Query psy1089
Match_columns 404
No_of_seqs 244 out of 2472
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 21:03:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1089.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1089hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z5z_A Helicase of the SNF2/RA 100.0 5E-47 1.7E-51 362.2 21.6 198 182-402 66-264 (271)
2 3mwy_W Chromo domain-containin 100.0 2.3E-42 7.9E-47 375.5 18.5 247 1-368 447-700 (800)
3 1z3i_X Similar to RAD54-like; 100.0 1.5E-41 5.1E-46 361.0 24.3 272 1-403 287-569 (644)
4 1z63_A Helicase of the SNF2/RA 100.0 5.2E-38 1.8E-42 323.5 21.6 258 2-402 233-493 (500)
5 3hgt_A HDA1 complex subunit 3; 100.0 3.2E-34 1.1E-38 276.1 20.4 173 183-363 68-248 (328)
6 1wp9_A ATP-dependent RNA helic 99.9 1.6E-22 5.4E-27 204.0 11.9 142 222-368 340-491 (494)
7 3dmq_A RNA polymerase-associat 99.9 1E-21 3.6E-26 216.9 19.4 148 220-369 484-632 (968)
8 2fwr_A DNA repair protein RAD2 99.8 3.7E-21 1.3E-25 196.3 8.3 134 224-366 334-468 (472)
9 1t5i_A C_terminal domain of A 99.8 1.8E-19 6.1E-24 159.9 14.8 137 219-362 11-147 (172)
10 2hjv_A ATP-dependent RNA helic 99.8 1.6E-19 5.6E-24 158.5 13.9 138 218-363 14-151 (163)
11 2jgn_A DBX, DDX3, ATP-dependen 99.8 9.6E-20 3.3E-24 163.6 11.8 145 215-364 21-167 (185)
12 2p6n_A ATP-dependent RNA helic 99.8 1.4E-19 4.9E-24 163.4 11.8 130 216-352 32-161 (191)
13 1fuk_A Eukaryotic initiation f 99.8 9.6E-19 3.3E-23 153.8 13.9 128 222-355 12-140 (165)
14 2rb4_A ATP-dependent RNA helic 99.7 5.4E-18 1.8E-22 150.4 12.1 124 225-354 20-149 (175)
15 3eaq_A Heat resistant RNA depe 99.7 1.4E-17 4.7E-22 152.7 14.5 126 221-352 13-138 (212)
16 2yjt_D ATP-dependent RNA helic 99.6 2.4E-19 8.3E-24 158.5 0.0 131 224-362 15-145 (170)
17 4a2p_A RIG-I, retinoic acid in 99.7 5.6E-18 1.9E-22 175.1 8.1 135 223-363 370-518 (556)
18 3i32_A Heat resistant RNA depe 99.7 1.8E-16 6.1E-21 152.9 13.8 127 221-353 10-136 (300)
19 3tbk_A RIG-I helicase domain; 99.7 2.7E-17 9.2E-22 169.7 7.6 130 223-357 369-512 (555)
20 1xti_A Probable ATP-dependent 99.7 5.8E-16 2E-20 152.9 16.0 136 221-363 232-367 (391)
21 4a2q_A RIG-I, retinoic acid in 99.7 3.9E-17 1.3E-21 177.3 8.1 135 223-363 611-759 (797)
22 4a2w_A RIG-I, retinoic acid in 99.7 1E-16 3.6E-21 176.6 11.6 131 223-359 611-756 (936)
23 2j0s_A ATP-dependent RNA helic 99.6 1.3E-15 4.4E-20 151.8 12.9 124 224-353 261-384 (410)
24 1s2m_A Putative ATP-dependent 99.6 4.7E-15 1.6E-19 147.1 15.6 128 220-353 239-366 (400)
25 2db3_A ATP-dependent RNA helic 99.6 3.9E-15 1.3E-19 150.6 15.2 136 221-363 283-421 (434)
26 2i4i_A ATP-dependent RNA helic 99.6 3.1E-15 1.1E-19 149.1 13.9 140 220-364 256-397 (417)
27 1hv8_A Putative ATP-dependent 99.6 2.2E-15 7.7E-20 146.9 12.5 127 221-354 221-347 (367)
