhhhhhhccccCCCCC
Q psy1089 81 FSEESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEPCENSS 160 (404)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (404)
T Consensus 631 -------------------------------------------------------------------------------- 630 (1373)
T KOG0384|consen 631 -------------------------------------------------------------------------------- 630 (1373)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcchhhhhhHHHhhhhhhhHHHHHHHHHHHhCCCCccccCCcccCCCccc----ccccccccCCcHHHHHHHHHHH
Q psy1089 161 NAQDVPSAEEKNVDEILHHVNVKMTNVTMVLRNIISHPYLINKPYRIVDGKKEM----VCDENIVSSSGKMIVLNQLLHK 236 (404)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~ic~hP~L~~~~~~~~~~~~~~----~~~~~~~~~S~Kl~~L~~ll~~ 236 (404)
.++...+++|++|.||+|||||||+.+........... .....++.+|||+-.|.+||..
T Consensus 631 ----------------~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~r 694 (1373)
T KOG0384|consen 631 ----------------AKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPR 694 (1373)
T ss_pred ----------------CCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHH
Confidence 01122579999999999999999999865543332211 2345678999999999999999
Q ss_pred hhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCC-CceEEEeeccccccCCCCCCCCEE
Q psy1089 237 LKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGST-EWGVFLLSTRAGGQGLNLTAADTC 315 (404)
Q Consensus 237 l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~-~~~vlLis~~a~g~GlnL~~a~~V 315 (404)
+.+.|+|||||||++++||+|+++|..++++|-||||+++.+-|+.+|++|+... .-.|||+||+|||.||||..|++|
T Consensus 695 Lk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTV 774 (1373)
T KOG0384|consen 695 LKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTV 774 (1373)
T ss_pred HhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceE
Confidence 9999999999999999999999999999999999999999999999999999876 678999999999999999999999
Q ss_pred EEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHhcCCccccchhhhcccccccccc
Q psy1089 316 ILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDSSGSVSWSSQSVKEKLPIGFMCV 385 (404)
Q Consensus 316 I~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~~K~~~~~~~~~~~~l~~~~~~~ 385 (404)
|+||.+|||..+.||.+|+|||||++.|.||||||+||+||.|++++..| +..++++++.|+.
T Consensus 775 IIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~K-------mvLD~aVIQ~m~t 837 (1373)
T KOG0384|consen 775 IIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLK-------MVLDHAVIQRMDT 837 (1373)
T ss_pred EEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHH-------hhhHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999987 8999999999986
No 3
>KOG0389|consensus
Probab=100.00 E-value=2e-50 Score=411.55 Aligned_cols=284 Identities=33% Similarity=0.517 Sum_probs=233.8
Q ss_pred cccccchhhhhhhchhhccCCCCeeEEEecCCCHHHHHHHHHHHhhhhhhhhhhHHhhhccccccCCCCCCCCCcccchh
Q psy1089 2 HNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTIGENREQVAEYFNTTVNTSSSSDSSGNESYIWF 81 (404)
Q Consensus 2 ~~ll~pf~LRR~K~~V~~~LP~K~~~~v~~~lt~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (404)
..||+||+|||+|.+|+++||||...+.+|+|+..|+.+|..+++.......+
T Consensus 617 K~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~--------------------------- 669 (941)
T KOG0389|consen 617 KTIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNE--------------------------- 669 (941)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccc---------------------------
Confidence 46899999999999999999999999999999999999999999776211110
Q ss_pred ccccccccccccccccccccccchhhccccchhcccc--ccccchhHHhhhhhhccccCCCCchhhhhhhhhccccCCCC
Q psy1089 82 SEESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSL--NKTYDLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEPCENS 159 (404)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (404)
.+.+ + .-..++.+|+++|+.++++ |.-|+...+..|.+.++..
T Consensus 670 --------~~~n---s--~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~mak~il~e---------------------- 714 (941)
T KOG0389|consen 670 --------VSKN---S--ELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKMAKRILNE---------------------- 714 (941)
T ss_pred --------cccc---c--ccccchHHHHHHHHhcChhHHHHhccHHHHHHHHHHHhCc----------------------
Confidence 0000 0 1112678999999999844 7788888888888876522
Q ss_pred CCCCCCcchhhhhhHHHhhhhhhhHHHHHHHHHHHhCCCCccccCCcccCCCcccccccccccCCcHHHHHHHHHHHhhh
Q psy1089 160 SNAQDVPSAEEKNVDEILHHVNVKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQ 239 (404)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~ic~hP~L~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~ll~~l~~ 239 (404)
|.........+.+.. ..+.-+.--+-||.+|.+. .+......|..|||+..|..+|..+..
T Consensus 715 ------~ay~~~n~qyIfEDm--~~msDfelHqLc~~f~~~~-----------~f~L~d~~~mdSgK~r~L~~LLp~~k~ 775 (941)
T KOG0389|consen 715 ------PAYKKANEQYIFEDM--EVMSDFELHQLCCQFRHLS-----------KFQLKDDLWMDSGKCRKLKELLPKIKK 775 (941)
T ss_pred ------hhhhhcCHHHHHHHH--HhhhHHHHHHHHHhcCCCc-----------ccccCCchhhhhhhHhHHHHHHHHHhh
Confidence 222222333333322 1222233334567777332 223345568889999999999999999
Q ss_pred CCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEec
Q psy1089 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYD 319 (404)
Q Consensus 240 ~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~d 319 (404)
+|+||||||||+.++|+|+.+|...|+.|.|++|++....|+.+|+.|+.+.++.|+|+||+|||.||||++|++||++|
T Consensus 776 ~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD 855 (941)
T KOG0389|consen 776 KGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHD 855 (941)
T ss_pred cCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHhcCC
Q psy1089 320 SDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDSSGS 366 (404)
Q Consensus 320 ~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~~K~ 366 (404)
.++||-.+.||++|+||+||+++|+|||||+++||||.|++++..|-
T Consensus 856 ~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL 902 (941)
T KOG0389|consen 856 IDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKL 902 (941)
T ss_pred cCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999884
No 4
>KOG0387|consensus
Probab=100.00 E-value=2e-48 Score=397.33 Aligned_cols=240 Identities=33% Similarity=0.558 Sum_probs=209.6
Q ss_pred Ccccccchhhhhhhchhhc-cCCCCeeEEEecCCCHHHHHHHHHHHhhhhhhhhhhHHhhhccccccCCCCCCCCCcccc
Q psy1089 1 MHNILKPFFLRRLKCDVNL-NLPPKKTTVIDCPMVPAQELMYTKVLTKTIGENREQVAEYFNTTVNTSSSSDSSGNESYI 79 (404)
Q Consensus 1 l~~ll~pf~LRR~K~~V~~-~LP~K~~~~v~~~lt~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (404)
|+.+|.||||||+|.||.. .||.|.++|++|.||+.|+++|..+++.. .|..+++-
T Consensus 432 Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~------~v~~i~ng----------------- 488 (923)
T KOG0387|consen 432 LRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSS------EVNKILNG----------------- 488 (923)
T ss_pred HHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhH------HHHHHHcC-----------------
Confidence 6789999999999999998 99999999999999999999999999764 11111111
Q ss_pred hhccccccccccccccccccccccchhhccccchhccccccccchhHHhhhhhhccccCCCCchhhhhhhhhccccCCCC
Q psy1089 80 WFSEESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEPCENS 159 (404)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (404)
T Consensus 489 -------------------------------------------------------------------------------- 488 (923)
T KOG0387|consen 489 -------------------------------------------------------------------------------- 488 (923)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcchhhhhhHHHhhhhhhhHHHHHHHHHHHhCCCCccccCCcccCCCcccccccccccCCcHHHHHHHHHHHhhh
Q psy1089 160 SNAQDVPSAEEKNVDEILHHVNVKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQ 239 (404)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~ic~hP~L~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~ll~~l~~ 239 (404)
...++.-+..||++||||.|+........ ........+..|||++++..++..+..
T Consensus 489 ---------------------~~~~l~Gi~iLrkICnHPdll~~~~~~~~---~~~D~~g~~k~sGKm~vl~~ll~~W~k 544 (923)
T KOG0387|consen 489 ---------------------KRNCLSGIDILRKICNHPDLLDRRDEDEK---QGPDYEGDPKRSGKMKVLAKLLKDWKK 544 (923)
T ss_pred ---------------------CccceechHHHHhhcCCcccccCcccccc---cCCCcCCChhhcchHHHHHHHHHHHhh
Confidence 01233447789999999999887421111 111122567789999999999999999
Q ss_pred CCCeEEEEecchHHHHHHHHHHH-hcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEe
Q psy1089 240 TNHKTLVFSTMVKVLNFIEELCV-LENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILY 318 (404)
Q Consensus 240 ~~~KvlIFs~~~~~l~~L~~~L~-~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~ 318 (404)
.|.|+|+|++...++++|+.+|. ..|+.|++++|.++...|+.+|++||++++..|+|++|++||.|+||++||.||+|
T Consensus 545 qg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIf 624 (923)
T KOG0387|consen 545 QGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIF 624 (923)
T ss_pred CCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEE
Confidence 99999999999999999999999 79999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHhcCCc
Q psy1089 319 DSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDSSGSV 367 (404)
Q Consensus 319 d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~~K~~ 367 (404)
||+|||+++.||..|+||+||++.|.||||++.|||||.||.++=-|+.
T Consensus 625 DPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQI~Kq~ 673 (923)
T KOG0387|consen 625 DPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQIFKQF 673 (923)
T ss_pred CCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999766643
No 5
>KOG0392|consensus
Probab=100.00 E-value=1.3e-47 Score=403.75 Aligned_cols=278 Identities=30% Similarity=0.479 Sum_probs=225.6
Q ss_pred CcccccchhhhhhhchhhccCCCCeeEEEecCCCHHHHHHHHHHHhhhhhhhhhhHHhhhccccccCCCCCCCCCcccch
Q psy1089 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTIGENREQVAEYFNTTVNTSSSSDSSGNESYIW 80 (404)
Q Consensus 1 l~~ll~pf~LRR~K~~V~~~LP~K~~~~v~~~lt~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (404)
||+.+-||||||+|.||+++||||..+..||+|+|.|+++|+++..+.......+ -
T Consensus 1195 LHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~--------------~---------- 1250 (1549)
T KOG0392|consen 1195 LHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQ--------------I---------- 1250 (1549)
T ss_pred HHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccc--------------c----------
Confidence 6888999999999999999999999999999999999999999997731110000 0
Q ss_pred hccccccccccccccccccccccchhhccccchhccccccccchhHHhhhhhhccccCCCCchhhhhhhhhccccCCCCC
Q psy1089 81 FSEESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEPCENSS 160 (404)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (404)
++|..
T Consensus 1251 -------------d~~~~-------------------------------------------------------------- 1255 (1549)
T KOG0392|consen 1251 -------------DGGEE-------------------------------------------------------------- 1255 (1549)
T ss_pred -------------ccchh--------------------------------------------------------------
Confidence 00000
Q ss_pred CCCCCcchhhhhhHHHhhhhhhhHHHHHHHHHHHhCCCCccccCCcccCCC-----cccccccccccCCcHHHHHHHHHH
Q psy1089 161 NAQDVPSAEEKNVDEILHHVNVKMTNVTMVLRNIISHPYLINKPYRIVDGK-----KEMVCDENIVSSSGKMIVLNQLLH 235 (404)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~ic~hP~L~~~~~~~~~~~-----~~~~~~~~~~~~S~Kl~~L~~ll~ 235 (404)
+ ......|++..+..||+.|+||.|+..+..+.-.. ......-+-+..|+|+.+|.++|.
T Consensus 1256 ----S-----------~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~ 1320 (1549)
T KOG0392|consen 1256 ----S-----------LGTDKTHVFQALQYLRKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLS 1320 (1549)
T ss_pred ----c-----------cCcchHHHHHHHHHHHHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHH
Confidence 0 00014689999999999999999998753221100 000111122578999999999999
Q ss_pred Hhh--------------hCCCeEEEEecchHHHHHHHHHHHh---cCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEe
Q psy1089 236 KLK--------------QTNHKTLVFSTMVKVLNFIEELCVL---ENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLL 298 (404)
Q Consensus 236 ~l~--------------~~~~KvlIFs~~~~~l~~L~~~L~~---~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLi 298 (404)
++- ..++|+|||||++.++|++++.|.. ..+.|.|+||++++.+|++++++||+++.+.|+|+
T Consensus 1321 eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlL 1400 (1549)
T KOG0392|consen 1321 ECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLL 1400 (1549)
T ss_pred HhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEE
Confidence 872 1468999999999999999998853 35678899999999999999999999999999999
Q ss_pred eccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHhcCCccccchhhhccc
Q psy1089 299 STRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDSSGSVSWSSQSVKEKL 378 (404)
Q Consensus 299 s~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~~K~~~~~~~~~~~~l 378 (404)
+|.+||.||||++|++|||++.+|||..+.||++|+||+||++.|.|||||++||+||.|+.+++ +|-..
T Consensus 1401 TThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGTLEEKVMgLQk----------FKmnv 1470 (1549)
T KOG0392|consen 1401 TTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKVMGLQK----------FKMNV 1470 (1549)
T ss_pred eeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcccHHHHHhhHHH----------HhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999955 45556
Q ss_pred ccccccccCcceecccHHHHHhhh
Q psy1089 379 PIGFMCVTGSFLKSSSFFTYLQTY 402 (404)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~ 402 (404)
+...++-++.-+.++.-..+|.||
T Consensus 1471 AntvInqqNasl~tM~TdqLLdlF 1494 (1549)
T KOG0392|consen 1471 ANTVINQQNASLETMDTDQLLDLF 1494 (1549)
T ss_pred HHHHHhcccccccccCHHHHHHHh
Confidence 667777777778887777777776
No 6
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=1.3e-46 Score=408.29 Aligned_cols=240 Identities=40% Similarity=0.686 Sum_probs=210.9
Q ss_pred CcccccchhhhhhhchhhccCCCCeeEEEecCCCHHHHHHHHHHHhhhhhhhhhhHHhhhccccccCCCCCCCCCcccch
Q psy1089 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTIGENREQVAEYFNTTVNTSSSSDSSGNESYIW 80 (404)
Q Consensus 1 l~~ll~pf~LRR~K~~V~~~LP~K~~~~v~~~lt~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (404)
||.+|.||||||+|++|..+||||.+.+++|+||+.|+++|..++.+...... .
T Consensus 374 L~~~L~pf~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~--------~------------------ 427 (1033)
T PLN03142 374 LHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVN--------A------------------ 427 (1033)
T ss_pred HHHHhhHHHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHh--------c------------------
Confidence 57899999999999999999999999999999999999999999876421110 0
Q ss_pred hccccccccccccccccccccccchhhccccchhccccccccchhHHhhhhhhccccCCCCchhhhhhhhhccccCCCCC
Q psy1089 81 FSEESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEPCENSS 160 (404)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (404)
T Consensus 428 -------------------------------------------------------------------------------- 427 (1033)
T PLN03142 428 -------------------------------------------------------------------------------- 427 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcchhhhhhHHHhhhhhhhHHHHHHHHHHHhCCCCccccCCcccCCCcccccccccccCCcHHHHHHHHHHHhhhC
Q psy1089 161 NAQDVPSAEEKNVDEILHHVNVKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQT 240 (404)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~ic~hP~L~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~ll~~l~~~ 240 (404)
......+++.+++||+||+||+|....... ........++..|+|+..|..+|..+...
T Consensus 428 -----------------g~~~~~LlnilmqLRk~cnHP~L~~~~ep~----~~~~~~e~lie~SgKl~lLdkLL~~Lk~~ 486 (1033)
T PLN03142 428 -----------------GGERKRLLNIAMQLRKCCNHPYLFQGAEPG----PPYTTGEHLVENSGKMVLLDKLLPKLKER 486 (1033)
T ss_pred -----------------cccHHHHHHHHHHHHHHhCCHHhhhccccc----CcccchhHHhhhhhHHHHHHHHHHHHHhc
Confidence 000124678899999999999998653321 11222345678899999999999999999
Q ss_pred CCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCC-CceEEEeeccccccCCCCCCCCEEEEec
Q psy1089 241 NHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGST-EWGVFLLSTRAGGQGLNLTAADTCILYD 319 (404)
Q Consensus 241 ~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~-~~~vlLis~~a~g~GlnL~~a~~VI~~d 319 (404)
|+||||||+|+.++++|+++|...|+.+++|+|+++..+|+.+++.|+.++ ...|+|+|+++||.||||+.|++||+||
T Consensus 487 g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD 566 (1033)
T PLN03142 487 DSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYD 566 (1033)
T ss_pred CCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeC
Confidence 999999999999999999999999999999999999999999999999765 4678999999999999999999999999
Q ss_pred CCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHhcCCc
Q psy1089 320 SDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDSSGSV 367 (404)
Q Consensus 320 ~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~~K~~ 367 (404)
++|||..+.||+||+||+||+++|+||+|++.|||||+|++++..|..
T Consensus 567 ~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl~ 614 (1033)
T PLN03142 567 SDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLA 614 (1033)
T ss_pred CCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998853
No 7
>KOG0391|consensus
Probab=100.00 E-value=4.5e-44 Score=373.61 Aligned_cols=173 Identities=39% Similarity=0.674 Sum_probs=153.4
Q ss_pred CCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccc
Q psy1089 223 SSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRA 302 (404)
Q Consensus 223 ~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a 302 (404)
.+||+..|.=||+.+..+|++||||+|++.++|.|+.+|.++|+-|+++||+++.++|+..+++||.+..+.|+|+|+.+
T Consensus 1258 DcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrS 1337 (1958)
T KOG0391|consen 1258 DCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRS 1337 (1958)
T ss_pred ccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHhcCCccccchhhhccccccc
Q psy1089 303 GGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDSSGSVSWSSQSVKEKLPIGF 382 (404)
Q Consensus 303 ~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~~K~~~~~~~~~~~~l~~~~ 382 (404)
||+|+||++|++|||||.+|||..+.||.+|+|||||+++|+|||||++.||||.|++++..|+ ....++++-
T Consensus 1338 ggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniLkkanqKr-------~L~evaiqg 1410 (1958)
T KOG0391|consen 1338 GGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENILKKANQKR-------MLDEVAIQG 1410 (1958)
T ss_pred CccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHHhhhhHHH-------HHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999998775 233333333
Q ss_pred ccccCcceecccHHHHHhhh
Q psy1089 383 MCVTGSFLKSSSFFTYLQTY 402 (404)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~ 402 (404)
-.-+....+-.++-+++-+|
T Consensus 1411 gdfTt~ff~q~ti~dLFd~~ 1430 (1958)
T KOG0391|consen 1411 GDFTTAFFKQRTIRDLFDVY 1430 (1958)
T ss_pred CCccHHHHhhhhHHHHhcCC
Confidence 33344444444544544443
No 8
>KOG0386|consensus
Probab=100.00 E-value=4.8e-42 Score=357.36 Aligned_cols=243 Identities=38% Similarity=0.624 Sum_probs=213.3
Q ss_pred CcccccchhhhhhhchhhccCCCCeeEEEecCCCHHHHHHHHHHHhhhhhhhhhhHHhhhccccccCCCCCCCCCcccch
Q psy1089 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTIGENREQVAEYFNTTVNTSSSSDSSGNESYIW 80 (404)
Q Consensus 1 l~~ll~pf~LRR~K~~V~~~LP~K~~~~v~~~lt~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (404)
||.+|.||+|||+|++|.++||.|.+.++.|.||..|+-+|....+....-.
T Consensus 609 LHkVLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~---------------------------- 660 (1157)
T KOG0386|consen 609 LHKVLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLK---------------------------- 660 (1157)
T ss_pred HHHhhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCc----------------------------
Confidence 7999999999999999999999999999999999999999999985531000
Q ss_pred hccccccccccccccccccccccchhhccccchhccccccccchhHHhhhhhhccccCCCCchhhhhhhhhccccCCCCC
Q psy1089 81 FSEESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEPCENSS 160 (404)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (404)
+..+
T Consensus 661 ----------------------------d~~~------------------------------------------------ 664 (1157)
T KOG0386|consen 661 ----------------------------DTAK------------------------------------------------ 664 (1157)
T ss_pred ----------------------------Cchh------------------------------------------------
Confidence 0000
Q ss_pred CCCCCcchhhhhhHHHhhhhhhhHHHHHHHHHHHhCCCCccccCCcccCCCcccccccccccCCcHHHHHHHHHHHhhhC
Q psy1089 161 NAQDVPSAEEKNVDEILHHVNVKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQT 240 (404)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~ic~hP~L~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~ll~~l~~~ 240 (404)
.......+.+.++.||+||||||+............ ....++..|||+..|..+|..+.+.
T Consensus 665 ----------------g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~---~~~dL~R~sGKfELLDRiLPKLkat 725 (1157)
T KOG0386|consen 665 ----------------GKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHY---DIKDLVRVSGKFELLDRILPKLKAT 725 (1157)
T ss_pred ----------------ccccchhhhhHhHHHHHhcCCchhhhhhcccccccc---ChhHHHHhccHHHHHHhhhHHHHhc
Confidence 011123588999999999999999855333222111 1157889999999999999999999
Q ss_pred CCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCC-CceEEEeeccccccCCCCCCCCEEEEec
Q psy1089 241 NHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGST-EWGVFLLSTRAGGQGLNLTAADTCILYD 319 (404)
Q Consensus 241 ~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~-~~~vlLis~~a~g~GlnL~~a~~VI~~d 319 (404)
|++|+.||+++..+++++.+|...++.|.++||++..++|...++.||.++ .+.+||+++.+||.|+||+.|++||+||
T Consensus 726 gHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifd 805 (1157)
T KOG0386|consen 726 GHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFD 805 (1157)
T ss_pred CcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEec
Confidence 999999999999999999999999999999999999999999999999877 7889999999999999999999999999
Q ss_pred CCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHhcCC
Q psy1089 320 SDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDSSGS 366 (404)
Q Consensus 320 ~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~~K~ 366 (404)
.+|||..+.||.+|+||+||+++|+|+|+++.+++||.|++.+..|.
T Consensus 806 sdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~a~~Kl 852 (1157)
T KOG0386|consen 806 SDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAEAFYKL 852 (1157)
T ss_pred CCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999988884
No 9
>KOG0388|consensus
Probab=100.00 E-value=1.8e-41 Score=341.46 Aligned_cols=146 Identities=45% Similarity=0.793 Sum_probs=141.7
Q ss_pred cccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEee
Q psy1089 220 IVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLS 299 (404)
Q Consensus 220 ~~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis 299 (404)
.+..|||+..|.++|..+..+|++||+|.|+++++++++++|...|+.+.+++|+....+|..++.+|+. +++.|+|+|
T Consensus 1023 FitdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~-sdiFvFLLS 1101 (1185)
T KOG0388|consen 1023 FITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQA-SDIFVFLLS 1101 (1185)
T ss_pred hhccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccC-CceEEEEEe
Confidence 4567999999999999999999999999999999999999999999999999999999999999999999 569999999
Q ss_pred ccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHhcCC
Q psy1089 300 TRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDSSGS 366 (404)
Q Consensus 300 ~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~~K~ 366 (404)
|+|||.||||++|++|||||.+|||..+.||++|+||.||++.|+||||+++|||||+|++++..|.
T Consensus 1102 TRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK~ 1168 (1185)
T KOG0388|consen 1102 TRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQKD 1168 (1185)
T ss_pred cccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998883
No 10
>KOG0390|consensus
Probab=100.00 E-value=2.4e-39 Score=338.22 Aligned_cols=239 Identities=33% Similarity=0.485 Sum_probs=198.5
Q ss_pred CcccccchhhhhhhchhhccCCCCeeEEEecCCCHHHHHHHHHHHhhhhhhhhhhHHhhhccccccCCCCCCCCCcccch
Q psy1089 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTIGENREQVAEYFNTTVNTSSSSDSSGNESYIW 80 (404)
Q Consensus 1 l~~ll~pf~LRR~K~~V~~~LP~K~~~~v~~~lt~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (404)
|..++.+|++||+-....+.||+|.+++|.|.+|+.|+++|..+++..+....
T Consensus 470 L~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~--------------------------- 522 (776)
T KOG0390|consen 470 LRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTL--------------------------- 522 (776)
T ss_pred HHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhh---------------------------
Confidence 45688999999999889999999999999999999999999999865310000
Q ss_pred hccccccccccccccccccccccchhhccccchhccccccccchhHHhhhhhhccccCCCCchhhhhhhhhccccCCCCC
Q psy1089 81 FSEESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEPCENSS 160 (404)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (404)
T Consensus 523 -------------------------------------------------------------------------------- 522 (776)
T KOG0390|consen 523 -------------------------------------------------------------------------------- 522 (776)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcchhhhhhHHHhhhhhhhHHHHHHHHHHHhCCCCccccCCcccCCCcc-----------cccccccccCCcHHHH
Q psy1089 161 NAQDVPSAEEKNVDEILHHVNVKMTNVTMVLRNIISHPYLINKPYRIVDGKKE-----------MVCDENIVSSSGKMIV 229 (404)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~ic~hP~L~~~~~~~~~~~~~-----------~~~~~~~~~~S~Kl~~ 229 (404)
. ..-+..+..|+++|+||.|+.........+.. ...+..-..-|+|+..
T Consensus 523 -----------------~---~~~l~~~~~L~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~ 582 (776)
T KOG0390|consen 523 -----------------K---GYALELITKLKKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLV 582 (776)
T ss_pred -----------------h---cchhhHHHHHHHHhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHH
Confidence 0 01344578899999999999621111110000 0111111224889999
Q ss_pred HHHHHHHhhh-CCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCc-eEEEeeccccccCC
Q psy1089 230 LNQLLHKLKQ-TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEW-GVFLLSTRAGGQGL 307 (404)
Q Consensus 230 L~~ll~~l~~-~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~-~vlLis~~a~g~Gl 307 (404)
|..++....+ .-.++++.++++.++++++..++..|+.++++||.++..+|+.+|+.||+.++. .|+|+|++|||+||
T Consensus 583 L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~Gi 662 (776)
T KOG0390|consen 583 LVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGL 662 (776)
T ss_pred HHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCce
Confidence 9999865544 347888889999999999999999999999999999999999999999998855 99999999999999
Q ss_pred CCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHhcCC
Q psy1089 308 NLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDSSGS 366 (404)
Q Consensus 308 nL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~~K~ 366 (404)
||.+|++||+||++|||+.+.||++|+||.||+++|+||||++.||+||.||++|..|+
T Consensus 663 nLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~qrq~~K~ 721 (776)
T KOG0390|consen 663 NLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIYQRQTHKE 721 (776)
T ss_pred eecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999885
No 11
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=3.4e-36 Score=330.55 Aligned_cols=280 Identities=32% Similarity=0.508 Sum_probs=225.2
Q ss_pred Ccccccchhhhhhhch--hhccCCCCeeEEEecCCCHHHHHHHHHHHhhh---hhhhhhhHHhhhccccccCCCCCCCCC
Q psy1089 1 MHNILKPFFLRRLKCD--VNLNLPPKKTTVIDCPMVPAQELMYTKVLTKT---IGENREQVAEYFNTTVNTSSSSDSSGN 75 (404)
Q Consensus 1 l~~ll~pf~LRR~K~~--V~~~LP~K~~~~v~~~lt~~Q~~~Y~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (404)
||.+++||+|||+|.+ |+++||+|.+.+++|+|++.|+++|...+... ....... . .
T Consensus 565 l~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~----~-~------------- 626 (866)
T COG0553 565 LRKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDL----E-K------------- 626 (866)
T ss_pred HHHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHH----H-h-------------
Confidence 4688999999999999 99999999999999999999999999999743 1111000 0 0
Q ss_pred cccchhccccccccccccccccccccccchhhccccchhccccccccchhHHhhhhhhccccCCCCchhhhhhhhhcccc
Q psy1089 76 ESYIWFSEESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEP 155 (404)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (404)
... .
T Consensus 627 -------------------------------------~~~---------------------------------------~ 630 (866)
T COG0553 627 -------------------------------------ADS---------------------------------------D 630 (866)
T ss_pred -------------------------------------hcc---------------------------------------c
Confidence 000 0
Q ss_pred CCCCCCCCCCcchhhhhhHHHhhhhhhhHHHHHHHHHHHhCCCCccccC-CcccCCC--------cccccccccccCC-c
Q psy1089 156 CENSSNAQDVPSAEEKNVDEILHHVNVKMTNVTMVLRNIISHPYLINKP-YRIVDGK--------KEMVCDENIVSSS-G 225 (404)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~ic~hP~L~~~~-~~~~~~~--------~~~~~~~~~~~~S-~ 225 (404)
+ ... .. ....+++.++.||++|+||.++... ....... .........+..| +
T Consensus 631 ~----------------~~~-~~-~~~~~l~~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 692 (866)
T COG0553 631 E----------------NRI-GD-SELNILALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKG 692 (866)
T ss_pred c----------------ccc-cc-hhhHHHHHHHHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccch
Confidence 0 000 00 2356889999999999999998875 2211110 1111223456678 9
Q ss_pred HHHHHHHHH-HHhhhCCC--eEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccc
Q psy1089 226 KMIVLNQLL-HKLKQTNH--KTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRA 302 (404)
Q Consensus 226 Kl~~L~~ll-~~l~~~~~--KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a 302 (404)
|+..+.+++ ..+...+. +++||++|+.++++++..|...++.+++++|+++...|+..++.|+++++..|+++++++
T Consensus 693 k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~ka 772 (866)
T COG0553 693 KLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKA 772 (866)
T ss_pred HHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecc
Confidence 999999999 78888888 999999999999999999999999999999999999999999999998889999999999
Q ss_pred cccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHhcCCccccchhhhccccccc
Q psy1089 303 GGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDSSGSVSWSSQSVKEKLPIGF 382 (404)
Q Consensus 303 ~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~~K~~~~~~~~~~~~l~~~~ 382 (404)
||.|+||++|++||++|++|||..+.||++|+||+||+++|.||+++++||+||+|++++..|. .... ..
T Consensus 773 gg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~------~l~~----~~ 842 (866)
T COG0553 773 GGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQ------ELLD----SL 842 (866)
T ss_pred cccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCcHHHHHHHHHHHHH------HHHH----HH
Confidence 9999999999999999999999999999999999999999999999999999999999988773 2222 33
Q ss_pred cc-ccCcceecccHHHHHhhh
Q psy1089 383 MC-VTGSFLKSSSFFTYLQTY 402 (404)
Q Consensus 383 ~~-~~~~~~~~~~~~~~~~~~ 402 (404)
+. ...+....++.+.++.++
T Consensus 843 ~~~~~~~~~~~~~~~~~~~l~ 863 (866)
T COG0553 843 IDAEGEKELSKLSIEDLLDLF 863 (866)
T ss_pred hhhhcccchhhccHHHHHHHh
Confidence 33 355677777777776654
No 12
>KOG1002|consensus
Probab=100.00 E-value=3.9e-36 Score=293.73 Aligned_cols=249 Identities=26% Similarity=0.389 Sum_probs=210.8
Q ss_pred cccccchhhhhhhchhhc--cCCCCeeEEEecCCCHHHHHHHHHHHhhhhhhhhhhHHhhhccccccCCCCCCCCCcccc
Q psy1089 2 HNILKPFFLRRLKCDVNL--NLPPKKTTVIDCPMVPAQELMYTKVLTKTIGENREQVAEYFNTTVNTSSSSDSSGNESYI 79 (404)
Q Consensus 2 ~~ll~pf~LRR~K~~V~~--~LP~K~~~~v~~~lt~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (404)
|.+|+.+||||+|-+-.. .|||+...+-+=-++..+..+|+.+...+.+++...+++
T Consensus 436 h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~eE~D~YeSLY~dSkrkfntyiee--------------------- 494 (791)
T KOG1002|consen 436 HTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFNEEEKDLYESLYKDSKRKFNTYIEE--------------------- 494 (791)
T ss_pred HHHHHHHHHHHhhcccccccCCCccceeeehhhhhhHHHHHHHHHHHhhHHhhhhHHhh---------------------
Confidence 678999999999965332 799999999999999999999999998887766544222
Q ss_pred hhccccccccccccccccccccccchhhccccchhccccccccchhHHhhhhhhccccCCCCchhhhhhhhhccccCCCC
Q psy1089 80 WFSEESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEPCENS 159 (404)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (404)
T Consensus 495 -------------------------------------------------------------------------------- 494 (791)
T KOG1002|consen 495 -------------------------------------------------------------------------------- 494 (791)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcchhhhhhHHHhhhhhhhHHHHHHHHHHHhCCCCccccCCcccCCCc---------------------------
Q psy1089 160 SNAQDVPSAEEKNVDEILHHVNVKMTNVTMVLRNIISHPYLINKPYRIVDGKK--------------------------- 212 (404)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~ic~hP~L~~~~~~~~~~~~--------------------------- 212 (404)
..+...+++++.++++|||...||+|+..+........
T Consensus 495 ---------------GvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~aed~i~s~ChH~FC 559 (791)
T KOG1002|consen 495 ---------------GVVLNNYANIFTLITRMRQAADHPDLVLYSANANLPDENKGEVECGLCHDPAEDYIESSCHHKFC 559 (791)
T ss_pred ---------------hhhhhhHHHHHHHHHHHHHhccCcceeeehhhcCCCccccCceeecccCChhhhhHhhhhhHHHH
Confidence 11344678999999999999999999865211000000
Q ss_pred ---------------ccc---------------------------------cccccccCCcHHHHHHHHHHHhhhC--CC
Q psy1089 213 ---------------EMV---------------------------------CDENIVSSSGKMIVLNQLLHKLKQT--NH 242 (404)
Q Consensus 213 ---------------~~~---------------------------------~~~~~~~~S~Kl~~L~~ll~~l~~~--~~ 242 (404)
+.. ....-+.+|.|+++|.+-|..+.+. .-
T Consensus 560 rlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~EEl~~l~~rd~t~ 639 (791)
T KOG1002|consen 560 RLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALEKTDLKGFKASSILNRINMDDWQSSTKIEALVEELYFLRERDRTA 639 (791)
T ss_pred HHHHHHHHHhhhcccCCCCccccccccccccchhhhhcchhhhhhHHHhhhcchhhhcchhHHHHHHHHHHHHHHcccch
Confidence 000 0011355789999999988877654 36
Q ss_pred eEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEecCCC
Q psy1089 243 KTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDW 322 (404)
Q Consensus 243 KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~d~~w 322 (404)
|.||||||+.++|+|.-.|...|+.++.+.|++++..|...|+.|.++++|.|+|+|.+|||+.|||+.|++|+++||+|
T Consensus 640 KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWW 719 (791)
T KOG1002|consen 640 KSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWW 719 (791)
T ss_pred hhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHhcCC
Q psy1089 323 NPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDSSGS 366 (404)
Q Consensus 323 np~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~~K~ 366 (404)
||+.+.||.+|+||+||.++|+|.+|+.++||||+|.+++++|.
T Consensus 720 NpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa 763 (791)
T KOG1002|consen 720 NPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKA 763 (791)
T ss_pred cHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999988773
No 13
>KOG1015|consensus
Probab=100.00 E-value=8.5e-36 Score=307.54 Aligned_cols=146 Identities=39% Similarity=0.656 Sum_probs=137.7
Q ss_pred cCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhc----------------------CCceEeccCCcCHHH
Q psy1089 222 SSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLE----------------------NYNYYRLHGSIRNEE 279 (404)
Q Consensus 222 ~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~----------------------gi~~~~i~G~~~~~~ 279 (404)
..|+||..|.++|+.+.+-|.|+|||||+...|++|+.+|... |..|.+|+|++...+
T Consensus 1123 ~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~ 1202 (1567)
T KOG1015|consen 1123 EHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQS 1202 (1567)
T ss_pred hcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHH
Confidence 4699999999999999999999999999999999999999632 678999999999999
Q ss_pred HHHHHHHHhCCC--CceEEEeeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHH
Q psy1089 280 RNDAVQQFNGST--EWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVH 357 (404)
Q Consensus 280 R~~~i~~F~~~~--~~~vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~ 357 (404)
|++..++||+.. ..+++||||+||+.||||.+||.||+||-.|||..+.|++-|+||+||+++|+||||++.||+||+
T Consensus 1203 R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEeK 1282 (1567)
T KOG1015|consen 1203 RKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEEK 1282 (1567)
T ss_pred HHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHHHH
Confidence 999999999987 457899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCc
Q psy1089 358 LFTIDSSGSV 367 (404)
Q Consensus 358 i~~~~~~K~~ 367 (404)
||+++=.|+.
T Consensus 1283 IYkRQVTKqs 1292 (1567)
T KOG1015|consen 1283 IYKRQVTKQS 1292 (1567)
T ss_pred HHHHHHhHhh
Confidence 9999887764
No 14
>KOG4439|consensus
Probab=100.00 E-value=1.4e-34 Score=292.55 Aligned_cols=215 Identities=23% Similarity=0.317 Sum_probs=177.9
Q ss_pred hhhhhhHHHHHHHHHHHhCCCCccccCCcccCCCccc--------------------------------------ccccc
Q psy1089 178 HHVNVKMTNVTMVLRNIISHPYLINKPYRIVDGKKEM--------------------------------------VCDEN 219 (404)
Q Consensus 178 ~~~~~~l~~~l~~Lr~ic~hP~L~~~~~~~~~~~~~~--------------------------------------~~~~~ 219 (404)
.+..++++..+++|||+|.||.+.....+........ .....
T Consensus 644 ~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~sde~~~e~~~l~el~k~~~T~~~~D~~ed~p~~~~~q~Fe 723 (901)
T KOG4439|consen 644 FEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGGDDSDEEQLEEDNLAELEKNDETDCSDDNCEDLPTAFPDQAFE 723 (901)
T ss_pred hhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCcchhhhhhhhhhHHHhhhhcccccccccccccccccchhhhcc
Confidence 3456779999999999999997776544322111000 00112
Q ss_pred cccCCcHHHHHHHHHHHh-hhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCC-CceEEE
Q psy1089 220 IVSSSGKMIVLNQLLHKL-KQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGST-EWGVFL 297 (404)
Q Consensus 220 ~~~~S~Kl~~L~~ll~~l-~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~-~~~vlL 297 (404)
....|.|+..+.+.++.+ ....+|++|.++++.++.+++.++...|..|..++|.+..++|+.+++.|+... +.+|+|
T Consensus 724 ~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmL 803 (901)
T KOG4439|consen 724 PDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVML 803 (901)
T ss_pred cccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEE
Confidence 344789999999999988 457899999999999999999999999999999999999999999999999877 489999
Q ss_pred eeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHhcCCccccchhhhcc
Q psy1089 298 LSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDSSGSVSWSSQSVKEK 377 (404)
Q Consensus 298 is~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~~K~~~~~~~~~~~~ 377 (404)
++..+||.||||.+|+|+|++|++|||+.+.||.+|++|+||+++|+||||+++||+|++|...++.|. .
T Consensus 804 lSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTvEqrV~~LQdkKl----------d 873 (901)
T KOG4439|consen 804 LSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTVEQRVKSLQDKKL----------D 873 (901)
T ss_pred EEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEEEEecCcHHHHHHHHHHHHH----------H
Confidence 999999999999999999999999999999999999999999999999999999999999999977663 3
Q ss_pred cccccccccCc-ceecccHHHHHhhh
Q psy1089 378 LPIGFMCVTGS-FLKSSSFFTYLQTY 402 (404)
Q Consensus 378 l~~~~~~~~~~-~~~~~~~~~~~~~~ 402 (404)
++.+.++.+.- .+..+|+.++=.||
T Consensus 874 lA~~VL~G~~tr~~~kLT~adlk~LF 899 (901)
T KOG4439|consen 874 LAKGVLTGSATRKMNKLTLADLKKLF 899 (901)
T ss_pred HHhhhccCccccccccccHHHHHHHh
Confidence 44455553332 56777777765554
No 15
>KOG1000|consensus
Probab=99.97 E-value=5.4e-30 Score=250.99 Aligned_cols=145 Identities=30% Similarity=0.367 Sum_probs=134.6
Q ss_pred cHHHHHHHHHHH----hhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeec
Q psy1089 225 GKMIVLNQLLHK----LKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLST 300 (404)
Q Consensus 225 ~Kl~~L~~ll~~----l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~ 300 (404)
.|+..+.+.|.. .-..+.|++||+++..++|.|+..+..+++.+.+|||+++..+|+..++.|+..+++.|.+++.
T Consensus 472 aK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsI 551 (689)
T KOG1000|consen 472 AKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSI 551 (689)
T ss_pred cccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEE
Confidence 466666666655 3456789999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHhcCCccc
Q psy1089 301 RAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDSSGSVSW 369 (404)
Q Consensus 301 ~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~~K~~~~ 369 (404)
.|||.||+|++|+.|+|.+++|||....||++|+||+||+..|.||+|+++||+||.+|..+++|-..+
T Consensus 552 tA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl 620 (689)
T KOG1000|consen 552 TAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVL 620 (689)
T ss_pred eecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999984333
No 16
>KOG1016|consensus
Probab=99.95 E-value=1.8e-28 Score=249.47 Aligned_cols=147 Identities=35% Similarity=0.629 Sum_probs=136.7
Q ss_pred cccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhc------------------CCceEeccCCcCHHHHH
Q psy1089 220 IVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLE------------------NYNYYRLHGSIRNEERN 281 (404)
Q Consensus 220 ~~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~------------------gi~~~~i~G~~~~~~R~ 281 (404)
+.+.++|+-.+.+++.+-..-|+|+|||++....++.|++.|... +.++.+++|.++..+|+
T Consensus 698 vLen~pk~V~~~~~~des~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~re 777 (1387)
T KOG1016|consen 698 VLENGPKIVISLEILDESTQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADRE 777 (1387)
T ss_pred cccCCCceEEEEeeeccccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHH
Confidence 456788888888888887788999999999999999999999755 34578999999999999
Q ss_pred HHHHHHhCCCCce-EEEeeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHH
Q psy1089 282 DAVQQFNGSTEWG-VFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFT 360 (404)
Q Consensus 282 ~~i~~F~~~~~~~-vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~ 360 (404)
+.|++||..+++. .+++++++|..|+||..|+.+|+||..|||....||+.|++|+||+++|.|||||+.+|+|..||.
T Consensus 778 kLinqfN~e~~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIyd 857 (1387)
T KOG1016|consen 778 KLINQFNSEPGLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYD 857 (1387)
T ss_pred HHHHhccCCCCceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHH
Confidence 9999999999888 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCC
Q psy1089 361 IDSSGS 366 (404)
Q Consensus 361 ~~~~K~ 366 (404)
|+=+|+
T Consensus 858 RQIsKq 863 (1387)
T KOG1016|consen 858 RQISKQ 863 (1387)
T ss_pred HHHhhc
Confidence 988885
No 17
>KOG1001|consensus
Probab=99.94 E-value=4.1e-28 Score=254.80 Aligned_cols=143 Identities=30% Similarity=0.473 Sum_probs=134.0
Q ss_pred CcHHHHHHHHHHHhhhCC-CeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccc
Q psy1089 224 SGKMIVLNQLLHKLKQTN-HKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRA 302 (404)
Q Consensus 224 S~Kl~~L~~ll~~l~~~~-~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a 302 (404)
|.|+..+.+++....... .+++|||+++.+++.+...|...|+.+.+++|.++...|.+.+..|..++...|++++.++
T Consensus 521 s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slka 600 (674)
T KOG1001|consen 521 SSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKA 600 (674)
T ss_pred hhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHH
Confidence 677777877777443333 4999999999999999999999999999999999999999999999998899999999999
Q ss_pred cccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHhcCC
Q psy1089 303 GGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDSSGS 366 (404)
Q Consensus 303 ~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~~K~ 366 (404)
||.||||++|+||+.+|++|||..+.||++|+||+||+++|.|++++..+|+||+|.+++++|+
T Consensus 601 g~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq~~K~ 664 (674)
T KOG1001|consen 601 GKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQEKKR 664 (674)
T ss_pred hhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999986
No 18
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.92 E-value=1.4e-24 Score=235.86 Aligned_cols=141 Identities=24% Similarity=0.247 Sum_probs=130.3
Q ss_pred CCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHH-HhcCCceEeccCCcCHHHHHHHHHHHhCCC-CceEEEeec
Q psy1089 223 SSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELC-VLENYNYYRLHGSIRNEERNDAVQQFNGST-EWGVFLLST 300 (404)
Q Consensus 223 ~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L-~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~-~~~vlLis~ 300 (404)
.++|+..|.+++... .++|+||||++..+++.|...| ...|+++..+||+++..+|.++++.|++++ ++. +|+++
T Consensus 477 ~d~Ki~~L~~~L~~~--~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~-VLIsT 553 (956)
T PRK04914 477 FDPRVEWLIDFLKSH--RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQ-VLLCS 553 (956)
T ss_pred cCHHHHHHHHHHHhc--CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCcc-EEEec
Confidence 368999999999865 3789999999999999999999 567999999999999999999999999865 444 56677
Q ss_pred cccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHhcCC
Q psy1089 301 RAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDSSGS 366 (404)
Q Consensus 301 ~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~~K~ 366 (404)
++||+|+|++.|++||+||+||||..|.||+||+||+||+++|.||.++.++|+|+.|++....|-
T Consensus 554 dvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l 619 (956)
T PRK04914 554 EIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGL 619 (956)
T ss_pred hhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999999999999999999999999988875
No 19
>KOG0383|consensus
Probab=99.87 E-value=1.4e-22 Score=210.92 Aligned_cols=180 Identities=34% Similarity=0.539 Sum_probs=153.1
Q ss_pred CcccccchhhhhhhchhhccCCCCeeEEEecCCCHHHHHHHHHHHhhhhhhhhhhHHhhhccccccCCCCCCCCCcccch
Q psy1089 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTIGENREQVAEYFNTTVNTSSSSDSSGNESYIW 80 (404)
Q Consensus 1 l~~ll~pf~LRR~K~~V~~~LP~K~~~~v~~~lt~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (404)
||.++.|+||||.|.||++.+|+|.+.++.+.|++.|+++|+.++.+......
T Consensus 516 l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~--------------------------- 568 (696)
T KOG0383|consen 516 LHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNWQGLL--------------------------- 568 (696)
T ss_pred hccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCChHHHh---------------------------
Confidence 68999999999999999999999999999999999999999999977511110
Q ss_pred hccccccccccccccccccccccchhhccccchhccccccccchhHHhhhhhhccccCCCCchhhhhhhhhccccCCCCC
Q psy1089 81 FSEESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEPCENSS 160 (404)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (404)
T Consensus 569 -------------------------------------------------------------------------------- 568 (696)
T KOG0383|consen 569 -------------------------------------------------------------------------------- 568 (696)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcchhhhhhHHHhhhhhhhHHHHHHHHHHHhCCCCccccCCcccCCCcccccccccccCCcHHHHHHHHHHHhhhC
Q psy1089 161 NAQDVPSAEEKNVDEILHHVNVKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQT 240 (404)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~ic~hP~L~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~ll~~l~~~ 240 (404)
.......+.+++|.||++|+|||+.....+... ........++..|+|+..|..+++.+...
T Consensus 569 ----------------~~~~~~s~~n~~mel~K~~~hpy~~~~~e~~~~--~~~~~~~~l~k~~~k~~~l~~~~~~l~~~ 630 (696)
T KOG0383|consen 569 ----------------AGVHQYSLLNIVMELRKQCNHPYLSPLEEPLEE--NGEYLGSALIKASGKLTLLLKMLKKLKSS 630 (696)
T ss_pred ----------------hcchhHHHHHHHHHHHHhhcCcccCcccccccc--chHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 011224688999999999999999987222111 11122334677899999999999999999
Q ss_pred CCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCC-CceEEEeeccccccC
Q psy1089 241 NHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGST-EWGVFLLSTRAGGQG 306 (404)
Q Consensus 241 ~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~-~~~vlLis~~a~g~G 306 (404)
|+||+||++++.++|+++.++...+ .|.+++|+.+..+|+.++++||..+ +-.|+|+||++||.|
T Consensus 631 ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 631 GHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred chhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 9999999999999999999999999 9999999999999999999999654 778999999999987
No 20
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.74 E-value=1.9e-17 Score=139.85 Aligned_cols=120 Identities=28% Similarity=0.406 Sum_probs=110.8
Q ss_pred cHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccc
Q psy1089 225 GKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGG 304 (404)
Q Consensus 225 ~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g 304 (404)
+|...+..++......+.++|||+.+...++.+...|...+.++..++|+++..+|..+++.|+++. ..+|+++.+++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~--~~ili~t~~~~ 89 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGE--IVVLVATDVIA 89 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCC--CcEEEEcChhh
Confidence 6999999999887667889999999999999999999988999999999999999999999999985 44677889999
Q ss_pred cCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEE
Q psy1089 305 QGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIY 346 (404)
Q Consensus 305 ~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy 346 (404)
+|+|++.+++||+++++|++..+.|++||++|.||...|.+|
T Consensus 90 ~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 90 RGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 999999999999999999999999999999999998777664
No 21
>PRK13766 Hef nuclease; Provisional
Probab=99.73 E-value=2.1e-17 Score=180.30 Aligned_cols=143 Identities=17% Similarity=0.265 Sum_probs=127.2
Q ss_pred cCCcHHHHHHHHHHHhh--hCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCC--------cCHHHHHHHHHHHhCCC
Q psy1089 222 SSSGKMIVLNQLLHKLK--QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGS--------IRNEERNDAVQQFNGST 291 (404)
Q Consensus 222 ~~S~Kl~~L~~ll~~l~--~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~--------~~~~~R~~~i~~F~~~~ 291 (404)
...+|+..|.++|.+.. ..+.|+||||++..+++.|...|...|+++..++|. ++..+|.+++++|+++.
T Consensus 344 ~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~ 423 (773)
T PRK13766 344 IEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGE 423 (773)
T ss_pred cCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCC
Confidence 45789999999999876 477899999999999999999999999999999987 88899999999999984
Q ss_pred CceEEEeeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHhcCCccc
Q psy1089 292 EWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDSSGSVSW 369 (404)
Q Consensus 292 ~~~vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~~K~~~~ 369 (404)
.. +|++|.++++|+|++.+++||+||++||+..+.|+.||++|.|+ ..||.|++.+|.||.+|....+|+..+
T Consensus 424 -~~-vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~---~~v~~l~~~~t~ee~~y~~~~~ke~~~ 496 (773)
T PRK13766 424 -FN-VLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE---GRVVVLIAKGTRDEAYYWSSRRKEKKM 496 (773)
T ss_pred -CC-EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC---CEEEEEEeCCChHHHHHHHhhHHHHHH
Confidence 44 56777899999999999999999999999999998888888765 689999999999999998776655444
No 22
>KOG0331|consensus
Probab=99.70 E-value=1.1e-16 Score=162.17 Aligned_cols=149 Identities=17% Similarity=0.280 Sum_probs=122.4
Q ss_pred HHhCCCCccccCCc-ccCCCcccccccccccCCcHHHHHHHHHHHhh-hCCCeEEEEecchHHHHHHHHHHHhcCCceEe
Q psy1089 193 NIISHPYLINKPYR-IVDGKKEMVCDENIVSSSGKMIVLNQLLHKLK-QTNHKTLVFSTMVKVLNFIEELCVLENYNYYR 270 (404)
Q Consensus 193 ~ic~hP~L~~~~~~-~~~~~~~~~~~~~~~~~S~Kl~~L~~ll~~l~-~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~ 270 (404)
.+.++|.-+..... .......+.+....+...+|...|.++|.... ..+.|+||||+..+.++.|+..|+..++++..
T Consensus 291 ~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~ 370 (519)
T KOG0331|consen 291 DFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVA 370 (519)
T ss_pred HHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceee
Confidence 34445655544332 11222233334445567899999999999886 45679999999999999999999999999999
Q ss_pred ccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcE
Q psy1089 271 LHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPV 343 (404)
Q Consensus 271 i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V 343 (404)
|||..++.+|..+++.|++|. + -+|++|+++++|||+...++||+||+|-|...|.||+||++|.|++-..
T Consensus 371 iHGd~sQ~eR~~~L~~FreG~-~-~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A 441 (519)
T KOG0331|consen 371 IHGDKSQSERDWVLKGFREGK-S-PVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTA 441 (519)
T ss_pred ecccccHHHHHHHHHhcccCC-c-ceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceE
Confidence 999999999999999999995 2 3678889999999999999999999999999999999999998887643
No 23
>KOG0328|consensus
Probab=99.68 E-value=4e-16 Score=144.64 Aligned_cols=163 Identities=17% Similarity=0.251 Sum_probs=128.1
Q ss_pred HHHHHHHHhCCCCccccCCcccCCCcccccccccccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCC
Q psy1089 187 VTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENY 266 (404)
Q Consensus 187 ~l~~Lr~ic~hP~L~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi 266 (404)
++..-.+++.+|.-+....+..............-..-=|+..|+++...+ .-...+|||+..+..++|.+.++..++
T Consensus 214 ilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd~L--tItQavIFcnTk~kVdwLtekm~~~nf 291 (400)
T KOG0328|consen 214 ILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANF 291 (400)
T ss_pred HHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHHHHHhhhh--ehheEEEEecccchhhHHHHHHHhhCc
Confidence 344557788888655443232222111111112222334999999999876 345899999999999999999999999
Q ss_pred ceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEE
Q psy1089 267 NYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIY 346 (404)
Q Consensus 267 ~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy 346 (404)
.+..+||.+++++|.+++.+|+.+.+ .+|+++++-++|+|.+..+.||+||+|-|+..|+||+||.||+|.+. .+.