28 3eiq_A Eukaryotic initiation f 99.6 3E-15 1E-19 148.9 11.5 124 223-352 264-387 (414)
29 3pey_A ATP-dependent RNA helic 99.6 7E-15 2.4E-19 144.9 13.8 133 224-363 228-366 (395)
30 4gl2_A Interferon-induced heli 99.6 2.4E-15 8.1E-20 160.5 8.8 127 223-355 379-522 (699)
31 3fht_A ATP-dependent RNA helic 99.6 2E-14 6.9E-19 142.7 14.9 133 224-363 251-389 (412)
32 2oca_A DAR protein, ATP-depend 99.6 5.2E-15 1.8E-19 152.2 10.7 136 223-360 329-466 (510)
33 2ykg_A Probable ATP-dependent 99.6 3E-15 1E-19 159.6 8.3 128 223-356 378-520 (696)
34 2z0m_A 337AA long hypothetical 99.6 2.6E-15 8.9E-20 144.9 7.1 116 239-361 218-333 (337)
35 1oyw_A RECQ helicase, ATP-depe 99.5 7.2E-14 2.5E-18 144.7 14.4 121 221-345 218-338 (523)
36 1fuu_A Yeast initiation factor 99.5 3.5E-15 1.2E-19 147.3 1.5 122 225-352 245-366 (394)
37 3sqw_A ATP-dependent RNA helic 99.5 2.1E-13 7.1E-18 142.7 15.1 129 228-362 273-406 (579)
38 3i5x_A ATP-dependent RNA helic 99.5 2.8E-13 9.7E-18 140.9 15.1 119 239-363 337-458 (563)
39 2v1x_A ATP-dependent DNA helic 99.5 1.9E-13 6.6E-18 143.4 13.9 119 226-346 250-370 (591)
40 3h1t_A Type I site-specific re 99.5 2.3E-13 7.8E-18 142.7 11.9 109 240-349 438-558 (590)
41 3oiy_A Reverse gyrase helicase 99.4 6.8E-13 2.3E-17 132.6 13.4 116 224-349 238-362 (414)
42 1tf5_A Preprotein translocase 99.4 1.5E-12 5.1E-17 139.1 10.9 117 222-342 413-537 (844)
43 3fmp_B ATP-dependent RNA helic 99.4 8.2E-14 2.8E-18 142.2 0.9 122 224-351 318-445 (479)
44 3jux_A Protein translocase sub 99.4 4E-12 1.4E-16 133.4 13.3 118 222-343 455-580 (822)
45 1c4o_A DNA nucleotide excision 99.3 7.6E-12 2.6E-16 133.0 13.7 125 224-353 422-551 (664)
46 3fho_A ATP-dependent RNA helic 99.3 6.9E-13 2.4E-17 136.7 4.6 123 223-351 341-469 (508)
47 2d7d_A Uvrabc system protein B 99.3 1.2E-11 4.1E-16 131.4 13.9 126 224-354 428-558 (661)
48 2fsf_A Preprotein translocase 99.3 1.3E-11 4.5E-16 131.6 12.3 117 222-342 422-575 (853)
49 2xgj_A ATP-dependent RNA helic 99.3 1.8E-11 6.3E-16 135.4 13.6 135 229-365 330-512 (1010)
50 1nkt_A Preprotein translocase 99.2 3.7E-11 1.3E-15 128.6 12.5 117 222-342 441-609 (922)
51 2va8_A SSO2462, SKI2-type heli 99.2 8.4E-11 2.9E-15 125.9 14.3 120 232-353 243-409 (715)
52 2p6r_A Afuhel308 helicase; pro 99.2 4.9E-11 1.7E-15 127.5 11.6 118 237-356 238-392 (702)
53 3l9o_A ATP-dependent RNA helic 99.2 4.4E-11 1.5E-15 133.6 11.4 137 227-365 426-610 (1108)
54 2zj8_A DNA helicase, putative 99.2 8.9E-11 3E-15 125.9 12.4 120 237-358 233-393 (720)
55 2eyq_A TRCF, transcription-rep 99.2 7.2E-11 2.5E-15 132.4 11.7 123 225-352 797-922 (1151)
56 3rc3_A ATP-dependent RNA helic 99.1 1.6E-10 5.6E-15 122.6 12.5 109 242-351 321-444 (677)
57 1yks_A Genome polyprotein [con 99.1 6.7E-11 2.3E-15 119.8 6.4 97 238-341 174-290 (440)