T Consensus 292 tVssmHGDm~qkERd~im~dFRsg~S--rvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkG--vai 367 (400)
T KOG0328|consen 292 TVSSMHGDMEQKERDKIMNDFRSGKS--RVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKG--VAI 367 (400)
T ss_pred eeeeccCCcchhHHHHHHHHhhcCCc--eEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcc--eEE
Confidence 99999999999999999999999953 47889999999999999999999999999999999999999999775 556
Q ss_pred EEEeCCCHH
Q psy1089 347 RLVSHSTYQ 355 (404)
Q Consensus 347 ~Li~~~TiE 355 (404)
.||..+.++
T Consensus 368 nFVk~~d~~ 376 (400)
T KOG0328|consen 368 NFVKSDDLR 376 (400)
T ss_pred EEecHHHHH
Confidence 777766544
No 24
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.66 E-value=1.2e-15 Score=161.66 Aligned_cols=134 Identities=22% Similarity=0.248 Sum_probs=115.0
Q ss_pred cCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecc
Q psy1089 222 SSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTR 301 (404)
Q Consensus 222 ~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~ 301 (404)
.+..|+..+..++......++|+||||++...++.+...| + +..++|+++..+|.+++++|++++.+.+++++ +
T Consensus 477 ~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L---~--~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~S-k 550 (732)
T TIGR00603 477 MNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL---G--KPFIYGPTSQQERMQILQNFQHNPKVNTIFLS-K 550 (732)
T ss_pred hChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---C--CceEECCCCHHHHHHHHHHHHhCCCccEEEEe-c
Confidence 4567888888888876668899999999998888887776 3 34589999999999999999976556665555 9
Q ss_pred ccccCCCCCCCCEEEEecCCC-CchhHHHHHHhhhccCCCCc-----EEEEEEEeCCCHHHHHHHH
Q psy1089 302 AGGQGLNLTAADTCILYDSDW-NPQVDIQAEARCHRIGQTKP-----VCIYRLVSHSTYQVHLFTI 361 (404)
Q Consensus 302 a~g~GlnL~~a~~VI~~d~~w-np~~~~Qa~gR~~R~Gq~~~-----V~Vy~Li~~~TiEe~i~~~ 361 (404)
+|++|+|++.|++||++++++ ++..+.||.||++|.+..+. +.+|.||+++|.|+..-.+
T Consensus 551 VgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~ 616 (732)
T TIGR00603 551 VGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTK 616 (732)
T ss_pred ccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHH
Confidence 999999999999999999986 89999999999999987643 7999999999999987544
No 25
>KOG0333|consensus
Probab=99.65 E-value=9e-16 Score=152.52 Aligned_cols=156 Identities=19% Similarity=0.269 Sum_probs=130.2
Q ss_pred HHHHhCCCCccccCCcccCCCcccccccccccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEe
Q psy1089 191 LRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYR 270 (404)
Q Consensus 191 Lr~ic~hP~L~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~ 270 (404)
+|.....|..+.....-.... ...+....+..+.|+..|.++|... ..+.+|||.+....++.|++.|.+.|+.++.
T Consensus 470 ar~ylr~pv~vtig~~gk~~~-rveQ~v~m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~t 546 (673)
T KOG0333|consen 470 ARSYLRRPVVVTIGSAGKPTP-RVEQKVEMVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTT 546 (673)
T ss_pred HHHHhhCCeEEEeccCCCCcc-chheEEEEecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEE
Confidence 467788898776644332221 3334445667788999999999865 5679999999999999999999999999999
Q ss_pred ccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEe
Q psy1089 271 LHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVS 350 (404)
Q Consensus 271 i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~ 350 (404)
+||+.++++|+.++..|+++. .-+|++|+++|+|||+++.++||+||+.-+-.+|.|||||++|.|+.. ++..|++
T Consensus 547 lHg~k~qeQRe~aL~~fr~~t--~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~G--taiSflt 622 (673)
T KOG0333|consen 547 LHGGKSQEQRENALADFREGT--GDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSG--TAISFLT 622 (673)
T ss_pred eeCCccHHHHHHHHHHHHhcC--CCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCc--eeEEEec
Confidence 999999999999999999974 337888999999999999999999999999999999999999999876 4445555
Q ss_pred CCC
Q psy1089 351 HST 353 (404)
Q Consensus 351 ~~T 353 (404)
+..
T Consensus 623 ~~d 625 (673)
T KOG0333|consen 623 PAD 625 (673)
T ss_pred cch
Confidence 543
No 26
>PTZ00110 helicase; Provisional
Probab=99.64 E-value=3.7e-15 Score=156.18 Aligned_cols=130 Identities=20% Similarity=0.320 Sum_probs=116.1
Q ss_pred cccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEee
Q psy1089 220 IVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLS 299 (404)
Q Consensus 220 ~~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis 299 (404)
.+....|...|.+++..+...+.++||||+....++.|...|...|+++..+||++++++|..+++.|+++. +. +|++
T Consensus 356 ~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~-~~-ILVa 433 (545)
T PTZ00110 356 VVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGK-SP-IMIA 433 (545)
T ss_pred EEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCC-Cc-EEEE
Confidence 445667899999999887767889999999999999999999999999999999999999999999999985 33 6788
Q ss_pred ccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCC
Q psy1089 300 TRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHST 353 (404)
Q Consensus 300 ~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~T 353 (404)
|+++++|||++.+++||+||+|+++..|.||+||++|.|.+. .+|.|++.+.
T Consensus 434 Tdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G--~ai~~~~~~~ 485 (545)
T PTZ00110 434 TDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKG--ASYTFLTPDK 485 (545)
T ss_pred cchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCc--eEEEEECcch
Confidence 899999999999999999999999999999999999999875 4466666653
No 27
>KOG0330|consensus
Probab=99.64 E-value=1.9e-15 Score=145.65 Aligned_cols=136 Identities=22% Similarity=0.318 Sum_probs=118.7
Q ss_pred cccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEee
Q psy1089 220 IVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLS 299 (404)
Q Consensus 220 ~~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis 299 (404)
.+..--|-..|..+|.+. .|..+||||+.....+.+.-.|+..|+.+..+||.+++..|..+++.|+++. +-+|++
T Consensus 281 fv~~k~K~~yLV~ll~e~--~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~--r~iLv~ 356 (476)
T KOG0330|consen 281 FVPGKDKDTYLVYLLNEL--AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGA--RSILVC 356 (476)
T ss_pred eccccccchhHHHHHHhh--cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccC--CcEEEe
Confidence 344556777889999866 4589999999999999999999999999999999999999999999999984 337888
Q ss_pred ccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHh
Q psy1089 300 TRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDS 363 (404)
Q Consensus 300 ~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~ 363 (404)
|++|++|||++.+++||+||.|-+..+|+||.||++|.| +.-.++.||+...+| .|++++
T Consensus 357 TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG--rsG~~ItlVtqyDve--~~qrIE 416 (476)
T KOG0330|consen 357 TDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG--RSGKAITLVTQYDVE--LVQRIE 416 (476)
T ss_pred cchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccC--CCcceEEEEehhhhH--HHHHHH
Confidence 999999999999999999999999999999999999999 556888999995444 444443
No 28
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.61 E-value=1e-15 Score=118.43 Aligned_cols=78 Identities=29% Similarity=0.550 Sum_probs=72.8
Q ss_pred HHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccC
Q psy1089 259 ELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIG 338 (404)
Q Consensus 259 ~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~G 338 (404)
+.|+..|+++..+||+++..+|..+++.|+.+.. .+|+++.++++|+|++.+++||+++++||+..+.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~--~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEI--RVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSS--SEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCc--eEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 3678899999999999999999999999999863 46777899999999999999999999999999999999999987
No 29
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.61 E-value=5.6e-15 Score=147.08 Aligned_cols=146 Identities=17% Similarity=0.240 Sum_probs=127.2
Q ss_pred CcHHHHHHHHHHHhh--hCCCeEEEEecchHHHHHHHHHHHhcCCceE-ecc--------CCcCHHHHHHHHHHHhCCCC
Q psy1089 224 SGKMIVLNQLLHKLK--QTNHKTLVFSTMVKVLNFIEELCVLENYNYY-RLH--------GSIRNEERNDAVQQFNGSTE 292 (404)
Q Consensus 224 S~Kl~~L~~ll~~l~--~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~-~i~--------G~~~~~~R~~~i~~F~~~~~ 292 (404)
-+|+..+.+++.+.. ..+.++|||++|..+.+.|..+|...|+... ++- .++++.+..+++++|+.|.
T Consensus 347 HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge- 425 (542)
T COG1111 347 HPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGE- 425 (542)
T ss_pred CccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCC-
Confidence 579999999999876 4678999999999999999999999988874 443 3699999999999999995
Q ss_pred ceEEEeeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHhcCCccccch
Q psy1089 293 WGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDSSGSVSWSSQ 372 (404)
Q Consensus 293 ~~vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~~K~~~~~~~ 372 (404)
+. +|++|..|.+|||++..+.||+||+.-++-..+||.||+||. +.-+||-|+++||-||.-|...-+|...+.+.
T Consensus 426 ~n-VLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~---r~Grv~vLvt~gtrdeayy~~s~rke~~m~e~ 501 (542)
T COG1111 426 YN-VLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK---RKGRVVVLVTEGTRDEAYYYSSRRKEQKMIES 501 (542)
T ss_pred ce-EEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC---CCCeEEEEEecCchHHHHHHHHHHHHHHHHHH
Confidence 33 677889999999999999999999999999999999999885 56689999999999999999988876555554
Q ss_pred hh
Q psy1089 373 SV 374 (404)
Q Consensus 373 ~~ 374 (404)
..
T Consensus 502 i~ 503 (542)
T COG1111 502 IR 503 (542)
T ss_pred HH
Confidence 44
No 30
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=9.8e-15 Score=151.84 Aligned_cols=168 Identities=20% Similarity=0.291 Sum_probs=128.6
Q ss_pred HHHHHhCCCCccccCCccc-CCCcccccccccccCC-cHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCc
Q psy1089 190 VLRNIISHPYLINKPYRIV-DGKKEMVCDENIVSSS-GKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYN 267 (404)
Q Consensus 190 ~Lr~ic~hP~L~~~~~~~~-~~~~~~~~~~~~~~~S-~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~ 267 (404)
..+..+.+|..+....... .......+....+... .|+..|..++... ...++||||.....++.|...|...|++
T Consensus 222 l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~--~~~~~IVF~~tk~~~~~l~~~l~~~g~~ 299 (513)
T COG0513 222 LARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDE--DEGRVIVFVRTKRLVEELAESLRKRGFK 299 (513)
T ss_pred HHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHHhcC--CCCeEEEEeCcHHHHHHHHHHHHHCCCe
Confidence 3466777887655542211 0112222222233333 4999999999854 3347999999999999999999999999
Q ss_pred eEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEE
Q psy1089 268 YYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYR 347 (404)
Q Consensus 268 ~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~ 347 (404)
+..|||++++++|.++++.|+++. .. +|++|+++++|||+...++||+||+|.++..|.||+||++|.|.+. ..+.
T Consensus 300 ~~~lhG~l~q~~R~~~l~~F~~g~-~~-vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G--~ai~ 375 (513)
T COG0513 300 VAALHGDLPQEERDRALEKFKDGE-LR-VLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKG--VAIS 375 (513)
T ss_pred EEEecCCCCHHHHHHHHHHHHcCC-CC-EEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCC--eEEE
Confidence 999999999999999999999885 33 6777899999999999999999999999999999999999999554 5666
Q ss_pred EEeCCCHHHHHHHHHhc
Q psy1089 348 LVSHSTYQVHLFTIDSS 364 (404)
Q Consensus 348 Li~~~TiEe~i~~~~~~ 364 (404)
|++. .-|...+...++
T Consensus 376 fv~~-~~e~~~l~~ie~ 391 (513)
T COG0513 376 FVTE-EEEVKKLKRIEK 391 (513)
T ss_pred EeCc-HHHHHHHHHHHH
Confidence 7766 235555555444
No 31
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.57 E-value=2.4e-14 Score=145.93 Aligned_cols=124 Identities=17% Similarity=0.237 Sum_probs=108.8
Q ss_pred CCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccc
Q psy1089 223 SSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRA 302 (404)
Q Consensus 223 ~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a 302 (404)
...|+..|..++.. ....++||||+....++.+...|...|+++..+||+++.++|..+++.|+++. +. +|++|++
T Consensus 239 ~~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~-~~-vLVaTdv 314 (423)
T PRK04837 239 NEEKMRLLQTLIEE--EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGD-LD-ILVATDV 314 (423)
T ss_pred HHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCC-Cc-EEEEech
Confidence 35677788777764 24679999999999999999999999999999999999999999999999985 44 6777899
Q ss_pred cccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCC
Q psy1089 303 GGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHS 352 (404)
Q Consensus 303 ~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~ 352 (404)
+++|||++.+++||+||+|+++..|.|++||++|.|+.. .++.|++.+
T Consensus 315 ~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G--~ai~~~~~~ 362 (423)
T PRK04837 315 AARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASG--HSISLACEE 362 (423)
T ss_pred hhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCe--eEEEEeCHH
Confidence 999999999999999999999999999999999999775 445566654
No 32
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.55 E-value=6.1e-14 Score=143.32 Aligned_cols=118 Identities=17% Similarity=0.285 Sum_probs=103.8
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecccc
Q psy1089 224 SGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAG 303 (404)
Q Consensus 224 S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~ 303 (404)
..|...|..++.. ....++||||+....++.+...|...|+.+..+||+++..+|..+++.|+++. +. +|++|+++
T Consensus 230 ~~k~~~l~~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~-~~-vLVaTd~~ 305 (434)
T PRK11192 230 EHKTALLCHLLKQ--PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGR-VN-VLVATDVA 305 (434)
T ss_pred HHHHHHHHHHHhc--CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCC-Cc-EEEEcccc
Confidence 4577777766652 24679999999999999999999999999999999999999999999999984 33 67778999
Q ss_pred ccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEE
Q psy1089 304 GQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCI 345 (404)
Q Consensus 304 g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~V 345 (404)
++|+|++.+++||+||+|+++..|.|++||++|.|....+.+
T Consensus 306 ~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~ 347 (434)
T PRK11192 306 ARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAIS 347 (434)
T ss_pred ccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEE
Confidence 999999999999999999999999999999999998754433
No 33
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.55 E-value=9.4e-14 Score=143.61 Aligned_cols=126 Identities=20% Similarity=0.312 Sum_probs=109.3
Q ss_pred ccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeec
Q psy1089 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLST 300 (404)
Q Consensus 221 ~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~ 300 (404)
...+.|...|..++.. ....++||||+....++.+...|...|+.+..++|+++.++|.++++.|+++. +. +|++|
T Consensus 317 ~~~~~k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~-~~-vLvaT 392 (475)
T PRK01297 317 VAGSDKYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGK-IR-VLVAT 392 (475)
T ss_pred ecchhHHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCC-Cc-EEEEc
Confidence 4456788888777763 24579999999999999999999999999999999999999999999999985 44 56778
Q ss_pred cccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCC
Q psy1089 301 RAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHS 352 (404)
Q Consensus 301 ~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~ 352 (404)
+++++|||+.++++||++++|++...|.|+.||++|.|+.. .++.|+..+
T Consensus 393 ~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g--~~i~~~~~~ 442 (475)
T PRK01297 393 DVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASG--VSISFAGED 442 (475)
T ss_pred cccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCc--eEEEEecHH
Confidence 99999999999999999999999999999999999999765 444555544
No 34
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.53 E-value=1e-13 Score=142.72 Aligned_cols=126 Identities=21% Similarity=0.389 Sum_probs=110.5
Q ss_pred ccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeec
Q psy1089 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLST 300 (404)
Q Consensus 221 ~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~ 300 (404)
.....|+..+..++... .+.++||||+....++.+...|...|+.+..+||++++.+|+.+++.|+++. .. +|++|
T Consensus 224 ~~~~~k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~-~~-vLVaT 299 (460)
T PRK11776 224 VSPDERLPALQRLLLHH--QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRS-CS-VLVAT 299 (460)
T ss_pred eCcHHHHHHHHHHHHhc--CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCC-Cc-EEEEe
Confidence 34455888888888643 4578999999999999999999999999999999999999999999999985 44 66778
Q ss_pred cccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCC
Q psy1089 301 RAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHS 352 (404)
Q Consensus 301 ~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~ 352 (404)
+++++|+|++.+++||+||+|.++..|.||+||++|.|+.. ..|.|++.+
T Consensus 300 dv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G--~ai~l~~~~ 349 (460)
T PRK11776 300 DVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKG--LALSLVAPE 349 (460)
T ss_pred cccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcc--eEEEEEchh
Confidence 99999999999999999999999999999999999999764 456666665
No 35
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.53 E-value=1.1e-13 Score=145.72 Aligned_cols=124 Identities=17% Similarity=0.302 Sum_probs=107.6
Q ss_pred cCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecc
Q psy1089 222 SSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTR 301 (404)
Q Consensus 222 ~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~ 301 (404)
....|+..|..++.. ..+.++||||+....++.|.+.|...|+.+..+||+++..+|..+++.|+++. . -+|++|+
T Consensus 240 ~~~~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~-~-~VLVaTd 315 (572)
T PRK04537 240 ADEEKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQ-L-EILVATD 315 (572)
T ss_pred CHHHHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCC-C-eEEEEeh
Confidence 345677777777653 35789999999999999999999999999999999999999999999999984 3 3677889
Q ss_pred ccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeC
Q psy1089 302 AGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSH 351 (404)
Q Consensus 302 a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~ 351 (404)
++++|||++.+++||+||.|+++..|.|++||++|.|.... .+.|++.
T Consensus 316 v~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~--ai~~~~~ 363 (572)
T PRK04537 316 VAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGD--AISFACE 363 (572)
T ss_pred hhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCce--EEEEecH
Confidence 99999999999999999999999999999999999998654 3445554
No 36
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.52 E-value=9.4e-14 Score=144.96 Aligned_cols=129 Identities=17% Similarity=0.252 Sum_probs=110.8
Q ss_pred ccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHh-cCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEee
Q psy1089 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVL-ENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLS 299 (404)
Q Consensus 221 ~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~-~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis 299 (404)
.....|...|.+++........++|||++.....+.+...|.. .|+.+..+||+++..+|..+++.|+++. .. +|++
T Consensus 347 ~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~-~~-ILVa 424 (518)
T PLN00206 347 VETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGE-VP-VIVA 424 (518)
T ss_pred ccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCC-CC-EEEE
Confidence 4455677788888876555567899999999999999999974 6999999999999999999999999985 44 6788
Q ss_pred ccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCC
Q psy1089 300 TRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHST 353 (404)
Q Consensus 300 ~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~T 353 (404)
|+++++|||++.+++||+||+|.+...|.|++||++|.|... .++.|++.+.
T Consensus 425 Tdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G--~ai~f~~~~~ 476 (518)
T PLN00206 425 TGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKG--TAIVFVNEED 476 (518)
T ss_pred ecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCe--EEEEEEchhH
Confidence 899999999999999999999999999999999999999754 4555666543
No 37
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.50 E-value=2.5e-13 Score=139.74 Aligned_cols=134 Identities=19% Similarity=0.242 Sum_probs=109.2
Q ss_pred cCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecc
Q psy1089 222 SSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTR 301 (404)
Q Consensus 222 ~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~ 301 (404)
....|...+..++.. ....++||||+.....+.+...|...|+.+..+||.++..+|..+++.|+++. +. +|++|+
T Consensus 228 ~~~~k~~~l~~l~~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~-~~-iLVaTd 303 (456)
T PRK10590 228 DKKRKRELLSQMIGK--GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGD-IR-VLVATD 303 (456)
T ss_pred CHHHHHHHHHHHHHc--CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCC-Cc-EEEEcc
Confidence 334455555555542 24579999999999999999999999999999999999999999999999984 44 667889
Q ss_pred ccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHh
Q psy1089 302 AGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDS 363 (404)
Q Consensus 302 a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~ 363 (404)
++++|+|++.+++||+||+|.++..|.|++||++|.|.... .+.|++.+ |..+++..+
T Consensus 304 v~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~--ai~l~~~~--d~~~~~~ie 361 (456)
T PRK10590 304 IAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGE--ALSLVCVD--EHKLLRDIE 361 (456)
T ss_pred HHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCee--EEEEecHH--HHHHHHHHH
Confidence 99999999999999999999999999999999999997754 44455544 444444433
No 38
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.49 E-value=8.8e-14 Score=107.43 Aligned_cols=81 Identities=33% Similarity=0.543 Sum_probs=75.1
Q ss_pred HHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhh
Q psy1089 256 FIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCH 335 (404)
Q Consensus 256 ~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~ 335 (404)
.+...|...++.+..+||+++..+|..+++.|+.+.. .+|+++.++++|+|++.+++||+++++|++..+.|++||++
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~--~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~ 79 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKI--KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAG 79 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCC--eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccc
Confidence 4667788889999999999999999999999999853 67888999999999999999999999999999999999999
Q ss_pred ccC
Q psy1089 336 RIG 338 (404)
Q Consensus 336 R~G 338 (404)
|.|
T Consensus 80 R~g 82 (82)
T smart00490 80 RAG 82 (82)
T ss_pred cCC
Confidence 987
No 39
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.48 E-value=3.4e-13 Score=139.27 Aligned_cols=118 Identities=15% Similarity=0.158 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecccccc
Q psy1089 226 KMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQ 305 (404)
Q Consensus 226 Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~ 305 (404)
++..+...+.. ...+.++||||......+.+...|...|+++..+||+++.++|..+++.|.++. +. +|++|.+.|+
T Consensus 212 ~~~~l~~~l~~-~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~-~~-vLVaT~~~~~ 288 (470)
T TIGR00614 212 ILEDLLRFIRK-EFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDE-IQ-VVVATVAFGM 288 (470)
T ss_pred HHHHHHHHHHH-hcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCC-Cc-EEEEechhhc
Confidence 33344444432 135677899999999999999999999999999999999999999999999884 44 5677899999
Q ss_pred CCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEE
Q psy1089 306 GLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIY 346 (404)
Q Consensus 306 GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy 346 (404)
|||++.+++||++++|.++..|.|++||++|.|+...+.+|
T Consensus 289 GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 289 GINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred cCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 99999999999999999999999999999999988765554
No 40
>KOG0326|consensus
Probab=99.48 E-value=7.5e-14 Score=131.62 Aligned_cols=183 Identities=19% Similarity=0.255 Sum_probs=143.0
Q ss_pred HHHHHHhCCCCccccCCcccCCCcccccccccccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCce
Q psy1089 189 MVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNY 268 (404)
Q Consensus 189 ~~Lr~ic~hP~L~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~ 268 (404)
..+++....||.++...+ .......+++..+..+.|+-.|..+...+.- ...||||++...+++|+......|+++
T Consensus 274 ~Fm~~~l~kPy~INLM~e--Ltl~GvtQyYafV~e~qKvhCLntLfskLqI--NQsIIFCNS~~rVELLAkKITelGysc 349 (459)
T KOG0326|consen 274 GFMDRHLKKPYEINLMEE--LTLKGVTQYYAFVEERQKVHCLNTLFSKLQI--NQSIIFCNSTNRVELLAKKITELGYSC 349 (459)
T ss_pred HHHHHhccCcceeehhhh--hhhcchhhheeeechhhhhhhHHHHHHHhcc--cceEEEeccchHhHHHHHHHHhccchh
Confidence 456777788887776322 2223455677788899999999999987743 478999999999999999999999999
Q ss_pred EeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEE
Q psy1089 269 YRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRL 348 (404)
Q Consensus 269 ~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~L 348 (404)
..+|..+.++.|.+++..|++|. |+ .|++++..-+|+|+++.|.||+||.|-++..|.+|+||.||+|-.. --+.|
T Consensus 350 yyiHakM~Q~hRNrVFHdFr~G~-cr-nLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlG--lAInL 425 (459)
T KOG0326|consen 350 YYIHAKMAQEHRNRVFHDFRNGK-CR-NLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLG--LAINL 425 (459)
T ss_pred hHHHHHHHHhhhhhhhhhhhccc-cc-eeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcc--eEEEE
Confidence 99999999999999999999994 55 4666799999999999999999999999999999999999999543 33455
Q ss_pred EeCCCHHHHHHHHHhcCCccccchhhhcccccccccccCcceecc
Q psy1089 349 VSHSTYQVHLFTIDSSGSVSWSSQSVKEKLPIGFMCVTGSFLKSS 393 (404)
Q Consensus 349 i~~~TiEe~i~~~~~~K~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 393 (404)
|+-+ |...+.+ ...+|..++-+...++.+++
T Consensus 426 itye--drf~L~~------------IE~eLGtEI~pip~~iDk~l 456 (459)
T KOG0326|consen 426 ITYE--DRFNLYR------------IEQELGTEIKPIPSNIDKSL 456 (459)
T ss_pred Eehh--hhhhHHH------------HHHHhccccccCCCcCCccc
Confidence 5432 2222222 23335556667776666654
No 41
>KOG0341|consensus
Probab=99.47 E-value=1.7e-13 Score=132.02 Aligned_cols=162 Identities=19% Similarity=0.287 Sum_probs=126.6
Q ss_pred HHHhCCCCccccCCcccCCCcccccccccccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEec
Q psy1089 192 RNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRL 271 (404)
Q Consensus 192 r~ic~hP~L~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i 271 (404)
+.....|..++....-..+ -+..+..+.+..-+|+-.|.+.|. ....+|||||.....+|.|.++|-.+|+.++.|
T Consensus 376 kSALVKPvtvNVGRAGAAs-ldViQevEyVkqEaKiVylLeCLQ---KT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaI 451 (610)
T KOG0341|consen 376 KSALVKPVTVNVGRAGAAS-LDVIQEVEYVKQEAKIVYLLECLQ---KTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAI 451 (610)
T ss_pred HhhcccceEEecccccccc-hhHHHHHHHHHhhhhhhhHHHHhc---cCCCceEEEeccccChHHHHHHHHHccceeEEe
Confidence 3344456555543221111 122233344556777777766664 567899999999999999999999999999999
Q ss_pred cCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeC
Q psy1089 272 HGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSH 351 (404)
Q Consensus 272 ~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~ 351 (404)
||+..+++|..+++.|+.+. +-+|+.|++++.|||+++..|||+||+|-.-.+|.+|+||++|-|.+. --..||.+
T Consensus 452 HGGKDQedR~~ai~afr~gk--KDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~G--iATTfINK 527 (610)
T KOG0341|consen 452 HGGKDQEDRHYAIEAFRAGK--KDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTG--IATTFINK 527 (610)
T ss_pred ecCcchhHHHHHHHHHhcCC--CceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcc--eeeeeecc
Confidence 99999999999999999985 347888899999999999999999999999999999999999999775 33456777
Q ss_pred CCHHHHHHHH
Q psy1089 352 STYQVHLFTI 361 (404)
Q Consensus 352 ~TiEe~i~~~ 361 (404)
++-|-.++++
T Consensus 528 ~~~esvLlDL 537 (610)
T KOG0341|consen 528 NQEESVLLDL 537 (610)
T ss_pred cchHHHHHHH
Confidence 7766655554
No 42
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.47 E-value=7.5e-13 Score=140.63 Aligned_cols=119 Identities=17% Similarity=0.261 Sum_probs=105.9
Q ss_pred cccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEee
Q psy1089 220 IVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLS 299 (404)
Q Consensus 220 ~~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis 299 (404)
.+....|...|..++.. ....++||||......+.+...|...|+.+..+||.+++.+|..+++.|+++. +. +|++
T Consensus 226 ~v~~~~k~~~L~~~L~~--~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~-~~-ILVA 301 (629)
T PRK11634 226 TVWGMRKNEALVRFLEA--EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGR-LD-ILIA 301 (629)
T ss_pred EechhhHHHHHHHHHHh--cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCC-CC-EEEE
Confidence 34455688888888763 24578999999999999999999999999999999999999999999999985 33 6788
Q ss_pred ccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCc
Q psy1089 300 TRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKP 342 (404)
Q Consensus 300 ~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~ 342 (404)
|+++++|||++.+++||+||+|.++..|.|++||++|.|....
T Consensus 302 Tdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ 344 (629)
T PRK11634 302 TDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGR 344 (629)
T ss_pred cchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcce
Confidence 8999999999999999999999999999999999999997654
No 43
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=99.46 E-value=1.8e-12 Score=125.20 Aligned_cols=181 Identities=21% Similarity=0.210 Sum_probs=112.5
Q ss_pred hhHHHHHHHHHHHhCCCCccccCCcccCCCcccccccccccCCcHHHHHHHHHHHh-----hhCCCeEEEEecchHHHHH
Q psy1089 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKL-----KQTNHKTLVFSTMVKVLNF 256 (404)
Q Consensus 182 ~~l~~~l~~Lr~ic~hP~L~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~ll~~l-----~~~~~KvlIFs~~~~~l~~ 256 (404)
..+...+..|+.+|+||+|+...+.+.... ......++...|||+.+|.+++..+ ...+-+++|.++..+++|+
T Consensus 54 ~~~~~~~~nl~~V~~HP~LlvdH~mPk~ll-~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldl 132 (297)
T PF11496_consen 54 QSMELLIENLRLVANHPSLLVDHYMPKQLL-LSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDL 132 (297)
T ss_dssp HHHHHHHHHHHHHHH-GGGT--TT--S-S--STTHHHHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHH
T ss_pred HHHHHHHHHHHHhccCccccccccCccccc-cchHHHHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHH
Confidence 346667889999999999976665443321 3344566788999999999999998 5667899999999999999
Q ss_pred HHHHHHhcCCceEeccCCcCHHHHHHHH------------HHHhC--CCCceEEEeecccccc----CCCCCCCCEEEEe
Q psy1089 257 IEELCVLENYNYYRLHGSIRNEERNDAV------------QQFNG--STEWGVFLLSTRAGGQ----GLNLTAADTCILY 318 (404)
Q Consensus 257 L~~~L~~~gi~~~~i~G~~~~~~R~~~i------------~~F~~--~~~~~vlLis~~a~g~----GlnL~~a~~VI~~ 318 (404)
|+.+|...++.+.++.|.....+....- ..... ..++.+.|++++-... .++-...+.||-|
T Consensus 133 lE~~llGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsf 212 (297)
T PF11496_consen 133 LEGLLLGKKLNYKRYSGESLYDEKHKVPKNGNTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISF 212 (297)
T ss_dssp HHHHHTTSSSEEEESSS--S--S---S----------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-
T ss_pred HHHHHccCCeeEEecCCCCCcCccccCCcccccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEe
Confidence 9999999999999999976554443332 11111 1256777777664433 1333477899999
Q ss_pred cCCCCchhHH-HHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHhcC
Q psy1089 319 DSDWNPQVDI-QAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDSSG 365 (404)
Q Consensus 319 d~~wnp~~~~-Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~~K 365 (404)
|+.+++.... |.+-..+|.+ +.+.|++||..+|+|-.++..-+..
T Consensus 213 D~~~d~~~p~i~~lR~~~~~~--~~~PiirLv~~nSiEHi~L~~~~~~ 258 (297)
T PF11496_consen 213 DPSFDTSLPSIEQLRTQNRRN--RLCPIIRLVPSNSIEHIELCFPKSS 258 (297)
T ss_dssp SST--TTSHHHHHHH---------S--EEEEEETTSHHHHHHHHTTTS
T ss_pred cCCCCCCChHHHHHHhhcCCC--CCCcEEEEeeCCCHHHHHHHccCcc
Confidence 9999998654 4544444443 7899999999999999988885543
No 44
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.45 E-value=7.9e-13 Score=137.50 Aligned_cols=132 Identities=16% Similarity=0.184 Sum_probs=115.8
Q ss_pred ccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeec
Q psy1089 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLST 300 (404)
Q Consensus 221 ~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~ 300 (404)
.....+...+.+++..+...+.+++||+...+.++.|.+.|...|+++..++|+++.++|..+++.|+++. ..++|++.
T Consensus 324 ~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~-~~vLvaT~ 402 (501)
T PHA02558 324 TSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGK-GIIIVASY 402 (501)
T ss_pred hccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCC-CeEEEEEc
Confidence 34456667777777777777889999999999999999999999999999999999999999999999874 56777777
Q ss_pred cccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCC-cEEEEEEEeCCC
Q psy1089 301 RAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTK-PVCIYRLVSHST 353 (404)
Q Consensus 301 ~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~-~V~Vy~Li~~~T 353 (404)
+..|+|+|++.+++||++.|+-+...+.|++||++|.|..+ .+.||.++..-.
T Consensus 403 ~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~~ 456 (501)
T PHA02558 403 GVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDDLS 456 (501)
T ss_pred ceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeecccc
Confidence 99999999999999999999999999999999999998765 589999986543
No 45
>KOG0298|consensus
Probab=99.45 E-value=7e-14 Score=150.85 Aligned_cols=139 Identities=24% Similarity=0.314 Sum_probs=119.6
Q ss_pred CCcHHHHHHHHHHHh--hhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeec
Q psy1089 223 SSGKMIVLNQLLHKL--KQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLST 300 (404)
Q Consensus 223 ~S~Kl~~L~~ll~~l--~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~ 300 (404)
.++|+.....++..+ .+..+|+|+|++....++.++..+...++.+.+-.++- +-...+..|.. +.||++..
T Consensus 1201 fg~kI~~v~~~il~iK~k~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t~---d~~dc~~~fk~---I~clll~~ 1274 (1394)
T KOG0298|consen 1201 FGTKIDSVVIAILYIKFKNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGETE---DFDDCIICFKS---IDCLLLFV 1274 (1394)
T ss_pred hccCchhHHHHHHHHhccCcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccCCc---chhhhhhhccc---ceEEEEEe
Confidence 367777776666544 34568999999999999999999999998876655433 34566677765 88999999
Q ss_pred cccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHhcCCc
Q psy1089 301 RAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDSSGSV 367 (404)
Q Consensus 301 ~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~~K~~ 367 (404)
..++-|+||..|.||+..+|--||+.+.||+||+||+||++++.||+++..+|+||.|+.....|..
T Consensus 1275 ~~~~~GLNL~eA~Hvfl~ePiLN~~~E~QAigRvhRiGQ~~pT~V~~fiv~~TvEe~Il~l~~~~ee 1341 (1394)
T KOG0298|consen 1275 SKGSKGLNLIEATHVFLVEPILNPGDEAQAIGRVHRIGQKRPTFVHRFIVNETVEENILSLITSKEE 1341 (1394)
T ss_pred ccCcccccHHhhhhhheeccccCchHHHhhhhhhhhcccccchhhhhhhhccchHHHHHHHhhhhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999877653
No 46
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.43 E-value=1.4e-12 Score=138.61 Aligned_cols=115 Identities=16% Similarity=0.181 Sum_probs=100.3
Q ss_pred cHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccc
Q psy1089 225 GKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGG 304 (404)
Q Consensus 225 ~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g 304 (404)
.++..+...+.. ..+.++||||.....++.+...|...|+.+..+||+++.++|..+++.|..+. +. +|++|.+.|
T Consensus 222 ~~~~~l~~~l~~--~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~-~~-VLVaT~a~~ 297 (607)
T PRK11057 222 KPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDD-LQ-IVVATVAFG 297 (607)
T ss_pred chHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCC-CC-EEEEechhh
Confidence 344444444432 35789999999999999999999999999999999999999999999999885 44 667789999
Q ss_pred cCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcE
Q psy1089 305 QGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPV 343 (404)
Q Consensus 305 ~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V 343 (404)
+|||++++++||+||+|.+...|.|++||++|.|....+
T Consensus 298 ~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ 336 (607)
T PRK11057 298 MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEA 336 (607)
T ss_pred ccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceE
Confidence 999999999999999999999999999999999976553
No 47
>KOG0332|consensus
Probab=99.43 E-value=1.4e-12 Score=125.41 Aligned_cols=128 Identities=18% Similarity=0.270 Sum_probs=107.8
Q ss_pred CCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccc
Q psy1089 223 SSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRA 302 (404)
Q Consensus 223 ~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a 302 (404)
...|+.+|.++...+ .-...||||+......+|...|...|..+..+||.+..++|..++++|+.|. .-+|++|.+
T Consensus 314 ~~~K~~~l~~lyg~~--tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~--~kVLitTnV 389 (477)
T KOG0332|consen 314 RDDKYQALVNLYGLL--TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGK--EKVLITTNV 389 (477)
T ss_pred hhhHHHHHHHHHhhh--hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCc--ceEEEEech
Confidence 457999999977643 2347899999999999999999999999999999999999999999999995 236788999
Q ss_pred cccCCCCCCCCEEEEecCCC------CchhHHHHHHhhhccCCCCcEEEEEEEeCCCHH
Q psy1089 303 GGQGLNLTAADTCILYDSDW------NPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355 (404)
Q Consensus 303 ~g~GlnL~~a~~VI~~d~~w------np~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiE 355 (404)
+++|||....+.||+||+|- ++.+|.||+||+||+|.+. +-|-.+-.+++.+
T Consensus 390 ~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG-~a~n~v~~~~s~~ 447 (477)
T KOG0332|consen 390 CARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKG-LAINLVDDKDSMN 447 (477)
T ss_pred hhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccc-eEEEeecccCcHH
Confidence 99999999999999999986 4779999999999999764 3333333445544
No 48
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.41 E-value=1.6e-12 Score=137.98 Aligned_cols=119 Identities=18% Similarity=0.203 Sum_probs=105.0
Q ss_pred cCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecc
Q psy1089 222 SSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTR 301 (404)
Q Consensus 222 ~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~ 301 (404)
....+...+.+.+... .+.++||||......+.+...|...|+++..+||+++.++|..+++.|..+. + .+|++|.
T Consensus 207 ~~~~~~~~l~~~l~~~--~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~-~-~vlVaT~ 282 (591)
T TIGR01389 207 KKNNKQKFLLDYLKKH--RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDD-V-KVMVATN 282 (591)
T ss_pred eCCCHHHHHHHHHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCC-C-cEEEEec
Confidence 3455677777776643 3689999999999999999999999999999999999999999999999985 3 4677889
Q ss_pred ccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEE
Q psy1089 302 AGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVC 344 (404)
Q Consensus 302 a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~ 344 (404)
+.|.|+|++.+++||++++|.+...|.|++||+||.|+...+.
T Consensus 283 a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~i 325 (591)
T TIGR01389 283 AFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAI 325 (591)
T ss_pred hhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEE
Confidence 9999999999999999999999999999999999999766554
No 49
>PTZ00424 helicase 45; Provisional
Probab=99.40 E-value=2.9e-12 Score=129.42 Aligned_cols=124 Identities=17% Similarity=0.333 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecccccc
Q psy1089 226 KMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQ 305 (404)
Q Consensus 226 Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~ 305 (404)
|...+..++... ...++||||+....++.+...|...++.+..+||+++..+|..+++.|+++. +. +|++|+++++
T Consensus 254 ~~~~l~~~~~~~--~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~-~~-vLvaT~~l~~ 329 (401)
T PTZ00424 254 KFDTLCDLYETL--TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGS-TR-VLITTDLLAR 329 (401)
T ss_pred HHHHHHHHHHhc--CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCC-CC-EEEEcccccC
Confidence 555555555432 4578999999999999999999999999999999999999999999999985 44 6778899999
Q ss_pred CCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHH
Q psy1089 306 GLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355 (404)
Q Consensus 306 GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiE 355 (404)
|+|++.+++||++|+|.+...|.|++||++|.|... .++.|++.+..+
T Consensus 330 GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G--~~i~l~~~~~~~ 377 (401)
T PTZ00424 330 GIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKG--VAINFVTPDDIE 377 (401)
T ss_pred CcCcccCCEEEEECCCCCHHHEeecccccccCCCCc--eEEEEEcHHHHH
Confidence 999999999999999999999999999999998653 556677665433
No 50
>KOG0335|consensus
Probab=99.38 E-value=2.1e-12 Score=129.38 Aligned_cols=149 Identities=20% Similarity=0.232 Sum_probs=122.3
Q ss_pred ccccccccccCCcHHHHHHHHHHHhhhC--C-----CeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHH
Q psy1089 213 EMVCDENIVSSSGKMIVLNQLLHKLKQT--N-----HKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQ 285 (404)
Q Consensus 213 ~~~~~~~~~~~S~Kl~~L~~ll~~l~~~--~-----~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~ 285 (404)
...+...++....|...|.+++...... . ++++||++.++.++.+..+|...++++..|||..++.+|.+.++
T Consensus 302 ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~ 381 (482)
T KOG0335|consen 302 NITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALN 381 (482)
T ss_pred cceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHH
Confidence 3334445567788999999999865421 2 59999999999999999999999999999999999999999999
Q ss_pred HHhCCCCceEEEeeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHh
Q psy1089 286 QFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDS 363 (404)
Q Consensus 286 ~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~ 363 (404)
.|+++. +. +|++|.++++|||+....|||+||+|-+-..|.|||||++|.|+....+.+.---...+=+.+.+.+.
T Consensus 382 ~Fr~g~-~p-vlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ 457 (482)
T KOG0335|consen 382 DFRNGK-AP-VLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILT 457 (482)
T ss_pred HhhcCC-cc-eEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHH
Confidence 999996 44 56778999999999999999999999999999999999999999887666554222234444444433
No 51
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.38 E-value=3e-12 Score=139.89 Aligned_cols=105 Identities=17% Similarity=0.098 Sum_probs=96.7
Q ss_pred CCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEecC
Q psy1089 241 NHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDS 320 (404)
Q Consensus 241 ~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~d~ 320 (404)
+++.||||.....++.+...|...|+.+..+||+++.++|..+.+.|..+. +. +|++|.+.|+|||++..++||+|++
T Consensus 680 ~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Ge-i~-VLVATdAFGMGIDkPDVR~VIHydl 757 (1195)
T PLN03137 680 DECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDE-IN-IICATVAFGMGINKPDVRFVIHHSL 757 (1195)
T ss_pred CCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCC-Cc-EEEEechhhcCCCccCCcEEEEcCC
Confidence 568999999999999999999999999999999999999999999999985 44 5677899999999999999999999
Q ss_pred CCCchhHHHHHHhhhccCCCCcEEEEE
Q psy1089 321 DWNPQVDIQAEARCHRIGQTKPVCIYR 347 (404)
Q Consensus 321 ~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~ 347 (404)
|-+...|.|++||+||.|+...+..|+
T Consensus 758 PkSiEsYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 758 PKSIEGYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred CCCHHHHHhhhcccCCCCCCceEEEEe
Confidence 999999999999999999887655543
No 52
>KOG0336|consensus
Probab=99.36 E-value=3.4e-12 Score=123.98 Aligned_cols=127 Identities=18% Similarity=0.314 Sum_probs=110.4
Q ss_pred ccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeec
Q psy1089 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLST 300 (404)
Q Consensus 221 ~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~ 300 (404)
...+.|+..+..++..+ ....|+|||+....+.|.|..-|.-.|+....+||.-.+.+|+.+++.|+.|. ++ +|++|
T Consensus 446 ~~d~~k~~~~~~f~~~m-s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~-vr-ILvaT 522 (629)
T KOG0336|consen 446 TTDSEKLEIVQFFVANM-SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGE-VR-ILVAT 522 (629)
T ss_pred cccHHHHHHHHHHHHhc-CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCc-eE-EEEEe
Confidence 45678888777777655 45789999999999999999999999999999999999999999999999994 44 67788
Q ss_pred cccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCC
Q psy1089 301 RAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHS 352 (404)
Q Consensus 301 ~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~ 352 (404)
+.+++|||++...||++||.|-|-..|.||+||+||.|.+.. -..|++.+
T Consensus 523 DlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~--sis~lt~~ 572 (629)
T KOG0336|consen 523 DLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGT--SISFLTRN 572 (629)
T ss_pred chhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcc--eEEEEehh
Confidence 999999999999999999999999999999999999998753 33444443
No 53
>KOG4284|consensus
Probab=99.36 E-value=3.4e-12 Score=129.83 Aligned_cols=160 Identities=16% Similarity=0.178 Sum_probs=126.8
Q ss_pred HHHHHHHHHHhCCCCccccCCcccCCCcccccccccccCCc---------HHHHHHHHHHHhhhCCCeEEEEecchHHHH
Q psy1089 185 TNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSG---------KMIVLNQLLHKLKQTNHKTLVFSTMVKVLN 255 (404)
Q Consensus 185 ~~~l~~Lr~ic~hP~L~~~~~~~~~~~~~~~~~~~~~~~S~---------Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~ 255 (404)
.++-..|.+++.+|.|+.........- .+.+ ......|. |++.|-++...+ +-...||||....-++
T Consensus 211 ~nLdn~Lsk~mrdp~lVr~n~~d~~L~-GikQ-yv~~~~s~nnsveemrlklq~L~~vf~~i--py~QAlVF~~~~sra~ 286 (980)
T KOG4284|consen 211 RNLDNLLSKFMRDPALVRFNADDVQLF-GIKQ-YVVAKCSPNNSVEEMRLKLQKLTHVFKSI--PYVQALVFCDQISRAE 286 (980)
T ss_pred hhHHHHHHHHhcccceeecccCCceee-chhh-eeeeccCCcchHHHHHHHHHHHHHHHhhC--chHHHHhhhhhhhhhh
Confidence 445567888999999887654332211 1111 11122344 788888877765 3468999999999999
Q ss_pred HHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhh
Q psy1089 256 FIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCH 335 (404)
Q Consensus 256 ~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~ 335 (404)
.++.+|...|+++..|.|.+++.+|..+++.+++- ...+|++++..++|||-..+|.||++|+|-+..+|.|||||++
T Consensus 287 ~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f--~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAg 364 (980)
T KOG4284|consen 287 PIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAF--RVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAG 364 (980)
T ss_pred HHHHHhhccCCCeEEeccccchhHHHHHHHHhhhc--eEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcc
Confidence 99999999999999999999999999999999987 3457889999999999999999999999999999999999999
Q ss_pred ccCCCCcEEEEEEEeC
Q psy1089 336 RIGQTKPVCIYRLVSH 351 (404)
Q Consensus 336 R~Gq~~~V~Vy~Li~~ 351 (404)
|+|... ..|..+..+
T Consensus 365 RFG~~G-~aVT~~~~~ 379 (980)
T KOG4284|consen 365 RFGAHG-AAVTLLEDE 379 (980)
T ss_pred cccccc-eeEEEeccc
Confidence 999764 445444443
No 54
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.36 E-value=1.9e-11 Score=128.59 Aligned_cols=134 Identities=16% Similarity=0.199 Sum_probs=108.6
Q ss_pred ccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeec
Q psy1089 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLST 300 (404)
Q Consensus 221 ~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~ 300 (404)
.....|+..|.+++..+...+..+||||......+.+...|...|+++..+||..+ +|+..+..|...+. -++++|
T Consensus 453 ~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g--~VlVAT 528 (656)
T PRK12898 453 LTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRG--RITVAT 528 (656)
T ss_pred eCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCC--cEEEEc
Confidence 34567999999999887767788999999999999999999999999999999865 55566666665432 278899
Q ss_pred cccccCCCCC---CCC-----EEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHh
Q psy1089 301 RAGGQGLNLT---AAD-----TCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDS 363 (404)
Q Consensus 301 ~a~g~GlnL~---~a~-----~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~ 363 (404)
+.+|+|+|+. .+. +||++|.|-+...|.|++||++|.|....+ +.++ |.|+.++.+..
T Consensus 529 dmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s--~~~i---s~eD~l~~~~~ 594 (656)
T PRK12898 529 NMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSY--EAIL---SLEDDLLQSFL 594 (656)
T ss_pred cchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEE--EEEe---chhHHHHHhhh
Confidence 9999999998 443 999999999999999999999999977543 3333 35677776544
No 55
>KOG0342|consensus
Probab=99.36 E-value=3.8e-12 Score=126.27 Aligned_cols=128 Identities=21% Similarity=0.325 Sum_probs=110.3
Q ss_pred ccccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEe
Q psy1089 219 NIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLL 298 (404)
Q Consensus 219 ~~~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLi 298 (404)
.+.....++..+..+|.+.... .|++|||....+..+....|.+..+++..|||..++..|.....+|.+.. .-+|+
T Consensus 309 vv~~~~~~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kae--sgIL~ 385 (543)
T KOG0342|consen 309 VVAPSDSRFSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAE--SGILV 385 (543)
T ss_pred EeccccchHHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcc--cceEE
Confidence 3444556678888888876543 89999999999999999999999999999999999999999999999985 34888
Q ss_pred eccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeC
Q psy1089 299 STRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSH 351 (404)
Q Consensus 299 s~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~ 351 (404)
+|+++++|+|++..+.||.||+|-+|..|+||+||++|-|-+. .-+-++++
T Consensus 386 cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G--~alL~l~p 436 (543)
T KOG0342|consen 386 CTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEG--KALLLLAP 436 (543)
T ss_pred ecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCc--eEEEEeCh
Confidence 9999999999999999999999999999999999999977554 33444443
No 56
>KOG0340|consensus
Probab=99.34 E-value=1e-11 Score=118.92 Aligned_cols=124 Identities=19% Similarity=0.262 Sum_probs=111.8
Q ss_pred ccccccCCcHHHHHHHHHHHhhh-CCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceE
Q psy1089 217 DENIVSSSGKMIVLNQLLHKLKQ-TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGV 295 (404)
Q Consensus 217 ~~~~~~~S~Kl~~L~~ll~~l~~-~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v 295 (404)
.+.++...+|-..|..+|+...+ +...++||++.+...+.|...|+..++.+..+||.+++.+|..++.+|+.+. .+
T Consensus 229 ~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~-~~- 306 (442)
T KOG0340|consen 229 GYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNA-AR- 306 (442)
T ss_pred heeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcC-cc-
Confidence 33445567888999999998766 5678999999999999999999999999999999999999999999999984 33
Q ss_pred EEeeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCc
Q psy1089 296 FLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKP 342 (404)
Q Consensus 296 lLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~ 342 (404)
+|++|+++++|||++..+.||++|.|-+|.+|+||.||..|.|....
T Consensus 307 iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~ 353 (442)
T KOG0340|consen 307 ILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGM 353 (442)
T ss_pred EEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcc
Confidence 67788999999999999999999999999999999999999998753
No 57
>KOG0345|consensus
Probab=99.33 E-value=9.7e-12 Score=122.76 Aligned_cols=152 Identities=16% Similarity=0.321 Sum_probs=121.7
Q ss_pred HHHHhCCCCccccCCcccC-CCcccccccccccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHh--cCCc
Q psy1089 191 LRNIISHPYLINKPYRIVD-GKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVL--ENYN 267 (404)
Q Consensus 191 Lr~ic~hP~L~~~~~~~~~-~~~~~~~~~~~~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~--~gi~ 267 (404)
.+....+|..+........ ........+..+...-|+..|.++|.. ...+|+|||.......++....|.. .+++
T Consensus 206 ~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~ 283 (567)
T KOG0345|consen 206 ARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKRE 283 (567)
T ss_pred HHhhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCc
Confidence 3455667776554332210 112234455567778899999999985 3568999999999999999888863 5788
Q ss_pred eEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEE
Q psy1089 268 YYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIY 346 (404)
Q Consensus 268 ~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy 346 (404)
++.+||.++...|.+++..|.+.. .-+|++|+++++|||+++.+.||.||||-+|..+.||.||++|.|.....-|+
T Consensus 284 i~~iHGK~~q~~R~k~~~~F~~~~--~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivf 360 (567)
T KOG0345|consen 284 IFSIHGKMSQKARAKVLEAFRKLS--NGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVF 360 (567)
T ss_pred EEEecchhcchhHHHHHHHHHhcc--CceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEE
Confidence 999999999999999999999853 33788899999999999999999999999999999999999999988765544
No 58
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.31 E-value=1.5e-11 Score=133.10 Aligned_cols=125 Identities=14% Similarity=0.128 Sum_probs=104.3
Q ss_pred HHHHHhhhCCCeEEEEecchHHHHHHHHHHHhc--------CCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecccc
Q psy1089 232 QLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLE--------NYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAG 303 (404)
Q Consensus 232 ~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~--------gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~ 303 (404)
+++..+...+.++||||+.....+.+...|+.. +..+..+||++++++|.++.++|+++. +. +|++|+++
T Consensus 262 ~~l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~-i~-vLVaTd~l 339 (742)
T TIGR03817 262 DLLADLVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGE-LL-GVATTNAL 339 (742)
T ss_pred HHHHHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCC-ce-EEEECchH
Confidence 344444456789999999999999999887653 567788999999999999999999985 33 67889999
Q ss_pred ccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHH
Q psy1089 304 GQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFT 360 (404)
Q Consensus 304 g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~ 360 (404)
++|||+...++||+++.|-+...|.||+||+||.|+.. .++-++..+..|..++.
T Consensus 340 erGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g--~ai~v~~~~~~d~~~~~ 394 (742)
T TIGR03817 340 ELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGA--LVVLVARDDPLDTYLVH 394 (742)
T ss_pred hccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCc--EEEEEeCCChHHHHHHh
Confidence 99999999999999999999999999999999999764 34555555667766554
No 59
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.31 E-value=2e-11 Score=131.01 Aligned_cols=133 Identities=14% Similarity=0.109 Sum_probs=112.3
Q ss_pred ccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeec
Q psy1089 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLST 300 (404)
Q Consensus 221 ~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~ 300 (404)
.....|+.++.+.+......+.++||||.+....+.+...|...|+++..+||.....++..+...++.+ -++++|
T Consensus 408 ~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g----~VlIAT 483 (790)
T PRK09200 408 VTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG----AVTVAT 483 (790)
T ss_pred cCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC----eEEEEc
Confidence 4456799999999987767899999999999999999999999999999999999888887777776654 278899
Q ss_pred cccccCCCC---CCCC-----EEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHH
Q psy1089 301 RAGGQGLNL---TAAD-----TCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTID 362 (404)
Q Consensus 301 ~a~g~GlnL---~~a~-----~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~ 362 (404)
+.+|+|+|+ +.+. +||++|+|-++..|.|+.||++|.|....+. .++ |.|+.++.+-
T Consensus 484 dmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~--~~i---s~eD~l~~~~ 548 (790)
T PRK09200 484 NMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQ--FFI---SLEDDLLKRF 548 (790)
T ss_pred cchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEE--EEE---cchHHHHHhh
Confidence 999999999 4777 9999999999999999999999999886443 223 4466666553
No 60
>KOG0348|consensus
Probab=99.30 E-value=5.8e-11 Score=118.90 Aligned_cols=119 Identities=27% Similarity=0.427 Sum_probs=95.9
Q ss_pred CcHHH--HHHHHHHHhhh--CCCeEEEEecchHHHHHHHHHHHhc----------------------CCceEeccCCcCH
Q psy1089 224 SGKMI--VLNQLLHKLKQ--TNHKTLVFSTMVKVLNFIEELCVLE----------------------NYNYYRLHGSIRN 277 (404)
Q Consensus 224 S~Kl~--~L~~ll~~l~~--~~~KvlIFs~~~~~l~~L~~~L~~~----------------------gi~~~~i~G~~~~ 277 (404)
.+|++ .|..+|....+ ...|+|||....+.++.=...|... +..+.++||++++
T Consensus 404 PpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~Q 483 (708)
T KOG0348|consen 404 PPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQ 483 (708)
T ss_pred CCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhH
Confidence 44544 45666665533 4568899988888777555554321 3468999999999
Q ss_pred HHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEE
Q psy1089 278 EERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVC 344 (404)
Q Consensus 278 ~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~ 344 (404)
++|..++..|.... ..+|++|+++++||||+....||-||+|..+.+|.+|+||+.|+|-+...-
T Consensus 484 eeRts~f~~Fs~~~--~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~al 548 (708)
T KOG0348|consen 484 EERTSVFQEFSHSR--RAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEAL 548 (708)
T ss_pred HHHHHHHHhhcccc--ceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceE
Confidence 99999999999875 348889999999999999999999999999999999999999999876543
No 61
>KOG0343|consensus
Probab=99.28 E-value=5.3e-11 Score=119.52 Aligned_cols=168 Identities=17% Similarity=0.224 Sum_probs=135.4
Q ss_pred HHHhCCCCccccC-CcccCCCcccccccccccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHH--hcCCce
Q psy1089 192 RNIISHPYLINKP-YRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCV--LENYNY 268 (404)
Q Consensus 192 r~ic~hP~L~~~~-~~~~~~~~~~~~~~~~~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~--~~gi~~ 268 (404)
|-+..+|..+... ......+....+.+..+.-..|+.+|...|..+. ..|.|||..+...+.++.+.+. ..|++.
T Consensus 265 RLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shl--k~K~iVF~SscKqvkf~~e~F~rlrpg~~l 342 (758)
T KOG0343|consen 265 RLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHL--KKKSIVFLSSCKQVKFLYEAFCRLRPGIPL 342 (758)
T ss_pred HhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHHHHHhcc--ccceEEEEehhhHHHHHHHHHHhcCCCCce
Confidence 4455678666544 2222333344445556667789999999998764 4689999999999999988886 569999
Q ss_pred EeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEE
Q psy1089 269 YRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRL 348 (404)
Q Consensus 269 ~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~L 348 (404)
..+||.+++..|..+.++|... ..++|++|+++++|||++..+.||.+|.|-+-.+|+||.||+.|.+...+..+|-
T Consensus 343 ~~L~G~~~Q~~R~ev~~~F~~~--~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L- 419 (758)
T KOG0343|consen 343 LALHGTMSQKKRIEVYKKFVRK--RAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLML- 419 (758)
T ss_pred eeeccchhHHHHHHHHHHHHHh--cceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEE-
Confidence 9999999999999999999986 4678999999999999999999999999999999999999999999877655432
Q ss_pred EeCCCHHHHHHHHHhcCC
Q psy1089 349 VSHSTYQVHLFTIDSSGS 366 (404)
Q Consensus 349 i~~~TiEe~i~~~~~~K~ 366 (404)
.-+-||.++.+++.|.
T Consensus 420 --~psEeE~~l~~Lq~k~ 435 (758)
T KOG0343|consen 420 --TPSEEEAMLKKLQKKK 435 (758)
T ss_pred --cchhHHHHHHHHHHcC
Confidence 2345689999888774
No 62
>KOG0346|consensus
Probab=99.27 E-value=3.7e-11 Score=117.81 Aligned_cols=162 Identities=14% Similarity=0.188 Sum_probs=125.1
Q ss_pred HHHHHHHHH-HhCCCCccccCCcccCCCcccccccccccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHh
Q psy1089 185 TNVTMVLRN-IISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVL 263 (404)
Q Consensus 185 ~~~l~~Lr~-ic~hP~L~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~ 263 (404)
-.-+..|++ +|.+|..+.-........+...++...+..-.|+..+.-+++- .--..|.|||.+..+..-.|.-+|+.
T Consensus 212 ~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflllyallKL-~LI~gKsliFVNtIdr~YrLkLfLeq 290 (569)
T KOG0346|consen 212 SDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKL-RLIRGKSLIFVNTIDRCYRLKLFLEQ 290 (569)
T ss_pred hhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHHHHHHHH-HHhcCceEEEEechhhhHHHHHHHHH
Confidence 333556654 5667887655444333334444555556677899888877763 22346999999999999999999999
Q ss_pred cCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecc-----------------------------------ccccCCC
Q psy1089 264 ENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTR-----------------------------------AGGQGLN 308 (404)
Q Consensus 264 ~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~-----------------------------------a~g~Gln 308 (404)
.|++.+.++|.+|...|.-++++||.| ..-++|+++ ..++|||
T Consensus 291 FGiksciLNseLP~NSR~Hii~QFNkG--~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGID 368 (569)
T KOG0346|consen 291 FGIKSCILNSELPANSRCHIIEQFNKG--LYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGID 368 (569)
T ss_pred hCcHhhhhcccccccchhhHHHHhhCc--ceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhcccc
Confidence 999999999999999999999999998 444555555 1358999
Q ss_pred CCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeC
Q psy1089 309 LTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSH 351 (404)
Q Consensus 309 L~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~ 351 (404)
+...++||+||+|-++..|+||+||+.|.|.+.. +..||.+
T Consensus 369 F~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~Gt--alSfv~P 409 (569)
T KOG0346|consen 369 FHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGT--ALSFVSP 409 (569)
T ss_pred chheeeeeecCCCCchHHHHHhccccccCCCCCc--eEEEecc
Confidence 9999999999999999999999999999987764 4455544
No 63
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.24 E-value=1.3e-10 Score=123.23 Aligned_cols=152 Identities=16% Similarity=0.165 Sum_probs=119.6
Q ss_pred HHHHHHHhCCCCccccCCcccCCCccccccccc-ccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCC
Q psy1089 188 TMVLRNIISHPYLINKPYRIVDGKKEMVCDENI-VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENY 266 (404)
Q Consensus 188 l~~Lr~ic~hP~L~~~~~~~~~~~~~~~~~~~~-~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi 266 (404)
...++++-+-+...-+...+.- ....+..+ .....|+.++.+.+......|..+||||.+....+.+...|...|+
T Consensus 354 ~~E~~~iY~l~vv~IPtnkp~~---R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi 430 (745)
T TIGR00963 354 EEEFEKIYNLEVVVVPTNRPVI---RKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGI 430 (745)
T ss_pred HHHHHHHhCCCEEEeCCCCCee---eeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCC
Confidence 3456666666655544322211 11111122 2345799888888888888999999999999999999999999999
Q ss_pred ceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCC-------CCEEEEecCCCCchhHHHHHHhhhccCC
Q psy1089 267 NYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTA-------ADTCILYDSDWNPQVDIQAEARCHRIGQ 339 (404)
Q Consensus 267 ~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~-------a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq 339 (404)
++..++|. ..+|+..+-.|..++ ..++++|+.+|+|+|+.. .-|||.+++|-++..+.|+.||++|.|.
T Consensus 431 ~~~~Lna~--q~~rEa~ii~~ag~~--g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~ 506 (745)
T TIGR00963 431 PHNVLNAK--NHEREAEIIAQAGRK--GAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGD 506 (745)
T ss_pred CeEEeeCC--hHHHHHHHHHhcCCC--ceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCC
Confidence 99999998 778999999998874 347888899999999977 7799999999999999999999999998
Q ss_pred CCcEEEE
Q psy1089 340 TKPVCIY 346 (404)
Q Consensus 340 ~~~V~Vy 346 (404)
......|
T Consensus 507 ~G~s~~~ 513 (745)
T TIGR00963 507 PGSSRFF 513 (745)
T ss_pred CcceEEE
Confidence 8654433
No 64
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.23 E-value=1.2e-10 Score=116.06 Aligned_cols=132 Identities=18% Similarity=0.237 Sum_probs=102.4
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCC--ceEeccCCcCHHHHHHH----HHHHhCCCCceEEE
Q psy1089 224 SGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENY--NYYRLHGSIRNEERNDA----VQQFNGSTEWGVFL 297 (404)
Q Consensus 224 S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi--~~~~i~G~~~~~~R~~~----i~~F~~~~~~~vlL 297 (404)
..|...+..++..+ ..+.++||||+....++.+...|+..+. .+..+||+++..+|.+. ++.|.++. ..+|
T Consensus 206 ~~~~~~l~~l~~~~-~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~--~~il 282 (358)
T TIGR01587 206 VGEISSLERLLEFI-KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNE--KFVI 282 (358)
T ss_pred ccCHHHHHHHHHHh-hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCC--CeEE
Confidence 35677777777543 4578999999999999999999987776 48899999999999764 88999874 3478
Q ss_pred eeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCC----cEEEEEEEeCC---CHHHHHHHH
Q psy1089 298 LSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTK----PVCIYRLVSHS---TYQVHLFTI 361 (404)
Q Consensus 298 is~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~----~V~Vy~Li~~~---TiEe~i~~~ 361 (404)
++|+++++|+|+. ++.||.++.| +..+.|++||++|.|... .|.||.....+ ..+..++++
T Consensus 283 vaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 350 (358)
T TIGR01587 283 VATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEGKLFPYPYELVER 350 (358)
T ss_pred EECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCCCeecCCHHHHHH
Confidence 8889999999995 7888888765 788999999999999764 35555544433 344444444
No 65
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.22 E-value=1.1e-10 Score=124.42 Aligned_cols=131 Identities=15% Similarity=0.127 Sum_probs=109.4
Q ss_pred ccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeec
Q psy1089 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLST 300 (404)
Q Consensus 221 ~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~ 300 (404)
.....|+.++.+.+.+....+.++||||.+....+.+...|...|+++..++|.....++..+...|+.+ -++++|
T Consensus 404 ~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g----~VlIAT 479 (762)
T TIGR03714 404 ATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG----AVTVAT 479 (762)
T ss_pred ECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC----eEEEEc
Confidence 4456799999999988878899999999999999999999999999999999999988887776666655 278999
Q ss_pred cccccCCCCC---------CCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHH
Q psy1089 301 RAGGQGLNLT---------AADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTI 361 (404)
Q Consensus 301 ~a~g~GlnL~---------~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~ 361 (404)
+.+|+|+|+. +.++|+.+++|-+... .|+.||++|.|....+. .+++ .|+.++.+
T Consensus 480 dmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~--~~is---~eD~l~~~ 543 (762)
T TIGR03714 480 SMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQ--FFVS---LEDDLIKR 543 (762)
T ss_pred cccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEE--EEEc---cchhhhhh
Confidence 9999999999 8899999999977655 99999999999876533 3332 35555544
No 66
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.22 E-value=4.2e-10 Score=115.25 Aligned_cols=136 Identities=21% Similarity=0.232 Sum_probs=119.2
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecccc
Q psy1089 224 SGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAG 303 (404)
Q Consensus 224 S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~ 303 (404)
..|+..+..++.... .+.+++||+........+...|...|+ +..++|.++..+|..+++.|+.+. ..+|++.+++
T Consensus 267 ~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~--~~~lv~~~vl 342 (442)
T COG1061 267 ERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGG--IKVLVTVKVL 342 (442)
T ss_pred HHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCC--CCEEEEeeec
Confidence 467778888887665 788999999999999999999988888 889999999999999999999986 4467788999
Q ss_pred ccCCCCCCCCEEEEecCCCCchhHHHHHHhhhcc-CCCCc--EEEEEEEeCCCHHHHHHHHHh
Q psy1089 304 GQGLNLTAADTCILYDSDWNPQVDIQAEARCHRI-GQTKP--VCIYRLVSHSTYQVHLFTIDS 363 (404)
Q Consensus 304 g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~-Gq~~~--V~Vy~Li~~~TiEe~i~~~~~ 363 (404)
.+|+|++.++.+|+..+.-++..+.|+.||+.|. ..++. +..|-++..++.++.+.....
T Consensus 343 ~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (442)
T COG1061 343 DEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRR 405 (442)
T ss_pred cceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchhhhhh
Confidence 9999999999999999999999999999999994 44444 777888888998888777754
No 67
>KOG0327|consensus
Probab=99.21 E-value=5.4e-11 Score=115.16 Aligned_cols=160 Identities=14% Similarity=0.213 Sum_probs=123.1
Q ss_pred HHHHhCCCCccccCCcccCCCcccccccccccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEe
Q psy1089 191 LRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYR 270 (404)
Q Consensus 191 Lr~ic~hP~L~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~ 270 (404)
=+.+...|..+....+....+. ..+.........|+..|.++.+ +-...+|||+..+-++.+...|..+|+....
T Consensus 218 t~~f~~~pv~i~vkk~~ltl~g-ikq~~i~v~k~~k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~ 292 (397)
T KOG0327|consen 218 TKKFMREPVRILVKKDELTLEG-IKQFYINVEKEEKLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSA 292 (397)
T ss_pred HHHhccCceEEEecchhhhhhh-eeeeeeeccccccccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEE
Confidence 3456667765544333222221 1111222233449999999988 3467899999999999999999999999999
Q ss_pred ccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEe
Q psy1089 271 LHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVS 350 (404)
Q Consensus 271 i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~ 350 (404)
+||.+.+.+|..++..|+.+. ..+|++++..++|++++.++-||+||.|-+...|.+|+||++|+|.+. .+..+++
T Consensus 293 ~~~d~~q~~R~~~~~ef~~gs--srvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg--~~in~v~ 368 (397)
T KOG0327|consen 293 IHGDMEQNERDTLMREFRSGS--SRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKG--VAINFVT 368 (397)
T ss_pred eecccchhhhhHHHHHhhcCC--ceEEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCc--eeeeeeh
Confidence 999999999999999999995 336788899999999999999999999999999999999999999764 4455665
Q ss_pred CCCHHHHHHHH
Q psy1089 351 HSTYQVHLFTI 361 (404)
Q Consensus 351 ~~TiEe~i~~~ 361 (404)
.. |++++..
T Consensus 369 ~~--d~~~lk~ 377 (397)
T KOG0327|consen 369 EE--DVRDLKD 377 (397)
T ss_pred Hh--hHHHHHh
Confidence 54 3444444
No 68
>KOG0344|consensus
Probab=99.20 E-value=1.1e-10 Score=118.20 Aligned_cols=120 Identities=21% Similarity=0.316 Sum_probs=106.6
Q ss_pred CCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHH-HhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecc
Q psy1089 223 SSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELC-VLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTR 301 (404)
Q Consensus 223 ~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L-~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~ 301 (404)
.-+|+.++.+++... -...+|||.++.+....|...| ...++++..|||..++.+|...+++|+.|. + -+|++|+
T Consensus 371 e~~K~lA~rq~v~~g--~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~-I-wvLicTd 446 (593)
T KOG0344|consen 371 EKGKLLALRQLVASG--FKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGK-I-WVLICTD 446 (593)
T ss_pred chhHHHHHHHHHhcc--CCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccC-e-eEEEehh
Confidence 457888888888865 3468999999999999999999 789999999999999999999999999994 3 4677889
Q ss_pred ccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCc-EEEE
Q psy1089 302 AGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKP-VCIY 346 (404)
Q Consensus 302 a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~-V~Vy 346 (404)
..++|+|+.+++.||+||.|-.-..|++++||+||.|+... ++.|
T Consensus 447 ll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfy 492 (593)
T KOG0344|consen 447 LLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFY 492 (593)
T ss_pred hhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEe
Confidence 99999999999999999999999999999999999998753 4444
No 69
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.17 E-value=3.3e-10 Score=121.17 Aligned_cols=121 Identities=13% Similarity=0.140 Sum_probs=106.0
Q ss_pred cCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecc
Q psy1089 222 SSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTR 301 (404)
Q Consensus 222 ~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~ 301 (404)
....|+.++.+.+......+..+||||.+....+.|...|...|+++..++|.....++..+...++.+. ++++|.
T Consensus 421 t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~----VtIATn 496 (796)
T PRK12906 421 TLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA----VTIATN 496 (796)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce----EEEEec
Confidence 3456999999999888788999999999999999999999999999999999988777777776666653 788899
Q ss_pred ccccCCCCC---CCC-----EEEEecCCCCchhHHHHHHhhhccCCCCcEEEE
Q psy1089 302 AGGQGLNLT---AAD-----TCILYDSDWNPQVDIQAEARCHRIGQTKPVCIY 346 (404)
Q Consensus 302 a~g~GlnL~---~a~-----~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy 346 (404)
.+|+|+|+. ++. |||.++.|-+...+.|+.||++|.|.......|
T Consensus 497 mAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~ 549 (796)
T PRK12906 497 MAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFY 549 (796)
T ss_pred cccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEE
Confidence 999999994 667 999999999999999999999999988765433
No 70
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.16 E-value=3.2e-10 Score=120.80 Aligned_cols=126 Identities=17% Similarity=0.130 Sum_probs=108.7
Q ss_pred CCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccc
Q psy1089 223 SSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRA 302 (404)
Q Consensus 223 ~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a 302 (404)
..+++..|.+-+......|.++||||......+.|...|...|+++..+||.++..+|.+++..|+.+. + .+++++..
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~-i-~VLV~t~~ 501 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGE-F-DVLVGINL 501 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCC-c-eEEEEcCh
Confidence 356788888888877788999999999999999999999999999999999999999999999999884 3 35677899
Q ss_pred cccCCCCCCCCEEEEec-----CCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCC
Q psy1089 303 GGQGLNLTAADTCILYD-----SDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHST 353 (404)
Q Consensus 303 ~g~GlnL~~a~~VI~~d-----~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~T 353 (404)
.++|++++.++.||++| .+-+...+.|++||++|.+ . -.++.++...|
T Consensus 502 L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~-~--G~vi~~~~~~~ 554 (655)
T TIGR00631 502 LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-N--GKVIMYADKIT 554 (655)
T ss_pred hcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC-C--CEEEEEEcCCC
Confidence 99999999999999999 5778889999999999973 2 24555655544
No 71
>KOG0334|consensus
Probab=99.16 E-value=4e-10 Score=120.86 Aligned_cols=124 Identities=19% Similarity=0.283 Sum_probs=113.6
Q ss_pred CCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccc
Q psy1089 223 SSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRA 302 (404)
Q Consensus 223 ~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a 302 (404)
...|+..|.++|.+..+ ..++|||++...-++.|.+.|...|+++..+||+.++.+|...+..|+++. ..||+.|..
T Consensus 596 e~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~--~~LLvaTsv 672 (997)
T KOG0334|consen 596 ENEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGV--VNLLVATSV 672 (997)
T ss_pred chHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccC--ceEEEehhh
Confidence 67899999999998765 679999999999999999999999999999999999999999999999984 457888899
Q ss_pred cccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeC
Q psy1089 303 GGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSH 351 (404)
Q Consensus 303 ~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~ 351 (404)
+++||+......||+||.|--...|.+|.||++|.|.+. .-|.|+..
T Consensus 673 varGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 673 VARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred hhcccccccceEEEEcccchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 999999999999999999999999999999999999887 55666666
No 72
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.16 E-value=3.3e-10 Score=124.95 Aligned_cols=118 Identities=17% Similarity=0.123 Sum_probs=98.8
Q ss_pred HHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHh------cCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecc
Q psy1089 228 IVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVL------ENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTR 301 (404)
Q Consensus 228 ~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~------~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~ 301 (404)
..+...+..+...+.++||||+.....+.+...|.. .+..+..+||+++.++|..+.+.|+++. ++ +|++|.
T Consensus 271 ~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~-i~-vLVaTs 348 (876)
T PRK13767 271 EALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGE-LK-VVVSST 348 (876)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCC-Ce-EEEECC
Confidence 344455555556688999999999999999988875 2467888999999999999999999995 44 677889
Q ss_pred ccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccC-CCCcEEEEE
Q psy1089 302 AGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIG-QTKPVCIYR 347 (404)
Q Consensus 302 a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~G-q~~~V~Vy~ 347 (404)
+.++|||+...++||++++|.+...+.||+||+||.+ ......++-
T Consensus 349 ~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 349 SLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred hHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 9999999999999999999999999999999999874 444555554
No 73
>KOG0350|consensus
Probab=99.15 E-value=2e-10 Score=114.29 Aligned_cols=136 Identities=19% Similarity=0.336 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHH----hcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecc
Q psy1089 226 KMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCV----LENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTR 301 (404)
Q Consensus 226 Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~----~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~ 301 (404)
|...+..+|.. ....++|+|++.......+...|+ ..+..+..++|+.+...|.+.+.+|+.++ +. +|++++
T Consensus 416 kpl~~~~lI~~--~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~-i~-vLIcSD 491 (620)
T KOG0350|consen 416 KPLAVYALITS--NKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGD-IN-VLICSD 491 (620)
T ss_pred chHhHHHHHHH--hhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCC-ce-EEEehh
Confidence 44455555553 367899999999998888877776 45667778999999999999999999995 55 456679
Q ss_pred ccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHhcCCccc
Q psy1089 302 AGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDSSGSVSW 369 (404)
Q Consensus 302 a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~~K~~~~ 369 (404)
+.++|+|+.+.+.||+||+|-....|.||.||+.|.||.. ++|.++... |++.|...-+|--.|
T Consensus 492 ~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G--~a~tll~~~--~~r~F~klL~~~~~~ 555 (620)
T KOG0350|consen 492 ALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDG--YAITLLDKH--EKRLFSKLLKKTNLW 555 (620)
T ss_pred hhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCc--eEEEeeccc--cchHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999986 566666554 566676666554333
No 74
>KOG0339|consensus
Probab=99.13 E-value=3.3e-10 Score=112.94 Aligned_cols=166 Identities=22% Similarity=0.312 Sum_probs=128.1
Q ss_pred HHHHHHHH-HHHhCCCCccccCCcccCCCcccccccccc-cCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHH
Q psy1089 184 MTNVTMVL-RNIISHPYLINKPYRIVDGKKEMVCDENIV-SSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELC 261 (404)
Q Consensus 184 l~~~l~~L-r~ic~hP~L~~~~~~~~~~~~~~~~~~~~~-~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L 261 (404)
+-..+..| |.+..+|.-+-.. ........+.+...++ ....|+..|.+-|...... .+||||..-....+.|+..|
T Consensus 411 f~~kIe~lard~L~dpVrvVqg-~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~-gkvlifVTKk~~~e~i~a~L 488 (731)
T KOG0339|consen 411 FKKKIEKLARDILSDPVRVVQG-EVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSE-GKVLIFVTKKADAEEIAANL 488 (731)
T ss_pred chHHHHHHHHHHhcCCeeEEEe-ehhccccchhheeeeccCcHHHHHHHHHHhhhhccC-CcEEEEEeccCCHHHHHHHh
Confidence 34445554 6788888654332 1111111222222222 2346888877777665443 48999999999999999999
Q ss_pred HhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCC
Q psy1089 262 VLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTK 341 (404)
Q Consensus 262 ~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~ 341 (404)
+..|+++..+||++.+.+|.+.+..|+... +. +|+.++++++|+++....+||+||..-+-..+.|++||.+|.|-+
T Consensus 489 klk~~~v~llhgdkdqa~rn~~ls~fKkk~-~~-VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~k- 565 (731)
T KOG0339|consen 489 KLKGFNVSLLHGDKDQAERNEVLSKFKKKR-KP-VLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEK- 565 (731)
T ss_pred ccccceeeeecCchhhHHHHHHHHHHhhcC-Cc-eEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhccccccc-
Confidence 999999999999999999999999999984 34 566779999999999999999999999999999999999999977
Q ss_pred cEEEEEEEeCCCHH
Q psy1089 342 PVCIYRLVSHSTYQ 355 (404)
Q Consensus 342 ~V~Vy~Li~~~TiE 355 (404)
-..|.|||+...+
T Consensus 566 -GvayTlvTeKDa~ 578 (731)
T KOG0339|consen 566 -GVAYTLVTEKDAE 578 (731)
T ss_pred -ceeeEEechhhHH
Confidence 4678999886655
No 75
>KOG0338|consensus
Probab=99.12 E-value=4e-10 Score=112.42 Aligned_cols=127 Identities=23% Similarity=0.320 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecccccc
Q psy1089 226 KMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQ 305 (404)
Q Consensus 226 Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~ 305 (404)
+-.+|..++.... ..+++||.+.......+.-.|-..|+.+..+||++++++|...++.|++.. +. +|++|+++++
T Consensus 413 Rea~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~e-id-vLiaTDvAsR 488 (691)
T KOG0338|consen 413 REAMLASLITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEE-ID-VLIATDVASR 488 (691)
T ss_pred cHHHHHHHHHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhcc-CC-EEEEechhhc
Confidence 4445555555443 578999999999999999999999999999999999999999999999985 44 5778899999
Q ss_pred CCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHH
Q psy1089 306 GLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFT 360 (404)
Q Consensus 306 GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~ 360 (404)
|||+.+...||+|++|-....|.||+||+.|.|... +-..|+..+ |..|+.
T Consensus 489 GLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaG--rsVtlvgE~--dRkllK 539 (691)
T KOG0338|consen 489 GLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAG--RSVTLVGES--DRKLLK 539 (691)
T ss_pred cCCccceeEEEeccCchhHHHHHHHhhhhhhcccCc--ceEEEeccc--cHHHHH
Confidence 999999999999999999999999999999999764 444566665 444443
No 76
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.12 E-value=7.1e-10 Score=118.66 Aligned_cols=124 Identities=15% Similarity=0.123 Sum_probs=107.3
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecccc
Q psy1089 224 SGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAG 303 (404)
Q Consensus 224 S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~ 303 (404)
.+++..|.+.|......|.++||||.....++.|...|...|+++..+||.++..+|..++..|..+. + .+++++...
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~-i-~vlV~t~~L 506 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGE-F-DVLVGINLL 506 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCC-c-eEEEEeCHH
Confidence 46777888888887888999999999999999999999999999999999999999999999999884 3 356788999
Q ss_pred ccCCCCCCCCEEEEecC-----CCCchhHHHHHHhhhccCCCCcEEEEEEEeCC
Q psy1089 304 GQGLNLTAADTCILYDS-----DWNPQVDIQAEARCHRIGQTKPVCIYRLVSHS 352 (404)
Q Consensus 304 g~GlnL~~a~~VI~~d~-----~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~ 352 (404)
++|++++.++.||++|. +-++..|.|++||++|. . .-.++.|+...
T Consensus 507 ~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~--~G~~i~~~~~~ 557 (652)
T PRK05298 507 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-V--NGKVILYADKI 557 (652)
T ss_pred hCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-C--CCEEEEEecCC
Confidence 99999999999999996 56888999999999995 3 33466666643
No 77
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.09 E-value=9.6e-10 Score=113.98 Aligned_cols=112 Identities=21% Similarity=0.199 Sum_probs=98.9
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEe
Q psy1089 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILY 318 (404)
Q Consensus 239 ~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~ 318 (404)
..+...||||.+....+.++..|...|+.+..+||+++.++|+.+-++|.+++ .. ++++|.|.|.|||-++...||+|
T Consensus 228 ~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~-~~-iiVAT~AFGMGIdKpdVRfViH~ 305 (590)
T COG0514 228 QLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDE-IK-VMVATNAFGMGIDKPDVRFVIHY 305 (590)
T ss_pred ccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCC-Cc-EEEEeccccCccCCCCceEEEEe
Confidence 34566899999999999999999999999999999999999999999999885 33 67788999999999999999999
Q ss_pred cCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCH
Q psy1089 319 DSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTY 354 (404)
Q Consensus 319 d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~Ti 354 (404)
|+|-+...|.|-+||+||.|.... .+-|+..+.+
T Consensus 306 ~lP~s~EsYyQE~GRAGRDG~~a~--aill~~~~D~ 339 (590)
T COG0514 306 DLPGSIESYYQETGRAGRDGLPAE--AILLYSPEDI 339 (590)
T ss_pred cCCCCHHHHHHHHhhccCCCCcce--EEEeeccccH
Confidence 999999999999999999997764 4445554443
No 78
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.08 E-value=8.7e-10 Score=118.76 Aligned_cols=118 Identities=24% Similarity=0.352 Sum_probs=93.2
Q ss_pred HHHHHHHHHHH-hhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHH-----HHHHHHhC----CC----
Q psy1089 226 KMIVLNQLLHK-LKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERN-----DAVQQFNG----ST---- 291 (404)
Q Consensus 226 Kl~~L~~ll~~-l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~-----~~i~~F~~----~~---- 291 (404)
|+..+...+.. +...+.++||||+....++.+...|...++ ..+||.+++.+|. .++++|.+ +.
T Consensus 256 Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~ 333 (844)
T TIGR02621 256 FLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARP 333 (844)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccc
Confidence 44444443333 234678999999999999999999998887 8899999999999 78999987 32
Q ss_pred -CceEEEeeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCc--EEEEEE
Q psy1089 292 -EWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKP--VCIYRL 348 (404)
Q Consensus 292 -~~~vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~--V~Vy~L 348 (404)
....+|++|+++++|||+.. ++||+...|+ ..|+||+||++|.|.... ++++.+
T Consensus 334 ~~g~~ILVATdVaerGLDId~-d~VI~d~aP~--esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 334 QQGTVYLVCTSAGEVGVNISA-DHLVCDLAPF--ESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred cccceEEeccchhhhcccCCc-ceEEECCCCH--HHHHHHhcccCCCCCCCCceEEEEee
Confidence 11467899999999999986 8899877664 789999999999998654 444433
No 79
>KOG1123|consensus
Probab=99.07 E-value=1.7e-09 Score=107.80 Aligned_cols=130 Identities=22% Similarity=0.262 Sum_probs=108.7
Q ss_pred ccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeec
Q psy1089 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLST 300 (404)
Q Consensus 221 ~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~ 300 (404)
+.+..|+++..-||+.+...|.|+|||+...-.+...+-.| |-+ .|+|.+++.+|.+++..|+..+.+..+++|
T Consensus 523 vMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl---~Kp--fIYG~Tsq~ERm~ILqnFq~n~~vNTIFlS- 596 (776)
T KOG1123|consen 523 VMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKL---GKP--FIYGPTSQNERMKILQNFQTNPKVNTIFLS- 596 (776)
T ss_pred ecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHc---CCc--eEECCCchhHHHHHHHhcccCCccceEEEe-
Confidence 34678999999999988889999999998776555444433 333 589999999999999999998877777776
Q ss_pred cccccCCCCCCCCEEEEecCCCCch-hHHHHHHhhhccCCCC----cEEEEEEEeCCCHHH
Q psy1089 301 RAGGQGLNLTAADTCILYDSDWNPQ-VDIQAEARCHRIGQTK----PVCIYRLVSHSTYQV 356 (404)
Q Consensus 301 ~a~g~GlnL~~a~~VI~~d~~wnp~-~~~Qa~gR~~R~Gq~~----~V~Vy~Li~~~TiEe 356 (404)
++|-.++||+.|+.+|....+.... .+.||.||+.|....+ .+..|.||+++|.|=
T Consensus 597 KVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM 657 (776)
T KOG1123|consen 597 KVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEM 657 (776)
T ss_pred eccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHH
Confidence 9999999999999999998887655 7889999999986433 389999999999874
No 80
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.05 E-value=2.7e-09 Score=119.90 Aligned_cols=165 Identities=16% Similarity=0.191 Sum_probs=115.2
Q ss_pred HHHHHhhhCCCeEEEEecchHHHHHHHHHHHhc--CCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCC
Q psy1089 232 QLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLE--NYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNL 309 (404)
Q Consensus 232 ~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~--gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL 309 (404)
.++.++. .+.+++|||+....++.+.+.|... ++.+..+||+++..+|.+++.+|.++. .. +|++|+++++|+|+
T Consensus 801 ~il~el~-r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk-~~-VLVaTdIierGIDI 877 (1147)
T PRK10689 801 AILREIL-RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQR-FN-VLVCTTIIETGIDI 877 (1147)
T ss_pred HHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcC-CC-EEEECchhhccccc
Confidence 3444443 4678999999999999999999866 788999999999999999999999985 44 57788999999999
Q ss_pred CCCCEEEEecCC-CCchhHHHHHHhhhccCCCCcEEEEEEEeCC-CHH----HHHHHHHhcCC--cccc-chhhhc-ccc
Q psy1089 310 TAADTCILYDSD-WNPQVDIQAEARCHRIGQTKPVCIYRLVSHS-TYQ----VHLFTIDSSGS--VSWS-SQSVKE-KLP 379 (404)
Q Consensus 310 ~~a~~VI~~d~~-wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~-TiE----e~i~~~~~~K~--~~~~-~~~~~~-~l~ 379 (404)
+.+++||+.+.+ ++...+.|+.||+||.|.+. .+|-+...+ .+. +++-.+.+.-. +-+. ++...+ +=+
T Consensus 878 P~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g--~a~ll~~~~~~~~~~~~~rl~~~~~~~~lg~gf~~a~~dl~~rg~ 955 (1147)
T PRK10689 878 PTANTIIIERADHFGLAQLHQLRGRVGRSHHQA--YAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGA 955 (1147)
T ss_pred ccCCEEEEecCCCCCHHHHHHHhhccCCCCCce--EEEEEeCCCcccCHHHHHHHHHHHHhcCCcchHHHHHHHHHhcCC
Confidence 999999987654 67778999999999998765 444443322 232 23322222111 0000 111111 112
Q ss_pred cccccccCc-ceecccHHHHHhh
Q psy1089 380 IGFMCVTGS-FLKSSSFFTYLQT 401 (404)
Q Consensus 380 ~~~~~~~~~-~~~~~~~~~~~~~ 401 (404)
..++....| .+.+..++-|++|
T Consensus 956 g~~~g~~q~g~~~~~g~~~y~~~ 978 (1147)
T PRK10689 956 GELLGEEQSGQMETIGFSLYMEL 978 (1147)
T ss_pred ccCCCCccCCCccccCHHHHHHH
Confidence 344554443 6888999999876
No 81
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.04 E-value=1.5e-09 Score=119.45 Aligned_cols=110 Identities=15% Similarity=0.205 Sum_probs=94.1
Q ss_pred hhCCCeEEEEecchHHHHHHHHHHHh--cCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEE
Q psy1089 238 KQTNHKTLVFSTMVKVLNFIEELCVL--ENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTC 315 (404)
Q Consensus 238 ~~~~~KvlIFs~~~~~l~~L~~~L~~--~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~V 315 (404)
...+.+++|||+....++.+...|+. .++++..+||.++..+|.+++.+|.++. . -+|++|.+.++|+|++.+++|
T Consensus 657 l~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk-~-~ILVaT~iie~GIDIp~v~~V 734 (926)
T TIGR00580 657 LLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGE-F-QVLVCTTIIETGIDIPNANTI 734 (926)
T ss_pred HHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCC-C-CEEEECChhhcccccccCCEE
Confidence 34678999999999999999999986 3789999999999999999999999985 3 367888999999999999999
Q ss_pred EEecCC-CCchhHHHHHHhhhccCCCCcEEEEEEEeC
Q psy1089 316 ILYDSD-WNPQVDIQAEARCHRIGQTKPVCIYRLVSH 351 (404)
Q Consensus 316 I~~d~~-wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~ 351 (404)
|+++.+ +....+.|+.||+||.|... .+|-|+..
T Consensus 735 Ii~~a~~~gls~l~Qr~GRvGR~g~~g--~aill~~~ 769 (926)
T TIGR00580 735 IIERADKFGLAQLYQLRGRVGRSKKKA--YAYLLYPH 769 (926)
T ss_pred EEecCCCCCHHHHHHHhcCCCCCCCCe--EEEEEECC
Confidence 999885 45668889999999998654 55555544
No 82
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.03 E-value=2e-09 Score=116.30 Aligned_cols=130 Identities=16% Similarity=0.256 Sum_probs=110.6
Q ss_pred CCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccc
Q psy1089 223 SSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRA 302 (404)
Q Consensus 223 ~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a 302 (404)
...|+.++.+.+..+...|..+||||.+....+.|...|...|+++..+++ ...+|+..+..|..++ ..++++|+.
T Consensus 580 ~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~--g~VtIATNM 655 (1025)
T PRK12900 580 RREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQK--GAVTIATNM 655 (1025)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCC--CeEEEeccC
Confidence 346999999999888888999999999999999999999999999999998 5778999999999885 347889999
Q ss_pred cccCCCCCCCC--------EEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHH
Q psy1089 303 GGQGLNLTAAD--------TCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTI 361 (404)
Q Consensus 303 ~g~GlnL~~a~--------~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~ 361 (404)
+|+|+|+.-.. +||..+.+-+...+.|+.||+||.|.......| + |.|+.++.+
T Consensus 656 AGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ff--v---SleD~Lmr~ 717 (1025)
T PRK12900 656 AGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFY--V---SLEDELMRL 717 (1025)
T ss_pred cCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEE--e---chhHHHHHh
Confidence 99999998332 459999999999999999999999988765333 2 456666654
No 83
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.01 E-value=3.3e-09 Score=114.25 Aligned_cols=117 Identities=12% Similarity=0.130 Sum_probs=91.6
Q ss_pred cHHHHHHHHHHHhhhCCCeEEEEecchH--------HHHHHHHHHHhc--CCceEeccCCcCHHHHHHHHHHHhCCCCce
Q psy1089 225 GKMIVLNQLLHKLKQTNHKTLVFSTMVK--------VLNFIEELCVLE--NYNYYRLHGSIRNEERNDAVQQFNGSTEWG 294 (404)
Q Consensus 225 ~Kl~~L~~ll~~l~~~~~KvlIFs~~~~--------~l~~L~~~L~~~--gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~ 294 (404)
.+...+.+.+......+++++|||.... ....+.+.|... ++++..+||+++.++|..++++|.++. ..
T Consensus 455 ~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~-~~ 533 (681)
T PRK10917 455 SRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGE-ID 533 (681)
T ss_pred ccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCC-CC
Confidence 3444555556555578899999997532 234455555543 578999999999999999999999985 33
Q ss_pred EEEeeccccccCCCCCCCCEEEEecCCC-CchhHHHHHHhhhccCCCCcE
Q psy1089 295 VFLLSTRAGGQGLNLTAADTCILYDSDW-NPQVDIQAEARCHRIGQTKPV 343 (404)
Q Consensus 295 vlLis~~a~g~GlnL~~a~~VI~~d~~w-np~~~~Qa~gR~~R~Gq~~~V 343 (404)
+|++|.+.++|+|+++++.||+++.+. ....+.|+.||+||.|....|
T Consensus 534 -ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ 582 (681)
T PRK10917 534 -ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYC 582 (681)
T ss_pred -EEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEE
Confidence 678889999999999999999999875 467788999999999876543
No 84
>KOG0347|consensus
Probab=99.01 E-value=3.7e-10 Score=113.55 Aligned_cols=103 Identities=19% Similarity=0.315 Sum_probs=94.5
Q ss_pred CCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEec
Q psy1089 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYD 319 (404)
Q Consensus 240 ~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~d 319 (404)
...+.||||+....+..|.-+|...+++...+|..+.+.+|-+.+++|.+.+ ..+|++|+++++|||+++..|||+|.
T Consensus 462 yPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~--~~VLiaTDVAARGLDIp~V~HVIHYq 539 (731)
T KOG0347|consen 462 YPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSP--SGVLIATDVAARGLDIPGVQHVIHYQ 539 (731)
T ss_pred cCCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCC--CeEEEeehhhhccCCCCCcceEEEee
Confidence 3468999999999999999999999999999999999999999999999975 45888999999999999999999999
Q ss_pred CCCCchhHHHHHHhhhccCCCCcEEE
Q psy1089 320 SDWNPQVDIQAEARCHRIGQTKPVCI 345 (404)
Q Consensus 320 ~~wnp~~~~Qa~gR~~R~Gq~~~V~V 345 (404)
-|-....|.||.||+.|.+... |.|
T Consensus 540 VPrtseiYVHRSGRTARA~~~G-vsv 564 (731)
T KOG0347|consen 540 VPRTSEIYVHRSGRTARANSEG-VSV 564 (731)
T ss_pred cCCccceeEecccccccccCCC-eEE
Confidence 9999999999999999997543 444
No 85
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.00 E-value=6.7e-09 Score=111.04 Aligned_cols=116 Identities=16% Similarity=0.219 Sum_probs=91.4
Q ss_pred HHHHHHHHHHhhhCCCeEEEEecch--------HHHHHHHHHHHh--cCCceEeccCCcCHHHHHHHHHHHhCCCCceEE
Q psy1089 227 MIVLNQLLHKLKQTNHKTLVFSTMV--------KVLNFIEELCVL--ENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVF 296 (404)
Q Consensus 227 l~~L~~ll~~l~~~~~KvlIFs~~~--------~~l~~L~~~L~~--~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vl 296 (404)
...+.+.+......+.+++|||... ...+.+.+.|.. .++.+..+||+++.++|..+++.|.++. .. +
T Consensus 434 ~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~-~~-I 511 (630)
T TIGR00643 434 KDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGE-VD-I 511 (630)
T ss_pred HHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCC-CC-E
Confidence 3455555555556789999999764 233445555543 4788999999999999999999999985 33 6
Q ss_pred EeeccccccCCCCCCCCEEEEecCCC-CchhHHHHHHhhhccCCCCcEE
Q psy1089 297 LLSTRAGGQGLNLTAADTCILYDSDW-NPQVDIQAEARCHRIGQTKPVC 344 (404)
Q Consensus 297 Lis~~a~g~GlnL~~a~~VI~~d~~w-np~~~~Qa~gR~~R~Gq~~~V~ 344 (404)
|++|.+.++|+|+++++.||+++.+. +...+.|+.||++|.|....|.
T Consensus 512 LVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~i 560 (630)
T TIGR00643 512 LVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCL 560 (630)
T ss_pred EEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEE
Confidence 77789999999999999999999885 5678889999999998765544
No 86
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.94 E-value=4.5e-09 Score=114.48 Aligned_cols=108 Identities=19% Similarity=0.225 Sum_probs=92.4
Q ss_pred CCCeEEEEecchHHHHHHHHHHHh---cCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEE
Q psy1089 240 TNHKTLVFSTMVKVLNFIEELCVL---ENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCI 316 (404)
Q Consensus 240 ~~~KvlIFs~~~~~l~~L~~~L~~---~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI 316 (404)
.+.++|||+.....++.+...|.. .++.+..+||+++.++|.++++.|.++. .-+|++|+.+.+||++.++++||
T Consensus 208 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~--rkVlVATnIAErgItIp~V~~VI 285 (819)
T TIGR01970 208 ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGR--RKVVLATNIAETSLTIEGIRVVI 285 (819)
T ss_pred cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCC--eEEEEecchHhhcccccCceEEE
Confidence 457899999999999999999976 4788999999999999999999999873 44678899999999999999999
Q ss_pred EecCC----CCchh--------------HHHHHHhhhccCCCCcEEEEEEEeCC
Q psy1089 317 LYDSD----WNPQV--------------DIQAEARCHRIGQTKPVCIYRLVSHS 352 (404)
Q Consensus 317 ~~d~~----wnp~~--------------~~Qa~gR~~R~Gq~~~V~Vy~Li~~~ 352 (404)
.++.+ +||.. +.||.||+||. ++=.+|+|+++.
T Consensus 286 D~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~ 336 (819)
T TIGR01970 286 DSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEE 336 (819)
T ss_pred EcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHH
Confidence 99875 45554 67998888887 455789998764
No 87
>PRK02362 ski2-like helicase; Provisional
Probab=98.93 E-value=9.5e-09 Score=111.89 Aligned_cols=117 Identities=20% Similarity=0.109 Sum_probs=91.6
Q ss_pred HHHHhhhCCCeEEEEecchHHHHHHHHHHHhc------------------------------------CCceEeccCCcC
Q psy1089 233 LLHKLKQTNHKTLVFSTMVKVLNFIEELCVLE------------------------------------NYNYYRLHGSIR 276 (404)
Q Consensus 233 ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~------------------------------------gi~~~~i~G~~~ 276 (404)
++......+.++||||+.....+.++..|... ...+..+||+++
T Consensus 235 ~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~ 314 (737)
T PRK02362 235 LVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLS 314 (737)
T ss_pred HHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCC
Confidence 33333457789999999999888777666432 124677899999
Q ss_pred HHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEE----ec-----CCCCchhHHHHHHhhhccCCCCcEEEEE
Q psy1089 277 NEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCIL----YD-----SDWNPQVDIQAEARCHRIGQTKPVCIYR 347 (404)
Q Consensus 277 ~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~----~d-----~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~ 347 (404)
..+|..+.+.|+++. ++ +|++|.+.++|+|+++...||. || .|.+...|.|++||+||.|....-.++-
T Consensus 315 ~~eR~~ve~~Fr~G~-i~-VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii 392 (737)
T PRK02362 315 REHRELVEDAFRDRL-IK-VISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVL 392 (737)
T ss_pred HHHHHHHHHHHHcCC-Ce-EEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEE
Confidence 999999999999984 44 6777899999999999988886 66 5778889999999999999875545555
Q ss_pred EEeC
Q psy1089 348 LVSH 351 (404)
Q Consensus 348 Li~~ 351 (404)
+...
T Consensus 393 ~~~~ 396 (737)
T PRK02362 393 LAKS 396 (737)
T ss_pred EecC
Confidence 5543
No 88
>KOG0354|consensus
Probab=98.92 E-value=3.7e-08 Score=103.82 Aligned_cols=130 Identities=18% Similarity=0.237 Sum_probs=102.7
Q ss_pred CcHHHHHHHHHHHhhh--CCCeEEEEecchHHHHHHHHHHH---hcCCceEeccC--------CcCHHHHHHHHHHHhCC
Q psy1089 224 SGKMIVLNQLLHKLKQ--TNHKTLVFSTMVKVLNFIEELCV---LENYNYYRLHG--------SIRNEERNDAVQQFNGS 290 (404)
Q Consensus 224 S~Kl~~L~~ll~~l~~--~~~KvlIFs~~~~~l~~L~~~L~---~~gi~~~~i~G--------~~~~~~R~~~i~~F~~~ 290 (404)
.+|+..|.+.+.+... ...++|||+.+...++.|..+|. ..|+....+-| ++++.+.+++++.|++|
T Consensus 394 npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G 473 (746)
T KOG0354|consen 394 NPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDG 473 (746)
T ss_pred ChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCC
Confidence 6899999999987654 56899999999999999999887 23444444433 58889999999999998
Q ss_pred CCceEEEeeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHH
Q psy1089 291 TEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTI 361 (404)
Q Consensus 291 ~~~~vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~ 361 (404)
. .. +|++|.+|.+|||+..|+.||.||..-||-...||.|| ||.- .-+++-|.+ +.++.-+++
T Consensus 474 ~-~N-vLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa~---ns~~vll~t--~~~~~~~E~ 536 (746)
T KOG0354|consen 474 E-IN-VLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRAR---NSKCVLLTT--GSEVIEFER 536 (746)
T ss_pred C-cc-EEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-cccc---CCeEEEEEc--chhHHHHHH
Confidence 5 33 67788999999999999999999999999999999999 6654 445555555 444444443
No 89
>PHA02653 RNA helicase NPH-II; Provisional
Probab=98.90 E-value=1.1e-08 Score=109.14 Aligned_cols=109 Identities=14% Similarity=0.186 Sum_probs=89.7
Q ss_pred CCCeEEEEecchHHHHHHHHHHHhc--CCceEeccCCcCHHHHHHHHHHHh-CCCCceEEEeeccccccCCCCCCCCEEE
Q psy1089 240 TNHKTLVFSTMVKVLNFIEELCVLE--NYNYYRLHGSIRNEERNDAVQQFN-GSTEWGVFLLSTRAGGQGLNLTAADTCI 316 (404)
Q Consensus 240 ~~~KvlIFs~~~~~l~~L~~~L~~~--gi~~~~i~G~~~~~~R~~~i~~F~-~~~~~~vlLis~~a~g~GlnL~~a~~VI 316 (404)
.+.++|||+.....++.+.+.|... ++.+..+||++++. ++.+++|. ++ ..-+|++|+.+++||+++++++||
T Consensus 394 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~g--k~kILVATdIAERGIDIp~V~~VI 469 (675)
T PHA02653 394 KGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSK--NPSIIISTPYLESSVTIRNATHVY 469 (675)
T ss_pred cCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccC--ceeEEeccChhhccccccCeeEEE
Confidence 4568999999999999999999876 79999999999974 56777874 44 345788999999999999999999
Q ss_pred Eec---CC---------CCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHH
Q psy1089 317 LYD---SD---------WNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355 (404)
Q Consensus 317 ~~d---~~---------wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiE 355 (404)
.++ .| .+.+.+.||.||+||. ++-.+|+|+++....
T Consensus 470 D~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~~G~c~rLyt~~~~~ 517 (675)
T PHA02653 470 DTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---SPGTYVYFYDLDLLK 517 (675)
T ss_pred ECCCccCCCcccCcccccCHHHHHHhccCcCCC---CCCeEEEEECHHHhH
Confidence 997 22 2556788999988887 357889999887653
No 90
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=98.88 E-value=3.8e-08 Score=106.22 Aligned_cols=132 Identities=16% Similarity=0.206 Sum_probs=116.4
Q ss_pred ccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeec
Q psy1089 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLST 300 (404)
Q Consensus 221 ~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~ 300 (404)
.....|+.++.+-+..+...|..|||||.+....+.|...|...|+++..++|.....+|+.+...|+.|. ++++|
T Consensus 424 ~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~----VtIAT 499 (896)
T PRK13104 424 LTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA----VTIAT 499 (896)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc----EEEec
Confidence 34567999999999988899999999999999999999999999999999999999999999999999983 78899
Q ss_pred cccccCCCCC--------------------------------------CCCEEEEecCCCCchhHHHHHHhhhccCCCCc
Q psy1089 301 RAGGQGLNLT--------------------------------------AADTCILYDSDWNPQVDIQAEARCHRIGQTKP 342 (404)
Q Consensus 301 ~a~g~GlnL~--------------------------------------~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~ 342 (404)
..+|+|+|+. +.=|||--+.+-+...+.|--||+||.|....
T Consensus 500 NmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGs 579 (896)
T PRK13104 500 NMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGS 579 (896)
T ss_pred cCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCc
Confidence 9999999975 34589999999999999999999999998876
Q ss_pred EEEEEEEeCCCHHHHHHHH
Q psy1089 343 VCIYRLVSHSTYQVHLFTI 361 (404)
Q Consensus 343 V~Vy~Li~~~TiEe~i~~~ 361 (404)
...|- |+|+.++.+
T Consensus 580 s~f~l-----SleD~l~~~ 593 (896)
T PRK13104 580 SRFYL-----SLEDNLMRI 593 (896)
T ss_pred eEEEE-----EcCcHHHHH
Confidence 65553 456666654
No 91
>KOG0337|consensus
Probab=98.88 E-value=3.7e-09 Score=103.55 Aligned_cols=167 Identities=19% Similarity=0.198 Sum_probs=130.3
Q ss_pred HHHHHHhCCCCccccCCcccCCCcccccccccccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCce
Q psy1089 189 MVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNY 268 (404)
Q Consensus 189 ~~Lr~ic~hP~L~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~ 268 (404)
..-++-..+|.++..+.+..-.. ........+....|..+|..++..... .++.+||+.....++++...|...|+.+
T Consensus 211 ~fakaGl~~p~lVRldvetkise-~lk~~f~~~~~a~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~g~~~ 288 (529)
T KOG0337|consen 211 DFAKAGLVPPVLVRLDVETKISE-LLKVRFFRVRKAEKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDFGGEG 288 (529)
T ss_pred HHHHccCCCCceEEeehhhhcch-hhhhheeeeccHHHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhcCCCc
Confidence 34456667888877533322211 122223345566788888888876543 5689999999999999999999999999
Q ss_pred EeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEE
Q psy1089 269 YRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRL 348 (404)
Q Consensus 269 ~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~L 348 (404)
..++|++.+..|...+.+|+.+. .-+|+.|+.|++|++++..+.||+||.|-.+..+.+|.||+.|.|.+ -..|-+
T Consensus 289 s~iysslD~~aRk~~~~~F~~~k--~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrt--g~aYs~ 364 (529)
T KOG0337|consen 289 SDIYSSLDQEARKINGRDFRGRK--TSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRT--GRAYSL 364 (529)
T ss_pred cccccccChHhhhhccccccCCc--cceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhcccc--ceEEEE
Confidence 99999999999999999999885 33778889999999999999999999999999999999999999966 467777
Q ss_pred EeCCCHHHHHHHHH
Q psy1089 349 VSHSTYQVHLFTID 362 (404)
Q Consensus 349 i~~~TiEe~i~~~~ 362 (404)
|+.+ -+-+++++.