58 2jlq_A Serine protease subunit 99.1 3E-10 1E-14 115.2 9.8 96 239-341 186-301 (451)
59 4a4z_A Antiviral helicase SKI2 99.1 6.6E-10 2.2E-14 123.0 13.0 133 225-362 322-502 (997)
60 1gm5_A RECG; helicase, replica 99.0 8.4E-11 2.9E-15 126.6 4.5 120 224-345 561-692 (780)
61 2z83_A Helicase/nucleoside tri 99.0 1.4E-10 4.7E-15 118.1 5.5 105 240-352 189-313 (459)
62 2wv9_A Flavivirin protease NS2 99.0 4.1E-10 1.4E-14 119.6 8.6 98 237-341 406-524 (673)
63 2whx_A Serine protease/ntpase/ 99.0 2.7E-10 9.3E-15 120.0 6.8 105 238-350 352-476 (618)
64 2xau_A PRE-mRNA-splicing facto 99.0 2.6E-10 8.7E-15 123.1 6.4 110 240-354 302-445 (773)
65 1gku_B Reverse gyrase, TOP-RG; 99.0 3.3E-10 1.1E-14 126.1 7.4 89 223-321 260-352 (1054)
66 4ddu_A Reverse gyrase; topoiso 99.0 1.1E-09 3.6E-14 122.4 10.3 88 225-322 296-388 (1104)
67 2v6i_A RNA helicase; membrane, 99.0 8.2E-10 2.8E-14 111.4 8.4 97 239-342 169-282 (431)
68 3o8b_A HCV NS3 protease/helica 98.8 3.1E-09 1.1E-13 112.0 7.4 101 240-354 395-516 (666)
69 2w00_A HSDR, R.ECOR124I; ATP-b 98.3 5.7E-06 2E-10 91.6 13.5 108 240-350 536-707 (1038)
70 4f92_B U5 small nuclear ribonu 98.2 4.1E-06 1.4E-10 97.2 10.7 116 240-357 316-478 (1724)
71 4f92_B U5 small nuclear ribonu 98.1 5.8E-06 2E-10 96.0 10.1 121 239-363 1153-1317(1724)
72 2ipc_A Preprotein translocase 97.3 0.0013 4.4E-08 70.9 11.7 121 222-346 424-694 (997)
73 2vl7_A XPD; helicase, unknown 96.9 0.0034 1.2E-07 64.7 10.1 109 228-343 370-514 (540)
74 4a15_A XPD helicase, ATP-depen 93.9 0.26 8.8E-06 51.5 10.6 114 228-346 434-580 (620)
75 1gm5_A RECG; helicase, replica 91.2 1.1 3.7E-05 48.1 11.2 98 221-319 397-498 (780)
76 3oiy_A Reverse gyrase helicase 90.9 1.2 4.1E-05 43.3 10.5 96 221-317 44-145 (414)
77 4ddu_A Reverse gyrase; topoiso 83.9 3.2 0.00011 46.3 9.5 96 221-317 101-202 (1104)
78 2eyq_A TRCF, transcription-rep 80.5 7.3 0.00025 43.6 10.9 96 221-317 632-731 (1151)
79 3fe2_A Probable ATP-dependent 76.7 23 0.00078 31.2 11.2 92 221-317 74-182 (242)
80 1t6n_A Probable ATP-dependent 76.2 27 0.00092 30.1 11.4 93 222-318 60-165 (220)
81 2oxc_A Probable ATP-dependent 74.3 18 0.00062 31.7 9.8 91 221-317 69-172 (230)
82 3ber_A Probable ATP-dependent 74.0 30 0.001 30.8 11.3 92 221-317 88-192 (249)
83 3crv_A XPD/RAD3 related DNA he 73.3 24 0.00083 35.7 11.7 89 227-323 378-474 (551)
84 1gku_B Reverse gyrase, TOP-RG; 72.6 13 0.00044 41.1 10.0 94 221-317 79-181 (1054)
85 1wp9_A ATP-dependent RNA helic 72.5 21 0.00072 34.3 10.6 90 222-317 32-131 (494)
86 2l82_A Designed protein OR32; 72.4 11 0.00037 29.7 6.6 47 244-290 5-51 (162)
87 2pl3_A Probable ATP-dependent 69.3 30 0.001 30.2 10.1 90 222-317 71-177 (236)
88 3iuy_A Probable ATP-dependent 67.8 23 0.00078 30.8 8.9 92 221-317 65-173 (228)