T Consensus 365 V~~~-~~~yl~DL~ 377 (529)
T KOG0337|consen 365 VAST-DDPYLLDLQ 377 (529)
T ss_pred Eecc-cchhhhhhh
Confidence 7764 334444443
No 92
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=98.86 E-value=4.3e-08 Score=105.60 Aligned_cols=162 Identities=15% Similarity=0.175 Sum_probs=124.9
Q ss_pred HHHHHHHhCCCCccccCCcccCCCcccccc-cccccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCC
Q psy1089 188 TMVLRNIISHPYLINKPYRIVDGKKEMVCD-ENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENY 266 (404)
Q Consensus 188 l~~Lr~ic~hP~L~~~~~~~~~~~~~~~~~-~~~~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi 266 (404)
...++++-+-+...-+...+.- ....+ ........|+.++.+.+..+...|..|||||.+....+.|...|...|+
T Consensus 379 ~~E~~~iY~l~vv~IPtnkp~~---r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi 455 (830)
T PRK12904 379 AEEFREIYNLDVVVIPTNRPMI---RIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGI 455 (830)
T ss_pred HHHHHHHhCCCEEEcCCCCCee---eeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCC
Confidence 3456666666655444322111 11111 1223445799999999988878899999999999999999999999999
Q ss_pred ceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCC-C----------------------------------
Q psy1089 267 NYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLT-A---------------------------------- 311 (404)
Q Consensus 267 ~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~-~---------------------------------- 311 (404)
++..++|. ..+|+..+..|..++ ..++++|+.+|+|+|+. +
T Consensus 456 ~~~vLnak--q~eREa~Iia~Ag~~--g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 531 (830)
T PRK12904 456 PHNVLNAK--NHEREAEIIAQAGRP--GAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVL 531 (830)
T ss_pred ceEeccCc--hHHHHHHHHHhcCCC--ceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHH
Confidence 99999995 678999999999885 34788899999999975 3
Q ss_pred ---CCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHH
Q psy1089 312 ---ADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTI 361 (404)
Q Consensus 312 ---a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~ 361 (404)
.=|||-.+.+-|...+.|.-||+||.|.......|- |+|+.++.+
T Consensus 532 ~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~l-----SleD~l~~~ 579 (830)
T PRK12904 532 EAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYL-----SLEDDLMRI 579 (830)
T ss_pred HcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEE-----EcCcHHHHh
Confidence 568999999999999999999999999987766553 455555544
No 93
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=98.85 E-value=1e-08 Score=111.84 Aligned_cols=108 Identities=17% Similarity=0.203 Sum_probs=91.8
Q ss_pred CCCeEEEEecchHHHHHHHHHHHh---cCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEE
Q psy1089 240 TNHKTLVFSTMVKVLNFIEELCVL---ENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCI 316 (404)
Q Consensus 240 ~~~KvlIFs~~~~~l~~L~~~L~~---~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI 316 (404)
.+..+|||+.....++.+.+.|.. .++.+..+||+++.++|.+++..|.++ ..-+|++|+.+.+||++.++++||
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G--~rkVlvATnIAErsLtIp~V~~VI 288 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAG--RRKVVLATNIAETSLTIEGIRLVV 288 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCC--CeEEEEecchHHhcccccCceEEE
Confidence 467899999999999999999986 578899999999999999999999887 345788999999999999999999
Q ss_pred EecCC----CCch--------------hHHHHHHhhhccCCCCcEEEEEEEeCC
Q psy1089 317 LYDSD----WNPQ--------------VDIQAEARCHRIGQTKPVCIYRLVSHS 352 (404)
Q Consensus 317 ~~d~~----wnp~--------------~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~ 352 (404)
.++.+ ++|. .+.||.||+||. .+-.+|+|+++.
T Consensus 289 D~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~ 339 (812)
T PRK11664 289 DSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKE 339 (812)
T ss_pred ECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHH
Confidence 97765 3332 577888888886 367899998865
No 94
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=98.84 E-value=2.3e-08 Score=113.71 Aligned_cols=97 Identities=16% Similarity=0.170 Sum_probs=85.1
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhcC---------------------------------CceEeccCCcCHHHHHHHHH
Q psy1089 239 QTNHKTLVFSTMVKVLNFIEELCVLEN---------------------------------YNYYRLHGSIRNEERNDAVQ 285 (404)
Q Consensus 239 ~~~~KvlIFs~~~~~l~~L~~~L~~~g---------------------------------i~~~~i~G~~~~~~R~~~i~ 285 (404)
..+.++||||+.....+.+...|.... +.+..+||+++.++|..+.+
T Consensus 242 ~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~ 321 (1490)
T PRK09751 242 LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQ 321 (1490)
T ss_pred hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHH
Confidence 356899999999999999998886431 11456889999999999999
Q ss_pred HHhCCCCceEEEeeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhcc
Q psy1089 286 QFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRI 337 (404)
Q Consensus 286 ~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~ 337 (404)
.|+++. .+ +|++|.+.+.|||+...++||+++.|.+...+.|++||++|.
T Consensus 322 ~fK~G~-Lr-vLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 322 ALKSGE-LR-CVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHHhCC-ce-EEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 999995 44 677889999999999999999999999999999999999996
No 95
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=98.84 E-value=7.6e-08 Score=103.72 Aligned_cols=132 Identities=15% Similarity=0.195 Sum_probs=115.6
Q ss_pred ccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeec
Q psy1089 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLST 300 (404)
Q Consensus 221 ~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~ 300 (404)
.....|+.++.+-+..+.+.|..|||||.+....+.+...|...|+++..+++..+..++..+...|+.|. ++++|
T Consensus 429 ~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~----VtIAT 504 (908)
T PRK13107 429 LTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA----VTIAT 504 (908)
T ss_pred eCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc----EEEec
Confidence 34578999999999999899999999999999999999999999999999999999999999999999984 78899
Q ss_pred cccccCCCCC-------------------------------------CCCEEEEecCCCCchhHHHHHHhhhccCCCCcE
Q psy1089 301 RAGGQGLNLT-------------------------------------AADTCILYDSDWNPQVDIQAEARCHRIGQTKPV 343 (404)
Q Consensus 301 ~a~g~GlnL~-------------------------------------~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V 343 (404)
..+|+|+|+. +.=|||-.+.+-+...+.|.-||+||.|.....
T Consensus 505 nmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss 584 (908)
T PRK13107 505 NMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSS 584 (908)
T ss_pred CCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCce
Confidence 9999999975 345899999999999999999999999987765
Q ss_pred EEEEEEeCCCHHHHHHHH
Q psy1089 344 CIYRLVSHSTYQVHLFTI 361 (404)
Q Consensus 344 ~Vy~Li~~~TiEe~i~~~ 361 (404)
..|- |+|+.++.+
T Consensus 585 ~f~l-----SlED~L~r~ 597 (908)
T PRK13107 585 RFYL-----SMEDSLMRI 597 (908)
T ss_pred eEEE-----EeCcHHHHH
Confidence 5542 455555544
No 96
>PRK01172 ski2-like helicase; Provisional
Probab=98.78 E-value=8.8e-08 Score=103.41 Aligned_cols=112 Identities=21% Similarity=0.163 Sum_probs=87.1
Q ss_pred HHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcC-------------------------CceEeccCCcCHHHHHHHH
Q psy1089 230 LNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLEN-------------------------YNYYRLHGSIRNEERNDAV 284 (404)
Q Consensus 230 L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~g-------------------------i~~~~i~G~~~~~~R~~~i 284 (404)
+..++......++++|||++.....+.+...|.... ..+..+||+++.++|..+.
T Consensus 225 ~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve 304 (674)
T PRK01172 225 INSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIE 304 (674)
T ss_pred HHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHH
Confidence 445566555678899999999998888877775320 1356789999999999999
Q ss_pred HHHhCCCCceEEEeeccccccCCCCCCCCEEEEecC---------CCCchhHHHHHHhhhccCCCCcEE
Q psy1089 285 QQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDS---------DWNPQVDIQAEARCHRIGQTKPVC 344 (404)
Q Consensus 285 ~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~d~---------~wnp~~~~Qa~gR~~R~Gq~~~V~ 344 (404)
+.|+++. ++ +|++|.++++|+|+++ ..||+.+. ++++..+.|++||+||.|....-.
T Consensus 305 ~~f~~g~-i~-VLvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~ 370 (674)
T PRK01172 305 EMFRNRY-IK-VIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGI 370 (674)
T ss_pred HHHHcCC-Ce-EEEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcce
Confidence 9999984 44 5777899999999996 56777654 356678899999999999765533
No 97
>KOG0349|consensus
Probab=98.78 E-value=1.8e-08 Score=98.95 Aligned_cols=97 Identities=20% Similarity=0.278 Sum_probs=88.0
Q ss_pred CCCeEEEEecchHHHHHHHHHHHhcC---CceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEE
Q psy1089 240 TNHKTLVFSTMVKVLNFIEELCVLEN---YNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCI 316 (404)
Q Consensus 240 ~~~KvlIFs~~~~~l~~L~~~L~~~g---i~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI 316 (404)
.-.|+||||.....+|-|++++..+| ++++.++|...+.+|.+.++.|...+ + -+|++++++++||++++..++|
T Consensus 504 ~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~d-v-kflictdvaargldi~g~p~~i 581 (725)
T KOG0349|consen 504 AMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFD-V-KFLICTDVAARGLDITGLPFMI 581 (725)
T ss_pred ccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcC-e-EEEEEehhhhccccccCCceEE
Confidence 34799999999999999999998654 57899999999999999999999985 3 3788899999999999999999
Q ss_pred EecCCCCchhHHHHHHhhhccC
Q psy1089 317 LYDSDWNPQVDIQAEARCHRIG 338 (404)
Q Consensus 317 ~~d~~wnp~~~~Qa~gR~~R~G 338 (404)
+..+|-+...|.+||||++|.-
T Consensus 582 nvtlpd~k~nyvhrigrvgrae 603 (725)
T KOG0349|consen 582 NVTLPDDKTNYVHRIGRVGRAE 603 (725)
T ss_pred EEecCcccchhhhhhhccchhh
Confidence 9999999999999999998864
No 98
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=98.76 E-value=2.7e-08 Score=100.89 Aligned_cols=182 Identities=14% Similarity=0.137 Sum_probs=135.8
Q ss_pred hhHHHHHHHHHHHhCCCCccccCCcccCCC---------------ccccccccc---ccCCcHHHHHHHHHHHhhh----
Q psy1089 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGK---------------KEMVCDENI---VSSSGKMIVLNQLLHKLKQ---- 239 (404)
Q Consensus 182 ~~l~~~l~~Lr~ic~hP~L~~~~~~~~~~~---------------~~~~~~~~~---~~~S~Kl~~L~~ll~~l~~---- 239 (404)
..+-..+.+||..|..-..+..+....... ...+...++ -..+.|+..+.++.+.-..
T Consensus 357 ~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~elA~~l~a~lV~y~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~ss 436 (830)
T COG1202 357 PRLDGLIGRLRYLFPGAQFIYLSATVGNPEELAKKLGAKLVLYDERPVPLERHLVFARNESEKWDIIARLVKREFSTESS 436 (830)
T ss_pred cchhhHHHHHHHhCCCCeEEEEEeecCChHHHHHHhCCeeEeecCCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhc
Confidence 457778899999988554443322111100 011111222 1258899999999875321
Q ss_pred --CCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEE-
Q psy1089 240 --TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCI- 316 (404)
Q Consensus 240 --~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI- 316 (404)
-..++|||+++.+-+..|+.+|..+|++...+|++++..+|..+-..|.++. .. .+++|.|.|.|.|+++...|+
T Consensus 437 kg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~-l~-~VVTTAAL~AGVDFPASQVIFE 514 (830)
T COG1202 437 KGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQE-LA-AVVTTAALAAGVDFPASQVIFE 514 (830)
T ss_pred cCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCC-cc-eEeehhhhhcCCCCchHHHHHH
Confidence 2368999999999999999999999999999999999999999999999985 33 567889999999999765431
Q ss_pred --EecC-CCCchhHHHHHHhhhccCCCCcEEEEEEEeC---------CCHHHHHHHHHhcC
Q psy1089 317 --LYDS-DWNPQVDIQAEARCHRIGQTKPVCIYRLVSH---------STYQVHLFTIDSSG 365 (404)
Q Consensus 317 --~~d~-~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~---------~TiEe~i~~~~~~K 365 (404)
-|.. |-+|..+.|-.||+||.|-...-.||-++-. +|-||.-+.+++.-
T Consensus 515 sLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL~s~ 575 (830)
T COG1202 515 SLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEETEDEVAFKLLESE 575 (830)
T ss_pred HHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCChhhcccccccHHHHHHHHhcCC
Confidence 2444 4478899999999999998887788888754 68888888888763
No 99
>PRK00254 ski2-like helicase; Provisional
Probab=98.72 E-value=8.6e-08 Score=104.20 Aligned_cols=121 Identities=14% Similarity=0.001 Sum_probs=88.9
Q ss_pred HHHHHHhhhCCCeEEEEecchHHHHHHHHHHHh---------------------------------cCCceEeccCCcCH
Q psy1089 231 NQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVL---------------------------------ENYNYYRLHGSIRN 277 (404)
Q Consensus 231 ~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~---------------------------------~gi~~~~i~G~~~~ 277 (404)
..++......+.++||||+.....+.++..|.. .+..+..+||++++
T Consensus 228 ~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~ 307 (720)
T PRK00254 228 ESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGR 307 (720)
T ss_pred HHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCH
Confidence 344444455788999999998877655544421 12247789999999
Q ss_pred HHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEE-------ecCCCC-chhHHHHHHhhhccCCCCcEEEEEEE
Q psy1089 278 EERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCIL-------YDSDWN-PQVDIQAEARCHRIGQTKPVCIYRLV 349 (404)
Q Consensus 278 ~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~-------~d~~wn-p~~~~Qa~gR~~R~Gq~~~V~Vy~Li 349 (404)
++|..+.+.|++|. ++ +|++|.+.+.|+|+++.+.||. ++.+.- ...+.|++||+||.|....-.++-+.
T Consensus 308 ~eR~~ve~~F~~G~-i~-VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~ 385 (720)
T PRK00254 308 TERVLIEDAFREGL-IK-VITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVA 385 (720)
T ss_pred HHHHHHHHHHHCCC-Ce-EEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEe
Confidence 99999999999984 44 6778899999999998888874 333332 34789999999999876655666665
Q ss_pred eCCC
Q psy1089 350 SHST 353 (404)
Q Consensus 350 ~~~T 353 (404)
..+.
T Consensus 386 ~~~~ 389 (720)
T PRK00254 386 TTEE 389 (720)
T ss_pred cCcc
Confidence 5544
No 100
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.62 E-value=2e-07 Score=104.94 Aligned_cols=122 Identities=17% Similarity=0.206 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHhhh-CCCeEEEEecchHHHHHHHHHHHhcC---CceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecc
Q psy1089 226 KMIVLNQLLHKLKQ-TNHKTLVFSTMVKVLNFIEELCVLEN---YNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTR 301 (404)
Q Consensus 226 Kl~~L~~ll~~l~~-~~~KvlIFs~~~~~l~~L~~~L~~~g---i~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~ 301 (404)
+...+...+..+.. ...++|||+.....++.+...|...+ +.+..+||+++.++|.+++..+ + ..-+|++|+
T Consensus 263 ~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~---~-~rkIVLATN 338 (1283)
T TIGR01967 263 QLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH---S-GRRIVLATN 338 (1283)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC---C-CceEEEecc
Confidence 45556666655443 45789999999999999999998764 4578899999999999885543 2 245788899
Q ss_pred ccccCCCCCCCCEEEEecCC------------------CCchhHHHHHHhhhccCCCCcEEEEEEEeCCCH
Q psy1089 302 AGGQGLNLTAADTCILYDSD------------------WNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTY 354 (404)
Q Consensus 302 a~g~GlnL~~a~~VI~~d~~------------------wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~Ti 354 (404)
.+.+||++.+..+||.++.+ -+...+.||.||+||.| +-.+|+|+++...
T Consensus 339 IAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~ 406 (1283)
T TIGR01967 339 VAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDF 406 (1283)
T ss_pred HHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHH
Confidence 99999999999999998732 13357889999999997 5578999986543
No 101
>KOG0351|consensus
Probab=98.61 E-value=1.4e-07 Score=103.28 Aligned_cols=110 Identities=13% Similarity=0.113 Sum_probs=100.6
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEe
Q psy1089 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILY 318 (404)
Q Consensus 239 ~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~ 318 (404)
..+...||||.....++.+...|+..|+....||++++..+|..+-..|..+. ++ +++.|-|.|.|||-.....||+|
T Consensus 483 ~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~-~~-VivATVAFGMGIdK~DVR~ViH~ 560 (941)
T KOG0351|consen 483 HPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDK-IR-VIVATVAFGMGIDKPDVRFVIHY 560 (941)
T ss_pred CCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCC-Ce-EEEEEeeccCCCCCCceeEEEEC
Confidence 46789999999999999999999999999999999999999999999999996 44 56777999999999999999999
Q ss_pred cCCCCchhHHHHHHhhhccCCCCcEEEEEEEe
Q psy1089 319 DSDWNPQVDIQAEARCHRIGQTKPVCIYRLVS 350 (404)
Q Consensus 319 d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~ 350 (404)
..|-+..-|.|..||+||.|+...+..|+=..
T Consensus 561 ~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~ 592 (941)
T KOG0351|consen 561 SLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYA 592 (941)
T ss_pred CCchhHHHHHHhccccCcCCCcceeEEecchh
Confidence 99999999999999999999998877765433
No 102
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=98.57 E-value=2.7e-07 Score=92.17 Aligned_cols=100 Identities=16% Similarity=0.133 Sum_probs=77.7
Q ss_pred cHHHHHHHHHHHhh-----hCCCeEEEEecchHHHHHHHHHHHhcC--CceEeccCCcCHHHHHHHHHHHhCCCCceEEE
Q psy1089 225 GKMIVLNQLLHKLK-----QTNHKTLVFSTMVKVLNFIEELCVLEN--YNYYRLHGSIRNEERNDAVQQFNGSTEWGVFL 297 (404)
Q Consensus 225 ~Kl~~L~~ll~~l~-----~~~~KvlIFs~~~~~l~~L~~~L~~~g--i~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL 297 (404)
-|...+..++..+. ..+.|+|||++....++.+...|+..| +.+..++|..++.+|.+.. ...+|
T Consensus 251 ~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~--------~~~iL 322 (357)
T TIGR03158 251 FKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM--------QFDIL 322 (357)
T ss_pred hhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc--------cCCEE
Confidence 34554544444332 257899999999999999999998765 5778899999999887653 12378
Q ss_pred eeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhh
Q psy1089 298 LSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCH 335 (404)
Q Consensus 298 is~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~ 335 (404)
++|+++++|||+... +|| ++ |-++..|.||+||+|
T Consensus 323 VaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 323 LGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred EEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 899999999999864 666 56 678889999999985
No 103
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.55 E-value=3.6e-08 Score=94.98 Aligned_cols=48 Identities=35% Similarity=0.675 Sum_probs=43.1
Q ss_pred CcccccchhhhhhhchhhccCCCCeeEEEecCCCHHHHHHHHHHHhhh
Q psy1089 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKT 48 (404)
Q Consensus 1 l~~ll~pf~LRR~K~~V~~~LP~K~~~~v~~~lt~~Q~~~Y~~~~~~~ 48 (404)
|..++++|++||+++++..+||++.+.++.|+||+.|+++|+.+.+..
T Consensus 217 L~~~l~~~~~r~~~~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~ 264 (299)
T PF00176_consen 217 LRELLSEFMIRRTKKDVEKELPPKIEHVINVELSPEQRELYNELLKEA 264 (299)
T ss_dssp HHHHHCCCEECHCGGGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHHH
T ss_pred cccccchhhhhhhcccccccCCceEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 356789999999999998899999999999999999999999888665
No 104
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=98.51 E-value=8.3e-07 Score=99.85 Aligned_cols=106 Identities=14% Similarity=0.208 Sum_probs=87.5
Q ss_pred CCeEEEEecchHHHHHHHHHHHhc------CC---ceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCC
Q psy1089 241 NHKTLVFSTMVKVLNFIEELCVLE------NY---NYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTA 311 (404)
Q Consensus 241 ~~KvlIFs~~~~~l~~L~~~L~~~------gi---~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~ 311 (404)
+.|+||||......+.+.+.|... ++ .+..++|+++ ++.+++++|.++. ...++++.+..++|+|.+.
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~-~p~IlVsvdmL~TG~DvP~ 774 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNER-LPNIVVTVDLLTTGIDVPS 774 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCC-CCeEEEEecccccCCCccc
Confidence 479999999999888877776532 22 3456899886 5788999999875 4467888999999999999
Q ss_pred CCEEEEecCCCCchhHHHHHHhhhccCC---CCcEEEEEEE
Q psy1089 312 ADTCILYDSDWNPQVDIQAEARCHRIGQ---TKPVCIYRLV 349 (404)
Q Consensus 312 a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq---~~~V~Vy~Li 349 (404)
+++||++.++-++..|.|++||+.|... +....||.++
T Consensus 775 v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D~v 815 (1123)
T PRK11448 775 ICNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFDAV 815 (1123)
T ss_pred ccEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEehH
Confidence 9999999999999999999999999854 5557777654
No 105
>PRK09694 helicase Cas3; Provisional
Probab=98.45 E-value=1.4e-06 Score=95.53 Aligned_cols=106 Identities=17% Similarity=0.156 Sum_probs=84.7
Q ss_pred HHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcC---CceEeccCCcCHHHH----HHHHHHH-hCCCC-ceEEEeeccc
Q psy1089 232 QLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLEN---YNYYRLHGSIRNEER----NDAVQQF-NGSTE-WGVFLLSTRA 302 (404)
Q Consensus 232 ~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~g---i~~~~i~G~~~~~~R----~~~i~~F-~~~~~-~~vlLis~~a 302 (404)
+.+......|.+++||++....+..+.+.|+..+ .++..+||.++..+| .++++.| +++.. ...+|++|++
T Consensus 551 ~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQV 630 (878)
T PRK09694 551 QRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQV 630 (878)
T ss_pred HHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcc
Confidence 3333334578899999999999999999998764 678999999999999 4678889 44431 2468899999
Q ss_pred cccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCC
Q psy1089 303 GGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQT 340 (404)
Q Consensus 303 ~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~ 340 (404)
...|+|+ .++.+|....| ...+.||.||+||.|..
T Consensus 631 iE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 631 VEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred hhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 9999999 46888876555 46889999999999874
No 106
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=98.44 E-value=1.2e-06 Score=98.60 Aligned_cols=120 Identities=18% Similarity=0.193 Sum_probs=92.5
Q ss_pred HHHHHHHHHhh-hCCCeEEEEecchHHHHHHHHHHHhcCCc---eEeccCCcCHHHHHHHHHHHhCCCCceEEEeecccc
Q psy1089 228 IVLNQLLHKLK-QTNHKTLVFSTMVKVLNFIEELCVLENYN---YYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAG 303 (404)
Q Consensus 228 ~~L~~ll~~l~-~~~~KvlIFs~~~~~l~~L~~~L~~~gi~---~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~ 303 (404)
..+...+..+. ....++|||+.....++.+.+.|...+++ +..+||+++.++|.++++.+ + ..-+|++|+.+
T Consensus 272 ~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~--g--~rkIIVATNIA 347 (1294)
T PRK11131 272 QAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH--S--GRRIVLATNVA 347 (1294)
T ss_pred HHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc--C--CeeEEEeccHH
Confidence 33334343332 34578999999999999999999987765 56899999999999987752 2 34578899999
Q ss_pred ccCCCCCCCCEEEEec---------------CCCCc---hhHHHHHHhhhccCCCCcEEEEEEEeCCCH
Q psy1089 304 GQGLNLTAADTCILYD---------------SDWNP---QVDIQAEARCHRIGQTKPVCIYRLVSHSTY 354 (404)
Q Consensus 304 g~GlnL~~a~~VI~~d---------------~~wnp---~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~Ti 354 (404)
++||++++..+||.++ ++..| ..+.||.||+||.+ +-.+|+|+++..+
T Consensus 348 EtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~---~G~c~rLyte~d~ 413 (1294)
T PRK11131 348 ETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVS---EGICIRLYSEDDF 413 (1294)
T ss_pred hhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCCC---CcEEEEeCCHHHH
Confidence 9999999999999985 33333 57889999988883 5578899886543
No 107
>PRK09401 reverse gyrase; Reviewed
Probab=98.41 E-value=1.1e-06 Score=99.35 Aligned_cols=104 Identities=14% Similarity=0.076 Sum_probs=88.5
Q ss_pred cHHHHHHHHHHHhhhCCCeEEEEecchHH---HHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEee--
Q psy1089 225 GKMIVLNQLLHKLKQTNHKTLVFSTMVKV---LNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLS-- 299 (404)
Q Consensus 225 ~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~---l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis-- 299 (404)
.|...|.+++..+ +..+||||+.... ++.+...|...|+++..+||++ .+.+++|.+|. +.||+.+
T Consensus 315 ~k~~~L~~ll~~l---~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~-~~VLVatas 385 (1176)
T PRK09401 315 DSVEKLVELVKRL---GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGE-VDVLVGVAS 385 (1176)
T ss_pred cHHHHHHHHHHhc---CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCC-CCEEEEecC
Confidence 6788888887654 4689999998776 9999999999999999999999 23469999995 7777776
Q ss_pred -ccccccCCCCCC-CCEEEEecCCC------CchhHHHHHHhhhcc
Q psy1089 300 -TRAGGQGLNLTA-ADTCILYDSDW------NPQVDIQAEARCHRI 337 (404)
Q Consensus 300 -~~a~g~GlnL~~-a~~VI~~d~~w------np~~~~Qa~gR~~R~ 337 (404)
++++++|||++. ..+||||+.|- ....+.++++|+-.+
T Consensus 386 ~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 386 YYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred CCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 799999999998 89999999998 667788999998644
No 108
>KOG0352|consensus
Probab=98.41 E-value=6.8e-07 Score=88.04 Aligned_cols=103 Identities=14% Similarity=0.181 Sum_probs=95.6
Q ss_pred eEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEecCCC
Q psy1089 243 KTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDW 322 (404)
Q Consensus 243 KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~d~~w 322 (404)
--||||.....++.++-.|...|++...+|.++...+|..+-+.|.+++ +. +|+.|-+.|.|+|-+....||+++++-
T Consensus 257 CGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~-~P-vI~AT~SFGMGVDKp~VRFViHW~~~q 334 (641)
T KOG0352|consen 257 CGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNE-IP-VIAATVSFGMGVDKPDVRFVIHWSPSQ 334 (641)
T ss_pred ceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCC-CC-EEEEEeccccccCCcceeEEEecCchh
Confidence 4689999999999999999999999999999999999999999999986 44 567779999999999999999999999
Q ss_pred CchhHHHHHHhhhccCCCCcEEEEE
Q psy1089 323 NPQVDIQAEARCHRIGQTKPVCIYR 347 (404)
Q Consensus 323 np~~~~Qa~gR~~R~Gq~~~V~Vy~ 347 (404)
|-.-|.|-.||+||.|-..-++.|+
T Consensus 335 n~AgYYQESGRAGRDGk~SyCRLYY 359 (641)
T KOG0352|consen 335 NLAGYYQESGRAGRDGKRSYCRLYY 359 (641)
T ss_pred hhHHHHHhccccccCCCccceeeee
Confidence 9999999999999999888888875
No 109
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=98.40 E-value=1.2e-06 Score=94.37 Aligned_cols=126 Identities=15% Similarity=0.093 Sum_probs=103.9
Q ss_pred HHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcC-CceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccC
Q psy1089 228 IVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLEN-YNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQG 306 (404)
Q Consensus 228 ~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~g-i~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~G 306 (404)
..+.+.+.++.+....+|||++...+.+.+...|+..+ .++..-||+.+.+.|..+-++|++|. .++ +++|.+...|
T Consensus 240 ~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~-lra-vV~TSSLELG 317 (814)
T COG1201 240 AALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGE-LKA-VVATSSLELG 317 (814)
T ss_pred HHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCC-ceE-EEEccchhhc
Confidence 44556666666667799999999999999999998876 78888999999999999999999996 554 5667889999
Q ss_pred CCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHH
Q psy1089 307 LNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHL 358 (404)
Q Consensus 307 lnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i 358 (404)
||.-..+.||.+..|-.-....||+||+++. -..+--.++++.+ .++.+
T Consensus 318 IDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr--~~~~Skg~ii~~~-r~dll 366 (814)
T COG1201 318 IDIGDIDLVIQLGSPKSVNRFLQRIGRAGHR--LGEVSKGIIIAED-RDDLL 366 (814)
T ss_pred cccCCceEEEEeCCcHHHHHHhHhccccccc--cCCcccEEEEecC-HHHHH
Confidence 9999999999999999999999999999754 2344556666666 44433
No 110
>PF13871 Helicase_C_4: Helicase_C-like
Probab=98.27 E-value=3.2e-06 Score=80.69 Aligned_cols=96 Identities=21% Similarity=0.215 Sum_probs=76.0
Q ss_pred HHHHHHhCCCCceEEEeeccccccCCCCCCC--------CEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCC
Q psy1089 282 DAVQQFNGSTEWGVFLLSTRAGGQGLNLTAA--------DTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHST 353 (404)
Q Consensus 282 ~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a--------~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~T 353 (404)
...+.|++|. ..|+|+| ++|++||+|++- ...|.+++||+....+|-.||+||.||..+..+..+++.-.
T Consensus 52 ~e~~~F~~g~-k~v~iis-~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~ 129 (278)
T PF13871_consen 52 AEKQAFMDGE-KDVAIIS-DAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLP 129 (278)
T ss_pred HHHHHHhCCC-ceEEEEe-cccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCH
Confidence 5677999995 6777776 999999999742 33588999999999999999999999998755556666667
Q ss_pred HHHHHHHHHhcCCccccchhhhcccc
Q psy1089 354 YQVHLFTIDSSGSVSWSSQSVKEKLP 379 (404)
Q Consensus 354 iEe~i~~~~~~K~~~~~~~~~~~~l~ 379 (404)
.|.+......+|-..+.+......-.
T Consensus 130 gE~Rfas~va~rL~sLgAlt~gdr~~ 155 (278)
T PF13871_consen 130 GERRFASTVARRLESLGALTRGDRRA 155 (278)
T ss_pred HHHHHHHHHHHHHhhccccccCcccc
Confidence 89999999888866666665555444
No 111
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=98.20 E-value=6.8e-06 Score=93.11 Aligned_cols=90 Identities=13% Similarity=0.130 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHhhhCCCeEEEEecch---HHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEee---
Q psy1089 226 KMIVLNQLLHKLKQTNHKTLVFSTMV---KVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLS--- 299 (404)
Q Consensus 226 Kl~~L~~ll~~l~~~~~KvlIFs~~~---~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis--- 299 (404)
+...|.+++..+ +.++|||++.. ..++.|...|...|+++..+||+++ +..+++|.+|. +.+|+.+
T Consensus 314 ~~~~L~~ll~~l---~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~~l~~Fr~G~-~~vLVata~~ 385 (1171)
T TIGR01054 314 LKETLLEIVKKL---GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KEDYEKFAEGE-IDVLIGVASY 385 (1171)
T ss_pred HHHHHHHHHHHc---CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HHHHHHHHcCC-CCEEEEeccc
Confidence 355666766543 56899999998 8999999999999999999999986 37899999995 7777776
Q ss_pred ccccccCCCCCC-CCEEEEecCCCC
Q psy1089 300 TRAGGQGLNLTA-ADTCILYDSDWN 323 (404)
Q Consensus 300 ~~a~g~GlnL~~-a~~VI~~d~~wn 323 (404)
++++++|||++. .++|||||+|-.
T Consensus 386 tdv~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 386 YGTLVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred cCcccccCCCCccccEEEEECCCCE
Confidence 689999999998 899999998843
No 112
>PRK14701 reverse gyrase; Provisional
Probab=98.18 E-value=6.1e-06 Score=95.75 Aligned_cols=104 Identities=13% Similarity=0.167 Sum_probs=84.9
Q ss_pred HHHHHHHHHhhhCCCeEEEEecchHH---HHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeec---c
Q psy1089 228 IVLNQLLHKLKQTNHKTLVFSTMVKV---LNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLST---R 301 (404)
Q Consensus 228 ~~L~~ll~~l~~~~~KvlIFs~~~~~---l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~---~ 301 (404)
..|.+++..+ +..+||||+.... ++.+...|...|+++..+||+ |..++++|.++. +.||+.+. +
T Consensus 320 ~~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G~-~~VLVaT~s~~g 390 (1638)
T PRK14701 320 EHVRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEEGE-IDYLIGVATYYG 390 (1638)
T ss_pred HHHHHHHHhC---CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHcCC-CCEEEEecCCCC
Confidence 4566666543 5789999998764 589999999999999999994 899999999995 66666653 6
Q ss_pred ccccCCCCCC-CCEEEEecCCC---CchhHHHHH-------------HhhhccCCC
Q psy1089 302 AGGQGLNLTA-ADTCILYDSDW---NPQVDIQAE-------------ARCHRIGQT 340 (404)
Q Consensus 302 a~g~GlnL~~-a~~VI~~d~~w---np~~~~Qa~-------------gR~~R~Gq~ 340 (404)
.+++|||++. ..+|||+|.|- +...|.|.. ||++|.|..
T Consensus 391 vaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 391 TLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred eeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCc
Confidence 8999999997 99999999998 666555555 999998864
No 113
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.17 E-value=2e-05 Score=84.91 Aligned_cols=134 Identities=16% Similarity=0.180 Sum_probs=106.9
Q ss_pred ccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeec
Q psy1089 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLST 300 (404)
Q Consensus 221 ~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~ 300 (404)
.....|+.++.+-+..+.+.|..|||.|.+....+.|...|...|+++..++.... +++..|=. +.|. ...+.++|
T Consensus 406 ~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~--e~EA~IIa-~AG~-~GaVTIAT 481 (925)
T PRK12903 406 GTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN--AREAEIIA-KAGQ-KGAITIAT 481 (925)
T ss_pred EcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch--hhHHHHHH-hCCC-CCeEEEec
Confidence 34568999999988888889999999999999999999999999999999998644 33333322 3443 45578889
Q ss_pred cccccCCCCCCC--------CEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHh
Q psy1089 301 RAGGQGLNLTAA--------DTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDS 363 (404)
Q Consensus 301 ~a~g~GlnL~~a--------~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~ 363 (404)
..+|+|.|+.-. =|||..+.+-+...+.|..||+||.|.......|- |+|+.++.+-.
T Consensus 482 NMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~l-----SLeD~L~r~f~ 547 (925)
T PRK12903 482 NMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFI-----SLDDQLFRRFS 547 (925)
T ss_pred ccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEE-----ecchHHHHHhC
Confidence 999999998633 39999999999999999999999999887665553 45666665533
No 114
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.15 E-value=1.5e-05 Score=83.06 Aligned_cols=93 Identities=17% Similarity=0.168 Sum_probs=72.3
Q ss_pred HHHHHHHHHhc--CCceEeccCCcCHHHH--HHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEecCC--CC----
Q psy1089 254 LNFIEELCVLE--NYNYYRLHGSIRNEER--NDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSD--WN---- 323 (404)
Q Consensus 254 l~~L~~~L~~~--gi~~~~i~G~~~~~~R--~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~d~~--wn---- 323 (404)
.+.+++.|... +.++.++|+.++..++ +++++.|.+++ .. +|++|+..+.|+|++.++.|+++|.+ .+
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~-~~-ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ 348 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGK-AD-ILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDF 348 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCC-CC-EEEeCcccccCCCCCcccEEEEEcCcccccCccc
Confidence 46777777654 7899999999887665 89999999984 33 67788999999999999999766544 23
Q ss_pred ------chhHHHHHHhhhccCCCCcEEEEEE
Q psy1089 324 ------PQVDIQAEARCHRIGQTKPVCIYRL 348 (404)
Q Consensus 324 ------p~~~~Qa~gR~~R~Gq~~~V~Vy~L 348 (404)
...+.|+.||++|.+....|-|...
T Consensus 349 ra~E~~~~ll~q~~GRagR~~~~g~viiqt~ 379 (505)
T TIGR00595 349 RAAERGFQLLTQVAGRAGRAEDPGQVIIQTY 379 (505)
T ss_pred chHHHHHHHHHHHHhccCCCCCCCEEEEEeC
Confidence 2457899999999887776665443
No 115
>KOG0953|consensus
Probab=98.15 E-value=1.1e-05 Score=82.19 Aligned_cols=115 Identities=23% Similarity=0.238 Sum_probs=83.9
Q ss_pred cHHHHHHHHHHHh--hhCCCeEEEEecchHHHHHHHHHHHhcCCc-eEeccCCcCHHHHHHHHHHHhCCCCceEEEeecc
Q psy1089 225 GKMIVLNQLLHKL--KQTNHKTLVFSTMVKVLNFIEELCVLENYN-YYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTR 301 (404)
Q Consensus 225 ~Kl~~L~~ll~~l--~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~-~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~ 301 (404)
+.+.+...++..+ ...|.-++-||. +.+-.+...+...|.. ++.|+|+.|++.|.+-...||+..+..-+|++++
T Consensus 340 ~pL~v~~~~~~sl~nlk~GDCvV~FSk--k~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsD 417 (700)
T KOG0953|consen 340 SPLVVEETALGSLSNLKPGDCVVAFSK--KDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASD 417 (700)
T ss_pred CcceehhhhhhhhccCCCCCeEEEeeh--hhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeec
Confidence 3444444455544 347888888885 4444556666667766 9999999999999999999999764445666779
Q ss_pred ccccCCCCCCCCEEEEecCC---------CCchhHHHHHHhhhccCCCCc
Q psy1089 302 AGGQGLNLTAADTCILYDSD---------WNPQVDIQAEARCHRIGQTKP 342 (404)
Q Consensus 302 a~g~GlnL~~a~~VI~~d~~---------wnp~~~~Qa~gR~~R~Gq~~~ 342 (404)
|.|.||||. ...|||++.- -....-.|--||+||.|.+-+
T Consensus 418 AIGMGLNL~-IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~ 466 (700)
T KOG0953|consen 418 AIGMGLNLN-IRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYP 466 (700)
T ss_pred ccccccccc-eeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCc
Confidence 999999985 5678888754 223344599999999987643
No 116
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.09 E-value=4.8e-05 Score=80.84 Aligned_cols=166 Identities=15% Similarity=0.145 Sum_probs=120.9
Q ss_pred HHHHHHHhCCCCccccCCcccCCCcccccccccccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCc
Q psy1089 188 TMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYN 267 (404)
Q Consensus 188 l~~Lr~ic~hP~L~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~ 267 (404)
...++++-+-+...-+...+.- ..-..+........|+.++.+-+..+.+.|..|||.+.+...-+.|...|...|++
T Consensus 376 ~~Ef~~iY~l~Vv~IPtnkp~~--R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~ 453 (764)
T PRK12326 376 GEQLRQFYDLGVSVIPPNKPNI--REDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVP 453 (764)
T ss_pred HHHHHHHhCCcEEECCCCCCce--eecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCc
Confidence 4567777776655444222111 00011222334567999999988888889999999999999999999999999999
Q ss_pred eEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCC---------------CCCEEEEecCCCCchhHHHHHH
Q psy1089 268 YYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLT---------------AADTCILYDSDWNPQVDIQAEA 332 (404)
Q Consensus 268 ~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~---------------~a~~VI~~d~~wnp~~~~Qa~g 332 (404)
+..++......+ ..+|.+- |. ...+.++|..+|+|.|+. +.=|||-.+.+-+...+.|..|
T Consensus 454 h~vLNAk~~~~E-A~IIa~A--G~-~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrG 529 (764)
T PRK12326 454 AVVLNAKNDAEE-ARIIAEA--GK-YGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRG 529 (764)
T ss_pred ceeeccCchHhH-HHHHHhc--CC-CCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhc
Confidence 999998654332 3344332 22 344788999999999875 4558999999999999999999
Q ss_pred hhhccCCCCcEEEEEEEeCCCHHHHHHHHHhc
Q psy1089 333 RCHRIGQTKPVCIYRLVSHSTYQVHLFTIDSS 364 (404)
Q Consensus 333 R~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~~ 364 (404)
|++|.|.......|- |+|+.++.+-..
T Consensus 530 RaGRQGDpGss~f~l-----SleDdl~~~f~~ 556 (764)
T PRK12326 530 RAGRQGDPGSSVFFV-----SLEDDVVAANLA 556 (764)
T ss_pred ccccCCCCCceeEEE-----EcchhHHHhcCc
Confidence 999999887666553 577777766543
No 117
>PRK05580 primosome assembly protein PriA; Validated
Probab=97.99 E-value=8.6e-05 Score=80.22 Aligned_cols=94 Identities=17% Similarity=0.139 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhc--CCceEeccCCcC--HHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEecCC--CCc--
Q psy1089 253 VLNFIEELCVLE--NYNYYRLHGSIR--NEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSD--WNP-- 324 (404)
Q Consensus 253 ~l~~L~~~L~~~--gi~~~~i~G~~~--~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~d~~--wnp-- 324 (404)
-.+.+++.|... +.++.++||.+. ..+++++++.|.+++ .. +|++|+..+.|+|+++++.|+++|.+ -+.
T Consensus 438 G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~-~~-ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pd 515 (679)
T PRK05580 438 GTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGE-AD-ILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPD 515 (679)
T ss_pred cHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCC-CC-EEEEChhhccCCCCCCcCEEEEEcCchhccCCc
Confidence 355777777654 789999999886 467999999999985 33 66778999999999999999777654 222
Q ss_pred --------hhHHHHHHhhhccCCCCcEEEEEE
Q psy1089 325 --------QVDIQAEARCHRIGQTKPVCIYRL 348 (404)
Q Consensus 325 --------~~~~Qa~gR~~R~Gq~~~V~Vy~L 348 (404)
..+.|+.||++|.|....|.+...
T Consensus 516 fra~Er~~~~l~q~~GRagR~~~~g~viiqT~ 547 (679)
T PRK05580 516 FRASERTFQLLTQVAGRAGRAEKPGEVLIQTY 547 (679)
T ss_pred cchHHHHHHHHHHHHhhccCCCCCCEEEEEeC
Confidence 467899999999887777766543
No 118
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=97.88 E-value=0.0002 Score=72.98 Aligned_cols=135 Identities=19% Similarity=0.178 Sum_probs=108.6
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecccc
Q psy1089 224 SGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAG 303 (404)
Q Consensus 224 S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~ 303 (404)
.+.+.-|..-++...+.+++++|-+-.+++.+-|.++|...|+++..+|+....-+|.+++.+.+.|. .. +|+.....
T Consensus 429 ~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~-~D-vLVGINLL 506 (663)
T COG0556 429 KGQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGE-FD-VLVGINLL 506 (663)
T ss_pred CCcHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCC-cc-EEEeehhh
Confidence 44555555555555678899999999999999999999999999999999999999999999999995 33 56667899
Q ss_pred ccCCCCCCCCEEEEecCC-----CCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHH
Q psy1089 304 GQGLNLTAADTCILYDSD-----WNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTI 361 (404)
Q Consensus 304 g~GlnL~~a~~VI~~d~~-----wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~ 361 (404)
-+|||++.++.|.++|-+ -+....+|-+||+.|--. ..|-.|-=...+|+++.|-+-
T Consensus 507 REGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~-GkvIlYAD~iT~sM~~Ai~ET 568 (663)
T COG0556 507 REGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVN-GKVILYADKITDSMQKAIDET 568 (663)
T ss_pred hccCCCcceeEEEEeecCccccccccchHHHHHHHHhhccC-CeEEEEchhhhHHHHHHHHHH
Confidence 999999999999999855 356678999999999643 346666555556666555443
No 119
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.85 E-value=3.6e-05 Score=83.90 Aligned_cols=58 Identities=12% Similarity=0.149 Sum_probs=41.3
Q ss_pred CEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHhcCCccccchh
Q psy1089 313 DTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDSSGSVSWSSQS 373 (404)
Q Consensus 313 ~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~~K~~~~~~~~ 373 (404)
++||+|||.-..-..+|. -|++|.|. +++||.|+..||+||.-|...-+|+...-+..
T Consensus 478 ~~VImYEP~~sfIR~IEv-yra~r~~r--~~rVyfL~y~~S~EEq~yl~sirrEK~AFe~L 535 (814)
T TIGR00596 478 RYVIMYEPDISFIRQLEV-YKASRPLR--PLRVYFLYYGGSIEEQRYLTSLRREKDAFTKL 535 (814)
T ss_pred CEEEEECCChHHHHHHHH-HHccCCCC--CcEEEEEEECCcHHHHHHHHHHHHHHHHHHHH
Confidence 899999988666555552 13444443 38999999999999998887777665433333
No 120
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.79 E-value=0.00024 Score=77.90 Aligned_cols=132 Identities=17% Similarity=0.239 Sum_probs=105.2
Q ss_pred ccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeec
Q psy1089 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLST 300 (404)
Q Consensus 221 ~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~ 300 (404)
.....|+.++.+-+..+.+.|..|||-+.+...-+.|...|...|+++-.++...-..+- .+|..- |. ...+-++|
T Consensus 608 ~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EA-eIVA~A--G~-~GaVTIAT 683 (1112)
T PRK12901 608 KTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEA-EIVAEA--GQ-PGTVTIAT 683 (1112)
T ss_pred cCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHH-HHHHhc--CC-CCcEEEec
Confidence 345689999999999999999999999999999999999999999999988876443332 333332 21 33478889
Q ss_pred cccccCCCCC--------CCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHH
Q psy1089 301 RAGGQGLNLT--------AADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTI 361 (404)
Q Consensus 301 ~a~g~GlnL~--------~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~ 361 (404)
..+|+|.|+. +.=|||--+.+-+...+.|.-||++|.|.......|- |+|+.++.+
T Consensus 684 NMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~l-----SLEDdLmr~ 747 (1112)
T PRK12901 684 NMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYV-----SLEDNLMRL 747 (1112)
T ss_pred cCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEE-----EcccHHHHh
Confidence 9999999975 6679999999999999999999999999887655542 455555544
No 121
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=97.77 E-value=0.00015 Score=79.12 Aligned_cols=132 Identities=16% Similarity=0.178 Sum_probs=103.2
Q ss_pred HHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhC--CCCceEEEeeccccccCCC
Q psy1089 231 NQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG--STEWGVFLLSTRAGGQGLN 308 (404)
Q Consensus 231 ~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~--~~~~~vlLis~~a~g~Gln 308 (404)
...+..-...+.|++|-++.......+...|+..+.+++.+||.....+|.+.++...+ ..+...++++|++.-.|+|
T Consensus 430 ~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvD 509 (733)
T COG1203 430 IELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVD 509 (733)
T ss_pred hhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEec
Confidence 33344445678999999999999999999999888789999999999999998886553 1224458899999999999
Q ss_pred CCCCCEEEEecCCCCchhHHHHHHhhhccC--CCCcEEEEEEEeCCCHHHHHHHHHhcC
Q psy1089 309 LTAADTCILYDSDWNPQVDIQAEARCHRIG--QTKPVCIYRLVSHSTYQVHLFTIDSSG 365 (404)
Q Consensus 309 L~~a~~VI~~d~~wnp~~~~Qa~gR~~R~G--q~~~V~Vy~Li~~~TiEe~i~~~~~~K 365 (404)
+. .+.+| -|+. -....+||.||++|-| ....+.||...-.+..+.+.++....+
T Consensus 510 id-fd~mI-Te~a-PidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 565 (733)
T COG1203 510 ID-FDVLI-TELA-PIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYEKLEKK 565 (733)
T ss_pred cc-cCeee-ecCC-CHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhhcchhh
Confidence 87 44433 3322 3446789999999999 556688888888888888888876654
No 122
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=97.77 E-value=0.00023 Score=77.63 Aligned_cols=131 Identities=14% Similarity=0.229 Sum_probs=103.9
Q ss_pred CCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccc
Q psy1089 223 SSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRA 302 (404)
Q Consensus 223 ~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a 302 (404)
...|+.++.+-+..+.+.|..|||-|.+...-+.|...|...|+++..++......+- .+|.. .|. ...+.++|..
T Consensus 550 ~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~~~Ea-~iia~--AG~-~g~VTIATNm 625 (970)
T PRK12899 550 EREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNHAQEA-EIIAG--AGK-LGAVTVATNM 625 (970)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchhhhHH-HHHHh--cCC-CCcEEEeecc
Confidence 3589999998888888899999999999999999999999999999999886432222 33332 232 3457889999
Q ss_pred cccCCCCC--------CCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHH
Q psy1089 303 GGQGLNLT--------AADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTID 362 (404)
Q Consensus 303 ~g~GlnL~--------~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~ 362 (404)
+|+|.|+. +.=|||..+.+-+...+.|..||++|.|.......|- |+|+.++.+-
T Consensus 626 AGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~l-----SlEDdL~~~f 688 (970)
T PRK12899 626 AGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFL-----SFEDRLMRLF 688 (970)
T ss_pred ccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEE-----EcchHHHHHh
Confidence 99998873 4568999999999999999999999999887655542 4566666553
No 123
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=97.76 E-value=0.00028 Score=76.80 Aligned_cols=162 Identities=14% Similarity=0.191 Sum_probs=116.5
Q ss_pred HHHHHHhCCCCccccCCcccCCCcccccccccccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCce
Q psy1089 189 MVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNY 268 (404)
Q Consensus 189 ~~Lr~ic~hP~L~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~ 268 (404)
..++++-+-+...-+...+.-. .-..+........|+.++.+-+..+.+.|..|||-+.+...-+.|...|...|+++
T Consensus 399 ~Ef~~iY~l~Vv~IPTnkP~~R--~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h 476 (913)
T PRK13103 399 FEFRQIYGLDVVVIPPNKPLAR--KDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEH 476 (913)
T ss_pred HHHHHHhCCCEEECCCCCCccc--ccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcH
Confidence 4566666666554443221110 00111223445689999999999999999999999999999999999999999999
Q ss_pred EeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCC-------------------------------------C
Q psy1089 269 YRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLT-------------------------------------A 311 (404)
Q Consensus 269 ~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~-------------------------------------~ 311 (404)
-.++...... -..++. +.|. ...+.++|..+|+|.|+. +
T Consensus 477 ~VLNAk~~~~-EA~IIa--~AG~-~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~G 552 (913)
T PRK13103 477 KVLNAKYHEK-EAEIIA--QAGR-PGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAG 552 (913)
T ss_pred HHhccccchh-HHHHHH--cCCC-CCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcC
Confidence 8888764422 223333 3332 345788899999999974 4
Q ss_pred CCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHH
Q psy1089 312 ADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTI 361 (404)
Q Consensus 312 a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~ 361 (404)
.=|||--+.+-|...+.|.-||++|.|.......|- |+|+.++.+
T Consensus 553 GLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~l-----SlED~Lmr~ 597 (913)
T PRK13103 553 GLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYL-----SLEDSLMRI 597 (913)
T ss_pred CCEEEeeccCchHHHHHHhccccccCCCCCceEEEE-----EcCcHHHHh
Confidence 558999999999999999999999999887665553 345555554
No 124
>KOG0353|consensus
Probab=97.69 E-value=0.00013 Score=71.18 Aligned_cols=119 Identities=13% Similarity=0.111 Sum_probs=100.4
Q ss_pred HHHHHHHHHhhh--CCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecccccc
Q psy1089 228 IVLNQLLHKLKQ--TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQ 305 (404)
Q Consensus 228 ~~L~~ll~~l~~--~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~ 305 (404)
..+.++..-+.. .|..-||||-+....+.+...|+..|+....+|..+.+++|..+-..|-.+. +.| ++.|-+.|.
T Consensus 302 d~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~e-iqv-ivatvafgm 379 (695)
T KOG0353|consen 302 DCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGE-IQV-IVATVAFGM 379 (695)
T ss_pred HHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccc-eEE-EEEEeeecc
Confidence 344444443322 4788899999999999999999999999999999999999999998998884 665 455688999
Q ss_pred CCCCCCCCEEEEecCCCCchhHHH-------------------------------------------HHHhhhccCCCCc
Q psy1089 306 GLNLTAADTCILYDSDWNPQVDIQ-------------------------------------------AEARCHRIGQTKP 342 (404)
Q Consensus 306 GlnL~~a~~VI~~d~~wnp~~~~Q-------------------------------------------a~gR~~R~Gq~~~ 342 (404)
||+-+....||+..+|-+-..|.| ..||+||.|++.+
T Consensus 380 gidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~ 459 (695)
T KOG0353|consen 380 GIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKAD 459 (695)
T ss_pred cCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCccc
Confidence 999999999999999999999999 5688999999988
Q ss_pred EEEEEE
Q psy1089 343 VCIYRL 348 (404)
Q Consensus 343 V~Vy~L 348 (404)
+-.|+=
T Consensus 460 cilyy~ 465 (695)
T KOG0353|consen 460 CILYYG 465 (695)
T ss_pred EEEEec
Confidence 877654
No 125
>KOG0329|consensus
Probab=97.64 E-value=4.4e-05 Score=70.93 Aligned_cols=112 Identities=20% Similarity=0.219 Sum_probs=76.1
Q ss_pred HHHHhCCCCccccCCcccCCCcccccccccccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEe
Q psy1089 191 LRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYR 270 (404)
Q Consensus 191 Lr~ic~hP~L~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~ 270 (404)
.++++.+|.-+..+...+..-....+.+.-.....|-..+.++|..+. =..|+||..+...+
T Consensus 235 C~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~Le--FNQVvIFvKsv~Rl---------------- 296 (387)
T KOG0329|consen 235 CHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLLDVLE--FNQVVIFVKSVQRL---------------- 296 (387)
T ss_pred HHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhh--hcceeEeeehhhhh----------------
Confidence 456666776555432222211222222333445667777777777552 34789998655431
Q ss_pred ccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCC
Q psy1089 271 LHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTK 341 (404)
Q Consensus 271 i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~ 341 (404)
. |+ .+ +++++..|+|+++...|.+|+||+|-++..|.++.+|++|.|-+.
T Consensus 297 --------------~-f~----kr--~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkg 346 (387)
T KOG0329|consen 297 --------------S-FQ----KR--LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKG 346 (387)
T ss_pred --------------h-hh----hh--hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhcccccc
Confidence 0 31 12 667899999999999999999999999999999999999999764
No 126
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=97.51 E-value=0.00045 Score=76.18 Aligned_cols=133 Identities=19% Similarity=0.188 Sum_probs=108.4
Q ss_pred cHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHH----HHHHhcC----CceEeccCCcCHHHHHHHHHHHhCCCCceEE
Q psy1089 225 GKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIE----ELCVLEN----YNYYRLHGSIRNEERNDAVQQFNGSTEWGVF 296 (404)
Q Consensus 225 ~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~----~~L~~~g----i~~~~i~G~~~~~~R~~~i~~F~~~~~~~vl 296 (404)
++...+..++..+..++-++|+|+.+...++.+. ..+...+ ..+..++|++...+|.++...|+.+. . ..
T Consensus 290 s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~-~-~~ 367 (851)
T COG1205 290 SALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGE-L-LG 367 (851)
T ss_pred chHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCC-c-cE
Confidence 6788888888888889999999999999999886 4444444 56778899999999999999999996 2 36
Q ss_pred EeeccccccCCCCCCCCEEEEecCCC-CchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHH
Q psy1089 297 LLSTRAGGQGLNLTAADTCILYDSDW-NPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTI 361 (404)
Q Consensus 297 Lis~~a~g~GlnL~~a~~VI~~d~~w-np~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~ 361 (404)
++++.+.-.|+++.+.+.||....|- .-..+.|+.||++|.||.- .++...-.+.++..+...
T Consensus 368 ~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~--l~~~v~~~~~~d~yy~~~ 431 (851)
T COG1205 368 VIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQES--LVLVVLRSDPLDSYYLRH 431 (851)
T ss_pred EecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCc--eEEEEeCCCccchhhhhC
Confidence 78899999999999999999999998 6789999999999999543 333333366677665544
No 127
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=97.51 E-value=0.00072 Score=71.11 Aligned_cols=117 Identities=12% Similarity=0.158 Sum_probs=85.9
Q ss_pred cHHHHHHHHHHHhhhCCCeEEEEecchHHHH--------HHHHHHH--hcCCceEeccCCcCHHHHHHHHHHHhCCCCce
Q psy1089 225 GKMIVLNQLLHKLKQTNHKTLVFSTMVKVLN--------FIEELCV--LENYNYYRLHGSIRNEERNDAVQQFNGSTEWG 294 (404)
Q Consensus 225 ~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~--------~L~~~L~--~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~ 294 (404)
.+...+.+.+..-...|.++-+.|.-.+.-+ .+...|+ ..++.+..+||.++..++++++.+|+++. +.
T Consensus 457 ~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e-~~ 535 (677)
T COG1200 457 ERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGE-ID 535 (677)
T ss_pred ccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCC-Cc
Confidence 3444444455444458899998887655432 3333444 23566889999999999999999999985 33
Q ss_pred EEEeeccccccCCCCCCCCEEEEecCC-CCchhHHHHHHhhhccCCCCcE
Q psy1089 295 VFLLSTRAGGQGLNLTAADTCILYDSD-WNPQVDIQAEARCHRIGQTKPV 343 (404)
Q Consensus 295 vlLis~~a~g~GlnL~~a~~VI~~d~~-wnp~~~~Qa~gR~~R~Gq~~~V 343 (404)
+|++|.+..+|+|+++|+.+|+.+.. +-.+..=|--||+||-+....|
T Consensus 536 -ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC 584 (677)
T COG1200 536 -ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYC 584 (677)
T ss_pred -EEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEE
Confidence 78888999999999999999998754 4455566888999997655433
No 128
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=97.34 E-value=0.0034 Score=61.07 Aligned_cols=121 Identities=15% Similarity=0.192 Sum_probs=93.2
Q ss_pred HHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHh-cCC-ceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccC
Q psy1089 229 VLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVL-ENY-NYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQG 306 (404)
Q Consensus 229 ~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~-~gi-~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~G 306 (404)
.|...|+.....|..++||.....+++-....|+. .+. .+..+++.. ..|.+.+..|++|. .-+|++|....+|
T Consensus 293 kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G~--~~lLiTTTILERG 368 (441)
T COG4098 293 KLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDGK--ITLLITTTILERG 368 (441)
T ss_pred HHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHcCc--eEEEEEeehhhcc
Confidence 56677777778899999999999999999999943 222 224455443 36999999999994 4478889999999
Q ss_pred CCCCCCCEEEEecCC--CCchhHHHHHHhhhccCCCCcEEEEEEEeCCC
Q psy1089 307 LNLTAADTCILYDSD--WNPQVDIQAEARCHRIGQTKPVCIYRLVSHST 353 (404)
Q Consensus 307 lnL~~a~~VI~~d~~--wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~T 353 (404)
.++++.+..++-... +..+...|--||+||--...+-.|+.|.-.-|
T Consensus 369 VTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~s 417 (441)
T COG4098 369 VTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKS 417 (441)
T ss_pred cccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccch
Confidence 999999998887655 77888899999999976555555655554443
No 129
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=97.23 E-value=0.0048 Score=67.15 Aligned_cols=117 Identities=15% Similarity=0.138 Sum_probs=80.0
Q ss_pred HHHHHHHhCCCCccccCCcccCCCccccccccc-ccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCC
Q psy1089 188 TMVLRNIISHPYLINKPYRIVDGKKEMVCDENI-VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENY 266 (404)
Q Consensus 188 l~~Lr~ic~hP~L~~~~~~~~~~~~~~~~~~~~-~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi 266 (404)
...++++-+-+...-+...+.- ....+..+ .....|+.++.+-+....+.|..|||-|.+...-+.|...|...|+
T Consensus 373 ~~Ef~~iY~l~vv~IPtnkp~~---R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi 449 (870)
T CHL00122 373 ELEFEKIYNLEVVCIPTHRPML---RKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRL 449 (870)
T ss_pred HHHHHHHhCCCEEECCCCCCcc---ceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCC
Confidence 3456666666655544322211 11112222 2345699988888888888999999999999999999999999999
Q ss_pred ceEeccCCcCH-HHHHHHHHHHhCCCCceEEEeeccccccCCCCC
Q psy1089 267 NYYRLHGSIRN-EERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLT 310 (404)
Q Consensus 267 ~~~~i~G~~~~-~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~ 310 (404)
++..++..... +.=..+|.+ .|. ...+.++|..+|+|.|+.
T Consensus 450 ~h~vLNAk~~~~~~EA~IIA~--AG~-~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 450 PHQLLNAKPENVRRESEIVAQ--AGR-KGSITIATNMAGRGTDII 491 (870)
T ss_pred ccceeeCCCccchhHHHHHHh--cCC-CCcEEEeccccCCCcCee
Confidence 99999986422 223345544 332 345788999999998753
No 130
>KOG4150|consensus
Probab=97.22 E-value=0.0026 Score=65.34 Aligned_cols=114 Identities=16% Similarity=0.152 Sum_probs=94.5
Q ss_pred CCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHH----hcCC----ceEeccCCcCHHHHHHHHHHHhCCCCce
Q psy1089 223 SSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCV----LENY----NYYRLHGSIRNEERNDAVQQFNGSTEWG 294 (404)
Q Consensus 223 ~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~----~~gi----~~~~i~G~~~~~~R~~~i~~F~~~~~~~ 294 (404)
.+.|+.....++.++...|-++|-||...+.++++....+ .-|- .+..+.|+-+.++|.++-...-.|. -
T Consensus 507 ~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~--L 584 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGK--L 584 (1034)
T ss_pred hhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCe--e
Confidence 3668888888888888899999999999998887654432 2222 2456789999999999988877764 3
Q ss_pred EEEeeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccC
Q psy1089 295 VFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIG 338 (404)
Q Consensus 295 vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~G 338 (404)
.-+++|.|...|||+-..+.|+.+..|.+-+...|..||+||-.
T Consensus 585 ~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRN 628 (1034)
T KOG4150|consen 585 CGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRN 628 (1034)
T ss_pred eEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccC
Confidence 45788999999999999999999999999999999999999865
No 131
>COG1204 Superfamily II helicase [General function prediction only]
Probab=97.02 E-value=0.0055 Score=66.94 Aligned_cols=113 Identities=21% Similarity=0.153 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhc-------------------------------------CCce
Q psy1089 226 KMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLE-------------------------------------NYNY 268 (404)
Q Consensus 226 Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~-------------------------------------gi~~ 268 (404)
+...+.+++....+.+..++||+++.+.....++.|... -..+
T Consensus 238 ~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~Gv 317 (766)
T COG1204 238 IDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGV 317 (766)
T ss_pred chHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCc
Confidence 345666677777788999999999998877777766520 0113
Q ss_pred EeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEE----ec-----CCCCchhHHHHHHhhhccCC
Q psy1089 269 YRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCIL----YD-----SDWNPQVDIQAEARCHRIGQ 339 (404)
Q Consensus 269 ~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~----~d-----~~wnp~~~~Qa~gR~~R~Gq 339 (404)
..-|.+++.+.|+-+-+.|+.+. ++ +|++|.+.+.|+||++-..||- || -+-+..++.|-.||+||.|=
T Consensus 318 afHhAGL~~~~R~~vE~~Fr~g~-ik-Vlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~ 395 (766)
T COG1204 318 AFHHAGLPREDRQLVEDAFRKGK-IK-VLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGY 395 (766)
T ss_pred cccccCCCHHHHHHHHHHHhcCC-ce-EEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCc
Confidence 44578899999999999999995 55 4667788899999997666553 44 33456678899999999985
Q ss_pred C
Q psy1089 340 T 340 (404)
Q Consensus 340 ~ 340 (404)
.
T Consensus 396 d 396 (766)
T COG1204 396 D 396 (766)
T ss_pred C
Confidence 4
No 132
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=96.96 E-value=0.012 Score=63.74 Aligned_cols=108 Identities=16% Similarity=0.048 Sum_probs=79.3
Q ss_pred CCeEEEEecchHHHHHHHHHHHhc-----CCceEeccCCcCHH---------------------HHHHHHHHHhCCCCce
Q psy1089 241 NHKTLVFSTMVKVLNFIEELCVLE-----NYNYYRLHGSIRNE---------------------ERNDAVQQFNGSTEWG 294 (404)
Q Consensus 241 ~~KvlIFs~~~~~l~~L~~~L~~~-----gi~~~~i~G~~~~~---------------------~R~~~i~~F~~~~~~~ 294 (404)
+.|.+|||.+...+..+...|... +...+.++|+.+.. ....++++|.+...+.
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 589999999999888888777543 34556677764433 1247899998754455
Q ss_pred EEEeeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhcc-CC-CCcEEEEEEEe
Q psy1089 295 VFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRI-GQ-TKPVCIYRLVS 350 (404)
Q Consensus 295 vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~-Gq-~~~V~Vy~Li~ 350 (404)
+ |+..+...+|.|.+.++++++.-|--+. ...|++||+.|+ +. +....|+.++.
T Consensus 594 i-lIVvdmllTGFDaP~l~tLyldKplk~h-~LlQai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 594 L-LIVVDMLLTGFDAPILNTLYLDKPLKYH-GLLQAIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred E-EEEEcccccccCCCccceEEEecccccc-HHHHHHHHhccccCCCCCCEEEEECcC
Confidence 4 5556999999999999988887766554 578999999995 43 44467777765
No 133
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=96.84 E-value=0.014 Score=64.98 Aligned_cols=115 Identities=18% Similarity=0.229 Sum_probs=87.1
Q ss_pred HHHHHhhhCCCeEEEEecchHHHHHHHHHHHhc--CCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCC
Q psy1089 232 QLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLE--NYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNL 309 (404)
Q Consensus 232 ~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~--gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL 309 (404)
.+++++. .|.+|-...+....++.+...|+.. ...+...||.|+..+-++++..|.++. .. +|++|.....|||+
T Consensus 795 AI~REl~-RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~-~d-VLv~TTIIEtGIDI 871 (1139)
T COG1197 795 AILRELL-RGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGE-YD-VLVCTTIIETGIDI 871 (1139)
T ss_pred HHHHHHh-cCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCC-CC-EEEEeeeeecCcCC
Confidence 3444544 5667776677788888888888743 446788899999999999999999995 33 67777888999999
Q ss_pred CCCCEEEEecCC-CCchhHHHHHHhhhccCCCCcEEEEEEEeC
Q psy1089 310 TAADTCILYDSD-WNPQVDIQAEARCHRIGQTKPVCIYRLVSH 351 (404)
Q Consensus 310 ~~a~~VI~~d~~-wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~ 351 (404)
+.||++|+-+-+ +-.+..-|--||+||-..+ .+.|.++-.
T Consensus 872 PnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~--AYAYfl~p~ 912 (1139)
T COG1197 872 PNANTIIIERADKFGLAQLYQLRGRVGRSNKQ--AYAYFLYPP 912 (1139)
T ss_pred CCCceEEEeccccccHHHHHHhccccCCccce--EEEEEeecC
Confidence 999999886543 4556667888999886543 566666653
No 134
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.65 E-value=0.0085 Score=53.17 Aligned_cols=80 Identities=15% Similarity=0.237 Sum_probs=54.1
Q ss_pred hhCCCeEEEEecchHHHHHHHHHHHhcC----CceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecc--ccccCCCCC-
Q psy1089 238 KQTNHKTLVFSTMVKVLNFIEELCVLEN----YNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTR--AGGQGLNLT- 310 (404)
Q Consensus 238 ~~~~~KvlIFs~~~~~l~~L~~~L~~~g----i~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~--a~g~GlnL~- 310 (404)
...+.++|||+.+-..++.+...++..+ +.+.. .+ ..++...++.|..+++ .+|+++. ...+|+|+.
T Consensus 6 ~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~-q~---~~~~~~~l~~~~~~~~--~il~~v~~g~~~EGiD~~~ 79 (167)
T PF13307_consen 6 SAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFV-QG---SKSRDELLEEFKRGEG--AILLAVAGGSFSEGIDFPG 79 (167)
T ss_dssp HCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEE-ST---CCHHHHHHHHHCCSSS--EEEEEETTSCCGSSS--EC
T ss_pred hcCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeee-cC---cchHHHHHHHHHhccC--eEEEEEecccEEEeecCCC
Confidence 3456899999999999999999987553 33322 22 3468899999999753 3555555 889999998
Q ss_pred -CCCEEEEecCCCC
Q psy1089 311 -AADTCILYDSDWN 323 (404)
Q Consensus 311 -~a~~VI~~d~~wn 323 (404)
.+..||+...|+-
T Consensus 80 ~~~r~vii~glPfp 93 (167)
T PF13307_consen 80 DLLRAVIIVGLPFP 93 (167)
T ss_dssp ESEEEEEEES----
T ss_pred chhheeeecCCCCC
Confidence 5778999988874
No 135
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=96.53 E-value=0.015 Score=62.55 Aligned_cols=106 Identities=17% Similarity=0.190 Sum_probs=85.7
Q ss_pred CeEEEEecchHHHHHHHHHHHhc-----CCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEE
Q psy1089 242 HKTLVFSTMVKVLNFIEELCVLE-----NYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCI 316 (404)
Q Consensus 242 ~KvlIFs~~~~~l~~L~~~L~~~-----gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI 316 (404)
.|+||||......+.+...|... |--+..|+|.... -+..|+.|...+..+.+.++.+...+|+|.+.+-.++
T Consensus 427 ~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~--~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlV 504 (875)
T COG4096 427 GKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQ--AQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLV 504 (875)
T ss_pred CceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchh--hHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeee
Confidence 69999999999999999998633 2335668886654 5667888887555667889999999999999999999
Q ss_pred EecCCCCchhHHHHHHhhhcc-------CCCCc-EEEEEEE
Q psy1089 317 LYDSDWNPQVDIQAEARCHRI-------GQTKP-VCIYRLV 349 (404)
Q Consensus 317 ~~d~~wnp~~~~Qa~gR~~R~-------Gq~~~-V~Vy~Li 349 (404)
++-..-+...+.|-+||.-|+ ||.|. .+|+.++
T Consensus 505 F~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~ 545 (875)
T COG4096 505 FDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFV 545 (875)
T ss_pred ehhhhhhHHHHHHHhcCccccCccccCccccceeEEEEEhh
Confidence 999999999999999999998 24343 5666554
No 136
>KOG0952|consensus
Probab=96.41 E-value=0.031 Score=61.45 Aligned_cols=119 Identities=15% Similarity=0.055 Sum_probs=85.7
Q ss_pred HHhhhCCCeEEEEecchHHHHHHHHHHHhc----CCc-------------------eEeccCCcCHHHHHHHHHHHhCCC
Q psy1089 235 HKLKQTNHKTLVFSTMVKVLNFIEELCVLE----NYN-------------------YYRLHGSIRNEERNDAVQQFNGST 291 (404)
Q Consensus 235 ~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~----gi~-------------------~~~i~G~~~~~~R~~~i~~F~~~~ 291 (404)
.+...+|+.|+||++.....-..++.|... |.. ...-|.++..++|+-.-+.|..|.
T Consensus 343 ~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~ 422 (1230)
T KOG0952|consen 343 VEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGH 422 (1230)
T ss_pred HHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCC
Confidence 344568999999999877655555555322 211 223467788889999999999995
Q ss_pred CceEEEeeccccccCCCCCCCCEEEEecCCCCchh----------HHHHHHhhhccCCCCcEEEEEEEeCCCHH
Q psy1089 292 EWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQV----------DIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355 (404)
Q Consensus 292 ~~~vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~~----------~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiE 355 (404)
++ +|++|...+.|.||++-..+|--...|++.. ..|-.||+||.+=.+.-..+-+-+.+.++
T Consensus 423 -i~-vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~ 494 (1230)
T KOG0952|consen 423 -IK-VLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLD 494 (1230)
T ss_pred -ce-EEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHH
Confidence 44 5777899999999999888888888888765 46999999999755544444444444443
No 137
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=96.40 E-value=0.023 Score=63.22 Aligned_cols=110 Identities=19% Similarity=0.243 Sum_probs=75.5
Q ss_pred HHHHHHHHhhh-CCCeEEEEecchHHHHHHHHHHHh----cCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecccc
Q psy1089 229 VLNQLLHKLKQ-TNHKTLVFSTMVKVLNFIEELCVL----ENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAG 303 (404)
Q Consensus 229 ~L~~ll~~l~~-~~~KvlIFs~~~~~l~~L~~~L~~----~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~ 303 (404)
.+.+.|..+.. .+.++|||+.+...++.+...|.. .++++. ..+.. ..|.+++++|+.++ .. +|+++++.
T Consensus 661 ~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l--~q~~~-~~r~~ll~~F~~~~-~~-iLlgt~sf 735 (850)
T TIGR01407 661 EIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVL--AQGIN-GSRAKIKKRFNNGE-KA-ILLGTSSF 735 (850)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccCceEE--ecCCC-ccHHHHHHHHHhCC-Ce-EEEEccee
Confidence 34445544433 557899999999999999998864 344432 22222 47899999999874 23 55667999
Q ss_pred ccCCCCCCCC--EEEEecCCCC-ch-----------------------------hHHHHHHhhhccCCCCcE
Q psy1089 304 GQGLNLTAAD--TCILYDSDWN-PQ-----------------------------VDIQAEARCHRIGQTKPV 343 (404)
Q Consensus 304 g~GlnL~~a~--~VI~~d~~wn-p~-----------------------------~~~Qa~gR~~R~Gq~~~V 343 (404)
.+|+|+++.. .||+.-.|+- |. ...|++||.-|-.+.+.+
T Consensus 736 ~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~ 807 (850)
T TIGR01407 736 WEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGS 807 (850)
T ss_pred ecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEE
Confidence 9999998654 5677776653 21 123888999988766554
No 138
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=96.26 E-value=0.071 Score=58.45 Aligned_cols=116 Identities=13% Similarity=0.116 Sum_probs=79.2
Q ss_pred HHHHHHhCCCCccccCCcccCCCcccccccc-cccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCc
Q psy1089 189 MVLRNIISHPYLINKPYRIVDGKKEMVCDEN-IVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYN 267 (404)
Q Consensus 189 ~~Lr~ic~hP~L~~~~~~~~~~~~~~~~~~~-~~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~ 267 (404)
..++++-+-+...-+...+.- ....+.. ......|+.++.+-+..+.+.|..|||-+.+...-+.|...|...|++
T Consensus 389 ~Ef~~iY~l~Vv~IPTnkP~~---R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~ 465 (939)
T PRK12902 389 VEFEKTYKLEVTVIPTNRPRR---RQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIP 465 (939)
T ss_pred HHHHHHhCCcEEEcCCCCCee---eecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCc
Confidence 456666666655444222111 1111111 233468999999888888889999999999999999999999999999
Q ss_pred eEeccCC-cCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCC
Q psy1089 268 YYRLHGS-IRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLT 310 (404)
Q Consensus 268 ~~~i~G~-~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~ 310 (404)
+..++.. ...+.-..+|.+ .|. ...+-++|..+|+|-|+.
T Consensus 466 h~vLNAk~~~~~~EA~IIa~--AG~-~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 466 HNLLNAKPENVEREAEIVAQ--AGR-KGAVTIATNMAGRGTDII 506 (939)
T ss_pred hheeeCCCcchHhHHHHHHh--cCC-CCcEEEeccCCCCCcCEe
Confidence 9999986 232333345544 332 344788899999997753
No 139
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=96.25 E-value=0.082 Score=53.98 Aligned_cols=127 Identities=17% Similarity=0.154 Sum_probs=97.8
Q ss_pred CcHHHHHHH-HHHHhh-h-CCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeec
Q psy1089 224 SGKMIVLNQ-LLHKLK-Q-TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLST 300 (404)
Q Consensus 224 S~Kl~~L~~-ll~~l~-~-~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~ 300 (404)
..+++...+ ++..+. . ....+|||..+--..-.|..+|+..++.++.++--++..+-.++-..|.+|. ..++|.+-
T Consensus 280 d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~-~~iLL~TE 358 (442)
T PF06862_consen 280 DARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGR-KPILLYTE 358 (442)
T ss_pred hHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCC-ceEEEEEh
Confidence 456766654 666665 2 4578999998777677789999999999999999999999999999999995 78888885
Q ss_pred cc-cccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCC----CCcEEEEEEEeC
Q psy1089 301 RA-GGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQ----TKPVCIYRLVSH 351 (404)
Q Consensus 301 ~a-~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq----~~~V~Vy~Li~~ 351 (404)
+. -=+=..+.++.+||+|.+|-+|.-|..-+.-.....+ ...++|.-|.++
T Consensus 359 R~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk 414 (442)
T PF06862_consen 359 RFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSK 414 (442)
T ss_pred HHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecH
Confidence 54 2234467899999999999999999887765554433 234566666665
No 140
>KOG0922|consensus
Probab=96.25 E-value=0.018 Score=60.49 Aligned_cols=113 Identities=25% Similarity=0.291 Sum_probs=85.9
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhc----CC----ceEeccCCcCHHHHHHHHHHHhCCC-CceEEEeeccccccCCCC
Q psy1089 239 QTNHKTLVFSTMVKVLNFIEELCVLE----NY----NYYRLHGSIRNEERNDAVQQFNGST-EWGVFLLSTRAGGQGLNL 309 (404)
Q Consensus 239 ~~~~KvlIFs~~~~~l~~L~~~L~~~----gi----~~~~i~G~~~~~~R~~~i~~F~~~~-~~~vlLis~~a~g~GlnL 309 (404)
++..-+|||-.-.+.++...+.|... +- -+..++|++|.++..++ |...+ +++-++++|..+.+.+++
T Consensus 256 E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv---F~p~p~g~RKvIlsTNIAETSlTI 332 (674)
T KOG0922|consen 256 EPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRV---FDPAPPGKRKVILSTNIAETSLTI 332 (674)
T ss_pred CCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcc---ccCCCCCcceEEEEcceeeeeEEe
Confidence 34568999999999888887777543 11 14678999999887665 55544 677789999999999999
Q ss_pred CCCCEEEEec----CCCCc-----------hhHHHHHHhhhccCCCCcEEEEEEEeCCCH
Q psy1089 310 TAADTCILYD----SDWNP-----------QVDIQAEARCHRIGQTKPVCIYRLVSHSTY 354 (404)
Q Consensus 310 ~~a~~VI~~d----~~wnp-----------~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~Ti 354 (404)
.+..+||=-. ..||| -.-.||.-|+||.|.+.+..+|||+++.-+
T Consensus 333 ~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 333 DGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAY 392 (674)
T ss_pred cceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHH
Confidence 9998887322 23443 234588888888899999999999998765
No 141
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=96.08 E-value=0.019 Score=63.08 Aligned_cols=124 Identities=19% Similarity=0.260 Sum_probs=87.3
Q ss_pred HHHHHHHHhh-hCCCeEEEEecchHHHHHHHHHHHh----cCCceEeccCCcCHHHHHHHHHHHhCCC-CceEEEeeccc
Q psy1089 229 VLNQLLHKLK-QTNHKTLVFSTMVKVLNFIEELCVL----ENYNYYRLHGSIRNEERNDAVQQFNGST-EWGVFLLSTRA 302 (404)
Q Consensus 229 ~L~~ll~~l~-~~~~KvlIFs~~~~~l~~L~~~L~~----~gi~~~~i~G~~~~~~R~~~i~~F~~~~-~~~vlLis~~a 302 (404)
.+...+.... .....+|||-.-...++...+.|.. ..+.++.++|.++.++..++ |+..+ +.+-++++|..
T Consensus 246 ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rv---F~p~~~~~RKVVlATNI 322 (845)
T COG1643 246 AIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRV---FEPAPGGKRKVVLATNI 322 (845)
T ss_pred HHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhh---cCCCCCCcceEEEEccc
Confidence 3444444443 3457899999999999988888876 45778999999999988885 45444 23438889999
Q ss_pred cccCCCCCCCCEEEEec----CCCCchhH-----------HHHHHhhhccCCCCcEEEEEEEeCCCHH
Q psy1089 303 GGQGLNLTAADTCILYD----SDWNPQVD-----------IQAEARCHRIGQTKPVCIYRLVSHSTYQ 355 (404)
Q Consensus 303 ~g~GlnL~~a~~VI~~d----~~wnp~~~-----------~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiE 355 (404)
+-++|++.+..+||--. +-+||..- ..|.=|+||.|.+.+=..|||++++.++
T Consensus 323 AETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~ 390 (845)
T COG1643 323 AETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFL 390 (845)
T ss_pred cccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHH
Confidence 99999999999888532 23333222 2344455555556677999999986554
No 142
>KOG0950|consensus
Probab=96.00 E-value=0.017 Score=62.78 Aligned_cols=99 Identities=22% Similarity=0.177 Sum_probs=70.6
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhc--------------------------------------CCceEeccCCcCHHHH
Q psy1089 239 QTNHKTLVFSTMVKVLNFIEELCVLE--------------------------------------NYNYYRLHGSIRNEER 280 (404)
Q Consensus 239 ~~~~KvlIFs~~~~~l~~L~~~L~~~--------------------------------------gi~~~~i~G~~~~~~R 280 (404)
.++.++||||..+.-.+.++..+... ...+...|.+.+.++|
T Consensus 458 ~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER 537 (1008)
T KOG0950|consen 458 PEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEER 537 (1008)
T ss_pred hcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchH
Confidence 45678999999887666554333211 1234566788899999
Q ss_pred HHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEec----CCCCchhHHHHHHhhhccCC
Q psy1089 281 NDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYD----SDWNPQVDIQAEARCHRIGQ 339 (404)
Q Consensus 281 ~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~d----~~wnp~~~~Qa~gR~~R~Gq 339 (404)
..+=..|+++- .+ +++.|...+.|.||++-.++|=.- ..-....|.|.+||++|.|=
T Consensus 538 ~~iE~afr~g~-i~-vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gi 598 (1008)
T KOG0950|consen 538 EIIEAAFREGN-IF-VLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGI 598 (1008)
T ss_pred HHHHHHHHhcC-eE-EEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhccc
Confidence 99988999984 44 455556688999999877666543 23334588999999999983
No 143
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=95.93 E-value=0.057 Score=58.69 Aligned_cols=135 Identities=15% Similarity=0.155 Sum_probs=102.2
Q ss_pred ccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeec
Q psy1089 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLST 300 (404)
Q Consensus 221 ~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~ 300 (404)
...-.|+.++.+-+......|..|||-+.+...-+.+...|...|++...++..-...+-+.+-..-. ...+-++|
T Consensus 409 ~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~EA~Iia~AG~----~gaVTiAT 484 (822)
T COG0653 409 KTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHAREAEIIAQAGQ----PGAVTIAT 484 (822)
T ss_pred cchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHHHHHHHhhcCC----CCcccccc
Confidence 44567999999999999999999999999999999999999999999988887766443333332222 23467889
Q ss_pred cccccCCCCC-CCC----------EEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHhc
Q psy1089 301 RAGGQGLNLT-AAD----------TCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDSS 364 (404)
Q Consensus 301 ~a~g~GlnL~-~a~----------~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~~ 364 (404)
..+|+|-|+. +.+ +||=-+..-+.....|--||+||.|-.. ..-+++ |+|..++.+-..
T Consensus 485 NMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG-~S~F~l----SleD~L~r~F~~ 554 (822)
T COG0653 485 NMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPG-SSRFYL----SLEDDLMRRFAS 554 (822)
T ss_pred ccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcc-hhhhhh----hhHHHHHHHhcc
Confidence 9999999986 443 5777788888888889999999999433 333333 566666666443
No 144
>KOG0951|consensus
Probab=95.90 E-value=0.041 Score=61.58 Aligned_cols=71 Identities=27% Similarity=0.400 Sum_probs=56.4
Q ss_pred CceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEE----ecCC---C---CchhHHHHHHhhh
Q psy1089 266 YNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCIL----YDSD---W---NPQVDIQAEARCH 335 (404)
Q Consensus 266 i~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~----~d~~---w---np~~~~Qa~gR~~ 335 (404)
+.+..-|.+++..+|...-+-|.++. ++ ++++|...+.|+||++-..+|- |||. | .|.+..|..||+|
T Consensus 608 ygfaIHhAGl~R~dR~~~EdLf~~g~-iq-vlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgrag 685 (1674)
T KOG0951|consen 608 YGFAIHHAGLNRKDRELVEDLFADGH-IQ-VLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAG 685 (1674)
T ss_pred ccceeeccCCCcchHHHHHHHHhcCc-ee-EEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcC
Confidence 34677789999999999999999994 44 5778899999999997766654 3332 2 3667789999999
Q ss_pred ccC
Q psy1089 336 RIG 338 (404)
Q Consensus 336 R~G 338 (404)
|.+
T Consensus 686 rp~ 688 (1674)
T KOG0951|consen 686 RPQ 688 (1674)
T ss_pred CCc
Confidence 986
No 145
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=95.79 E-value=0.093 Score=56.71 Aligned_cols=114 Identities=18% Similarity=0.172 Sum_probs=80.5
Q ss_pred HHHHHHHHHhh-hCCCeEEEEecchHHHHHHHHHHHhcCCc-eEeccCCcCHHHHHHHHHHHhCCCCceEEEeecccccc
Q psy1089 228 IVLNQLLHKLK-QTNHKTLVFSTMVKVLNFIEELCVLENYN-YYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQ 305 (404)
Q Consensus 228 ~~L~~ll~~l~-~~~~KvlIFs~~~~~l~~L~~~L~~~gi~-~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~ 305 (404)
..+...+..+. ..+.++|||..+-..+..+.+.+...... .+...|..+ +...++.|....+. .+++.+....+
T Consensus 465 ~~~~~~i~~~~~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~-~~lv~~gsf~E 540 (654)
T COG1199 465 AKLAAYLREILKASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEG-LILVGGGSFWE 540 (654)
T ss_pred HHHHHHHHHHHhhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCC-eEEEeeccccC
Confidence 33444444433 34558999999999999999999876653 445556555 44889999987543 67788899999
Q ss_pred CCCCCC--CCEEEEecCCCC-chh-----------------------------HHHHHHhhhccCCCCcEEE
Q psy1089 306 GLNLTA--ADTCILYDSDWN-PQV-----------------------------DIQAEARCHRIGQTKPVCI 345 (404)
Q Consensus 306 GlnL~~--a~~VI~~d~~wn-p~~-----------------------------~~Qa~gR~~R~Gq~~~V~V 345 (404)
|+|+++ +..||+.-.|+- |.. ..|++||+.|--+.+.|.|
T Consensus 541 GVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~iv 612 (654)
T COG1199 541 GVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIV 612 (654)
T ss_pred cccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEE
Confidence 999984 578888887776 221 1499999999555444443
No 146
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=95.20 E-value=0.15 Score=57.45 Aligned_cols=94 Identities=17% Similarity=0.185 Sum_probs=62.8
Q ss_pred HHHHHHHHHhh-hCCCeEEEEecchHHHHHHHHHHHhcCC--ceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccc
Q psy1089 228 IVLNQLLHKLK-QTNHKTLVFSTMVKVLNFIEELCVLENY--NYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGG 304 (404)
Q Consensus 228 ~~L~~ll~~l~-~~~~KvlIFs~~~~~l~~L~~~L~~~gi--~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g 304 (404)
..+.+.|..+. ..+.++|||..+...++.+...|..... .+..+.=+++...|.+++++|+.+++ . +|+.+.+..
T Consensus 738 ~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~-~-iLlG~~sFw 815 (928)
T PRK08074 738 EEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDK-A-ILLGTSSFW 815 (928)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCC-e-EEEecCccc
Confidence 44555555544 3556888888888999988888864322 12222212222357889999998642 3 455678899
Q ss_pred cCCCCCC--CCEEEEecCCCC
Q psy1089 305 QGLNLTA--ADTCILYDSDWN 323 (404)
Q Consensus 305 ~GlnL~~--a~~VI~~d~~wn 323 (404)
+|+|+++ ...||+.-.|+.
T Consensus 816 EGVD~pg~~l~~viI~kLPF~ 836 (928)
T PRK08074 816 EGIDIPGDELSCLVIVRLPFA 836 (928)
T ss_pred CccccCCCceEEEEEecCCCC
Confidence 9999985 488999888873
No 147
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=95.07 E-value=0.21 Score=54.52 Aligned_cols=91 Identities=13% Similarity=0.226 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhc-CCceEeccCCcCHHHHHHHHHHHhC----CCCceEEEeecc
Q psy1089 227 MIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLE-NYNYYRLHGSIRNEERNDAVQQFNG----STEWGVFLLSTR 301 (404)
Q Consensus 227 l~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~-gi~~~~i~G~~~~~~R~~~i~~F~~----~~~~~vlLis~~ 301 (404)
...+.+.|..+...+..++||..+-..++.+...|... +.+ +...|.. .|.++++.|.+ ++ .. +|+.+.
T Consensus 520 ~~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~-~~-VL~g~~ 593 (697)
T PRK11747 520 TAEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGE-GS-VLFGLQ 593 (697)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCC-Ce-EEEEec
Confidence 34555666555555566888888889999998888642 333 3445643 47788877764 32 23 455568
Q ss_pred ccccCCCCCC--CCEEEEecCCCC
Q psy1089 302 AGGQGLNLTA--ADTCILYDSDWN 323 (404)
Q Consensus 302 a~g~GlnL~~--a~~VI~~d~~wn 323 (404)
+..+|+|+++ ++.||+.-.|+-
T Consensus 594 sf~EGVD~pGd~l~~vII~kLPF~ 617 (697)
T PRK11747 594 SFAEGLDLPGDYLTQVIITKIPFA 617 (697)
T ss_pred cccccccCCCCceEEEEEEcCCCC
Confidence 8899999974 789999887764
No 148
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=94.61 E-value=0.37 Score=53.47 Aligned_cols=90 Identities=14% Similarity=0.106 Sum_probs=62.1
Q ss_pred HHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCC
Q psy1089 229 VLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLN 308 (404)
Q Consensus 229 ~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~Gln 308 (404)
.+.+.+..+...+.+++|+..+.++++.+...|....++. ..-|... .+.+++++|+.++ .. +|+.+.+..+|+|
T Consensus 635 ~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~-~~-vLlG~~sFwEGVD 709 (820)
T PRK07246 635 EIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGE-QQ-ILLGLGSFWEGVD 709 (820)
T ss_pred HHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCC-Ce-EEEecchhhCCCC
Confidence 4555555555667789999889999999888887554444 4445332 2567899999864 23 5566689999999
Q ss_pred CC--CCCEEEEecCCCC
Q psy1089 309 LT--AADTCILYDSDWN 323 (404)
Q Consensus 309 L~--~a~~VI~~d~~wn 323 (404)
++ .+..||+.-.|+-
T Consensus 710 ~p~~~~~~viI~kLPF~ 726 (820)
T PRK07246 710 FVQADRMIEVITRLPFD 726 (820)
T ss_pred CCCCCeEEEEEecCCCC
Confidence 96 3555667665644
No 149
>KOG0924|consensus
Probab=94.56 E-value=0.045 Score=57.76 Aligned_cols=119 Identities=18% Similarity=0.262 Sum_probs=83.9
Q ss_pred CCCeEEEEecchHH----HHHHHHHHH----h--cCCceEeccCCcCHHHHHHHHHHHhCCC-CceEEEeeccccccCCC
Q psy1089 240 TNHKTLVFSTMVKV----LNFIEELCV----L--ENYNYYRLHGSIRNEERNDAVQQFNGST-EWGVFLLSTRAGGQGLN 308 (404)
Q Consensus 240 ~~~KvlIFs~~~~~----l~~L~~~L~----~--~gi~~~~i~G~~~~~~R~~~i~~F~~~~-~~~vlLis~~a~g~Gln 308 (404)
...-+|||..-... .++|...|. . .++.+..|+..+|.....++ |+..+ +.+-+|++|..+.+.|+
T Consensus 562 ~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~ki---Fq~a~~~vRK~IvATNIAETSLT 638 (1042)
T KOG0924|consen 562 PPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKI---FQKAEGGVRKCIVATNIAETSLT 638 (1042)
T ss_pred CCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhh---cccCCCCceeEEEeccchhhcee
Confidence 33678999765443 445555553 2 26778899999998766555 55333 56778889999999999
Q ss_pred CCCCCEEEEec----CCCCch-----------hHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHH
Q psy1089 309 LTAADTCILYD----SDWNPQ-----------VDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTI 361 (404)
Q Consensus 309 L~~a~~VI~~d----~~wnp~-----------~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~ 361 (404)
+.+..+||-.. -.+||. .-.+|.-|+||.|.+.+-+.|||+++++..+.|+.-
T Consensus 639 i~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~s 706 (1042)
T KOG0924|consen 639 IPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEMLPS 706 (1042)
T ss_pred ecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhhcccC
Confidence 99999988653 233433 223566667777777788999999999888777643
No 150
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.53 E-value=0.39 Score=52.48 Aligned_cols=94 Identities=17% Similarity=0.216 Sum_probs=62.1
Q ss_pred HHHHHHHHHhhh-CCCeEEEEecchHHHHHHHHHHHhcCC-------ceEeccCCcCHHHHHHHHHHHhCC--CCceEEE
Q psy1089 228 IVLNQLLHKLKQ-TNHKTLVFSTMVKVLNFIEELCVLENY-------NYYRLHGSIRNEERNDAVQQFNGS--TEWGVFL 297 (404)
Q Consensus 228 ~~L~~ll~~l~~-~~~KvlIFs~~~~~l~~L~~~L~~~gi-------~~~~i~G~~~~~~R~~~i~~F~~~--~~~~vlL 297 (404)
..+.+.|..+.. .+..+|||..+-..++.+...+...|+ ..+.+-+... .++..++++|... .+...+|
T Consensus 508 ~~l~~~i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~-~~~~~~l~~f~~~~~~~~gavL 586 (705)
T TIGR00604 508 RNLGELLVEFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDA-QETSDALERYKQAVSEGRGAVL 586 (705)
T ss_pred HHHHHHHHHHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCc-chHHHHHHHHHHHHhcCCceEE
Confidence 445555555433 457899999888888888877765432 2233333222 5789999999752 1112244
Q ss_pred eec--cccccCCCCC--CCCEEEEecCCC
Q psy1089 298 LST--RAGGQGLNLT--AADTCILYDSDW 322 (404)
Q Consensus 298 is~--~a~g~GlnL~--~a~~VI~~d~~w 322 (404)
++. ...++|+|+. .+..||+...|+
T Consensus 587 ~av~gGk~sEGIDf~~~~~r~ViivGlPf 615 (705)
T TIGR00604 587 LSVAGGKVSEGIDFCDDLGRAVIMVGIPY 615 (705)
T ss_pred EEecCCcccCccccCCCCCcEEEEEccCC
Confidence 444 5788999997 488999999888
No 151
>COG4889 Predicted helicase [General function prediction only]
Probab=93.65 E-value=0.26 Score=53.69 Aligned_cols=83 Identities=22% Similarity=0.226 Sum_probs=63.4
Q ss_pred ceEeccCCcCHHHHHHHHHHHhC-CCCceEEEeeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCc-EE
Q psy1089 267 NYYRLHGSIRNEERNDAVQQFNG-STEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKP-VC 344 (404)
Q Consensus 267 ~~~~i~G~~~~~~R~~~i~~F~~-~~~~~vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~-V~ 344 (404)
.+--++|.++..+|.+...--+. .++.+-+|-..+..++|++.+..+-|||++|--.-.+..|++||+-|-...+. -+
T Consensus 501 Si~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGY 580 (1518)
T COG4889 501 SIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGY 580 (1518)
T ss_pred EeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccce
Confidence 34558999999999665544433 23445567788899999999999999999999888899999999999865443 44
Q ss_pred EEEEE
Q psy1089 345 IYRLV 349 (404)
Q Consensus 345 Vy~Li 349 (404)
|+-.|
T Consensus 581 IILPI 585 (1518)
T COG4889 581 IILPI 585 (1518)
T ss_pred EEEEe
Confidence 44444
No 152
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=93.45 E-value=0.53 Score=51.28 Aligned_cols=112 Identities=18% Similarity=0.332 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecccccc
Q psy1089 226 KMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQ 305 (404)
Q Consensus 226 Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~ 305 (404)
...+...|+..+ ..|+++.|||....+.+++++.+...+..+..++|..+.. -++.|. ... +++-+.+...
T Consensus 268 ~~tF~~~L~~~L-~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~----dv~~W~---~~~-VviYT~~itv 338 (824)
T PF02399_consen 268 ETTFFSELLARL-NAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLE----DVESWK---KYD-VVIYTPVITV 338 (824)
T ss_pred hhhHHHHHHHHH-hCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcc----cccccc---cee-EEEEeceEEE
Confidence 444555555544 5789999999999999999999998888999998877665 233343 344 4555566677
Q ss_pred CCCCC--CCCEEEEe--cCCCCchh--HHHHHHhhhccCCCCcEEEEE
Q psy1089 306 GLNLT--AADTCILY--DSDWNPQV--DIQAEARCHRIGQTKPVCIYR 347 (404)
Q Consensus 306 GlnL~--~a~~VI~~--d~~wnp~~--~~Qa~gR~~R~Gq~~~V~Vy~ 347 (404)
|+++. ..+.|+.| .....|.. ..|.+||+..++.. ++.||.
T Consensus 339 G~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~~-ei~v~~ 385 (824)
T PF02399_consen 339 GLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLDN-EIYVYI 385 (824)
T ss_pred EeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhccC-eEEEEE
Confidence 77764 46667666 33334543 57999999888744 466653
No 153
>KOG0949|consensus
Probab=93.36 E-value=0.13 Score=56.45 Aligned_cols=70 Identities=19% Similarity=0.191 Sum_probs=58.8
Q ss_pred eccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEec-CCCCchhHHHHHHhhhccCCCC
Q psy1089 270 RLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYD-SDWNPQVDIQAEARCHRIGQTK 341 (404)
Q Consensus 270 ~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~d-~~wnp~~~~Qa~gR~~R~Gq~~ 341 (404)
.-|.+++...|+.+---|+.|. .. +|++|...+.|||.++-..|+..| +--||-.|.|+.||+||-|=..
T Consensus 967 ~HHaglNr~yR~~VEvLFR~g~-L~-VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~ 1037 (1330)
T KOG0949|consen 967 VHHAGLNRKYRSLVEVLFRQGH-LQ-VLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDT 1037 (1330)
T ss_pred ccccccchHHHHHHHHHhhcCc-eE-EEEEeeehhcccCCCceeEEEeccccccCchhHHhhhcccccccccc
Confidence 3577889999998888899985 44 577889999999999888777776 6789999999999999999543
No 154
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=92.95 E-value=0.7 Score=39.80 Aligned_cols=46 Identities=15% Similarity=0.271 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhCCCCceEEEeeccccccCCCCCC--CCEEEEecCCCC
Q psy1089 277 NEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTA--ADTCILYDSDWN 323 (404)
Q Consensus 277 ~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~--a~~VI~~d~~wn 323 (404)
..+...+++.|...... .+|+++....+|+|+++ +..||+...|+-
T Consensus 33 ~~~~~~~l~~f~~~~~~-~iL~~~~~~~EGiD~~g~~~r~vii~glPfp 80 (141)
T smart00492 33 GKETGKLLEKYVEACEN-AILLATARFSEGVDFPGDYLRAVIIDGLPFP 80 (141)
T ss_pred hhHHHHHHHHHHHcCCC-EEEEEccceecceecCCCCeeEEEEEecCCC
Confidence 33578899999876322 35566666999999984 678888887763
No 155
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=92.65 E-value=0.56 Score=51.99 Aligned_cols=88 Identities=18% Similarity=0.263 Sum_probs=69.5
Q ss_pred cHHHHHHHHHHHhhhCCCeEEEEecc---hHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeec-
Q psy1089 225 GKMIVLNQLLHKLKQTNHKTLVFSTM---VKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLST- 300 (404)
Q Consensus 225 ~Kl~~L~~ll~~l~~~~~KvlIFs~~---~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~- 300 (404)
.-...+.++++.+ |.-.|||.+. ....+.|.++|+.+|+++..++. ...+.++.|..|. +.+++...
T Consensus 322 ~~~e~~~elvk~l---G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a-----~~~~~le~F~~Ge-idvLVGvAs 392 (1187)
T COG1110 322 ESLEKVVELVKKL---GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHA-----EKEEALEDFEEGE-VDVLVGVAS 392 (1187)
T ss_pred ccHHHHHHHHHHh---CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeec-----cchhhhhhhccCc-eeEEEEecc
Confidence 4444555555544 6678999998 88899999999999999988876 2367899999996 66666543
Q ss_pred --cccccCCCCC-CCCEEEEecCC
Q psy1089 301 --RAGGQGLNLT-AADTCILYDSD 321 (404)
Q Consensus 301 --~a~g~GlnL~-~a~~VI~~d~~ 321 (404)
.+.-+||||+ .+.++||+..|
T Consensus 393 yYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 393 YYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred cccceeecCCchhheeEEEEecCC
Confidence 3567999998 89999999988
No 156
>KOG1513|consensus
Probab=92.54 E-value=0.13 Score=55.15 Aligned_cols=76 Identities=24% Similarity=0.274 Sum_probs=56.9
Q ss_pred HHHHhCCCCceEEEeeccccccCCCCCCCCE--------EEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHH
Q psy1089 284 VQQFNGSTEWGVFLLSTRAGGQGLNLTAADT--------CILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355 (404)
Q Consensus 284 i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~--------VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiE 355 (404)
..+|.+|. .-|.||| .+++.||.|+.-.. =|-+++||+...-+|-.||+||-.|.+.-....||+.--=|
T Consensus 850 KqrFM~Ge-K~vAIIS-EAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGE 927 (1300)
T KOG1513|consen 850 KQRFMDGE-KLVAIIS-EAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGE 927 (1300)
T ss_pred Hhhhcccc-ceeeeee-hhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccc
Confidence 45688885 4556665 88899999974332 36789999999999999999999999887777777765444
Q ss_pred HHHHHH
Q psy1089 356 VHLFTI 361 (404)
Q Consensus 356 e~i~~~ 361 (404)
.+.-..
T Consensus 928 rRFAS~ 933 (1300)
T KOG1513|consen 928 RRFASI 933 (1300)
T ss_pred hHHHHH
Confidence 443333
No 157
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.46 E-value=1.2 Score=46.71 Aligned_cols=96 Identities=18% Similarity=0.126 Sum_probs=72.1
Q ss_pred ccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHh-cCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEee
Q psy1089 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVL-ENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLS 299 (404)
Q Consensus 221 ~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~-~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis 299 (404)
...|||..+...++......|.++||.+.......-+.+.|+. .|..+..+||+++..+|.+...+-.+++ ..+++.+
T Consensus 5 ~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~-~~IVVGT 83 (505)
T TIGR00595 5 VTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGE-ILVVIGT 83 (505)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCC-CCEEECC
Confidence 3569999999988888888899999999998888777777764 5788899999999999988887777764 4555544
Q ss_pred ccccccCCCCCCCCEEEEec
Q psy1089 300 TRAGGQGLNLTAADTCILYD 319 (404)
Q Consensus 300 ~~a~g~GlnL~~a~~VI~~d 319 (404)
..+. =+.+.....||+=|
T Consensus 84 rsal--f~p~~~l~lIIVDE 101 (505)
T TIGR00595 84 RSAL--FLPFKNLGLIIVDE 101 (505)
T ss_pred hHHH--cCcccCCCEEEEEC
Confidence 3332 13455666666554
No 158
>KOG0948|consensus
Probab=92.26 E-value=0.34 Score=51.91 Aligned_cols=127 Identities=14% Similarity=0.094 Sum_probs=81.4
Q ss_pred HHHHHHHhh-hCCCeEEEEecchHHHHHHHHHHHhcCCc---------------------------------------eE
Q psy1089 230 LNQLLHKLK-QTNHKTLVFSTMVKVLNFIEELCVLENYN---------------------------------------YY 269 (404)
Q Consensus 230 L~~ll~~l~-~~~~KvlIFs~~~~~l~~L~~~L~~~gi~---------------------------------------~~ 269 (404)
+.++++.+. .....|||||-+.+.++.++-.+....++ +.
T Consensus 371 i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIG 450 (1041)
T KOG0948|consen 371 IYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIG 450 (1041)
T ss_pred HHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccc
Confidence 445555443 35689999999999888887766543221 22
Q ss_pred eccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEecCC--------CCchhHHHHHHhhhccCCCC
Q psy1089 270 RLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSD--------WNPQVDIQAEARCHRIGQTK 341 (404)
Q Consensus 270 ~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~d~~--------wnp~~~~Qa~gR~~R~Gq~~ 341 (404)
.-|++.-+--++-+-=-|+.|= ++ +|.+|...+.|||.++-+.|+---.- -+...|+|--||+||-|-..
T Consensus 451 IHHsGLLPIlKE~IEILFqEGL-vK-vLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~Dd 528 (1041)
T KOG0948|consen 451 IHHSGLLPILKEVIEILFQEGL-VK-VLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDD 528 (1041)
T ss_pred cccccchHHHHHHHHHHHhccH-HH-HHHhhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCC
Confidence 3355555544444444577773 34 56678999999999987766654333 34678999999999999766
Q ss_pred cEEEEEEEeCCCHHHHHH
Q psy1089 342 PVCIYRLVSHSTYQVHLF 359 (404)
Q Consensus 342 ~V~Vy~Li~~~TiEe~i~ 359 (404)
.-.|+-+|.+ .+|...-
T Consensus 529 rGivIlmiDe-km~~~~a 545 (1041)
T KOG0948|consen 529 RGIVILMIDE-KMEPQVA 545 (1041)
T ss_pred CceEEEEecC-cCCHHHH
Confidence 5555544433 3444433
No 159
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=91.97 E-value=1.2 Score=48.53 Aligned_cols=95 Identities=12% Similarity=0.118 Sum_probs=70.4
Q ss_pred cCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHH----HHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEE
Q psy1089 222 SSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFI----EELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFL 297 (404)
Q Consensus 222 ~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L----~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL 297 (404)
..|||..+..-.+-.....|.+++|.+.......-+ ...+...|+++..++|+++..+|...+....++. +.+++
T Consensus 291 TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~-~~IvV 369 (681)
T PRK10917 291 VGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGE-ADIVI 369 (681)
T ss_pred CCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCC-CCEEE
Confidence 479999876655544456788999999887766544 4445566899999999999999999999998874 66777
Q ss_pred eeccccccCCCCCCCCEEEE
Q psy1089 298 LSTRAGGQGLNLTAADTCIL 317 (404)
Q Consensus 298 is~~a~g~GlnL~~a~~VI~ 317 (404)
.+.......+.+.....||+
T Consensus 370 gT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 370 GTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred chHHHhcccchhcccceEEE
Confidence 66655555566666665555
No 160
>PRK05580 primosome assembly protein PriA; Validated
Probab=91.77 E-value=1.7 Score=47.30 Aligned_cols=96 Identities=18% Similarity=0.107 Sum_probs=72.9
Q ss_pred ccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHh-cCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEee
Q psy1089 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVL-ENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLS 299 (404)
Q Consensus 221 ~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~-~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis 299 (404)
...|||......++......|.++||.+.......-+.+.|+. .|..+..++|+++..+|.+...+...+. ..+++.+
T Consensus 170 ~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~-~~IVVgT 248 (679)
T PRK05580 170 VTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGE-AKVVIGA 248 (679)
T ss_pred CCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCC-CCEEEec
Confidence 3459999999888887777789999999999888877777764 5888999999999999988888887774 5555554
Q ss_pred ccccccCCCCCCCCEEEEec
Q psy1089 300 TRAGGQGLNLTAADTCILYD 319 (404)
Q Consensus 300 ~~a~g~GlnL~~a~~VI~~d 319 (404)
..+. -+.+.....||+=|
T Consensus 249 rsal--~~p~~~l~liVvDE 266 (679)
T PRK05580 249 RSAL--FLPFKNLGLIIVDE 266 (679)
T ss_pred cHHh--cccccCCCEEEEEC
Confidence 4332 24455666666655
No 161
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=91.74 E-value=0.71 Score=39.82 Aligned_cols=45 Identities=16% Similarity=0.412 Sum_probs=30.6
Q ss_pred HHHHHHHHHhCCCC-ceEEEeeccc--cccCCCCCC--CCEEEEecCCCC
Q psy1089 279 ERNDAVQQFNGSTE-WGVFLLSTRA--GGQGLNLTA--ADTCILYDSDWN 323 (404)
Q Consensus 279 ~R~~~i~~F~~~~~-~~vlLis~~a--~g~GlnL~~--a~~VI~~d~~wn 323 (404)
+...+++.|+.... ...+|+++.. .++|+|+++ +..||+...|+-
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp 81 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFP 81 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCC
Confidence 44788888987532 1234444444 799999984 678998887763
No 162
>KOG0926|consensus
Probab=91.23 E-value=0.15 Score=54.88 Aligned_cols=78 Identities=21% Similarity=0.280 Sum_probs=54.0
Q ss_pred eEeccCCcCHHHHHHHHHHHhCCC-CceEEEeeccccccCCCCCCCCEEEEec-----------------CCCC-chhHH
Q psy1089 268 YYRLHGSIRNEERNDAVQQFNGST-EWGVFLLSTRAGGQGLNLTAADTCILYD-----------------SDWN-PQVDI 328 (404)
Q Consensus 268 ~~~i~G~~~~~~R~~~i~~F~~~~-~~~vlLis~~a~g~GlnL~~a~~VI~~d-----------------~~wn-p~~~~ 328 (404)
+..+++=.+.++..++ |...+ +++..+++|.++.++|++++..+||-.. -.|- -+.=.
T Consensus 607 vLPLYSLLs~~~Q~RV---F~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASad 683 (1172)
T KOG0926|consen 607 VLPLYSLLSTEKQMRV---FDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASAD 683 (1172)
T ss_pred EeehhhhcCHHHhhhh---ccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccc
Confidence 4455665666655555 44433 5889999999999999999999998543 1222 22334
Q ss_pred HHHHhhhccCCCCcEEEEEEEeC
Q psy1089 329 QAEARCHRIGQTKPVCIYRLVSH 351 (404)
Q Consensus 329 Qa~gR~~R~Gq~~~V~Vy~Li~~ 351 (404)
||.||+||+| +-|.|||++.
T Consensus 684 QRAGRAGRtg---pGHcYRLYSS 703 (1172)
T KOG0926|consen 684 QRAGRAGRTG---PGHCYRLYSS 703 (1172)
T ss_pred hhccccCCCC---CCceeehhhh
Confidence 8888887776 4588999764
No 163
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=91.21 E-value=0.8 Score=49.81 Aligned_cols=95 Identities=20% Similarity=0.223 Sum_probs=68.9
Q ss_pred HHHHHHHHH--hcCCceEeccCCcCHHH--HHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEecCC--CC----
Q psy1089 254 LNFIEELCV--LENYNYYRLHGSIRNEE--RNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSD--WN---- 323 (404)
Q Consensus 254 l~~L~~~L~--~~gi~~~~i~G~~~~~~--R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~d~~--wn---- 323 (404)
.+.+++.|. ..+.++.++++.++..+ -...++.|.++. . .+|+.|+..+.|+|+++...|.++|.+ -+
T Consensus 493 terieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge-~-dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~Df 570 (730)
T COG1198 493 TERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGE-A-DILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDF 570 (730)
T ss_pred HHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCC-C-CeeecchhhhcCCCcccceEEEEEechhhhcCCCc
Confidence 455666665 34788999999877644 567899999996 2 377888999999999999988766533 22
Q ss_pred ------chhHHHHHHhhhccCCCCcEEEEEEEe
Q psy1089 324 ------PQVDIQAEARCHRIGQTKPVCIYRLVS 350 (404)
Q Consensus 324 ------p~~~~Qa~gR~~R~Gq~~~V~Vy~Li~ 350 (404)
...+.|..||+||.+-...|-|-....
T Consensus 571 RA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P 603 (730)
T COG1198 571 RASERTFQLLMQVAGRAGRAGKPGEVVIQTYNP 603 (730)
T ss_pred chHHHHHHHHHHHHhhhccCCCCCeEEEEeCCC
Confidence 223459999999997776666554433
No 164
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=91.19 E-value=1.6 Score=47.53 Aligned_cols=78 Identities=17% Similarity=0.114 Sum_probs=66.3
Q ss_pred ccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHH-hcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEee
Q psy1089 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCV-LENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLS 299 (404)
Q Consensus 221 ~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~-~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis 299 (404)
+..|||.++..+++......|+.+||-..-.....-+...|+ ..|.++..+|++++..+|...-.+...|. .+|++.+
T Consensus 225 vTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~-~~vVIGt 303 (730)
T COG1198 225 VTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGE-ARVVIGT 303 (730)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCC-ceEEEEe
Confidence 556999999999999999999999999988777666666554 56889999999999999999999999985 5666654
No 165
>KOG0947|consensus
Probab=90.93 E-value=2.9 Score=46.32 Aligned_cols=122 Identities=16% Similarity=0.114 Sum_probs=80.2
Q ss_pred HHHHHHHHhhhC-CCeEEEEecchHHHHHHHHHHHhcCCc---------------------------------------e
Q psy1089 229 VLNQLLHKLKQT-NHKTLVFSTMVKVLNFIEELCVLENYN---------------------------------------Y 268 (404)
Q Consensus 229 ~L~~ll~~l~~~-~~KvlIFs~~~~~l~~L~~~L~~~gi~---------------------------------------~ 268 (404)
...+++..+... --.+||||-+++-+|.-.++|...++. +
T Consensus 554 ~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGi 633 (1248)
T KOG0947|consen 554 TWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGI 633 (1248)
T ss_pred hHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcc
Confidence 456666666543 357899998888888777777644321 3
Q ss_pred EeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEec--------CCCCchhHHHHHHhhhccCCC
Q psy1089 269 YRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYD--------SDWNPQVDIQAEARCHRIGQT 340 (404)
Q Consensus 269 ~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~d--------~~wnp~~~~Qa~gR~~R~Gq~ 340 (404)
..-||+.=+--++-+---|+.|= ++ +|++|...+.|+|+++-..|+--= ..-+|..|.|.-||+||-|-.
T Consensus 634 aVHH~GlLPivKE~VE~LFqrGl-VK-VLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD 711 (1248)
T KOG0947|consen 634 AVHHGGLLPIVKEVVELLFQRGL-VK-VLFATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLD 711 (1248)
T ss_pred hhhcccchHHHHHHHHHHHhcCc-eE-EEeehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccC
Confidence 34455555544444455577772 34 577789999999999766554321 345799999999999999976
Q ss_pred CcEEEEEEEeCCC
Q psy1089 341 KPVCIYRLVSHST 353 (404)
Q Consensus 341 ~~V~Vy~Li~~~T 353 (404)
..-+|.- +++++
T Consensus 712 ~tGTVii-~~~~~ 723 (1248)
T KOG0947|consen 712 ETGTVII-MCKDS 723 (1248)
T ss_pred cCceEEE-EecCC
Confidence 5544443 33443
No 166
>KOG0920|consensus
Probab=90.67 E-value=0.72 Score=51.12 Aligned_cols=126 Identities=19% Similarity=0.252 Sum_probs=88.0
Q ss_pred cHHHHHHHHHHHhhh--CCCeEEEEecchHHHHHHHHHHHhc-------CCceEeccCCcCHHHHHHHHHHHhCCCCceE
Q psy1089 225 GKMIVLNQLLHKLKQ--TNHKTLVFSTMVKVLNFIEELCVLE-------NYNYYRLHGSIRNEERNDAVQQFNGSTEWGV 295 (404)
Q Consensus 225 ~Kl~~L~~ll~~l~~--~~~KvlIFs~~~~~l~~L~~~L~~~-------gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v 295 (404)
-....+..++..+.+ ....+|||-.-...+..+...|... .+-+..+|++++..+.+.+....-. +++-
T Consensus 395 id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~--g~RK 472 (924)
T KOG0920|consen 395 IDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPK--GTRK 472 (924)
T ss_pred ccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCC--Ccch
Confidence 456667777776644 3468999999998888888877531 2456778999999888777554443 3566
Q ss_pred EEeeccccccCCCCCCCCEEEEe--------cCCCC----------chhHHHHHHhhhccCCCCcEEEEEEEeCCCHH
Q psy1089 296 FLLSTRAGGQGLNLTAADTCILY--------DSDWN----------PQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355 (404)
Q Consensus 296 lLis~~a~g~GlnL~~a~~VI~~--------d~~wn----------p~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiE 355 (404)
+|++|..+..+|++..+-+||-. |+.-+ .+.-.||.||+||. .+-.+|+|++..-.+
T Consensus 473 IIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv---~~G~cy~L~~~~~~~ 547 (924)
T KOG0920|consen 473 IILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV---RPGICYHLYTRSRYE 547 (924)
T ss_pred hhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc---cCCeeEEeechhhhh
Confidence 88999999999999888877743 33222 12334777766665 556889999876443
No 167
>KOG0923|consensus
Probab=89.49 E-value=1 Score=47.80 Aligned_cols=108 Identities=19% Similarity=0.195 Sum_probs=72.3
Q ss_pred hCCCeEEEEecchHHHHHHHHHHH----hc-----CCceEeccCCcCHHHHHHHHHHHhCCC-CceEEEeeccccccCCC
Q psy1089 239 QTNHKTLVFSTMVKVLNFIEELCV----LE-----NYNYYRLHGSIRNEERNDAVQQFNGST-EWGVFLLSTRAGGQGLN 308 (404)
Q Consensus 239 ~~~~KvlIFs~~~~~l~~L~~~L~----~~-----gi~~~~i~G~~~~~~R~~~i~~F~~~~-~~~vlLis~~a~g~Gln 308 (404)
.+..-+|||-.-...++.....|. .. .+-++.|+.+.|.+...++ |...| +++-++++|..+.++|+
T Consensus 471 qp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakI---FePtP~gaRKVVLATNIAETSlT 547 (902)
T KOG0923|consen 471 QPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKI---FEPTPPGARKVVLATNIAETSLT 547 (902)
T ss_pred cCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhh---cCCCCCCceeEEEeecchhhcee
Confidence 355789999887777665555543 22 3457889999998776655 55444 56667888899999999
Q ss_pred CCCCCEEEEec----CCCCch--------------hHHHHHHhhhccCCCCcEEEEEEEeCC
Q psy1089 309 LTAADTCILYD----SDWNPQ--------------VDIQAEARCHRIGQTKPVCIYRLVSHS 352 (404)
Q Consensus 309 L~~a~~VI~~d----~~wnp~--------------~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~ 352 (404)
+.+..+||--. -.+||. .-.||.||+||.| +-..|||++.-
T Consensus 548 IdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg---PGKCfRLYt~~ 606 (902)
T KOG0923|consen 548 IDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG---PGKCFRLYTAW 606 (902)
T ss_pred ecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC---CCceEEeechh
Confidence 99988887322 122322 2235555555554 66789998853
No 168
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=89.37 E-value=3.8 Score=44.12 Aligned_cols=96 Identities=17% Similarity=0.173 Sum_probs=60.9
Q ss_pred HHHHHHH-hhhCCCeEEEEecchHHHHHHHHHHHhcCCce-EeccCCcCHHHHHHHHHHHhCC--CCceEEEeecccccc
Q psy1089 230 LNQLLHK-LKQTNHKTLVFSTMVKVLNFIEELCVLENYNY-YRLHGSIRNEERNDAVQQFNGS--TEWGVFLLSTRAGGQ 305 (404)
Q Consensus 230 L~~ll~~-l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~-~~i~G~~~~~~R~~~i~~F~~~--~~~~vlLis~~a~g~ 305 (404)
+.+.+.. +...+.+++|...+...+..+...|... +++ +.+.|..+ .+..++++|... .+..-+|+.+.+..+
T Consensus 458 ~~~~~~~~~~~~~G~~lvLfTS~~~~~~~~~~l~~~-l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfwe 534 (636)
T TIGR03117 458 VSLSTAAILRKAQGGTLVLTTAFSHISAIGQLVELG-IPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWT 534 (636)
T ss_pred HHHHHHHHHHHcCCCEEEEechHHHHHHHHHHHHhh-cCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCcccc
Confidence 3333333 3334445555555556677777777542 222 34556543 367789999874 112336777899999
Q ss_pred CCCC----------CCCCEEEEecCCCCchhHH
Q psy1089 306 GLNL----------TAADTCILYDSDWNPQVDI 328 (404)
Q Consensus 306 GlnL----------~~a~~VI~~d~~wnp~~~~ 328 (404)
|+|+ ...++||+.-.|+-|.+..
T Consensus 535 GvDv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~ 567 (636)
T TIGR03117 535 GIDLTHKPVSPDKDNLLTDLIITCAPFGLNRSL 567 (636)
T ss_pred ccccCCccCCCCCCCcccEEEEEeCCCCcCChH
Confidence 9999 3689999999998875443
No 169
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=89.35 E-value=2.3 Score=45.82 Aligned_cols=95 Identities=9% Similarity=0.083 Sum_probs=67.9
Q ss_pred cCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHH----HHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEE
Q psy1089 222 SSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEEL----CVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFL 297 (404)
Q Consensus 222 ~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~----L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL 297 (404)
..|||..+..-.+......|.+++|.+.......-+.+. +...|+++..++|+++..+|....+...++. +.+++
T Consensus 265 TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~-~~IiV 343 (630)
T TIGR00643 265 VGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQ-IHLVV 343 (630)
T ss_pred CCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCC-CCEEE
Confidence 479999875544444445788999999887766655444 4455899999999999999999999888874 56677
Q ss_pred eeccccccCCCCCCCCEEEE
Q psy1089 298 LSTRAGGQGLNLTAADTCIL 317 (404)
Q Consensus 298 is~~a~g~GlnL~~a~~VI~ 317 (404)
.+......++.+.....||+
T Consensus 344 gT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 344 GTHALIQEKVEFKRLALVII 363 (630)
T ss_pred ecHHHHhccccccccceEEE
Confidence 66655555555656655554
No 170
>PRK14873 primosome assembly protein PriA; Provisional
Probab=87.04 E-value=4.3 Score=44.03 Aligned_cols=132 Identities=8% Similarity=-0.079 Sum_probs=85.3
Q ss_pred CCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHh-cC-CceEeccCCcCHHHHHHHHHHHhCCCCceEEEeec
Q psy1089 223 SSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVL-EN-YNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLST 300 (404)
Q Consensus 223 ~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~-~g-i~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~ 300 (404)
.|||.+...+++......|+.+||...-......+...|+. .| ..++.+|++++..+|.+...+..+|. ..|+|.+
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~-~~IViGt- 247 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQ-ARVVVGT- 247 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCC-CcEEEEc-
Confidence 58999999999999999999999999998888888777763 34 67899999999999999999988884 4555544
Q ss_pred cccccCCCCCCCCEEEEecCC-CCchhH----HHHHHhhhccCCCCcEEEEEEEeCCCHHHH
Q psy1089 301 RAGGQGLNLTAADTCILYDSD-WNPQVD----IQAEARCHRIGQTKPVCIYRLVSHSTYQVH 357 (404)
Q Consensus 301 ~a~g~GlnL~~a~~VI~~d~~-wnp~~~----~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~ 357 (404)
.++- =+-+.+...||+-|-. .+.... .++-+=+...++...+.++---+.-|+|-.
T Consensus 248 RSAv-FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~ 308 (665)
T PRK14873 248 RSAV-FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQ 308 (665)
T ss_pred ceeE-EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHH
Confidence 4321 1123344445544322 211111 122222222233444555555555666654
No 171
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=86.29 E-value=5 Score=45.27 Aligned_cols=96 Identities=10% Similarity=0.017 Sum_probs=72.6
Q ss_pred cCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHH----hcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEE
Q psy1089 222 SSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCV----LENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFL 297 (404)
Q Consensus 222 ~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~----~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL 297 (404)
..|||..+....+-.....+.+++|.+.....+.-....++ ..++.+..++|..+..++.+.+....++. +.+++
T Consensus 481 TGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~-~dIVI 559 (926)
T TIGR00580 481 VGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGK-IDILI 559 (926)
T ss_pred CCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCC-ceEEE
Confidence 46899987665554444567899999999887776655544 45778888999999999999999998874 67777
Q ss_pred eeccccccCCCCCCCCEEEEe
Q psy1089 298 LSTRAGGQGLNLTAADTCILY 318 (404)
Q Consensus 298 is~~a~g~GlnL~~a~~VI~~ 318 (404)
.++......+.+.....+|+=
T Consensus 560 GTp~ll~~~v~f~~L~llVID 580 (926)
T TIGR00580 560 GTHKLLQKDVKFKDLGLLIID 580 (926)
T ss_pred chHHHhhCCCCcccCCEEEee
Confidence 777666666777777776663
No 172
>PRK10689 transcription-repair coupling factor; Provisional
Probab=81.74 E-value=9.7 Score=44.03 Aligned_cols=95 Identities=7% Similarity=-0.042 Sum_probs=69.6
Q ss_pred cCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHH----hcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEE
Q psy1089 222 SSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCV----LENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFL 297 (404)
Q Consensus 222 ~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~----~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL 297 (404)
..+||..+....+-.....+.+++|.+.......-+...+. ..++.+..++|..+..++..++....++. +.+++
T Consensus 630 TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~-~dIVV 708 (1147)
T PRK10689 630 VGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGK-IDILI 708 (1147)
T ss_pred CCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCC-CCEEE
Confidence 47899987655444444578899999998887666655554 34567788999999999999998888763 67788
Q ss_pred eeccccccCCCCCCCCEEEE
Q psy1089 298 LSTRAGGQGLNLTAADTCIL 317 (404)
Q Consensus 298 is~~a~g~GlnL~~a~~VI~ 317 (404)
.++......+.+.....+|+
T Consensus 709 gTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 709 GTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred ECHHHHhCCCCHhhCCEEEE
Confidence 77766655666667666665
No 173
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=80.06 E-value=13 Score=40.03 Aligned_cols=162 Identities=13% Similarity=0.111 Sum_probs=104.4
Q ss_pred CCcHHHHHHHHHHHhhhCCCeEEEEecch----HHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEe
Q psy1089 223 SSGKMIVLNQLLHKLKQTNHKTLVFSTMV----KVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLL 298 (404)
Q Consensus 223 ~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~----~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLi 298 (404)
.|||.-+..-.+-.....|.++.+....- ...+.+.+.|...|+.+..++|++...+|.++..+-.+|. +.+++.
T Consensus 293 GSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~-~~ivVG 371 (677)
T COG1200 293 GSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGE-IDIVVG 371 (677)
T ss_pred CCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCC-CCEEEE
Confidence 48898765544444566888888887642 2345677778888999999999999999999999999995 677776
Q ss_pred eccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccC-CCCcE-EEEEEEeCCCHHHHHHHHHhcCCccccchhhhc
Q psy1089 299 STRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIG-QTKPV-CIYRLVSHSTYQVHLFTIDSSGSVSWSSQSVKE 376 (404)
Q Consensus 299 s~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~G-q~~~V-~Vy~Li~~~TiEe~i~~~~~~K~~~~~~~~~~~ 376 (404)
+-...-..+++.+.-.||+ +++||.|=.-|.- ..|.. ..+-|++.-|---+-+.+.... .++....+|
T Consensus 372 THALiQd~V~F~~LgLVIi--------DEQHRFGV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fg--DldvS~IdE 441 (677)
T COG1200 372 THALIQDKVEFHNLGLVII--------DEQHRFGVHQRLALREKGEQNPHVLVMTATPIPRTLALTAFG--DLDVSIIDE 441 (677)
T ss_pred cchhhhcceeecceeEEEE--------eccccccHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHHhc--cccchhhcc
Confidence 6666667777777777776 2333333333321 01222 4566666666555555554432 233333333
Q ss_pred ccccccccccCcceecccHH
Q psy1089 377 KLPIGFMCVTGSFLKSSSFF 396 (404)
Q Consensus 377 ~l~~~~~~~~~~~~~~~~~~ 396 (404)
+|.|+.++.+..++.--..
T Consensus 442 -lP~GRkpI~T~~i~~~~~~ 460 (677)
T COG1200 442 -LPPGRKPITTVVIPHERRP 460 (677)
T ss_pred -CCCCCCceEEEEeccccHH
Confidence 6667777777666654443
No 174
>KOG0298|consensus
Probab=79.57 E-value=1.5 Score=49.74 Aligned_cols=54 Identities=19% Similarity=0.324 Sum_probs=44.9
Q ss_pred cccccchhhhhhhchhhc--cCCCCeeEEEecCCCHHHHHHHHHHHhhhhhhhhhh
Q psy1089 2 HNILKPFFLRRLKCDVNL--NLPPKKTTVIDCPMVPAQELMYTKVLTKTIGENREQ 55 (404)
Q Consensus 2 ~~ll~pf~LRR~K~~V~~--~LP~K~~~~v~~~lt~~Q~~~Y~~~~~~~~~~~~~~ 55 (404)
+.+.+..+-|+.|.+|.. .+||-.+.+-...|++.|..+|+.....+...+...
T Consensus 593 ~dl~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~ 648 (1394)
T KOG0298|consen 593 LDLFKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAA 648 (1394)
T ss_pred HHHHHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHH
Confidence 456677788999998864 799999999999999999999999988887666544
No 175
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=78.74 E-value=6.2 Score=37.15 Aligned_cols=98 Identities=8% Similarity=0.075 Sum_probs=65.2
Q ss_pred cchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCC--CceEEEeeccccccCCCCCCCCEEEEecCCCCchh
Q psy1089 249 TMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGST--EWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQV 326 (404)
Q Consensus 249 ~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~--~~~vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~~ 326 (404)
.+.+..+.|...+.. ++.+..++++.+... -.|.+++ +..++++.....++|++|.+-...++.-.+-+..+
T Consensus 95 s~~ei~~~l~~~~~~-~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DT 168 (239)
T PF10593_consen 95 SWEEIKPELPKAISD-GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDT 168 (239)
T ss_pred CHHHHHHHHHHHHhc-CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHH
Confidence 345556666666666 788888887665432 4455553 24789999999999999999988888877766666
Q ss_pred HHHHHHhhhccCCCCc-EEEEEEEeCCCHH
Q psy1089 327 DIQAEARCHRIGQTKP-VCIYRLVSHSTYQ 355 (404)
Q Consensus 327 ~~Qa~gR~~R~Gq~~~-V~Vy~Li~~~TiE 355 (404)
..|. ||.- |=+.. .-+-|+.+...+.
T Consensus 169 L~Qm-gRwF--GYR~gY~dl~Ri~~~~~l~ 195 (239)
T PF10593_consen 169 LMQM-GRWF--GYRPGYEDLCRIYMPEELY 195 (239)
T ss_pred HHHH-hhcc--cCCcccccceEEecCHHHH
Confidence 6665 7763 43332 3444555554433
No 176
>KOG2340|consensus
Probab=76.94 E-value=19 Score=37.63 Aligned_cols=128 Identities=12% Similarity=0.172 Sum_probs=90.3
Q ss_pred CCcHHHHH-HHHHHHhhhCC-CeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeec
Q psy1089 223 SSGKMIVL-NQLLHKLKQTN-HKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLST 300 (404)
Q Consensus 223 ~S~Kl~~L-~~ll~~l~~~~-~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~ 300 (404)
...++... ..++..+...+ .-+||+...--..-.+..+++..++.|+.|+--.+..+-.++-+-|..+. ..++|.+-
T Consensus 532 ~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr-~~vlLyTE 610 (698)
T KOG2340|consen 532 PDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGR-KSVLLYTE 610 (698)
T ss_pred chHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcC-ceEEEEeh
Confidence 34566654 45556665433 45688877655566788999999999999988888877788888899885 67788776
Q ss_pred cc-cccCCCCCCCCEEEEecCCCCchhHHH---HHHhhhccCCC--CcEEEEEEEeC
Q psy1089 301 RA-GGQGLNLTAADTCILYDSDWNPQVDIQ---AEARCHRIGQT--KPVCIYRLVSH 351 (404)
Q Consensus 301 ~a-~g~GlnL~~a~~VI~~d~~wnp~~~~Q---a~gR~~R~Gq~--~~V~Vy~Li~~ 351 (404)
++ -=+-..+.+...||+|.||-||.-|.- -.+|.--.|.. ..-+|--|+++
T Consensus 611 R~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytK 667 (698)
T KOG2340|consen 611 RAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTK 667 (698)
T ss_pred hhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeec
Confidence 65 335567889999999999999997764 44455544532 23455555555
No 177
>KOG0925|consensus
Probab=75.45 E-value=25 Score=36.46 Aligned_cols=124 Identities=16% Similarity=0.171 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhh--hCCCeEEEEecchHHHHHHHHHHH----hc-----CCceEeccCCcCHHHHHHHHHHHh---CCC
Q psy1089 226 KMIVLNQLLHKLK--QTNHKTLVFSTMVKVLNFIEELCV----LE-----NYNYYRLHGSIRNEERNDAVQQFN---GST 291 (404)
Q Consensus 226 Kl~~L~~ll~~l~--~~~~KvlIFs~~~~~l~~L~~~L~----~~-----gi~~~~i~G~~~~~~R~~~i~~F~---~~~ 291 (404)
-+++.+..+-++. +...-+|||-.....++...+.+. .. .+.+..++ +.+.+++++--. ++.
T Consensus 236 ylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~ 311 (699)
T KOG0925|consen 236 YLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGA 311 (699)
T ss_pred HHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCC
Confidence 4455554444432 345679999877776654444433 11 23456666 333333332211 122
Q ss_pred CceEEEeeccccccCCCCCCCCEEEEecCC------CC-----------chhHHHHHHhhhccCCCCcEEEEEEEeCCCH
Q psy1089 292 EWGVFLLSTRAGGQGLNLTAADTCILYDSD------WN-----------PQVDIQAEARCHRIGQTKPVCIYRLVSHSTY 354 (404)
Q Consensus 292 ~~~vlLis~~a~g~GlnL~~a~~VI~~d~~------wn-----------p~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~Ti 354 (404)
--+-+++|+..|...+.+.+.-+|| |+. +| |-.-.||.-|.+|.|.+++-..++|+++..+
T Consensus 312 ~~RkvVvstniaetsltidgiv~VI--DpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~ 389 (699)
T KOG0925|consen 312 YGRKVVVSTNIAETSLTIDGIVFVI--DPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAF 389 (699)
T ss_pred ccceEEEEecchheeeeeccEEEEe--cCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhh
Confidence 2344788889999999888776665 443 33 3344599999999999999999999998665
Q ss_pred H
Q psy1089 355 Q 355 (404)
Q Consensus 355 E 355 (404)
+
T Consensus 390 ~ 390 (699)
T KOG0925|consen 390 E 390 (699)
T ss_pred h
Confidence 5
No 178
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=72.02 E-value=30 Score=35.77 Aligned_cols=95 Identities=12% Similarity=0.111 Sum_probs=66.6
Q ss_pred ccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeec
Q psy1089 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLST 300 (404)
Q Consensus 221 ~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~ 300 (404)
...|||--. -++..+. .+..+||.+.....+.-....|...|+++..++|+.+..++..++.....+. ..++++++
T Consensus 34 pTGsGKTl~--y~lp~l~-~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~-~~il~~TP 109 (470)
T TIGR00614 34 PTGGGKSLC--YQLPALC-SDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGK-IKLLYVTP 109 (470)
T ss_pred CCCCcHhHH--HHHHHHH-cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC-CCEEEECH
Confidence 345889642 2333333 3567899999888777777778889999999999999998888888886664 67888887
Q ss_pred cccccCC-------CCCCCCEEEEec
Q psy1089 301 RAGGQGL-------NLTAADTCILYD 319 (404)
Q Consensus 301 ~a~g~Gl-------nL~~a~~VI~~d 319 (404)
....... .+.....||+=+
T Consensus 110 e~l~~~~~~~~~l~~~~~i~~iViDE 135 (470)
T TIGR00614 110 EKCSASNRLLQTLEERKGITLIAVDE 135 (470)
T ss_pred HHHcCchhHHHHHHhcCCcCEEEEeC
Confidence 7544332 334555555543
No 179
>PRK14701 reverse gyrase; Provisional
Probab=70.39 E-value=25 Score=42.30 Aligned_cols=81 Identities=10% Similarity=0.146 Sum_probs=58.6
Q ss_pred ccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHh------cCCceEeccCCcCHHHHHHHHHHHhCCCCce
Q psy1089 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVL------ENYNYYRLHGSIRNEERNDAVQQFNGSTEWG 294 (404)
Q Consensus 221 ~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~------~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~ 294 (404)
...|||.....-+...+...|.++||.+.....+.-+...|+. .++.+..++|+++..++...+..+.++. ..
T Consensus 102 PTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~-~d 180 (1638)
T PRK14701 102 PTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGD-FD 180 (1638)
T ss_pred cCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCC-CC
Confidence 4568999853333333334678999999998887777776654 2567788999999999998898888763 56
Q ss_pred EEEeeccc
Q psy1089 295 VFLLSTRA 302 (404)
Q Consensus 295 vlLis~~a 302 (404)
+++.++..
T Consensus 181 ILV~TPgr 188 (1638)
T PRK14701 181 ILVTTAQF 188 (1638)
T ss_pred EEEECCch
Confidence 77776653
No 180
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=67.98 E-value=32 Score=25.15 Aligned_cols=59 Identities=8% Similarity=0.073 Sum_probs=39.9
Q ss_pred eEEEEec-chHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecc
Q psy1089 243 KTLVFST-MVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTR 301 (404)
Q Consensus 243 KvlIFs~-~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~ 301 (404)
|+.||+. .-.........|...|+++..++-....+.++...........++++++...
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~ 60 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDV 60 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCE
Confidence 3566764 3344677788889999999988877776667766665554324666666644
No 181
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=67.62 E-value=97 Score=32.19 Aligned_cols=213 Identities=15% Similarity=0.186 Sum_probs=119.8
Q ss_pred hHHHHHHHHHHHhCCCCccccCCcccCCCcccccccccccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHH
Q psy1089 183 KMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCV 262 (404)
Q Consensus 183 ~l~~~l~~Lr~ic~hP~L~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~ 262 (404)
++...+..+++.+.+..+...... ...........++..|+.+..+.+.+..+....-.|+|..++-.--+.+++++.
T Consensus 108 ~~~~L~~~v~ral~~~~~~~e~~~--~~~~~~~~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH 185 (464)
T COG2204 108 DLDRLLAIVERALELRELQRENRR--SLKRAKSLGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIH 185 (464)
T ss_pred CHHHHHHHHHHHHHHhhhhhhhhh--hhhccccccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHH
Confidence 345555556666665444322111 000111234567889999999999999999999999999999888888888886
Q ss_pred hc----CCceEecc-CCcCHHHHHHHHHHHhCCCCceEEEeeccccc--cCCCCCCCCEEEEecCCCCchhHHHH-----
Q psy1089 263 LE----NYNYYRLH-GSIRNEERNDAVQQFNGSTEWGVFLLSTRAGG--QGLNLTAADTCILYDSDWNPQVDIQA----- 330 (404)
Q Consensus 263 ~~----gi~~~~i~-G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g--~GlnL~~a~~VI~~d~~wnp~~~~Qa----- 330 (404)
.. +-+|+.++ |.+|.+--+.-+-....|. | |.+.. .|.==.+-.=.+|+|---+-....|+
T Consensus 186 ~~S~R~~~PFVavNcaAip~~l~ESELFGhekGA----F---TGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRv 258 (464)
T COG2204 186 QASPRAKGPFIAVNCAAIPENLLESELFGHEKGA----F---TGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRV 258 (464)
T ss_pred hhCcccCCCceeeecccCCHHHHHHHhhcccccC----c---CCcccccCcceeEcCCceEEeeccccCCHHHHHHHHHH
Confidence 44 34677765 7777654443332222221 0 01111 11111111123555544444444442
Q ss_pred --HHhhhccCCCCcEEE-EEEEe-----------CCCHHHHHHHHHhcCCccccchh--------hhcccccccccccCc
Q psy1089 331 --EARCHRIGQTKPVCI-YRLVS-----------HSTYQVHLFTIDSSGSVSWSSQS--------VKEKLPIGFMCVTGS 388 (404)
Q Consensus 331 --~gR~~R~Gq~~~V~V-y~Li~-----------~~TiEe~i~~~~~~K~~~~~~~~--------~~~~l~~~~~~~~~~ 388 (404)
.+-+-|.|..+++.| .|+|+ .|.+-|.+|-++.-=...+..+. --+++...+-...+.
T Consensus 259 Lqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~ 338 (464)
T COG2204 259 LQEREFERVGGNKPIKVDVRIIAATNRDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGR 338 (464)
T ss_pred HHcCeeEecCCCcccceeeEEEeecCcCHHHHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCC
Confidence 355667888777655 45554 57788999998764322222211 122222222222335
Q ss_pred ceecccHHHH--HhhhcC
Q psy1089 389 FLKSSSFFTY--LQTYVW 404 (404)
Q Consensus 389 ~~~~~~~~~~--~~~~~~ 404 (404)
..+.+|.+.+ |+.|-|
T Consensus 339 ~~~~~s~~a~~~L~~y~W 356 (464)
T COG2204 339 PPKGFSPEALAALLAYDW 356 (464)
T ss_pred CCCCCCHHHHHHHHhCCC
Confidence 6667777765 777877
No 182
>PF08469 NPHI_C: Nucleoside triphosphatase I C-terminal; InterPro: IPR013676 This viral domain is found to the C terminus of Poxvirus nucleoside triphosphatase phosphohydrolase I (NPH I) [] together with the helicase conserved C-terminal domain (IPR001650 from INTERPRO). ; GO: 0005524 ATP binding, 0017111 nucleoside-triphosphatase activity, 0006351 transcription, DNA-dependent
Probab=66.76 E-value=3.7 Score=35.18 Aligned_cols=49 Identities=18% Similarity=0.108 Sum_probs=36.3
Q ss_pred CCcEEEEEEEeC-----CCHHHHHHHHHhcCCccccchhhhcccccccccccCcceecccHHHHHhhh
Q psy1089 340 TKPVCIYRLVSH-----STYQVHLFTIDSSGSVSWSSQSVKEKLPIGFMCVTGSFLKSSSFFTYLQTY 402 (404)
Q Consensus 340 ~~~V~Vy~Li~~-----~TiEe~i~~~~~~K~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 402 (404)
.+-|.||.++++ -|+||.+++..+.|+. -.+.-..++|..|+|-+...|
T Consensus 8 rRYVNVhFIiAr~~ng~~sVDedlldiIk~Ksk--------------ef~qLf~vlK~sSIEwI~~~~ 61 (148)
T PF08469_consen 8 RRYVNVHFIIARLSNGRPSVDEDLLDIIKDKSK--------------EFNQLFKVLKESSIEWIYENY 61 (148)
T ss_pred ceEEEEEEEEEEcCCCCcchHHHHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHhC
Confidence 356999999983 4799999999999862 223334577888888777665
No 183
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=66.12 E-value=35 Score=39.71 Aligned_cols=82 Identities=9% Similarity=0.120 Sum_probs=59.1
Q ss_pred ccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHH----hcCCceE---eccCCcCHHHHHHHHHHHhCCCCc
Q psy1089 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCV----LENYNYY---RLHGSIRNEERNDAVQQFNGSTEW 293 (404)
Q Consensus 221 ~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~----~~gi~~~---~i~G~~~~~~R~~~i~~F~~~~~~ 293 (404)
...|||..+..-++..+...+.+++|.+.....+.-+...+. ..|+... .++|+++..++...+..+.++. .
T Consensus 101 pTGsGKT~f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~-~ 179 (1171)
T TIGR01054 101 PTGVGKTTFGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGD-F 179 (1171)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCC-C
Confidence 356999986665555555568899999999887776666554 3355543 4799999999988888888763 5
Q ss_pred eEEEeecccc
Q psy1089 294 GVFLLSTRAG 303 (404)
Q Consensus 294 ~vlLis~~a~ 303 (404)
.+++.++...
T Consensus 180 dIlV~Tp~rL 189 (1171)
T TIGR01054 180 DILITTTMFL 189 (1171)
T ss_pred CEEEECHHHH
Confidence 6777776543
No 184
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=65.31 E-value=46 Score=28.45 Aligned_cols=85 Identities=14% Similarity=0.125 Sum_probs=54.5
Q ss_pred eEEEEecchHHHHHHHHHHHhcCCce--EeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEecC
Q psy1089 243 KTLVFSTMVKVLNFIEELCVLENYNY--YRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDS 320 (404)
Q Consensus 243 KvlIFs~~~~~l~~L~~~L~~~gi~~--~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~d~ 320 (404)
.+=++||+-.+...+...+...|+.+ +.-.|....-.-.+.++-|.+++.++++++ +++.
T Consensus 3 ~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~dv~~~d~l~~~~~D~~t~~I~l------------------y~E~ 64 (138)
T PF13607_consen 3 GVALISQSGALGTAILDWAQDRGIGFSYVVSVGNEADVDFADLLEYLAEDPDTRVIVL------------------YLEG 64 (138)
T ss_dssp SEEEEES-HHHHHHHHHHHHHTT-EESEEEE-TT-SSS-HHHHHHHHCT-SS--EEEE------------------EES-
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCeeEEEEeCccccCCHHHHHHHHhcCCCCCEEEE------------------EccC
Confidence 46789999999998888888776654 555676665567889999999988887754 4555
Q ss_pred CCCchhHHHHHHhhhccCCCCcEEEEEE
Q psy1089 321 DWNPQVDIQAEARCHRIGQTKPVCIYRL 348 (404)
Q Consensus 321 ~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~L 348 (404)
--||..+..+..|+.|. |+|-+|+-
T Consensus 65 ~~d~~~f~~~~~~a~~~---KPVv~lk~ 89 (138)
T PF13607_consen 65 IGDGRRFLEAARRAARR---KPVVVLKA 89 (138)
T ss_dssp -S-HHHHHHHHHHHCCC---S-EEEEE-
T ss_pred CCCHHHHHHHHHHHhcC---CCEEEEeC
Confidence 55788888887777654 77777754
No 185
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=63.70 E-value=43 Score=26.75 Aligned_cols=98 Identities=12% Similarity=0.065 Sum_probs=59.3
Q ss_pred cCCcHHHHHHHHHHHhhh--CCCeEEEEecchHHHHHHHHHHHhc---CCceEeccCCcCHHHHHHHHHHHhCCCCceEE
Q psy1089 222 SSSGKMIVLNQLLHKLKQ--TNHKTLVFSTMVKVLNFIEELCVLE---NYNYYRLHGSIRNEERNDAVQQFNGSTEWGVF 296 (404)
Q Consensus 222 ~~S~Kl~~L~~ll~~l~~--~~~KvlIFs~~~~~l~~L~~~L~~~---gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vl 296 (404)
..+||-..+..++..... ...+++|++......+.....+... +..+..+++........ .... ....++
T Consensus 9 ~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~i~ 83 (144)
T cd00046 9 TGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE---KLLS--GKTDIV 83 (144)
T ss_pred CCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH---HHhc--CCCCEE
Confidence 358999888888877654 5679999999988887776666533 36777777765544333 1112 235566
Q ss_pred EeeccccccCCCC----CCCCEEEEecCCCCc
Q psy1089 297 LLSTRAGGQGLNL----TAADTCILYDSDWNP 324 (404)
Q Consensus 297 Lis~~a~g~GlnL----~~a~~VI~~d~~wnp 324 (404)
+.+.......... .....+|++|-....
T Consensus 84 i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~ 115 (144)
T cd00046 84 VGTPGRLLDELERLKLSLKKLDLLILDEAHRL 115 (144)
T ss_pred EECcHHHHHHHHcCCcchhcCCEEEEeCHHHH
Confidence 6666644433322 223445556644333
No 186
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=63.41 E-value=41 Score=26.14 Aligned_cols=60 Identities=5% Similarity=0.060 Sum_probs=39.1
Q ss_pred CCeEEEEec------chHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecc
Q psy1089 241 NHKTLVFST------MVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTR 301 (404)
Q Consensus 241 ~~KvlIFs~------~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~ 301 (404)
+++|+||+. +-.....+.+.|...|++|..++=....+.+..+.. .......+++++..+
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~-~~g~~tvP~vfi~g~ 72 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKE-YSNWPTFPQLYVNGE 72 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHH-HhCCCCCCEEEECCE
Confidence 579999986 445677888899999999988875444444444443 333334555665533
No 187
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=63.08 E-value=41 Score=26.67 Aligned_cols=61 Identities=5% Similarity=-0.062 Sum_probs=40.3
Q ss_pred CCCeEEEEec------chHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecc
Q psy1089 240 TNHKTLVFST------MVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTR 301 (404)
Q Consensus 240 ~~~KvlIFs~------~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~ 301 (404)
..++|+||+. +-.......+.|...|++|..++=....+.+..+...... ...+.+++...
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~-~tvP~vfi~g~ 76 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNW-PTIPQLYVKGE 76 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCC-CCCCEEEECCE
Confidence 3579999975 3455678888999999999888755556566665544433 34555555533
No 188
>PF13245 AAA_19: Part of AAA domain
Probab=62.73 E-value=18 Score=27.47 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=34.2
Q ss_pred CCcHHHHHHHHHHHhhhC----CCeEEEEecchHHHHHHHHHH
Q psy1089 223 SSGKMIVLNQLLHKLKQT----NHKTLVFSTMVKVLNFIEELC 261 (404)
Q Consensus 223 ~S~Kl~~L~~ll~~l~~~----~~KvlIFs~~~~~l~~L~~~L 261 (404)
.|||-..+..++..+... +++++|.+......+.|.+.|
T Consensus 20 GtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 20 GTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 489999999999888755 889999999999999998887
No 189
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=62.02 E-value=95 Score=32.45 Aligned_cols=133 Identities=16% Similarity=0.172 Sum_probs=80.2
Q ss_pred CcHHHHHHHHHH-HhhhCCCeEEEEecchHHHH-HHHHHHHhcCC---ceEeccCCcCHHHHHHHHHHHhCCCCceEEEe
Q psy1089 224 SGKMIVLNQLLH-KLKQTNHKTLVFSTMVKVLN-FIEELCVLENY---NYYRLHGSIRNEERNDAVQQFNGSTEWGVFLL 298 (404)
Q Consensus 224 S~Kl~~L~~ll~-~l~~~~~KvlIFs~~~~~l~-~L~~~L~~~gi---~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLi 298 (404)
=||..+..-++. .+...+.|+|+.+...-.+. ..+.+.+..|+ .++.++|.+++++|... |.+ .+|++.
T Consensus 40 LGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~---w~~---~kVfva 113 (542)
T COG1111 40 LGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREEL---WAK---KKVFVA 113 (542)
T ss_pred ccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHH---Hhh---CCEEEe
Confidence 477765554444 44555568888887655433 33333344455 46799999999998765 444 357777
Q ss_pred ecccc-----ccCCCCCCCCEEEEecCCCCchhH--HHHHHhhhccCCCCcEEEEEEE-eCCCHHHHHHHHHhc
Q psy1089 299 STRAG-----GQGLNLTAADTCILYDSDWNPQVD--IQAEARCHRIGQTKPVCIYRLV-SHSTYQVHLFTIDSS 364 (404)
Q Consensus 299 s~~a~-----g~GlnL~~a~~VI~~d~~wnp~~~--~Qa~gR~~R~Gq~~~V~Vy~Li-~~~TiEe~i~~~~~~ 364 (404)
++++. +-=||+..+.++||=+-+---..| .+-.-...| +.+...|.-|- ++||=+|.|.+.+++
T Consensus 114 TPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~--~~k~~~ilgLTASPGs~~ekI~eV~~n 185 (542)
T COG1111 114 TPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLR--SAKNPLILGLTASPGSDLEKIQEVVEN 185 (542)
T ss_pred ccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHH--hccCceEEEEecCCCCCHHHHHHHHHh
Confidence 77763 234688899988884433222221 122222222 23445666665 479999999999875
No 190
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=61.05 E-value=47 Score=37.91 Aligned_cols=95 Identities=17% Similarity=0.109 Sum_probs=56.6
Q ss_pred EEEecchHHHHHHHHHH---Hhc--CCceEeccCCcCHHHHHHHHHH---------------------Hh-CCC--CceE
Q psy1089 245 LVFSTMVKVLNFIEELC---VLE--NYNYYRLHGSIRNEERNDAVQQ---------------------FN-GST--EWGV 295 (404)
Q Consensus 245 lIFs~~~~~l~~L~~~L---~~~--gi~~~~i~G~~~~~~R~~~i~~---------------------F~-~~~--~~~v 295 (404)
|.+++-...++.-...+ ... .+.++.||+..+...|..+-.+ +- +.+ +..+
T Consensus 761 iR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~ 840 (1110)
T TIGR02562 761 IRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLF 840 (1110)
T ss_pred EEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCe
Confidence 55565554444333333 222 3457788888766665542211 11 211 4668
Q ss_pred EEeeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCc
Q psy1089 296 FLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKP 342 (404)
Q Consensus 296 lLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~ 342 (404)
++++|.+...|+|+. ++.+|- |+. .....+|+.||+.|-|+...
T Consensus 841 i~v~Tqv~E~g~D~d-fd~~~~-~~~-~~~sliQ~aGR~~R~~~~~~ 884 (1110)
T TIGR02562 841 IVLATPVEEVGRDHD-YDWAIA-DPS-SMRSIIQLAGRVNRHRLEKV 884 (1110)
T ss_pred EEEEeeeEEEEeccc-CCeeee-ccC-cHHHHHHHhhcccccccCCC
Confidence 999999999999875 333332 322 33467899999999997643
No 191
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=59.62 E-value=20 Score=40.67 Aligned_cols=81 Identities=15% Similarity=0.094 Sum_probs=60.1
Q ss_pred eccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEe----c----CCCCchhHHHHHHhhhccCCCC
Q psy1089 270 RLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILY----D----SDWNPQVDIQAEARCHRIGQTK 341 (404)
Q Consensus 270 ~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~----d----~~wnp~~~~Qa~gR~~R~Gq~~ 341 (404)
.-|+++=+.-|..+-.-|+.|- .+ +++.|.+.+.|+|.+.=+.|+-- | .+-+|..|.|--||+||-|+..
T Consensus 449 vHH~GlLP~~K~~vE~Lfq~GL-vk-vvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~ 526 (1041)
T COG4581 449 VHHAGLLPAIKELVEELFQEGL-VK-VVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDV 526 (1041)
T ss_pred hhccccchHHHHHHHHHHhccc-ee-EEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccc
Confidence 4577888888888888899983 44 56778999999999866554432 2 3456889999999999999987
Q ss_pred cEEEEEEEeCC
Q psy1089 342 PVCIYRLVSHS 352 (404)
Q Consensus 342 ~V~Vy~Li~~~ 352 (404)
.-+|.-.....
T Consensus 527 ~G~vI~~~~~~ 537 (1041)
T COG4581 527 LGTVIVIEPPF 537 (1041)
T ss_pred cceEEEecCCC
Confidence 66665554433
No 192
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=59.38 E-value=22 Score=30.52 Aligned_cols=40 Identities=18% Similarity=0.117 Sum_probs=36.5
Q ss_pred cCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHH
Q psy1089 222 SSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELC 261 (404)
Q Consensus 222 ~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L 261 (404)
..+++...+..|+.+....|.|++|+|.....++.|-+.|
T Consensus 10 ~~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~L 49 (142)
T PRK05728 10 TLSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEAL 49 (142)
T ss_pred CchhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh
Confidence 4577999999999999999999999999999999998888
No 193
>PRK13766 Hef nuclease; Provisional
Probab=59.15 E-value=1.7e+02 Score=32.37 Aligned_cols=136 Identities=11% Similarity=0.075 Sum_probs=74.2
Q ss_pred cCCcHHHHHHHHHHHh-hhCCCeEEEEecchHHHHHHHHHHHh-cCC---ceEeccCCcCHHHHHHHHHHHhCCCCceEE
Q psy1089 222 SSSGKMIVLNQLLHKL-KQTNHKTLVFSTMVKVLNFIEELCVL-ENY---NYYRLHGSIRNEERNDAVQQFNGSTEWGVF 296 (404)
Q Consensus 222 ~~S~Kl~~L~~ll~~l-~~~~~KvlIFs~~~~~l~~L~~~L~~-~gi---~~~~i~G~~~~~~R~~~i~~F~~~~~~~vl 296 (404)
..+||.....-++... ...+.++||.+.......-....++. .++ .+..++|..+..+|..... . ..|+
T Consensus 38 tG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~---~---~~ii 111 (773)
T PRK13766 38 TGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWE---K---AKVI 111 (773)
T ss_pred CCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHh---C---CCEE
Confidence 3589987544444333 34678999999987776555555543 233 6788999999887765443 2 3567
Q ss_pred Eeeccccc-----cCCCCCCCCEEEEecCCCCchhH-HHHHHhhhccCCCCcEEEEEEE-eCCCHHHHHHHHHhc
Q psy1089 297 LLSTRAGG-----QGLNLTAADTCILYDSDWNPQVD-IQAEARCHRIGQTKPVCIYRLV-SHSTYQVHLFTIDSS 364 (404)
Q Consensus 297 Lis~~a~g-----~GlnL~~a~~VI~~d~~wnp~~~-~Qa~gR~~R~Gq~~~V~Vy~Li-~~~TiEe~i~~~~~~ 364 (404)
++++.... .-+++...+.||+=+-+--...+ ...+.+..+..... ..+.-|- ++++.++.+.+.+.+
T Consensus 112 v~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~-~~il~lTaTP~~~~~~i~~~~~~ 185 (773)
T PRK13766 112 VATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKN-PLVLGLTASPGSDEEKIKEVCEN 185 (773)
T ss_pred EECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCC-CEEEEEEcCCCCCHHHHHHHHHh
Confidence 76665432 23455666766665544221111 12233444433332 2233332 234455666655543
No 194
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=58.73 E-value=25 Score=30.80 Aligned_cols=40 Identities=10% Similarity=0.105 Sum_probs=37.4
Q ss_pred cCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHH
Q psy1089 222 SSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELC 261 (404)
Q Consensus 222 ~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L 261 (404)
..+++...+..|+++....|.|++|.|.....++.|-+.|
T Consensus 10 ~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~L 49 (154)
T PRK06646 10 SDELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNL 49 (154)
T ss_pred CCChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh
Confidence 5689999999999999999999999999999999998888
No 195
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=58.66 E-value=41 Score=32.98 Aligned_cols=60 Identities=15% Similarity=0.122 Sum_probs=51.3
Q ss_pred CCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCC-----CCceEEEee
Q psy1089 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGS-----TEWGVFLLS 299 (404)
Q Consensus 240 ~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~-----~~~~vlLis 299 (404)
+.++|||......+-...+..|+..|+++.|+-|+...+--.++...|+++ ++..+++++
T Consensus 75 npd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~~~~yp~af~n~kvvvv~ 139 (337)
T COG2247 75 NPDLVLIIGGPIAVSPNYENALKSLGITVKRIGGANRYETAEKVAKFFREDYPNAFKNVKVVVVY 139 (337)
T ss_pred CCceEEEECCCCcCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHHHhhchhhhcCeEEEEEe
Confidence 578999999999999999999999999999999999888888888888632 245677766
No 196
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=56.29 E-value=1.4e+02 Score=26.29 Aligned_cols=91 Identities=16% Similarity=0.194 Sum_probs=55.8
Q ss_pred cCCcHHHH-HHHHHHHhhh----CCCeEEEEecchHHHHHHHHHH----HhcCCceEeccCCcCHHHHHHHHHHHhCCCC
Q psy1089 222 SSSGKMIV-LNQLLHKLKQ----TNHKTLVFSTMVKVLNFIEELC----VLENYNYYRLHGSIRNEERNDAVQQFNGSTE 292 (404)
Q Consensus 222 ~~S~Kl~~-L~~ll~~l~~----~~~KvlIFs~~~~~l~~L~~~L----~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~ 292 (404)
..+||... +..++..+.. .+.++||.+.....+.-....+ ...++.+..++|+.+..+..... .. +
T Consensus 45 TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~ 119 (203)
T cd00268 45 TGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKL---KR--G 119 (203)
T ss_pred CCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh---cC--C
Confidence 45889654 5566655543 3568999998877666554444 34578888899998876554433 22 3
Q ss_pred ceEEEeecccc-----ccCCCCCCCCEEEE
Q psy1089 293 WGVFLLSTRAG-----GQGLNLTAADTCIL 317 (404)
Q Consensus 293 ~~vlLis~~a~-----g~GlnL~~a~~VI~ 317 (404)
+.+++.++... ..-.++...+.+|+
T Consensus 120 ~~iiv~T~~~l~~~l~~~~~~~~~l~~lIv 149 (203)
T cd00268 120 PHIVVATPGRLLDLLERGKLDLSKVKYLVL 149 (203)
T ss_pred CCEEEEChHHHHHHHHcCCCChhhCCEEEE
Confidence 56677765321 11245566666654
No 197
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=56.20 E-value=69 Score=36.82 Aligned_cols=93 Identities=11% Similarity=0.044 Sum_probs=76.3
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEecchHH----HHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEee
Q psy1089 224 SGKMIVLNQLLHKLKQTNHKTLVFSTMVKV----LNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLS 299 (404)
Q Consensus 224 S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~----l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis 299 (404)
-||.++.+...-.....|+.|.|.+..+-. .+.+.+.+...++++..+.-=.+.++...+++.-.+|. +.+++.+
T Consensus 626 FGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~-vDIvIGT 704 (1139)
T COG1197 626 FGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGK-VDIVIGT 704 (1139)
T ss_pred CcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCC-ccEEEec
Confidence 589998888887777789999999987544 34556666677888888998899999999999999995 7888888
Q ss_pred ccccccCCCCCCCCEEEE
Q psy1089 300 TRAGGQGLNLTAADTCIL 317 (404)
Q Consensus 300 ~~a~g~GlnL~~a~~VI~ 317 (404)
-+..+.++-+.+.--+|+
T Consensus 705 HrLL~kdv~FkdLGLlII 722 (1139)
T COG1197 705 HRLLSKDVKFKDLGLLII 722 (1139)
T ss_pred hHhhCCCcEEecCCeEEE
Confidence 888888888877777776
No 198
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=55.34 E-value=1.1e+02 Score=26.94 Aligned_cols=71 Identities=15% Similarity=0.213 Sum_probs=54.7
Q ss_pred HHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhc--CCceE-eccCCcCHHHHHHHHHHHhCCCCceEEEee
Q psy1089 228 IVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLE--NYNYY-RLHGSIRNEERNDAVQQFNGSTEWGVFLLS 299 (404)
Q Consensus 228 ~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~--gi~~~-~i~G~~~~~~R~~~i~~F~~~~~~~vlLis 299 (404)
..+..++......+.++-++......++.+...|+.. |+.++ ..+|-.+..+...+++.-+... ..++++.
T Consensus 35 dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~-pdiv~vg 108 (172)
T PF03808_consen 35 DLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASG-PDIVFVG 108 (172)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcC-CCEEEEE
Confidence 4666777766677889999999999999999998754 77766 4667778888999999988764 4556654
No 199
>KOG0352|consensus
Probab=54.10 E-value=30 Score=35.40 Aligned_cols=134 Identities=14% Similarity=0.156 Sum_probs=88.4
Q ss_pred cCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCC-CceEEEeec
Q psy1089 222 SSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGST-EWGVFLLST 300 (404)
Q Consensus 222 ~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~-~~~vlLis~ 300 (404)
..+|| -|.--|..+...| -+||||.....+.-=-++|....+++..+++.++..+|.+++.+..... .+++|-|++
T Consensus 45 TGaGK--SLCyQLPaL~~~g-ITIV~SPLiALIkDQiDHL~~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITP 121 (641)
T KOG0352|consen 45 TGAGK--SLCYQLPALVHGG-ITIVISPLIALIKDQIDHLKRLKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITP 121 (641)
T ss_pred CCCch--hhhhhchHHHhCC-eEEEehHHHHHHHHHHHHHHhcCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEch
Confidence 34555 3555566666555 8899998877776666788888999999999999999999999987654 788888888
Q ss_pred cccccC-CC-----CC-----------CCCEEEEecCCCCchhHHHHHHhhhccCCC----CcEEEEEEEeCCC--HHHH
Q psy1089 301 RAGGQG-LN-----LT-----------AADTCILYDSDWNPQVDIQAEARCHRIGQT----KPVCIYRLVSHST--YQVH 357 (404)
Q Consensus 301 ~a~g~G-ln-----L~-----------~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~----~~V~Vy~Li~~~T--iEe~ 357 (404)
..++.. .. |. .|+.|-.+..++.|.-. |.|.- ..|...-|.+.-| +.|.
T Consensus 122 E~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL--------~LG~LRS~~~~vpwvALTATA~~~VqED 193 (641)
T KOG0352|consen 122 EGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYL--------TLGSLRSVCPGVPWVALTATANAKVQED 193 (641)
T ss_pred hhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchh--------hhhhHHhhCCCCceEEeecccChhHHHH
Confidence 765533 21 11 23333333444444322 23332 2356666666555 6789
Q ss_pred HHHHHhcCC
Q psy1089 358 LFTIDSSGS 366 (404)
Q Consensus 358 i~~~~~~K~ 366 (404)
||..+.-++
T Consensus 194 i~~qL~L~~ 202 (641)
T KOG0352|consen 194 IAFQLKLRN 202 (641)
T ss_pred HHHHHhhcC
Confidence 998866553
No 200
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=53.78 E-value=3e+02 Score=29.30 Aligned_cols=79 Identities=11% Similarity=0.138 Sum_probs=59.0
Q ss_pred ccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeec
Q psy1089 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLST 300 (404)
Q Consensus 221 ~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~ 300 (404)
...+||-... ++..+. .+..+||.+.....+.-....|+..|+++..++|+.+..++..+......++ ..++++++
T Consensus 36 PTG~GKTl~y--~lpal~-~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~-~~il~~tp 111 (591)
T TIGR01389 36 PTGGGKSLCY--QVPALL-LKGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGE-LKLLYVAP 111 (591)
T ss_pred CCCccHhHHH--HHHHHH-cCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCC-CCEEEECh
Confidence 3458887543 233333 3456888899888877777788889999999999999999999888888774 67777776
Q ss_pred ccc
Q psy1089 301 RAG 303 (404)
Q Consensus 301 ~a~ 303 (404)
...
T Consensus 112 e~l 114 (591)
T TIGR01389 112 ERL 114 (591)
T ss_pred hHh
Confidence 643
No 201
>PRK10824 glutaredoxin-4; Provisional
Probab=53.46 E-value=86 Score=25.97 Aligned_cols=60 Identities=3% Similarity=-0.002 Sum_probs=38.1
Q ss_pred CCeEEEEec------chHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecc
Q psy1089 241 NHKTLVFST------MVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTR 301 (404)
Q Consensus 241 ~~KvlIFs~------~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~ 301 (404)
..+|+||+. +-.........|...|+++..++=....+.|. .+..+...+.+.-+++...
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~-~l~~~sg~~TVPQIFI~G~ 79 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRA-ELPKYANWPTFPQLWVDGE 79 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHH-HHHHHhCCCCCCeEEECCE
Confidence 479999987 34567788888988898887665444444344 4555554444444444433
No 202
>KOG0389|consensus
Probab=51.85 E-value=3.8 Score=44.46 Aligned_cols=74 Identities=27% Similarity=0.367 Sum_probs=46.9
Q ss_pred hhhhccccCCCCchhhhhhhhhccc-cCCCCCCCCCCcchhhhhhHHHh---hhh--hhhHH--HHHHHHHHHhCCCCcc
Q psy1089 130 MFDSMIERDDTSDTEVQVEDKIKVE-PCENSSNAQDVPSAEEKNVDEIL---HHV--NVKMT--NVTMVLRNIISHPYLI 201 (404)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~l~--~~l~~Lr~ic~hP~L~ 201 (404)
+.++++.|+.++++...++++..+. -|..+..+.+. +...++... ... .+... +.+|+||++++||.|.
T Consensus 619 im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~---Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~ 695 (941)
T KOG0389|consen 619 IMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQL---YDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLF 695 (941)
T ss_pred hhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHH---HHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHH
Confidence 6788888998888888888877764 56665444322 111111111 111 12233 4899999999999998
Q ss_pred ccCCc
Q psy1089 202 NKPYR 206 (404)
Q Consensus 202 ~~~~~ 206 (404)
+..+.
T Consensus 696 R~~Y~ 700 (941)
T KOG0389|consen 696 RSIYT 700 (941)
T ss_pred HHhcc
Confidence 87543
No 203
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=51.81 E-value=82 Score=35.82 Aligned_cols=81 Identities=9% Similarity=0.176 Sum_probs=55.1
Q ss_pred CCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHH----HhcC-CceEe-ccCCcCHHHHHHHHHHHhCCCCceEE
Q psy1089 223 SSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELC----VLEN-YNYYR-LHGSIRNEERNDAVQQFNGSTEWGVF 296 (404)
Q Consensus 223 ~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L----~~~g-i~~~~-i~G~~~~~~R~~~i~~F~~~~~~~vl 296 (404)
..||-.+..-+-.-+...|+|++|....+..+.-..+.| ...| ..... +||.++.++++.++++|.+|+ ..++
T Consensus 107 GvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gd-fdIl 185 (1187)
T COG1110 107 GVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGD-FDIL 185 (1187)
T ss_pred CCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCC-ccEE
Confidence 468887766655555667788877776655544444433 3333 33322 899999999999999999995 6677
Q ss_pred Eeeccccc
Q psy1089 297 LLSTRAGG 304 (404)
Q Consensus 297 Lis~~a~g 304 (404)
+.++.-..
T Consensus 186 itTs~FL~ 193 (1187)
T COG1110 186 ITTSQFLS 193 (1187)
T ss_pred EEeHHHHH
Confidence 77665443
No 204
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=51.47 E-value=24 Score=27.11 Aligned_cols=38 Identities=8% Similarity=0.192 Sum_probs=30.4
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcC
Q psy1089 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIR 276 (404)
Q Consensus 239 ~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~ 276 (404)
..++++++||............|+..|+.+..++|+.+
T Consensus 49 ~~~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 49 PKDKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYK 86 (90)
T ss_pred CCCCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHH
Confidence 45678999998766667777888999998888999874
No 205
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=51.31 E-value=1.5e+02 Score=26.03 Aligned_cols=71 Identities=17% Similarity=0.231 Sum_probs=53.9
Q ss_pred HHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHh--cCCceEe-ccCCcCHHHHHHHHHHHhCCCCceEEEee
Q psy1089 228 IVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVL--ENYNYYR-LHGSIRNEERNDAVQQFNGSTEWGVFLLS 299 (404)
Q Consensus 228 ~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~--~gi~~~~-i~G~~~~~~R~~~i~~F~~~~~~~vlLis 299 (404)
..+..+++.....+.++-++.....+++.+.+.|+. .|+.++- .+|.....+...+++..+... ..++++.
T Consensus 33 dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~-pdiv~vg 106 (171)
T cd06533 33 DLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASG-ADILFVG 106 (171)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcC-CCEEEEE
Confidence 356677777667788999999999999998888864 4777766 688888877777888877764 5556654
No 206
>KOG1133|consensus
Probab=51.17 E-value=2.3e+02 Score=31.00 Aligned_cols=96 Identities=10% Similarity=0.116 Sum_probs=58.9
Q ss_pred cHHHHHHHHHHHhhh-CCCeEEEEecchHHHHHHHHHHHhcCCc-------eEeccCCcCHHHHHHHHHHHhCCC--Cce
Q psy1089 225 GKMIVLNQLLHKLKQ-TNHKTLVFSTMVKVLNFIEELCVLENYN-------YYRLHGSIRNEERNDAVQQFNGST--EWG 294 (404)
Q Consensus 225 ~Kl~~L~~ll~~l~~-~~~KvlIFs~~~~~l~~L~~~L~~~gi~-------~~~i~G~~~~~~R~~~i~~F~~~~--~~~ 294 (404)
.-+..|-..+..+.. -..-||+|..+-..+..+.......|+- -+.+....+ -..+++.|...- +..
T Consensus 612 ~~l~~l~~~~~nL~~~VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~G 688 (821)
T KOG1133|consen 612 EMIKDLGSSISNLSNAVPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRG 688 (821)
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCC
Confidence 334445555554432 2367999999999999999888876652 122222222 345666775432 222
Q ss_pred EEEee--ccccccCCCCC--CCCEEEEecCCCC
Q psy1089 295 VFLLS--TRAGGQGLNLT--AADTCILYDSDWN 323 (404)
Q Consensus 295 vlLis--~~a~g~GlnL~--~a~~VI~~d~~wn 323 (404)
.+|++ ..-.++|||+. -+..|+...+|+-
T Consensus 689 aiLlaVVGGKlSEGINF~D~LgRaVvvVGlPyP 721 (821)
T KOG1133|consen 689 AILLAVVGGKLSEGINFSDDLGRAVVVVGLPYP 721 (821)
T ss_pred eEEEEEeccccccccccccccccEEEEeecCCC
Confidence 34444 44567999997 5788888888876
No 207
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=50.09 E-value=92 Score=31.96 Aligned_cols=93 Identities=19% Similarity=0.188 Sum_probs=59.6
Q ss_pred cCCcHHHH-HHHHHHHhhhC--CCeEEEEecchHHHHHHHHHHHh-----cCCceEeccCCcCHHHHHHHHHHHhCCCCc
Q psy1089 222 SSSGKMIV-LNQLLHKLKQT--NHKTLVFSTMVKVLNFIEELCVL-----ENYNYYRLHGSIRNEERNDAVQQFNGSTEW 293 (404)
Q Consensus 222 ~~S~Kl~~-L~~ll~~l~~~--~~KvlIFs~~~~~l~~L~~~L~~-----~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~ 293 (404)
..|||..+ +..++..+... +.++||.+.....+.-+.+.++. .++.+..++|+.+.......+ ..+ .
T Consensus 50 TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l---~~~--~ 124 (460)
T PRK11776 50 TGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSL---EHG--A 124 (460)
T ss_pred CCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHh---cCC--C
Confidence 45899865 45555554322 34789999998887777766653 267888899999876554433 333 5
Q ss_pred eEEEeecccc-----ccCCCCCCCCEEEEec
Q psy1089 294 GVFLLSTRAG-----GQGLNLTAADTCILYD 319 (404)
Q Consensus 294 ~vlLis~~a~-----g~GlnL~~a~~VI~~d 319 (404)
.+++.++... ...+++.....+|+=+
T Consensus 125 ~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDE 155 (460)
T PRK11776 125 HIIVGTPGRILDHLRKGTLDLDALNTLVLDE 155 (460)
T ss_pred CEEEEChHHHHHHHHcCCccHHHCCEEEEEC
Confidence 5666665432 1346677777777633
No 208
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=48.74 E-value=56 Score=33.21 Aligned_cols=89 Identities=10% Similarity=0.090 Sum_probs=57.2
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEec-chHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccc
Q psy1089 224 SGKMIVLNQLLHKLKQTNHKTLVFST-MVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRA 302 (404)
Q Consensus 224 S~Kl~~L~~ll~~l~~~~~KvlIFs~-~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a 302 (404)
|+-|.++.-.+..+.+.|..+|+... |-.+..++...++..|+.+..++..........+.. ++.
T Consensus 85 sSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~-----~~t--------- 150 (396)
T COG0626 85 SSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKE-----PNT--------- 150 (396)
T ss_pred cCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcc-----cCc---------
Confidence 55666776666667777888887765 777778888888888998887776665433322221 122
Q ss_pred cccCCCCCCCCEEEEecCCCCchhHHHHHHhhhcc
Q psy1089 303 GGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRI 337 (404)
Q Consensus 303 ~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~ 337 (404)
.+|+++.|-||....+=+.++-|+
T Consensus 151 -----------k~v~lEtPsNP~l~v~DI~~i~~~ 174 (396)
T COG0626 151 -----------KLVFLETPSNPLLEVPDIPAIARL 174 (396)
T ss_pred -----------eEEEEeCCCCcccccccHHHHHHH
Confidence 356677777777655544444443
No 209
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=47.41 E-value=36 Score=28.97 Aligned_cols=79 Identities=13% Similarity=-0.011 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcC----CceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccc
Q psy1089 227 MIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLEN----YNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRA 302 (404)
Q Consensus 227 l~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~g----i~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a 302 (404)
...+..++.+....|.+++|+|.....++.|-+.|=... ++......... ....|+|.....
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~~~--------------~~~PV~i~~~~~ 80 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGEPPA--------------ARQPVLITWDQE 80 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT-SST--------------T--SEEEE-TTS
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCCCCC--------------CCCeEEEecCcc
Confidence 589999999999999999999999999999999883221 22222221111 113455543221
Q ss_pred cccCCCCCCCCEEEEecCCC
Q psy1089 303 GGQGLNLTAADTCILYDSDW 322 (404)
Q Consensus 303 ~g~GlnL~~a~~VI~~d~~w 322 (404)
. -....++.+|+++..+
T Consensus 81 ~---~~~~~~~vLinL~~~~ 97 (137)
T PF04364_consen 81 A---NPNNHADVLINLSGEV 97 (137)
T ss_dssp -------S--SEEEE--SS-
T ss_pred c---CCCCCCCEEEECCCCC
Confidence 1 1234588999998887
No 210
>PTZ00062 glutaredoxin; Provisional
Probab=46.14 E-value=1.7e+02 Score=26.81 Aligned_cols=70 Identities=13% Similarity=0.210 Sum_probs=47.1
Q ss_pred HHHHHHHhhhCCCeEEEEec------chHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecc
Q psy1089 230 LNQLLHKLKQTNHKTLVFST------MVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTR 301 (404)
Q Consensus 230 L~~ll~~l~~~~~KvlIFs~------~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~ 301 (404)
+.+.+..+. ...+|+||+. +-.....+...|+..|++|..++=....+.|+. +..+...+.++.+.+..+
T Consensus 102 ~~~~v~~li-~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~-l~~~sg~~TvPqVfI~G~ 177 (204)
T PTZ00062 102 TVEKIERLI-RNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREE-LKVYSNWPTYPQLYVNGE 177 (204)
T ss_pred HHHHHHHHH-hcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHH-HHHHhCCCCCCeEEECCE
Confidence 444555544 3579999987 455677888999999999988876656555555 445555445566666644
No 211
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=45.51 E-value=53 Score=35.57 Aligned_cols=52 Identities=21% Similarity=0.222 Sum_probs=46.2
Q ss_pred CCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCC
Q psy1089 223 SSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGS 274 (404)
Q Consensus 223 ~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~ 274 (404)
.+||-..+..++..+...|.+|++.+.....++.|.+.|...++.++++.+.
T Consensus 183 GTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~~~~~vvRlg~~ 234 (637)
T TIGR00376 183 GTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLALCDQKIVRLGHP 234 (637)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHhCCCcEEEeCCc
Confidence 4899999999999988889999999999999999999998888888888654
No 212
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=45.35 E-value=78 Score=33.90 Aligned_cols=131 Identities=13% Similarity=0.098 Sum_probs=89.5
Q ss_pred HHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCC--
Q psy1089 230 LNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGL-- 307 (404)
Q Consensus 230 L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~Gl-- 307 (404)
|+--|..+...| -+||.|.....+..=.+.|+..|+.+..++++.+.++|..++.....+. .++|.+++......-
T Consensus 47 lCyQiPAll~~G-~TLVVSPLiSLM~DQV~~l~~~Gi~A~~lnS~l~~~e~~~v~~~l~~g~-~klLyisPErl~~~~f~ 124 (590)
T COG0514 47 LCYQIPALLLEG-LTLVVSPLISLMKDQVDQLEAAGIRAAYLNSTLSREERQQVLNQLKSGQ-LKLLYISPERLMSPRFL 124 (590)
T ss_pred hHhhhHHHhcCC-CEEEECchHHHHHHHHHHHHHcCceeehhhcccCHHHHHHHHHHHhcCc-eeEEEECchhhcChHHH
Confidence 444455555455 7889999888888777888999999999999999999999999999984 788888877543221
Q ss_pred --------C---CCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEE--EeCCCHHHHHHHHHhcCC
Q psy1089 308 --------N---LTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRL--VSHSTYQVHLFTIDSSGS 366 (404)
Q Consensus 308 --------n---L~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~L--i~~~TiEe~i~~~~~~K~ 366 (404)
. +..|++|--+..+|-|. ..+.|+.+..=. .+.|.-| .+...+.+.|.+.+.-+.
T Consensus 125 ~~L~~~~i~l~vIDEAHCiSqWGhdFRP~--Y~~lg~l~~~~~--~~p~~AlTATA~~~v~~DI~~~L~l~~ 192 (590)
T COG0514 125 ELLKRLPISLVAIDEAHCISQWGHDFRPD--YRRLGRLRAGLP--NPPVLALTATATPRVRDDIREQLGLQD 192 (590)
T ss_pred HHHHhCCCceEEechHHHHhhcCCccCHh--HHHHHHHHhhCC--CCCEEEEeCCCChHHHHHHHHHhcCCC
Confidence 1 13455555555556653 344555543222 4455555 455667788888876554
No 213
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=45.26 E-value=2.2e+02 Score=25.34 Aligned_cols=71 Identities=14% Similarity=0.248 Sum_probs=52.4
Q ss_pred HHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHh--cCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEee
Q psy1089 228 IVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVL--ENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLS 299 (404)
Q Consensus 228 ~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~--~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis 299 (404)
..+..++......+.++-++.....+++.+.+.|+. .|+.++-.+|-.+.++.+.+++.-+... ..++++.
T Consensus 35 dl~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~-~dil~Vg 107 (177)
T TIGR00696 35 DLMEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSG-AGIVFVG 107 (177)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcC-CCEEEEE
Confidence 466677776666778898999999999999888864 4777666688888877777777777653 4555554
No 214
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=44.86 E-value=52 Score=27.29 Aligned_cols=39 Identities=13% Similarity=0.067 Sum_probs=29.2
Q ss_pred hCCCeEEEEecc-hHHHHHHHHHHHhcCCceEeccCCcCH
Q psy1089 239 QTNHKTLVFSTM-VKVLNFIEELCVLENYNYYRLHGSIRN 277 (404)
Q Consensus 239 ~~~~KvlIFs~~-~~~l~~L~~~L~~~gi~~~~i~G~~~~ 277 (404)
..+.+++|||+. -.........|+..|+.+..++|+...
T Consensus 84 ~~~~~vvvyC~~~G~rs~~a~~~L~~~G~~v~~L~GG~~a 123 (128)
T cd01520 84 ERDPKLLIYCARGGMRSQSLAWLLESLGIDVPLLEGGYKA 123 (128)
T ss_pred CCCCeEEEEeCCCCccHHHHHHHHHHcCCceeEeCCcHHH
Confidence 456889999973 344455567888889998889998753
No 215
>PRK09401 reverse gyrase; Reviewed
Probab=44.24 E-value=1.4e+02 Score=34.97 Aligned_cols=96 Identities=10% Similarity=0.113 Sum_probs=62.0
Q ss_pred ccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhc----CCceEecc--CCcCHHHHHHHHHHHhCCCCce
Q psy1089 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLE----NYNYYRLH--GSIRNEERNDAVQQFNGSTEWG 294 (404)
Q Consensus 221 ~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~----gi~~~~i~--G~~~~~~R~~~i~~F~~~~~~~ 294 (404)
-..|||..++.-++..+...+.+++|.+.....+.-+...++.. ++.+..+. |+.+..++......+..+. ..
T Consensus 103 pTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~-~~ 181 (1176)
T PRK09401 103 PTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGD-FD 181 (1176)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCC-CC
Confidence 35699997666555555556889999999988877777766533 44544444 4455677888888888663 56
Q ss_pred EEEeecccccc---CCCCCCCCEEEE
Q psy1089 295 VFLLSTRAGGQ---GLNLTAADTCIL 317 (404)
Q Consensus 295 vlLis~~a~g~---GlnL~~a~~VI~ 317 (404)
+++.++..... .+.+...+.+|+
T Consensus 182 IlV~Tp~rL~~~~~~l~~~~~~~lVv 207 (1176)
T PRK09401 182 ILVTTSQFLSKNFDELPKKKFDFVFV 207 (1176)
T ss_pred EEEECHHHHHHHHHhccccccCEEEE
Confidence 77777654332 233334555554
No 216
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=43.86 E-value=1.7e+02 Score=29.75 Aligned_cols=91 Identities=12% Similarity=0.200 Sum_probs=55.8
Q ss_pred cCCcHHHH-HHHHHHHhhh------CCCeEEEEecchHHHHHHHHH----HHhcCCceEeccCCcCHHHHHHHHHHHhCC
Q psy1089 222 SSSGKMIV-LNQLLHKLKQ------TNHKTLVFSTMVKVLNFIEEL----CVLENYNYYRLHGSIRNEERNDAVQQFNGS 290 (404)
Q Consensus 222 ~~S~Kl~~-L~~ll~~l~~------~~~KvlIFs~~~~~l~~L~~~----L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~ 290 (404)
..+||-.. +..++..+.. .+.++||.+.....+.-+.+. ....++++..++|+.+...+...+ ..+
T Consensus 47 TGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l---~~~ 123 (434)
T PRK11192 47 TGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVF---SEN 123 (434)
T ss_pred CCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHh---cCC
Confidence 45899754 4444444321 235789999888766555443 345688999999999887665444 222
Q ss_pred CCceEEEeecccc-----ccCCCCCCCCEEEE
Q psy1089 291 TEWGVFLLSTRAG-----GQGLNLTAADTCIL 317 (404)
Q Consensus 291 ~~~~vlLis~~a~-----g~GlnL~~a~~VI~ 317 (404)
..|++.++... ...+++.....||+
T Consensus 124 --~~IlV~Tp~rl~~~~~~~~~~~~~v~~lVi 153 (434)
T PRK11192 124 --QDIVVATPGRLLQYIKEENFDCRAVETLIL 153 (434)
T ss_pred --CCEEEEChHHHHHHHHcCCcCcccCCEEEE
Confidence 45677665422 13455666666665
No 217
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=43.61 E-value=45 Score=33.24 Aligned_cols=61 Identities=16% Similarity=0.057 Sum_probs=51.8
Q ss_pred cccccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHH--hcCCceEeccCCcCHH
Q psy1089 218 ENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCV--LENYNYYRLHGSIRNE 278 (404)
Q Consensus 218 ~~~~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~--~~gi~~~~i~G~~~~~ 278 (404)
.+.+..+||.+++.+-+....+.|.+|.|-|...+++-.|...|+ ..+..+..++|..++.
T Consensus 121 v~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg~S~~~ 183 (441)
T COG4098 121 VWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYGDSDSY 183 (441)
T ss_pred EEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCCeeeEecCCchh
Confidence 445778999999999999999999999999999999888888886 3467888899887653
No 218
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=43.30 E-value=1.6e+02 Score=29.79 Aligned_cols=94 Identities=14% Similarity=0.152 Sum_probs=58.5
Q ss_pred ccCCcHHHH-HHHHHHHhhh---------CCCeEEEEecchHHHHHHHHHH----HhcCCceEeccCCcCHHHHHHHHHH
Q psy1089 221 VSSSGKMIV-LNQLLHKLKQ---------TNHKTLVFSTMVKVLNFIEELC----VLENYNYYRLHGSIRNEERNDAVQQ 286 (404)
Q Consensus 221 ~~~S~Kl~~-L~~ll~~l~~---------~~~KvlIFs~~~~~l~~L~~~L----~~~gi~~~~i~G~~~~~~R~~~i~~ 286 (404)
...|||-.+ +..++..+.. .+.++||.+.....+.-+.+.+ ...|+.+..+.|+.+.......+
T Consensus 53 pTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l-- 130 (423)
T PRK04837 53 QTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVL-- 130 (423)
T ss_pred CCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh--
Confidence 345899654 4444444421 2357999999888766554433 45578888889988765544333
Q ss_pred HhCCCCceEEEeeccccc-----cCCCCCCCCEEEEec
Q psy1089 287 FNGSTEWGVFLLSTRAGG-----QGLNLTAADTCILYD 319 (404)
Q Consensus 287 F~~~~~~~vlLis~~a~g-----~GlnL~~a~~VI~~d 319 (404)
..+ +.|++.++.... ..+++.....+|+=+
T Consensus 131 -~~~--~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDE 165 (423)
T PRK04837 131 -ESG--VDILIGTTGRLIDYAKQNHINLGAIQVVVLDE 165 (423)
T ss_pred -cCC--CCEEEECHHHHHHHHHcCCcccccccEEEEec
Confidence 333 567777775432 345677777777643
No 219
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=42.25 E-value=1.3e+02 Score=26.89 Aligned_cols=41 Identities=24% Similarity=0.267 Sum_probs=34.6
Q ss_pred CCcHHHHHHHHHHHh--------hhCCCeEEEEecchHHHHHHHHHHHh
Q psy1089 223 SSGKMIVLNQLLHKL--------KQTNHKTLVFSTMVKVLNFIEELCVL 263 (404)
Q Consensus 223 ~S~Kl~~L~~ll~~l--------~~~~~KvlIFs~~~~~l~~L~~~L~~ 263 (404)
.+||-..+..++..+ ...+.++||-++....++.+...|..
T Consensus 27 GTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 27 GTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp TSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 389999999999988 56789999999999999988777766
No 220
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=42.02 E-value=35 Score=26.67 Aligned_cols=38 Identities=18% Similarity=0.312 Sum_probs=30.8
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcC
Q psy1089 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIR 276 (404)
Q Consensus 239 ~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~ 276 (404)
..+++++|+|..-.........|...|+.+..+.|++.
T Consensus 59 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 96 (100)
T cd01523 59 PDDQEVTVICAKEGSSQFVAELLAERGYDVDYLAGGMK 96 (100)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHcCceeEEeCCcHH
Confidence 35678999999877777788889999999777888764
No 221
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=42.00 E-value=4.7e+02 Score=28.08 Aligned_cols=78 Identities=12% Similarity=0.146 Sum_probs=57.6
Q ss_pred ccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeec
Q psy1089 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLST 300 (404)
Q Consensus 221 ~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~ 300 (404)
...+||-.. -++..+.. +..+||.+.....+.-....|...|+.+..++++.+..++..+......+. ..++++++
T Consensus 48 pTGsGKTl~--y~lpal~~-~g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~-~~il~~tP 123 (607)
T PRK11057 48 PTGGGKSLC--YQIPALVL-DGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQLEVMAGCRTGQ-IKLLYIAP 123 (607)
T ss_pred CCCchHHHH--HHHHHHHc-CCCEEEEecHHHHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCC-CcEEEECh
Confidence 446899643 23333333 457889999888877777788889999999999999988888888877764 66777765
Q ss_pred cc
Q psy1089 301 RA 302 (404)
Q Consensus 301 ~a 302 (404)
..
T Consensus 124 e~ 125 (607)
T PRK11057 124 ER 125 (607)
T ss_pred HH
Confidence 54
No 222
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=41.64 E-value=1.6e+02 Score=30.86 Aligned_cols=93 Identities=16% Similarity=0.184 Sum_probs=62.9
Q ss_pred ccCCcHHHH-HHHHHHHhh--hCCCe--EEEEecchHHHHHHHHHHH----hc-CCceEeccCCcCHHHHHHHHHHHhCC
Q psy1089 221 VSSSGKMIV-LNQLLHKLK--QTNHK--TLVFSTMVKVLNFIEELCV----LE-NYNYYRLHGSIRNEERNDAVQQFNGS 290 (404)
Q Consensus 221 ~~~S~Kl~~-L~~ll~~l~--~~~~K--vlIFs~~~~~l~~L~~~L~----~~-gi~~~~i~G~~~~~~R~~~i~~F~~~ 290 (404)
...|||..+ +..+|..+. ..... +||++...+...-+.+.+. .. ++.++.+.|+++...+...++. +
T Consensus 74 ~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~---~ 150 (513)
T COG0513 74 QTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR---G 150 (513)
T ss_pred CCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc---C
Confidence 346899644 567777665 23222 8999999888777777664 33 6778999999998777655555 4
Q ss_pred CCceEEEeecc----cccc-CCCCCCCCEEEEe
Q psy1089 291 TEWGVFLLSTR----AGGQ-GLNLTAADTCILY 318 (404)
Q Consensus 291 ~~~~vlLis~~----a~g~-GlnL~~a~~VI~~ 318 (404)
+.+++.++. .... .+++....++|+=
T Consensus 151 --~~ivVaTPGRllD~i~~~~l~l~~v~~lVlD 181 (513)
T COG0513 151 --VDIVVATPGRLLDLIKRGKLDLSGVETLVLD 181 (513)
T ss_pred --CCEEEECccHHHHHHHcCCcchhhcCEEEec
Confidence 556666655 2333 4778888888773
No 223
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=41.45 E-value=86 Score=35.26 Aligned_cols=135 Identities=15% Similarity=0.073 Sum_probs=80.3
Q ss_pred cCCcHHHH-HHHHHHHhhh-CCCeEEEEecchHH----HHHHHHHHHhcC--CceEeccCCcCHHHHHHHHHHHhCCCCc
Q psy1089 222 SSSGKMIV-LNQLLHKLKQ-TNHKTLVFSTMVKV----LNFIEELCVLEN--YNYYRLHGSIRNEERNDAVQQFNGSTEW 293 (404)
Q Consensus 222 ~~S~Kl~~-L~~ll~~l~~-~~~KvlIFs~~~~~----l~~L~~~L~~~g--i~~~~i~G~~~~~~R~~~i~~F~~~~~~ 293 (404)
..|||-.. +..++..+.. ...+.|++...+.. ++.+.+.+...+ +.+.++||.+++++|..++. +. +
T Consensus 94 TgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~---~p--p 168 (851)
T COG1205 94 TGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIR---NP--P 168 (851)
T ss_pred CCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHh---CC--C
Confidence 45899865 5677776654 34467888777554 556677776666 89999999999999984442 22 5
Q ss_pred eEEEeeccccccCCC---------CCCCCEEEEecCC-------CCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHH
Q psy1089 294 GVFLLSTRAGGQGLN---------LTAADTCILYDSD-------WNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVH 357 (404)
Q Consensus 294 ~vlLis~~a~g~Gln---------L~~a~~VI~~d~~-------wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~ 357 (404)
.|++.+++..-.-+- +....+||+=+.+ -|-....-|..|.-|.++.+...|.---|-++..|.
T Consensus 169 ~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~ 248 (851)
T COG1205 169 DILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEF 248 (851)
T ss_pred CEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHH
Confidence 678888776544221 1234444443322 122333455555555544444555544455555555
Q ss_pred HHHH
Q psy1089 358 LFTI 361 (404)
Q Consensus 358 i~~~ 361 (404)
.-+.
T Consensus 249 ~~~l 252 (851)
T COG1205 249 AEEL 252 (851)
T ss_pred HHHh
Confidence 5555
No 224
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=41.23 E-value=44 Score=25.25 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=30.9
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhcCCc-eEeccCCcC
Q psy1089 239 QTNHKTLVFSTMVKVLNFIEELCVLENYN-YYRLHGSIR 276 (404)
Q Consensus 239 ~~~~KvlIFs~~~~~l~~L~~~L~~~gi~-~~~i~G~~~ 276 (404)
..+..+||||............|...|+. +..+.|+..
T Consensus 54 ~~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~ 92 (100)
T smart00450 54 DKDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYK 92 (100)
T ss_pred CCCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHH
Confidence 45678999998877777888889999988 777888874
No 225
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=40.24 E-value=2.3e+02 Score=23.90 Aligned_cols=91 Identities=12% Similarity=0.150 Sum_probs=56.1
Q ss_pred cCCcHHHHHHHHHH-HhhhC-CCeEEEEecchHHHHHHHHHHH----hcCCceEeccCCcCHH-HHHHHHHHHhCCCCce
Q psy1089 222 SSSGKMIVLNQLLH-KLKQT-NHKTLVFSTMVKVLNFIEELCV----LENYNYYRLHGSIRNE-ERNDAVQQFNGSTEWG 294 (404)
Q Consensus 222 ~~S~Kl~~L~~ll~-~l~~~-~~KvlIFs~~~~~l~~L~~~L~----~~gi~~~~i~G~~~~~-~R~~~i~~F~~~~~~~ 294 (404)
..+||-....-.+- .+.+. ..++||.+......+.....+. ..++....++|+.+.. +....+ .. .+.
T Consensus 23 tGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~ 97 (169)
T PF00270_consen 23 TGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL---SN--QAD 97 (169)
T ss_dssp TTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH---HT--TSS
T ss_pred CCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccccccccccccccc---cc--ccc
Confidence 35899988774444 44443 2489999999887776666554 3356788889988854 333333 22 266
Q ss_pred EEEeeccccc-----cCCCCCCCCEEEE
Q psy1089 295 VFLLSTRAGG-----QGLNLTAADTCIL 317 (404)
Q Consensus 295 vlLis~~a~g-----~GlnL~~a~~VI~ 317 (404)
+++.++...- ..+++...+.||+
T Consensus 98 ilv~T~~~l~~~~~~~~~~~~~~~~iVi 125 (169)
T PF00270_consen 98 ILVTTPEQLLDLISNGKINISRLSLIVI 125 (169)
T ss_dssp EEEEEHHHHHHHHHTTSSTGTTESEEEE
T ss_pred ccccCcchhhccccccccccccceeecc
Confidence 7777776422 2235556555444
No 226
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=39.96 E-value=2.2e+02 Score=29.29 Aligned_cols=92 Identities=15% Similarity=0.178 Sum_probs=56.3
Q ss_pred ccCCcHHHH-HHHHHHHhhhC--------CCeEEEEecchHHHHHHHHHHH----hcCCceEeccCCcCHHHHHHHHHHH
Q psy1089 221 VSSSGKMIV-LNQLLHKLKQT--------NHKTLVFSTMVKVLNFIEELCV----LENYNYYRLHGSIRNEERNDAVQQF 287 (404)
Q Consensus 221 ~~~S~Kl~~-L~~ll~~l~~~--------~~KvlIFs~~~~~l~~L~~~L~----~~gi~~~~i~G~~~~~~R~~~i~~F 287 (404)
...|||..+ +..++..+... +.++||.+.....+.-+.+.+. ..++....+.|+.+...... .+
T Consensus 46 pTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l 122 (456)
T PRK10590 46 QTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM---KL 122 (456)
T ss_pred CCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHH---HH
Confidence 345899754 45555544321 2378999998887666655544 44677788889888755433 23
Q ss_pred hCCCCceEEEeecccc-----ccCCCCCCCCEEEE
Q psy1089 288 NGSTEWGVFLLSTRAG-----GQGLNLTAADTCIL 317 (404)
Q Consensus 288 ~~~~~~~vlLis~~a~-----g~GlnL~~a~~VI~ 317 (404)
.. .+.|+++++... ...+++.....+|+
T Consensus 123 ~~--~~~IiV~TP~rL~~~~~~~~~~l~~v~~lVi 155 (456)
T PRK10590 123 RG--GVDVLVATPGRLLDLEHQNAVKLDQVEILVL 155 (456)
T ss_pred cC--CCcEEEEChHHHHHHHHcCCcccccceEEEe
Confidence 33 356777776432 23456667766665
No 227
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=39.94 E-value=1.2e+02 Score=26.65 Aligned_cols=77 Identities=16% Similarity=0.188 Sum_probs=46.9
Q ss_pred cCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcC----HHHHHHHHHHHhCCC--CceE
Q psy1089 222 SSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIR----NEERNDAVQQFNGST--EWGV 295 (404)
Q Consensus 222 ~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~----~~~R~~~i~~F~~~~--~~~v 295 (404)
..|||...+..++. ....+.|+.|..+--....+=...++..|+.+..+.++.- ..+-...+.++.... .+..
T Consensus 9 LGsGKTTli~~ll~-~~~~~~~~~vI~ne~g~~~iD~~~l~~~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~~~~~~d~ 87 (178)
T PF02492_consen 9 LGSGKTTLINHLLK-RNRQGERVAVIVNEFGEVNIDAELLQEDGVPVVELNNGCICCTLRDDLVEALRRLLREYEERPDR 87 (178)
T ss_dssp TTSSHHHHHHHHHH-HHTTTS-EEEEECSTTSTHHHHHHHHTTT-EEEEECTTTESS-TTS-HHHHHHHHCCCCHGC-SE
T ss_pred CCCCHHHHHHHHHH-HhcCCceeEEEEccccccccchhhhcccceEEEEecCCCcccccHHHHHHHHHHHHHhcCCCcCE
Confidence 35999999999998 5557778777665444344445566777888888876531 224455666665543 3455
Q ss_pred EEee
Q psy1089 296 FLLS 299 (404)
Q Consensus 296 lLis 299 (404)
+++=
T Consensus 88 IiIE 91 (178)
T PF02492_consen 88 IIIE 91 (178)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 5543
No 228
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=39.83 E-value=1.7e+02 Score=31.15 Aligned_cols=92 Identities=15% Similarity=0.275 Sum_probs=57.6
Q ss_pred ccCCcHHHH-HHHHHHHhhh---------CCCeEEEEecchHHHHHHHHHHH----hcCCceEeccCCcCHHHHHHHHHH
Q psy1089 221 VSSSGKMIV-LNQLLHKLKQ---------TNHKTLVFSTMVKVLNFIEELCV----LENYNYYRLHGSIRNEERNDAVQQ 286 (404)
Q Consensus 221 ~~~S~Kl~~-L~~ll~~l~~---------~~~KvlIFs~~~~~l~~L~~~L~----~~gi~~~~i~G~~~~~~R~~~i~~ 286 (404)
-..|||... +.-++..+.. .+.++||.+.....+.-+.+.+. ..++.+..++|+.+.......+.
T Consensus 54 pTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~- 132 (572)
T PRK04537 54 QTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQ- 132 (572)
T ss_pred CCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHh-
Confidence 356899855 3444544422 13589999999888766655544 45788889999998876655543
Q ss_pred HhCCCCceEEEeeccccc------cCCCCCCCCEEEE
Q psy1089 287 FNGSTEWGVFLLSTRAGG------QGLNLTAADTCIL 317 (404)
Q Consensus 287 F~~~~~~~vlLis~~a~g------~GlnL~~a~~VI~ 317 (404)
. ++.|++.++...- ..+++..+.++|+
T Consensus 133 --~--~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lVi 165 (572)
T PRK04537 133 --Q--GVDVIIATPGRLIDYVKQHKVVSLHACEICVL 165 (572)
T ss_pred --C--CCCEEEECHHHHHHHHHhccccchhheeeeEe
Confidence 2 2556777654321 2355666666555
No 229
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=39.47 E-value=1.4e+02 Score=25.83 Aligned_cols=59 Identities=8% Similarity=0.114 Sum_probs=40.6
Q ss_pred eEEEEecc-------hHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhC---CCCceEEEeecc
Q psy1089 243 KTLVFSTM-------VKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG---STEWGVFLLSTR 301 (404)
Q Consensus 243 KvlIFs~~-------~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~---~~~~~vlLis~~ 301 (404)
+|+||+.+ -........+|+..+++|..++=++..+.++++.+.... ...++.+++...
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~ 69 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGR 69 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCE
Confidence 57788776 345677888999999999998888887778776665543 123444454433
No 230
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=38.14 E-value=1.3e+02 Score=33.19 Aligned_cols=92 Identities=15% Similarity=0.072 Sum_probs=60.0
Q ss_pred cCCcHHHH-HHHHHHHhhh-CCCeEEEEecchHHHHHHHHHHHhc---CCceEeccCCcCHHHHHHHHHHHhCCCCceEE
Q psy1089 222 SSSGKMIV-LNQLLHKLKQ-TNHKTLVFSTMVKVLNFIEELCVLE---NYNYYRLHGSIRNEERNDAVQQFNGSTEWGVF 296 (404)
Q Consensus 222 ~~S~Kl~~-L~~ll~~l~~-~~~KvlIFs~~~~~l~~L~~~L~~~---gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vl 296 (404)
..|||..+ +..++..+.. .+.++|+.+.......-+...|+.. ++.+..++|.++.++|..+. .. +.++
T Consensus 60 TGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i~----~~--~~Ii 133 (742)
T TIGR03817 60 TASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERRWAR----EH--ARYV 133 (742)
T ss_pred CCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHHh----cC--CCEE
Confidence 45899865 4556665543 4568999999888776666666543 67788899999987764332 22 4667
Q ss_pred EeeccccccCC---------CCCCCCEEEEec
Q psy1089 297 LLSTRAGGQGL---------NLTAADTCILYD 319 (404)
Q Consensus 297 Lis~~a~g~Gl---------nL~~a~~VI~~d 319 (404)
+.+++..-.++ .+....+||+=+
T Consensus 134 vtTPd~L~~~~L~~~~~~~~~l~~l~~vViDE 165 (742)
T TIGR03817 134 LTNPDMLHRGILPSHARWARFLRRLRYVVIDE 165 (742)
T ss_pred EEChHHHHHhhccchhHHHHHHhcCCEEEEeC
Confidence 77776543332 145667776644
No 231
>PTZ00110 helicase; Provisional
Probab=37.49 E-value=1.9e+02 Score=30.57 Aligned_cols=92 Identities=15% Similarity=0.154 Sum_probs=56.4
Q ss_pred ccCCcHHHH-HHHHHHHhhh-------CCCeEEEEecchHHHHHHHHHHHh----cCCceEeccCCcCHHHHHHHHHHHh
Q psy1089 221 VSSSGKMIV-LNQLLHKLKQ-------TNHKTLVFSTMVKVLNFIEELCVL----ENYNYYRLHGSIRNEERNDAVQQFN 288 (404)
Q Consensus 221 ~~~S~Kl~~-L~~ll~~l~~-------~~~KvlIFs~~~~~l~~L~~~L~~----~gi~~~~i~G~~~~~~R~~~i~~F~ 288 (404)
-..|||-.. +..++..+.. .+..+||.+.....+.-+...+.. .++....+.|+.+.......+ .
T Consensus 175 pTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l---~ 251 (545)
T PTZ00110 175 ETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYAL---R 251 (545)
T ss_pred CCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHH---H
Confidence 456999764 4455544322 356789999988887777666654 356777888888765443333 3
Q ss_pred CCCCceEEEeeccc----ccc-CCCCCCCCEEEE
Q psy1089 289 GSTEWGVFLLSTRA----GGQ-GLNLTAADTCIL 317 (404)
Q Consensus 289 ~~~~~~vlLis~~a----~g~-GlnL~~a~~VI~ 317 (404)
.+ +.+++.++.. ... -++|....+||+
T Consensus 252 ~~--~~IlVaTPgrL~d~l~~~~~~l~~v~~lVi 283 (545)
T PTZ00110 252 RG--VEILIACPGRLIDFLESNVTNLRRVTYLVL 283 (545)
T ss_pred cC--CCEEEECHHHHHHHHHcCCCChhhCcEEEe
Confidence 33 5667776632 222 245667776665
No 232
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=37.02 E-value=51 Score=25.54 Aligned_cols=37 Identities=8% Similarity=0.124 Sum_probs=28.3
Q ss_pred CCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcC
Q psy1089 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIR 276 (404)
Q Consensus 240 ~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~ 276 (404)
.+.+++++|..-.........|...|+++..++|++.
T Consensus 55 ~~~~iv~~c~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 91 (95)
T cd01534 55 RGARIVLADDDGVRADMTASWLAQMGWEVYVLEGGLA 91 (95)
T ss_pred CCCeEEEECCCCChHHHHHHHHHHcCCEEEEecCcHH
Confidence 3568999999866666667778889999666888763
No 233
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=36.13 E-value=1.1e+02 Score=23.85 Aligned_cols=38 Identities=13% Similarity=0.248 Sum_probs=29.0
Q ss_pred CCCeEEEEecchHHHHHHHHHHHhcCCc-eEeccCCcCH
Q psy1089 240 TNHKTLVFSTMVKVLNFIEELCVLENYN-YYRLHGSIRN 277 (404)
Q Consensus 240 ~~~KvlIFs~~~~~l~~L~~~L~~~gi~-~~~i~G~~~~ 277 (404)
.+.+++|+|+.-.........|...|+. +..++|++..
T Consensus 57 ~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~~ 95 (101)
T cd01528 57 PDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGIDA 95 (101)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHHH
Confidence 4678999998866666777778888885 6678888653
No 234
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=35.86 E-value=1.3e+02 Score=35.89 Aligned_cols=93 Identities=15% Similarity=0.165 Sum_probs=58.3
Q ss_pred cCCcHHHHH-HHHHHHhhh------------CCCeEEEEecchHHHHHHHHHHHh----------------cCCceEecc
Q psy1089 222 SSSGKMIVL-NQLLHKLKQ------------TNHKTLVFSTMVKVLNFIEELCVL----------------ENYNYYRLH 272 (404)
Q Consensus 222 ~~S~Kl~~L-~~ll~~l~~------------~~~KvlIFs~~~~~l~~L~~~L~~----------------~gi~~~~i~ 272 (404)
..|||..+. .-+|..+.. .+-++|+.+..+....-+.+.|+. .++.+..++
T Consensus 5 TGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrt 84 (1490)
T PRK09751 5 TGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRT 84 (1490)
T ss_pred CCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEE
Confidence 358887653 345555432 246889999988776666555431 367888999
Q ss_pred CCcCHHHHHHHHHHHhCCCCceEEEeeccccc-----cC-CCCCCCCEEEEec
Q psy1089 273 GSIRNEERNDAVQQFNGSTEWGVFLLSTRAGG-----QG-LNLTAADTCILYD 319 (404)
Q Consensus 273 G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g-----~G-lnL~~a~~VI~~d 319 (404)
|+++..+|.+.+.. . +.|+|.++...- .+ ..|....+||+=+
T Consensus 85 GDt~~~eR~rll~~---p--pdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE 132 (1490)
T PRK09751 85 GDTPAQERSKLTRN---P--PDILITTPESLYLMLTSRARETLRGVETVIIDE 132 (1490)
T ss_pred CCCCHHHHHHHhcC---C--CCEEEecHHHHHHHHhhhhhhhhccCCEEEEec
Confidence 99999988775542 2 456666665432 11 2456677766633
No 235
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=35.51 E-value=1.9e+02 Score=28.74 Aligned_cols=47 Identities=17% Similarity=0.313 Sum_probs=37.6
Q ss_pred cCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEec
Q psy1089 222 SSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRL 271 (404)
Q Consensus 222 ~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i 271 (404)
.+++-+.....++.++.+.|+.|+|.+.-. +.+.+.|+..|+++..+
T Consensus 8 ~~p~hvhfFk~~I~eL~~~GheV~it~R~~---~~~~~LL~~yg~~y~~i 54 (335)
T PF04007_consen 8 THPAHVHFFKNIIRELEKRGHEVLITARDK---DETEELLDLYGIDYIVI 54 (335)
T ss_pred CCchHHHHHHHHHHHHHhCCCEEEEEEecc---chHHHHHHHcCCCeEEE
Confidence 346677788899999999999999999765 45566677889998877
No 236
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=34.96 E-value=75 Score=24.55 Aligned_cols=38 Identities=8% Similarity=-0.026 Sum_probs=28.5
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhcCC-ceEeccCCcC
Q psy1089 239 QTNHKTLVFSTMVKVLNFIEELCVLENY-NYYRLHGSIR 276 (404)
Q Consensus 239 ~~~~KvlIFs~~~~~l~~L~~~L~~~gi-~~~~i~G~~~ 276 (404)
..+.++|++|............|+..|+ ++..++|++.
T Consensus 54 ~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG~~ 92 (96)
T cd01529 54 GRATRYVLTCDGSLLARFAAQELLALGGKPVALLDGGTS 92 (96)
T ss_pred CCCCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCCHH
Confidence 3567899999886666667777888888 4666788763
No 237
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=34.54 E-value=1.1e+02 Score=24.59 Aligned_cols=47 Identities=17% Similarity=0.125 Sum_probs=32.9
Q ss_pred HHHHHHHHh-hhCCCeEEEEecchHHHHHHHHHHHhcCCc-eEeccCCc
Q psy1089 229 VLNQLLHKL-KQTNHKTLVFSTMVKVLNFIEELCVLENYN-YYRLHGSI 275 (404)
Q Consensus 229 ~L~~ll~~l-~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~-~~~i~G~~ 275 (404)
.+...+..+ ...++.+|+||............|...|++ +..++|++
T Consensus 65 ~~~~~~~~~~~~~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~ 113 (118)
T cd01449 65 ELRALFAALGITPDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSW 113 (118)
T ss_pred HHHHHHHHcCCCCCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChH
Confidence 344444443 235678999998866667778888999985 66778876
No 238
>PRK10329 glutaredoxin-like protein; Provisional
Probab=34.35 E-value=2.1e+02 Score=21.75 Aligned_cols=55 Identities=7% Similarity=0.085 Sum_probs=35.8
Q ss_pred eEEEEecc-hHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEee
Q psy1089 243 KTLVFSTM-VKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLS 299 (404)
Q Consensus 243 KvlIFs~~-~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis 299 (404)
++.||+.. --.......+|...|++|..++-...++.+...... ....+.++++.
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~~--g~~~vPvv~i~ 57 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRAQ--GFRQLPVVIAG 57 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHc--CCCCcCEEEEC
Confidence 57788743 334667888999999999888877666555544332 11246666653
No 239
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=34.34 E-value=1e+02 Score=26.66 Aligned_cols=37 Identities=11% Similarity=0.115 Sum_probs=32.8
Q ss_pred cHHH-HHHHHHHHhhhCCCeEEEEecchHHHHHHHHHH
Q psy1089 225 GKMI-VLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELC 261 (404)
Q Consensus 225 ~Kl~-~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L 261 (404)
+++. ++..|+.+....|.||+|-|....-.+.|-+.|
T Consensus 12 ~~~~~~~c~L~~k~~~~G~rvlI~~~d~~q~e~LD~~L 49 (144)
T COG2927 12 STLLAAACRLAEKAWRSGWRVLIQCEDEAQAEALDEHL 49 (144)
T ss_pred hhHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhh
Confidence 3444 899999999999999999999999999998888
No 240
>PF01352 KRAB: KRAB box; InterPro: IPR001909 The Krueppel-associated box (KRAB) is a domain of around 75 amino acids that is found in the N-terminal part of about one third of eukaryotic Krueppel-type C2H2 zinc finger proteins (ZFPs) []. It is enriched in charged amino acids and can be divided into subregions A and B, which are predicted to fold into two amphipathic alpha-helices. The KRAB A and B boxes can be separated by variable spacer segments and many KRAB proteins contain only the A box []. The functions currently known for members of the KRAB-containing protein family include transcriptional repression of RNA polymerase I, II, and III promoters, binding and splicing of RNA, and control of nucleolus function. The KRAB domain functions as a transcriptional repressor when tethered to the template DNA by a DNA-binding domain. A sequence of 45 amino acids in the KRAB A subdomain has been shown to be necessary and sufficient for transcriptional repression. The B box does not repress by itself but does potentiate the repression exerted by the KRAB A subdomain [, ]. Gene silencing requires the binding of the KRAB domain to the RING-B box-coiled coil (RBCC) domain of the KAP-1/TIF1-beta corepressor. As KAP-1 binds to the heterochromatin proteins HP1, it has been proposed that the KRAB-ZFP-bound target gene could be silenced following recruitment to heterochromatin [, ]. KRAB-ZFPs probably constitute the single largest class of transcription factors within the human genome []. Although the function of KRAB-ZFPs is largely unknown, they appear to play important roles during cell differentiation and development. The KRAB domain is generally encoded by two exons. The regions coded by the two exons are known as KRAB-A and KRAB-B.; GO: 0003676 nucleic acid binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1V65_A.
Probab=33.11 E-value=39 Score=22.49 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=13.9
Q ss_pred cCCCHHHHHHHHHHHhhh
Q psy1089 31 CPMVPAQELMYTKVLTKT 48 (404)
Q Consensus 31 ~~lt~~Q~~~Y~~~~~~~ 48 (404)
--|.|.||.+|+++....
T Consensus 16 ~~L~~~Qk~ly~dvm~En 33 (41)
T PF01352_consen 16 ELLDPAQKNLYRDVMLEN 33 (41)
T ss_dssp HTS-HHHHHHHHHHHHHT
T ss_pred ccccceecccchhHHHHh
Confidence 357899999999998654
No 241
>PF12367 PFO_beta_C: Pyruvate ferredoxin oxidoreductase beta subunit C terminal
Probab=32.97 E-value=1e+02 Score=23.02 Aligned_cols=47 Identities=19% Similarity=0.301 Sum_probs=36.5
Q ss_pred EEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHH
Q psy1089 314 TCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTI 361 (404)
Q Consensus 314 ~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~ 361 (404)
+|..++-.++|.+..+|+..+.. |..=++=|++-..+-|+||++-..
T Consensus 16 rvy~l~e~~Dp~d~~~A~~~a~e-~d~iplGIfY~~~~ptfee~~~~~ 62 (67)
T PF12367_consen 16 RVYKLDEDHDPSDREAAMEKARE-GDKIPLGIFYRNERPTFEERLPEL 62 (67)
T ss_pred heEECCCCCCchhHHHHHHHHHh-cCCceEEEEEeCCCCCHHHHhhhh
Confidence 46666789999999999988887 555566666666699999988665
No 242
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=32.84 E-value=2.9e+02 Score=28.42 Aligned_cols=93 Identities=14% Similarity=0.236 Sum_probs=56.6
Q ss_pred ccCCcHHHH-HHHHHHHhhhC---------CCeEEEEecchHHHHHHHHHHH----hcCCceEeccCCcCHHHHHHHHHH
Q psy1089 221 VSSSGKMIV-LNQLLHKLKQT---------NHKTLVFSTMVKVLNFIEELCV----LENYNYYRLHGSIRNEERNDAVQQ 286 (404)
Q Consensus 221 ~~~S~Kl~~-L~~ll~~l~~~---------~~KvlIFs~~~~~l~~L~~~L~----~~gi~~~~i~G~~~~~~R~~~i~~ 286 (404)
-..|||-.. +..++..+... +.++||.+.......-+...++ ..|+.+..++|+.+.....+ .
T Consensus 132 pTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~---~ 208 (475)
T PRK01297 132 QTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLK---Q 208 (475)
T ss_pred CCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHH---H
Confidence 356899844 44555554332 3578999998887766555544 45788888899876544332 3
Q ss_pred HhCCCCceEEEeecccc-----ccCCCCCCCCEEEE
Q psy1089 287 FNGSTEWGVFLLSTRAG-----GQGLNLTAADTCIL 317 (404)
Q Consensus 287 F~~~~~~~vlLis~~a~-----g~GlnL~~a~~VI~ 317 (404)
+..+ .+.+++.++... ...+.+...++||+
T Consensus 209 ~~~~-~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lVi 243 (475)
T PRK01297 209 LEAR-FCDILVATPGRLLDFNQRGEVHLDMVEVMVL 243 (475)
T ss_pred HhCC-CCCEEEECHHHHHHHHHcCCcccccCceEEe
Confidence 3333 356777776542 22445666666665
No 243
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=31.97 E-value=2.8e+02 Score=30.08 Aligned_cols=91 Identities=20% Similarity=0.179 Sum_probs=56.8
Q ss_pred cCCcHHHHH-HHHHHHhhh--CCCeEEEEecchHHHHHHHHHHHh-----cCCceEeccCCcCHHHHHHHHHHHhCCCCc
Q psy1089 222 SSSGKMIVL-NQLLHKLKQ--TNHKTLVFSTMVKVLNFIEELCVL-----ENYNYYRLHGSIRNEERNDAVQQFNGSTEW 293 (404)
Q Consensus 222 ~~S~Kl~~L-~~ll~~l~~--~~~KvlIFs~~~~~l~~L~~~L~~-----~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~ 293 (404)
..|||..+. ..++..+.. .+.++||.+.....+.-+...+.. .++.++.++|+.+...+...+ +.+ +
T Consensus 52 TGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l---~~~--~ 126 (629)
T PRK11634 52 TGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL---RQG--P 126 (629)
T ss_pred CCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh---cCC--C
Confidence 458998653 455554432 345899999998877666555442 378888999998876544433 333 5
Q ss_pred eEEEeeccccc-----cCCCCCCCCEEEE
Q psy1089 294 GVFLLSTRAGG-----QGLNLTAADTCIL 317 (404)
Q Consensus 294 ~vlLis~~a~g-----~GlnL~~a~~VI~ 317 (404)
.|++.++...- ..+++.....||+
T Consensus 127 ~IVVgTPgrl~d~l~r~~l~l~~l~~lVl 155 (629)
T PRK11634 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVL 155 (629)
T ss_pred CEEEECHHHHHHHHHcCCcchhhceEEEe
Confidence 66776654321 2356666666664
No 244
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=31.90 E-value=1.6e+02 Score=33.70 Aligned_cols=70 Identities=20% Similarity=0.193 Sum_probs=48.5
Q ss_pred HHHHHHHHHhCCC-CceEEEeeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCC--CcEEEEEEEe
Q psy1089 279 ERNDAVQQFNGST-EWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQT--KPVCIYRLVS 350 (404)
Q Consensus 279 ~R~~~i~~F~~~~-~~~vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~--~~V~Vy~Li~ 350 (404)
.+.....+|.... ...+ |+-.+..=+|.|-+..++ +++|-+--.....||+.|+.|.=-. ..-.|..++.
T Consensus 579 ~~~~~~~r~~~~~d~~ki-lIV~dmlLTGFDaP~L~T-mYvDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 579 EKKDLIKRFKLKDDPLDL-LIVVDMLLTGFDAPCLNT-LYVDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred HHhhhhhhhcCcCCCCCE-EEEEccccccCCccccce-EEeccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 3445556654433 4554 444588889999998875 4568888888999999999999433 4456665554
No 245
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=31.86 E-value=1.2e+02 Score=24.06 Aligned_cols=37 Identities=5% Similarity=-0.123 Sum_probs=28.0
Q ss_pred CCCeEEEEecchHHHHHHHHHHHhcCCc--eEeccCCcC
Q psy1089 240 TNHKTLVFSTMVKVLNFIEELCVLENYN--YYRLHGSIR 276 (404)
Q Consensus 240 ~~~KvlIFs~~~~~l~~L~~~L~~~gi~--~~~i~G~~~ 276 (404)
.+..++|||..-.........|...|++ +..+.|+++
T Consensus 65 ~~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~ 103 (109)
T cd01533 65 PRTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQ 103 (109)
T ss_pred CCCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHH
Confidence 3568999998765555567788889984 677888874
No 246
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=31.85 E-value=67 Score=27.90 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=68.4
Q ss_pred ccCCcHHH-HHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEee
Q psy1089 221 VSSSGKMI-VLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLS 299 (404)
Q Consensus 221 ~~~S~Kl~-~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis 299 (404)
-..+||-. +|-+++++..+.+.|+||.....-+++.+.++|+..++.+.. ..-. + ..|... . +=+++
T Consensus 12 hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~~~~~~t---~~~~--~----~~~g~~--~-i~vMc 79 (148)
T PF07652_consen 12 HPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGLPVRFHT---NARM--R----THFGSS--I-IDVMC 79 (148)
T ss_dssp -TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTSSEEEES---TTSS----------SSS--S-EEEEE
T ss_pred CCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcCCcccCc---eeee--c----cccCCC--c-ccccc
Confidence 34588987 588999999999999999999999999999999865543321 1110 0 122221 2 22233
Q ss_pred ccc----cccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEE
Q psy1089 300 TRA----GGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLV 349 (404)
Q Consensus 300 ~~a----~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li 349 (404)
... ...|..+.+.+.||+=+..|.-..-+=+.|.++...-...+.+..+-
T Consensus 80 ~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~g~~~~i~mT 133 (148)
T PF07652_consen 80 HATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLRELAESGEAKVIFMT 133 (148)
T ss_dssp HHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHTTS-EEEEEE
T ss_pred cHHHHHHhcCcccccCccEEEEeccccCCHHHHhhheeHHHhhhccCeeEEEEe
Confidence 222 22355667777777767777655555666777766555556665443
No 247
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=31.44 E-value=78 Score=25.29 Aligned_cols=38 Identities=5% Similarity=-0.049 Sum_probs=29.2
Q ss_pred hCCCeEEEEecchH--HHHHHHHHHHhcCCceEeccCCcC
Q psy1089 239 QTNHKTLVFSTMVK--VLNFIEELCVLENYNYYRLHGSIR 276 (404)
Q Consensus 239 ~~~~KvlIFs~~~~--~l~~L~~~L~~~gi~~~~i~G~~~ 276 (404)
..+.+++|+|.... ........|...|+++..++|++.
T Consensus 62 ~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~l~GG~~ 101 (110)
T cd01521 62 DKEKLFVVYCDGPGCNGATKAALKLAELGFPVKEMIGGLD 101 (110)
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHcCCeEEEecCCHH
Confidence 45678999998653 456677788888998888898874
No 248
>KOG1805|consensus
Probab=30.61 E-value=5.5e+02 Score=29.36 Aligned_cols=51 Identities=20% Similarity=0.103 Sum_probs=46.4
Q ss_pred CCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccC
Q psy1089 223 SSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHG 273 (404)
Q Consensus 223 ~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G 273 (404)
.+||...+..+++-+...|+|||+-|.....+|-|-..|+..|+.++|+-.
T Consensus 695 GTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~~~i~~lRLG~ 745 (1100)
T KOG1805|consen 695 GTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKGFGIYILRLGS 745 (1100)
T ss_pred CCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhccCcceeecCC
Confidence 589999999999999999999999999988999998899999999988754
No 249
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=30.29 E-value=8.1 Score=42.79 Aligned_cols=40 Identities=13% Similarity=-0.009 Sum_probs=34.0
Q ss_pred eccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCC
Q psy1089 299 STRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQT 340 (404)
Q Consensus 299 s~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~ 340 (404)
....+..|.++..++..+.++.+|+| ..|++++.+++++.
T Consensus 485 kn~~s~~~~~l~~~~~~~~~~LtgTP--len~l~eL~sl~~~ 524 (866)
T COG0553 485 KNDQSSEGKALQFLKALNRLDLTGTP--LENRLGELWSLLQE 524 (866)
T ss_pred hhhhhHHHHHHHHHhhcceeeCCCCh--HhhhHHHHHHHHHH
Confidence 34566778888888888999999999 68999999999986
No 250
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=29.97 E-value=57 Score=25.32 Aligned_cols=38 Identities=5% Similarity=0.074 Sum_probs=28.8
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhcCCc-eEeccCCcC
Q psy1089 239 QTNHKTLVFSTMVKVLNFIEELCVLENYN-YYRLHGSIR 276 (404)
Q Consensus 239 ~~~~KvlIFs~~~~~l~~L~~~L~~~gi~-~~~i~G~~~ 276 (404)
..+.+++|||............|...|+. +..++|+..
T Consensus 59 ~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~~ 97 (103)
T cd01447 59 AEDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGFK 97 (103)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcHH
Confidence 45678999998765566677888888886 677888764
No 251
>KOG0347|consensus
Probab=29.53 E-value=1.6e+02 Score=31.38 Aligned_cols=48 Identities=10% Similarity=0.148 Sum_probs=39.6
Q ss_pred hCCCe--EEEEecchHHHHHHHHHHH----hcCCceEeccCCcCHHHHHHHHHH
Q psy1089 239 QTNHK--TLVFSTMVKVLNFIEELCV----LENYNYYRLHGSIRNEERNDAVQQ 286 (404)
Q Consensus 239 ~~~~K--vlIFs~~~~~l~~L~~~L~----~~gi~~~~i~G~~~~~~R~~~i~~ 286 (404)
..+.+ .|||+.......-+..+|. .-++.+..|.|+++....++++++
T Consensus 259 ~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~ 312 (731)
T KOG0347|consen 259 AKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ 312 (731)
T ss_pred hccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc
Confidence 34556 8999999887776666664 668999999999999999999987
No 252
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=29.37 E-value=76 Score=24.79 Aligned_cols=38 Identities=18% Similarity=0.203 Sum_probs=27.8
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhcCCc-eEeccCCcC
Q psy1089 239 QTNHKTLVFSTMVKVLNFIEELCVLENYN-YYRLHGSIR 276 (404)
Q Consensus 239 ~~~~KvlIFs~~~~~l~~L~~~L~~~gi~-~~~i~G~~~ 276 (404)
..+.+++|+|+.-.........|...|+. +..+.|++.
T Consensus 59 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 97 (101)
T cd01518 59 LKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGIL 97 (101)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHH
Confidence 35678999998765555666778888985 667888764
No 253
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=28.53 E-value=3.8e+02 Score=23.92 Aligned_cols=62 Identities=16% Similarity=0.094 Sum_probs=47.3
Q ss_pred HHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCC
Q psy1089 229 VLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTE 292 (404)
Q Consensus 229 ~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~ 292 (404)
.+..-+.++...|-+++|+|+... ..+..+....|++|..--+.-....-.+++..++-+++
T Consensus 50 e~~~W~~e~k~~gi~v~vvSNn~e--~RV~~~~~~l~v~fi~~A~KP~~~~fr~Al~~m~l~~~ 111 (175)
T COG2179 50 ELRAWLAELKEAGIKVVVVSNNKE--SRVARAAEKLGVPFIYRAKKPFGRAFRRALKEMNLPPE 111 (175)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCCH--HHHHhhhhhcCCceeecccCccHHHHHHHHHHcCCChh
Confidence 455566667778999999999654 56677777888888776666667777889999988864
No 254
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=28.41 E-value=4.1e+02 Score=27.42 Aligned_cols=85 Identities=16% Similarity=0.237 Sum_probs=60.2
Q ss_pred ccCCcHHHHHHHHHHHhhhCCCeEEEEecc---hHHHHHHHHHHHhcCCceEeccCCc-CHHHHHHHHHHHhCCCCceEE
Q psy1089 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTM---VKVLNFIEELCVLENYNYYRLHGSI-RNEERNDAVQQFNGSTEWGVF 296 (404)
Q Consensus 221 ~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~---~~~l~~L~~~L~~~gi~~~~i~G~~-~~~~R~~~i~~F~~~~~~~vl 296 (404)
...|||.....+|-..+.+.+.|+++.|.- +...+-|+..-...|+++.....+. |.+--.+.++.|.... ..|+
T Consensus 108 LQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~ak~~~-~Dvv 186 (451)
T COG0541 108 LQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKAKEEG-YDVV 186 (451)
T ss_pred ccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHHHHcC-CCEE
Confidence 568999999999999998899999988754 3445666666667889988875444 5455677888888763 4556
Q ss_pred EeeccccccCC
Q psy1089 297 LLSTRAGGQGL 307 (404)
Q Consensus 297 Lis~~a~g~Gl 307 (404)
|+. .||-..+
T Consensus 187 IvD-TAGRl~i 196 (451)
T COG0541 187 IVD-TAGRLHI 196 (451)
T ss_pred EEe-CCCcccc
Confidence 554 3333444
No 255
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=28.01 E-value=1.4e+02 Score=23.22 Aligned_cols=38 Identities=11% Similarity=0.122 Sum_probs=23.6
Q ss_pred hCCCeEEEEecchHHHHHHH-----HHHHhcCC-ceEeccCCcC
Q psy1089 239 QTNHKTLVFSTMVKVLNFIE-----ELCVLENY-NYYRLHGSIR 276 (404)
Q Consensus 239 ~~~~KvlIFs~~~~~l~~L~-----~~L~~~gi-~~~~i~G~~~ 276 (404)
..+..+|+||.......... ..|...|+ ++..+.|+..
T Consensus 65 ~~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~ 108 (113)
T PF00581_consen 65 DKDKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFE 108 (113)
T ss_dssp TTTSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHH
T ss_pred cccccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHH
Confidence 45667888884333333222 23777788 7788888764
No 256
>PHA02558 uvsW UvsW helicase; Provisional
Probab=27.51 E-value=2.5e+02 Score=29.37 Aligned_cols=44 Identities=16% Similarity=0.138 Sum_probs=33.0
Q ss_pred ccCCcHHHHHHHHHHHhhhCCC-eEEEEecchHHHHHHHHHHHhc
Q psy1089 221 VSSSGKMIVLNQLLHKLKQTNH-KTLVFSTMVKVLNFIEELCVLE 264 (404)
Q Consensus 221 ~~~S~Kl~~L~~ll~~l~~~~~-KvlIFs~~~~~l~~L~~~L~~~ 264 (404)
...+||..+...+.....+.++ ++||.++....++-+.+.|...
T Consensus 137 pTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~ 181 (501)
T PHA02558 137 PTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDY 181 (501)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHh
Confidence 3469999877666655444454 9999999999888888777654
No 257
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=27.31 E-value=97 Score=23.99 Aligned_cols=38 Identities=11% Similarity=-0.005 Sum_probs=28.6
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhcCC-ceEeccCCcC
Q psy1089 239 QTNHKTLVFSTMVKVLNFIEELCVLENY-NYYRLHGSIR 276 (404)
Q Consensus 239 ~~~~KvlIFs~~~~~l~~L~~~L~~~gi-~~~~i~G~~~ 276 (404)
..+++++++|..-.........|...|+ ++..++|+..
T Consensus 52 ~~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~~ 90 (99)
T cd01527 52 VGANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGLD 90 (99)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCHH
Confidence 3567899999987666777788887777 4666888763
No 258
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=26.74 E-value=72 Score=26.09 Aligned_cols=38 Identities=5% Similarity=-0.098 Sum_probs=30.4
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhcCC--ceEeccCCcC
Q psy1089 239 QTNHKTLVFSTMVKVLNFIEELCVLENY--NYYRLHGSIR 276 (404)
Q Consensus 239 ~~~~KvlIFs~~~~~l~~L~~~L~~~gi--~~~~i~G~~~ 276 (404)
..+..++|+|+.-.........|...|+ ++..++|++.
T Consensus 70 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~~ 109 (122)
T cd01526 70 DKDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGLK 109 (122)
T ss_pred CCCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchHH
Confidence 3567899999886667777888999999 5788899874
No 259
>PLN02363 phosphoribosylanthranilate isomerase
Probab=26.67 E-value=4.7e+02 Score=24.82 Aligned_cols=50 Identities=16% Similarity=0.107 Sum_probs=33.6
Q ss_pred HHHHHHHHhhhC-CCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHH
Q psy1089 229 VLNQLLHKLKQT-NHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEER 280 (404)
Q Consensus 229 ~L~~ll~~l~~~-~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R 280 (404)
...++...+... -.+|.||... ..+.|.+.++..++.++.+||..+.+..
T Consensus 87 ~a~~I~~~l~~~~~~~VgVfv~~--~~~~I~~~~~~~~ld~VQLHG~e~~~~~ 137 (256)
T PLN02363 87 VAKEISQVAREGGAKPVGVFVDD--DANTILRAADSSDLELVQLHGNGSRAAF 137 (256)
T ss_pred HHHHHHHhccccCccEEEEEeCC--CHHHHHHHHHhcCCCEEEECCCCCHHHH
Confidence 344444433222 3468899754 4567777788889999999998886543
No 260
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=25.70 E-value=5.3e+02 Score=25.23 Aligned_cols=38 Identities=3% Similarity=-0.050 Sum_probs=31.6
Q ss_pred HHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceE
Q psy1089 232 QLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYY 269 (404)
Q Consensus 232 ~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~ 269 (404)
+.+.+..++|+.+|++|.+-...|+...+|...+..+.
T Consensus 113 e~l~e~l~~~~gvIl~~~H~gn~E~~~~~l~~~~~~~~ 150 (308)
T COG1560 113 EHLEEALANGRGVILVTPHFGNWELGGRALAQQGPKVT 150 (308)
T ss_pred HHHHHHHHcCCCEEEEecCcchHHHHHHHHHHhCCCee
Confidence 45555667899999999999999999999998877743
No 261
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=25.46 E-value=1.7e+02 Score=28.60 Aligned_cols=49 Identities=14% Similarity=0.110 Sum_probs=33.6
Q ss_pred hCCCeEEEEec-chHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHh
Q psy1089 239 QTNHKTLVFST-MVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN 288 (404)
Q Consensus 239 ~~~~KvlIFs~-~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~ 288 (404)
..+.+++|||. .-.........|...|+.+..+.|+...= +......+.
T Consensus 72 ~~~~~vvvyC~~gG~RS~~aa~~L~~~G~~v~~L~GG~~aw-~~~~~~~~~ 121 (311)
T TIGR03167 72 DGPPQPLLYCWRGGMRSGSLAWLLAQIGFRVPRLEGGYKAY-RRFVIDQLE 121 (311)
T ss_pred CCCCcEEEEECCCChHHHHHHHHHHHcCCCEEEecChHHHH-HHhhhhhhh
Confidence 34456999996 34456677788899999999999987543 333334444
No 262
>KOG0331|consensus
Probab=25.22 E-value=3.8e+02 Score=28.32 Aligned_cols=91 Identities=14% Similarity=0.111 Sum_probs=59.9
Q ss_pred cCCcHH-HHHHHHHHHhhh--------CCCeEEEEecchHHHHHHHHHHHhc----CCceEeccCCcCHHHHHHHHHHHh
Q psy1089 222 SSSGKM-IVLNQLLHKLKQ--------TNHKTLVFSTMVKVLNFIEELCVLE----NYNYYRLHGSIRNEERNDAVQQFN 288 (404)
Q Consensus 222 ~~S~Kl-~~L~~ll~~l~~--------~~~KvlIFs~~~~~l~~L~~~L~~~----gi~~~~i~G~~~~~~R~~~i~~F~ 288 (404)
..|||. .+++..+..+.. .+..+||-+...+....+...+.+. ++....++|+.+.......+ +
T Consensus 137 TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l---~ 213 (519)
T KOG0331|consen 137 TGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDL---E 213 (519)
T ss_pred cCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHH---h
Confidence 457875 345566655543 3678999999999988888877643 45578899999876554444 3
Q ss_pred CCCCceEEEeeccc-----cccCCCCCCCCEEEE
Q psy1089 289 GSTEWGVFLLSTRA-----GGQGLNLTAADTCIL 317 (404)
Q Consensus 289 ~~~~~~vlLis~~a-----~g~GlnL~~a~~VI~ 317 (404)
.+ +.|++.++.- -.--++|..+.++++
T Consensus 214 ~g--vdiviaTPGRl~d~le~g~~~l~~v~ylVL 245 (519)
T KOG0331|consen 214 RG--VDVVIATPGRLIDLLEEGSLNLSRVTYLVL 245 (519)
T ss_pred cC--CcEEEeCChHHHHHHHcCCccccceeEEEe
Confidence 33 5566655442 112356777888776
No 263
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=25.17 E-value=5.8e+02 Score=23.98 Aligned_cols=71 Identities=14% Similarity=0.129 Sum_probs=50.6
Q ss_pred HHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHh-cCCceE-eccCCcCHHHHHHHHHHHhCCCCceEEEee
Q psy1089 228 IVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVL-ENYNYY-RLHGSIRNEERNDAVQQFNGSTEWGVFLLS 299 (404)
Q Consensus 228 ~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~-~gi~~~-~i~G~~~~~~R~~~i~~F~~~~~~~vlLis 299 (404)
..+.+++......+.++-++.....+++.+.+.|+. .|+.++ ..+|-...++...+++.-+... ..++++.
T Consensus 92 dl~~~ll~~~~~~~~~v~llG~~~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~~e~~~i~~~I~~s~-~dil~Vg 164 (243)
T PRK03692 92 DLWEALMARAGKEGTPVFLVGGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERIHASG-AKIVTVA 164 (243)
T ss_pred HHHHHHHHHHHhcCCeEEEECCCHHHHHHHHHHHHHHhCCEEEEEeCCCCCHHHHHHHHHHHHhcC-CCEEEEE
Confidence 455566665556678999999999999988888853 377765 4578887777777787777653 5556554
No 264
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=24.87 E-value=2.7e+02 Score=20.12 Aligned_cols=59 Identities=10% Similarity=0.189 Sum_probs=37.9
Q ss_pred eEEEEecc-hHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccc
Q psy1089 243 KTLVFSTM-VKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRA 302 (404)
Q Consensus 243 KvlIFs~~-~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a 302 (404)
++.||+.. -........+|...|+++..++=......+.+..+. .......++++....
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~-~g~~~vP~v~i~~~~ 61 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEER-TGSSVVPQIFFNEKL 61 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHH-hCCCCcCEEEECCEE
Confidence 57777665 345677888899999999888766555545544443 333345666666443
No 265
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=24.48 E-value=1.2e+02 Score=23.02 Aligned_cols=38 Identities=8% Similarity=0.117 Sum_probs=29.8
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhcCCc-eEeccCCcC
Q psy1089 239 QTNHKTLVFSTMVKVLNFIEELCVLENYN-YYRLHGSIR 276 (404)
Q Consensus 239 ~~~~KvlIFs~~~~~l~~L~~~L~~~gi~-~~~i~G~~~ 276 (404)
..+.+++|+|..-.........|...|+. +..+.|+..
T Consensus 54 ~~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~~ 92 (96)
T cd01444 54 DRDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGFE 92 (96)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCHH
Confidence 35678999999777778888899988885 567788753
No 266
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=24.42 E-value=3.2e+02 Score=21.96 Aligned_cols=35 Identities=14% Similarity=0.066 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHH
Q psy1089 253 VLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQF 287 (404)
Q Consensus 253 ~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F 287 (404)
-+.++...|+..|+.+..+...+|.++-.+.+.+.
T Consensus 15 G~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~ 49 (119)
T cd02067 15 GKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEE 49 (119)
T ss_pred HHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc
Confidence 35677888888888887777778876665555544
No 267
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=24.34 E-value=2.7e+02 Score=25.44 Aligned_cols=50 Identities=20% Similarity=0.159 Sum_probs=35.0
Q ss_pred HHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHH
Q psy1089 229 VLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEER 280 (404)
Q Consensus 229 ~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R 280 (404)
...++...+...-++|.||.+. ..+.+.+.+...++.++.+||..+.+.-
T Consensus 41 ~a~~i~~~~~~~~~~VgVf~~~--~~~~i~~~~~~~~~d~vQLHG~e~~~~~ 90 (207)
T PRK13958 41 QIKKLASAVPNHIDKVCVVVNP--DLTTIEHILSNTSINTIQLHGTESIDFI 90 (207)
T ss_pred HHHHHHHhCCCCCCEEEEEeCC--CHHHHHHHHHhCCCCEEEECCCCCHHHH
Confidence 3344444433334689999754 5577778888889999999999887543
No 268
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=23.97 E-value=2.2e+02 Score=24.33 Aligned_cols=46 Identities=17% Similarity=0.164 Sum_probs=33.4
Q ss_pred HHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCC-ceEeccCCcC
Q psy1089 230 LNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENY-NYYRLHGSIR 276 (404)
Q Consensus 230 L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi-~~~~i~G~~~ 276 (404)
|.+.+..+ ..+..+||+|............|...|+ ++..+.|++.
T Consensus 39 l~~~l~~l-~~~~~vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~~ 85 (145)
T cd01535 39 LAQALEKL-PAAERYVLTCGSSLLARFAAADLAALTVKPVFVLEGGTA 85 (145)
T ss_pred HHHHHHhc-CCCCCEEEEeCCChHHHHHHHHHHHcCCcCeEEecCcHH
Confidence 33444443 3457899999987777777778888888 6788899874
No 269
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=23.76 E-value=4.3e+02 Score=23.43 Aligned_cols=55 Identities=15% Similarity=0.149 Sum_probs=34.1
Q ss_pred HHHHHhhhCC--CeEEEEecc--------hHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCC
Q psy1089 232 QLLHKLKQTN--HKTLVFSTM--------VKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGS 290 (404)
Q Consensus 232 ~ll~~l~~~~--~KvlIFs~~--------~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~ 290 (404)
+.+.++.+.+ ++++|+|+. ...++.+++.| |+++.+..-..| ....++++.|...
T Consensus 66 ~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~l---gIpvl~h~~kKP-~~~~~i~~~~~~~ 130 (168)
T PF09419_consen 66 EWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKAL---GIPVLRHRAKKP-GCFREILKYFKCQ 130 (168)
T ss_pred HHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhh---CCcEEEeCCCCC-ccHHHHHHHHhhc
Confidence 3344444432 489999997 34455555554 678766554455 5567888888654
No 270
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=23.72 E-value=2.8e+02 Score=22.01 Aligned_cols=36 Identities=11% Similarity=0.178 Sum_probs=27.6
Q ss_pred CCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCc
Q psy1089 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSI 275 (404)
Q Consensus 240 ~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~ 275 (404)
.+.+++++|..-.........|...|+.-+...|++
T Consensus 57 ~~~~vvlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~ 92 (101)
T TIGR02981 57 KNDTVKLYCNAGRQSGMAKDILLDMGYTHAENAGGI 92 (101)
T ss_pred CCCeEEEEeCCCHHHHHHHHHHHHcCCCeEEecCCH
Confidence 456788999887777777888989998766555764
No 271
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=23.30 E-value=3e+02 Score=25.11 Aligned_cols=53 Identities=19% Similarity=0.104 Sum_probs=36.2
Q ss_pred HHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHH
Q psy1089 230 LNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAV 284 (404)
Q Consensus 230 L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i 284 (404)
+.++...+...-.+|.||... ..+.+.+.++..++.++.+||..+.+.-..+-
T Consensus 44 a~~i~~~~~~~i~~VgVf~~~--~~~~i~~~~~~~~~d~vQLHg~e~~~~~~~l~ 96 (210)
T PRK01222 44 AAELAAALPPFVKVVGVFVNA--SDEEIDEIVETVPLDLLQLHGDETPEFCRQLK 96 (210)
T ss_pred HHHHHHhCCCCCCEEEEEeCC--CHHHHHHHHHhcCCCEEEECCCCCHHHHHHHH
Confidence 344444333335688899864 45677777888999999999998876544333
No 272
>PRK14873 primosome assembly protein PriA; Provisional
Probab=23.26 E-value=1.7e+02 Score=32.04 Aligned_cols=67 Identities=15% Similarity=0.134 Sum_probs=38.1
Q ss_pred CCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecc----ccccCCCCCCCCEEEEec-------CCCCch-----hHH
Q psy1089 265 NYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTR----AGGQGLNLTAADTCILYD-------SDWNPQ-----VDI 328 (404)
Q Consensus 265 gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~----a~g~GlnL~~a~~VI~~d-------~~wnp~-----~~~ 328 (404)
+.++.++++. .+++.|.. +..++ +.|+ ...-|+ ..|+++| +++... ...
T Consensus 453 ~~~V~r~d~d-------~~l~~~~~--~~~Il-VGTqgaepm~~g~~-----~lV~ildaD~~L~~pDfRA~Er~~qll~ 517 (665)
T PRK14873 453 GVPVVTSGGD-------QVVDTVDA--GPALV-VATPGAEPRVEGGY-----GAALLLDAWALLGRQDLRAAEDTLRRWM 517 (665)
T ss_pred CCCEEEEChH-------HHHHhhcc--CCCEE-EECCCCcccccCCc-----eEEEEEcchhhhcCCCcChHHHHHHHHH
Confidence 5566666653 47888864 34444 4454 232133 4444443 444432 335
Q ss_pred HHHHhhhccCCCCcEEEE
Q psy1089 329 QAEARCHRIGQTKPVCIY 346 (404)
Q Consensus 329 Qa~gR~~R~Gq~~~V~Vy 346 (404)
|+.||++|-+....|-|-
T Consensus 518 qvagragr~~~~G~V~iq 535 (665)
T PRK14873 518 AAAALVRPRADGGQVVVV 535 (665)
T ss_pred HHHHhhcCCCCCCEEEEE
Confidence 999999997766666654
No 273
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=22.94 E-value=4.2e+02 Score=30.96 Aligned_cols=80 Identities=16% Similarity=0.178 Sum_probs=56.3
Q ss_pred ccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCC-CCceEEEee
Q psy1089 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGS-TEWGVFLLS 299 (404)
Q Consensus 221 ~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~-~~~~vlLis 299 (404)
-..+||-.. -.|..+. .+..+||.+.....+.--...|...|+++..+.|+++..++..++..+... ..+.+++++
T Consensus 483 PTGSGKSLc--YQLPAL~-~~GiTLVISPLiSLmqDQV~~L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvT 559 (1195)
T PLN03137 483 PTGGGKSLT--YQLPALI-CPGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVT 559 (1195)
T ss_pred CCCccHHHH--HHHHHHH-cCCcEEEEeCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEC
Confidence 345777643 2333333 345789999988876544445566899999999999999999998887652 247788888
Q ss_pred cccc
Q psy1089 300 TRAG 303 (404)
Q Consensus 300 ~~a~ 303 (404)
+...
T Consensus 560 PERL 563 (1195)
T PLN03137 560 PEKV 563 (1195)
T ss_pred hHHh
Confidence 7653
No 274
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=22.82 E-value=2.1e+02 Score=23.01 Aligned_cols=38 Identities=8% Similarity=-0.073 Sum_probs=28.3
Q ss_pred hCCCeEEEEecch-HHHHHHHHHHHhcCCc-eEeccCCcC
Q psy1089 239 QTNHKTLVFSTMV-KVLNFIEELCVLENYN-YYRLHGSIR 276 (404)
Q Consensus 239 ~~~~KvlIFs~~~-~~l~~L~~~L~~~gi~-~~~i~G~~~ 276 (404)
..+..+++||... .........|...|++ +..++|+..
T Consensus 77 ~~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~ 116 (122)
T cd01448 77 SNDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQ 116 (122)
T ss_pred CCCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHH
Confidence 3567889999883 6666677788888976 667788764
No 275
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=22.76 E-value=1.2e+02 Score=23.56 Aligned_cols=37 Identities=14% Similarity=0.075 Sum_probs=28.2
Q ss_pred CCCeEEEEecchHHHHHHHHHHHhcCCc-eEeccCCcC
Q psy1089 240 TNHKTLVFSTMVKVLNFIEELCVLENYN-YYRLHGSIR 276 (404)
Q Consensus 240 ~~~KvlIFs~~~~~l~~L~~~L~~~gi~-~~~i~G~~~ 276 (404)
.+..+|+||............|...|+. +..++|++.
T Consensus 65 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~~ 102 (106)
T cd01519 65 KDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSWL 102 (106)
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcHH
Confidence 4678999998876667777888888985 556777763
No 276
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=22.44 E-value=1.2e+02 Score=23.68 Aligned_cols=36 Identities=17% Similarity=0.126 Sum_probs=27.2
Q ss_pred CCeEEEEecchHHHHHHHHHHHhcCCc-eEeccCCcC
Q psy1089 241 NHKTLVFSTMVKVLNFIEELCVLENYN-YYRLHGSIR 276 (404)
Q Consensus 241 ~~KvlIFs~~~~~l~~L~~~L~~~gi~-~~~i~G~~~ 276 (404)
+..++|+|............|...|+. +..+.|+..
T Consensus 65 ~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~ 101 (105)
T cd01525 65 GKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGIN 101 (105)
T ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHH
Confidence 567899998766666677788888986 566888764
No 277
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=22.30 E-value=5.7e+02 Score=28.06 Aligned_cols=105 Identities=10% Similarity=0.048 Sum_probs=61.3
Q ss_pred HHHHHHhhhCCCeEEEEecc-------------hHHHHHHHHHHHhcCCceEeccCC--------------------cCH
Q psy1089 231 NQLLHKLKQTNHKTLVFSTM-------------VKVLNFIEELCVLENYNYYRLHGS--------------------IRN 277 (404)
Q Consensus 231 ~~ll~~l~~~~~KvlIFs~~-------------~~~l~~L~~~L~~~gi~~~~i~G~--------------------~~~ 277 (404)
.+.+..+...|.+++.++.. +......-+.|+..|+.+..++|. .++
T Consensus 414 ~~~~~~~a~~G~~~l~va~~~~~lG~i~l~D~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elGId~v~A~~~P 493 (679)
T PRK01122 414 DAAVDEVARKGGTPLVVAEDNRVLGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDDFLAEATP 493 (679)
T ss_pred HHHHHHHHhCCCcEEEEEECCeEEEEEEEeccCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCcEEEccCCH
Confidence 33444455566677766542 122223334567778877776665 778
Q ss_pred HHHHHHHHHHhCCCCceEEEeecc---------cc------ccCCCC-CCCCEEEEecCCCCchhHHHHHHhhhcc
Q psy1089 278 EERNDAVQQFNGSTEWGVFLLSTR---------AG------GQGLNL-TAADTCILYDSDWNPQVDIQAEARCHRI 337 (404)
Q Consensus 278 ~~R~~~i~~F~~~~~~~vlLis~~---------a~------g~GlnL-~~a~~VI~~d~~wnp~~~~Qa~gR~~R~ 337 (404)
+++.++++.+++... .|. +..+ .+ |.|-+. ..|..+|++|.....-.+.-.+||--.+
T Consensus 494 edK~~iV~~lQ~~G~-~Va-MtGDGvNDAPALa~ADVGIAMgsGTdvAkeAADiVLldd~~s~Iv~av~~GR~~~~ 567 (679)
T PRK01122 494 EDKLALIRQEQAEGR-LVA-MTGDGTNDAPALAQADVGVAMNSGTQAAKEAGNMVDLDSNPTKLIEVVEIGKQLLM 567 (679)
T ss_pred HHHHHHHHHHHHcCC-eEE-EECCCcchHHHHHhCCEeEEeCCCCHHHHHhCCEEEeCCCHHHHHHHHHHHHHHHh
Confidence 889999999987632 222 2221 12 233333 2466677778776666666677776543
No 278
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=22.24 E-value=2.2e+02 Score=23.98 Aligned_cols=48 Identities=8% Similarity=-0.070 Sum_probs=30.4
Q ss_pred HHHHHHHHh-hhCCCeEEEEecc---hHHHHHHHHHHHhcCCc-eEeccCCcC
Q psy1089 229 VLNQLLHKL-KQTNHKTLVFSTM---VKVLNFIEELCVLENYN-YYRLHGSIR 276 (404)
Q Consensus 229 ~L~~ll~~l-~~~~~KvlIFs~~---~~~l~~L~~~L~~~gi~-~~~i~G~~~ 276 (404)
.+.+++..+ ...+..|||||.. ....-.+.-.|+..|.+ +..++|+.+
T Consensus 82 ~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~ 134 (138)
T cd01445 82 EFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFF 134 (138)
T ss_pred HHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHH
Confidence 455555544 3456789999964 33344555567778876 557888764
No 279
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=21.97 E-value=4e+02 Score=26.52 Aligned_cols=49 Identities=12% Similarity=0.113 Sum_probs=36.7
Q ss_pred CCCeEEEEec-chHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhC
Q psy1089 240 TNHKTLVFST-MVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG 289 (404)
Q Consensus 240 ~~~KvlIFs~-~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~ 289 (404)
.+.+++|||. .-.........|...|+.+..+.|+...- |...++.+..
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa~~L~~~G~~v~~L~GG~~aw-r~~~~~~~~~ 136 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQQWLKEAGIDVPRLEGGYKAY-RRFVIDTLEE 136 (345)
T ss_pred CCCeEEEEECCCChHHHHHHHHHHHcCCCcEEEcCCHHHH-HHhhHHHHhh
Confidence 5778999996 33446667788889999999999998764 4555566664
No 280
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=21.61 E-value=1.6e+02 Score=23.45 Aligned_cols=42 Identities=5% Similarity=-0.088 Sum_probs=29.6
Q ss_pred HHHHHHHHhhhCCCeEEEEecchH-HHHHHHHHHHhcCCceEe
Q psy1089 229 VLNQLLHKLKQTNHKTLVFSTMVK-VLNFIEELCVLENYNYYR 270 (404)
Q Consensus 229 ~L~~ll~~l~~~~~KvlIFs~~~~-~l~~L~~~L~~~gi~~~~ 270 (404)
-..+.+..+.+.|.+++++++... .-+.+.+.|+..|+++..
T Consensus 18 ga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~ 60 (101)
T PF13344_consen 18 GAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDE 60 (101)
T ss_dssp THHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--G
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCc
Confidence 345667777788999999999864 447788888999988643
No 281
>PRK07920 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=21.56 E-value=7.2e+02 Score=23.77 Aligned_cols=42 Identities=5% Similarity=-0.011 Sum_probs=29.3
Q ss_pred HHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCc
Q psy1089 234 LHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSI 275 (404)
Q Consensus 234 l~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~ 275 (404)
+....+.|+.+|+++.+-...+.....+...+.++..+.-..
T Consensus 100 l~~a~~~gkgvIllt~H~GnwE~~~~~l~~~~~~~~~vyr~~ 141 (298)
T PRK07920 100 LDAALAAGRGVVLALPHSGNWDMAGAWLVQHHGPFTTVAERL 141 (298)
T ss_pred HHHHHhcCCCeEEEecCCCHHHHHHHHHHHcCCCeEEEEecc
Confidence 444445778889998888888888777776666655554433
No 282
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=21.31 E-value=5.7e+02 Score=26.29 Aligned_cols=87 Identities=11% Similarity=0.169 Sum_probs=60.8
Q ss_pred CCeEEEEecchHHHHHHHHHHHhcCCc--eEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEe
Q psy1089 241 NHKTLVFSTMVKVLNFIEELCVLENYN--YYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILY 318 (404)
Q Consensus 241 ~~KvlIFs~~~~~l~~L~~~L~~~gi~--~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~ 318 (404)
...+-++||+-.+...+...+...|+. ++.=.|+...-.-...++-|.+++.++++++..
T Consensus 150 ~G~valvsqSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~d~~~~d~l~~l~~D~~t~~I~ly~------------------ 211 (447)
T TIGR02717 150 KGGIAFISQSGALLTALLDWAEKNGVGFSYFVSLGNKADIDESDLLEYLADDPDTKVILLYL------------------ 211 (447)
T ss_pred CCCEEEEechHHHHHHHHHHHHhcCCCcceEEECCchhhCCHHHHHHHHhhCCCCCEEEEEe------------------
Confidence 346999999999888888888766554 455566655556678899999988888776653
Q ss_pred cCCCCchhHHHHHHhhhccCCCCcEEEEEE
Q psy1089 319 DSDWNPQVDIQAEARCHRIGQTKPVCIYRL 348 (404)
Q Consensus 319 d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~L 348 (404)
+.--++..+..+..|+.| .|+|-+|+-
T Consensus 212 E~~~~~~~f~~aa~~a~~---~KPVv~~k~ 238 (447)
T TIGR02717 212 EGIKDGRKFLKTAREISK---KKPIVVLKS 238 (447)
T ss_pred cCCCCHHHHHHHHHHHcC---CCCEEEEec
Confidence 333456667777666654 577777653
No 283
>PRK00254 ski2-like helicase; Provisional
Probab=21.09 E-value=3.1e+02 Score=30.06 Aligned_cols=58 Identities=14% Similarity=0.086 Sum_probs=42.7
Q ss_pred ccCCcHHHHH-HHHHHHhhhCCCeEEEEecchHHHHHHHHHHH---hcCCceEeccCCcCHH
Q psy1089 221 VSSSGKMIVL-NQLLHKLKQTNHKTLVFSTMVKVLNFIEELCV---LENYNYYRLHGSIRNE 278 (404)
Q Consensus 221 ~~~S~Kl~~L-~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~---~~gi~~~~i~G~~~~~ 278 (404)
...|||..+. ..++..+...+.++|+.+.....+.-....+. ..|+.+..++|..+..
T Consensus 47 pTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~ 108 (720)
T PRK00254 47 PTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDST 108 (720)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCc
Confidence 3459998766 56666666677899999998887766655554 4588889999988753
No 284
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=21.04 E-value=1.8e+02 Score=21.40 Aligned_cols=38 Identities=13% Similarity=0.140 Sum_probs=28.8
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhcCCc-eEeccCCcC
Q psy1089 239 QTNHKTLVFSTMVKVLNFIEELCVLENYN-YYRLHGSIR 276 (404)
Q Consensus 239 ~~~~KvlIFs~~~~~l~~L~~~L~~~gi~-~~~i~G~~~ 276 (404)
..+.++||+|............|...|+. +..+.|+..
T Consensus 48 ~~~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~ 86 (89)
T cd00158 48 DKDKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGML 86 (89)
T ss_pred CCCCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCChh
Confidence 46789999998877778888888888754 556777763
No 285
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=21.02 E-value=4.8e+02 Score=26.14 Aligned_cols=72 Identities=7% Similarity=0.077 Sum_probs=47.2
Q ss_pred CCcHHHHHHHHHHHhhhCCCeEEEEecc----hHHHHHHHHHHHhcCCceEeccCC---cCHHHHHHHHHHHhCCCCceE
Q psy1089 223 SSGKMIVLNQLLHKLKQTNHKTLVFSTM----VKVLNFIEELCVLENYNYYRLHGS---IRNEERNDAVQQFNGSTEWGV 295 (404)
Q Consensus 223 ~S~Kl~~L~~ll~~l~~~~~KvlIFs~~----~~~l~~L~~~L~~~gi~~~~i~G~---~~~~~R~~~i~~F~~~~~~~v 295 (404)
..+.+..|-+.+..+ ..+|++|.+.. ...++.+...|+..|+.+..++|- -+.+.-.+.++.++... +.+
T Consensus 15 G~g~~~~l~~~~~~~--g~~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~-~D~ 91 (383)
T PRK09860 15 GADSLTDAMNMMADY--GFTRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENN-CDS 91 (383)
T ss_pred CcCHHHHHHHHHHhc--CCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcC-CCE
Confidence 356666666666543 22688877643 235678888899899988888773 45566677777777653 444
Q ss_pred EE
Q psy1089 296 FL 297 (404)
Q Consensus 296 lL 297 (404)
+|
T Consensus 92 Ii 93 (383)
T PRK09860 92 VI 93 (383)
T ss_pred EE
Confidence 44
No 286
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=21.00 E-value=3.5e+02 Score=20.01 Aligned_cols=60 Identities=8% Similarity=0.109 Sum_probs=35.7
Q ss_pred CCCeEEEEecch-HHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecc
Q psy1089 240 TNHKTLVFSTMV-KVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTR 301 (404)
Q Consensus 240 ~~~KvlIFs~~~-~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~ 301 (404)
...+|.||+... .........|...|+++..++=..... ... +........+.++++...
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~-~~~-~~~~~g~~~vP~i~i~g~ 66 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDAR-GRS-LRAVTGATTVPQVFIGGK 66 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChH-HHH-HHHHHCCCCcCeEEECCE
Confidence 456788887653 346778888899999998876433322 222 333222235666666544
No 287
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=21.00 E-value=5.2e+02 Score=28.65 Aligned_cols=63 Identities=13% Similarity=0.133 Sum_probs=41.5
Q ss_pred ccCCcHHHHHH-HHHHHhhhCCCeEEEEecchHHHH----HHHHHHHhcCCceEeccCCcCHHHHHHHH
Q psy1089 221 VSSSGKMIVLN-QLLHKLKQTNHKTLVFSTMVKVLN----FIEELCVLENYNYYRLHGSIRNEERNDAV 284 (404)
Q Consensus 221 ~~~S~Kl~~L~-~ll~~l~~~~~KvlIFs~~~~~l~----~L~~~L~~~gi~~~~i~G~~~~~~R~~~i 284 (404)
-..+||.-+.. .++... -.|..|+|.+....... .+...++..|+++..+.|+++.++|..+.
T Consensus 77 ~TGeGKTLva~lpa~l~a-L~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y 144 (745)
T TIGR00963 77 KTGEGKTLTATLPAYLNA-LTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAY 144 (745)
T ss_pred cCCCccHHHHHHHHHHHH-HhCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhc
Confidence 45688875432 332111 24778999988766544 44445567799999999999987766554
No 288
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=20.63 E-value=1.9e+02 Score=27.58 Aligned_cols=87 Identities=14% Similarity=0.160 Sum_probs=56.6
Q ss_pred cCCcCHHHHHHHHHHHh-CCCCceEEEeeccc--cccCCC-C------CCCCEEEEecCCCCchhHHHHHHhhhccCCCC
Q psy1089 272 HGSIRNEERNDAVQQFN-GSTEWGVFLLSTRA--GGQGLN-L------TAADTCILYDSDWNPQVDIQAEARCHRIGQTK 341 (404)
Q Consensus 272 ~G~~~~~~R~~~i~~F~-~~~~~~vlLis~~a--~g~Gln-L------~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~ 341 (404)
..+++..+-.+.+..++ ...+++++|++--. -..|+. + .+++-+|+-|+|+.-.......-+. .
T Consensus 66 ~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~~------~ 139 (259)
T PF00290_consen 66 KNGFTLEKIFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAKK------H 139 (259)
T ss_dssp HTT--HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHHH------T
T ss_pred HCCCCHHHHHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHH------c
Confidence 34455555666777777 55567777777542 445654 1 3678899999998766555443322 3
Q ss_pred cEEEEEEEeCCCHHHHHHHHHhc
Q psy1089 342 PVCIYRLVSHSTYQVHLFTIDSS 364 (404)
Q Consensus 342 ~V~Vy~Li~~~TiEe~i~~~~~~ 364 (404)
.+....|+++.|-+++|-..++.
T Consensus 140 gl~~I~lv~p~t~~~Ri~~i~~~ 162 (259)
T PF00290_consen 140 GLDLIPLVAPTTPEERIKKIAKQ 162 (259)
T ss_dssp T-EEEEEEETTS-HHHHHHHHHH
T ss_pred CCeEEEEECCCCCHHHHHHHHHh
Confidence 48899999999999999998764
No 289
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=20.27 E-value=6.3e+02 Score=22.64 Aligned_cols=49 Identities=10% Similarity=0.043 Sum_probs=38.1
Q ss_pred CCeEEEEecchHH----HHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhC
Q psy1089 241 NHKTLVFSTMVKV----LNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG 289 (404)
Q Consensus 241 ~~KvlIFs~~~~~----l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~ 289 (404)
..++|++|-..+. +.++...|+..|+.+..+-..+|.++-.+.+.+.+.
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~p 136 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEKP 136 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCC
Confidence 4688888765333 567888999999999999889998887777776653
No 290
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=20.21 E-value=7.3e+02 Score=25.55 Aligned_cols=80 Identities=13% Similarity=0.213 Sum_probs=50.2
Q ss_pred ccCCcHHHHHHHHHHHhhhCCCeEEEEecch---HHHHHHHHHHHhcCCceEeccC-CcCHHHHHHHHHHHhCCCCceEE
Q psy1089 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMV---KVLNFIEELCVLENYNYYRLHG-SIRNEERNDAVQQFNGSTEWGVF 296 (404)
Q Consensus 221 ~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~---~~l~~L~~~L~~~gi~~~~i~G-~~~~~~R~~~i~~F~~~~~~~vl 296 (404)
...+||-..+..+...+...|.+|++.+.-+ ...+.+..+-...++++....+ ..+..-....+..+... ++.++
T Consensus 108 ~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~~-~~DvV 186 (429)
T TIGR01425 108 LQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKKE-NFDII 186 (429)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHhC-CCCEE
Confidence 4679999999999888877888998886533 3344444445556777665443 33333344456666553 25566
Q ss_pred Eeecc
Q psy1089 297 LLSTR 301 (404)
Q Consensus 297 Lis~~ 301 (404)
|+.|.
T Consensus 187 iIDTa 191 (429)
T TIGR01425 187 IVDTS 191 (429)
T ss_pred EEECC
Confidence 66543
Done!