89 1xti_A Probable ATP-dependent 65.1 49 0.0017 30.9 11.3 92 222-317 54-158 (391)
90 3g5j_A Putative ATP/GTP bindin 64.6 11 0.00039 29.7 5.7 51 226-277 74-126 (134)
91 2gxq_A Heat resistant RNA depe 64.0 41 0.0014 28.4 9.7 91 222-317 47-150 (207)
92 3ly5_A ATP-dependent RNA helic 62.7 70 0.0024 28.5 11.4 91 222-317 100-207 (262)
93 1qde_A EIF4A, translation init 60.8 24 0.00082 30.4 7.6 91 221-317 59-161 (224)
94 4a2p_A RIG-I, retinoic acid in 60.5 19 0.00064 35.8 7.7 92 222-318 31-137 (556)
95 2v1x_A ATP-dependent DNA helic 58.7 33 0.0011 35.2 9.2 80 221-303 67-147 (591)
96 3ipz_A Monothiol glutaredoxin- 58.2 45 0.0015 25.6 8.0 69 231-301 8-82 (109)
97 3zyw_A Glutaredoxin-3; metal b 58.1 46 0.0016 25.8 8.1 68 232-301 7-80 (111)
98 3tbk_A RIG-I helicase domain; 57.0 14 0.00049 36.6 6.0 91 222-317 28-133 (555)
99 2yan_A Glutaredoxin-3; oxidore 57.0 52 0.0018 24.8 8.1 66 232-299 8-79 (105)
100 2lqo_A Putative glutaredoxin R 56.9 34 0.0012 25.8 6.8 57 242-298 4-61 (92)
101 4a2q_A RIG-I, retinoic acid in 56.7 23 0.00079 37.6 7.9 92 221-317 271-377 (797)
102 1oyw_A RECQ helicase, ATP-depe 55.6 34 0.0012 34.4 8.6 78 222-303 49-126 (523)
103 3nhm_A Response regulator; pro 54.2 64 0.0022 24.5 8.5 94 239-338 25-123 (133)
104 3gx8_A Monothiol glutaredoxin- 53.6 69 0.0024 25.2 8.6 68 232-301 7-83 (121)
105 2db3_A ATP-dependent RNA helic 53.3 63 0.0022 31.2 10.0 92 221-317 101-209 (434)
106 3gk5_A Uncharacterized rhodane 51.5 14 0.00049 28.4 4.0 38 239-276 53-90 (108)
107 1u6t_A SH3 domain-binding glut 49.1 27 0.00092 28.1 5.3 34 255-288 20-53 (121)
108 1wrb_A DJVLGB; RNA helicase, D 47.7 1.4E+02 0.0048 26.0 10.6 91 222-317 69-180 (253)
109 1vec_A ATP-dependent RNA helic 47.5 1.2E+02 0.0042 25.2 10.1 91 222-317 49-152 (206)
110 1hv8_A Putative ATP-dependent 47.0 1E+02 0.0036 28.1 10.1 90 222-317 53-153 (367)
111 4b3f_X DNA-binding protein smu 46.3 36 0.0012 35.1 7.2 50 223-272 215-264 (646)
112 3hix_A ALR3790 protein; rhodan 45.4 32 0.0011 26.2 5.2 38 239-276 50-88 (106)
113 1fuu_A Yeast initiation factor 45.1 1E+02 0.0034 28.7 9.7 90 222-317 67-168 (394)
114 1t1v_A SH3BGRL3, SH3 domain-bi 44.1 46 0.0016 24.5 5.7 57 243-299 3-67 (93)
115 2i4i_A ATP-dependent RNA helic 43.7 1.5E+02 0.0051 27.8 10.8 92 221-317 60-181 (417)
116 3foj_A Uncharacterized protein 43.7 20 0.00068 27.0 3.6 37 240-276 55-91 (100)
117 2wem_A Glutaredoxin-related pr 43.3 1.2E+02 0.004 23.8 8.4 59 242-301 20-85 (118)
118 1q0u_A Bstdead; DEAD protein, 43.1 30 0.001 29.8 5.2 91 222-317 50-156 (219)
119 1wik_A Thioredoxin-like protei 43.0 74 0.0025 24.2 7.0 58 241-299 14-77 (109)
120 2wul_A Glutaredoxin related pr 42.9 1.2E+02 0.0042 23.9 8.4 59 242-301 20-85 (118)
121 1s2m_A Putative ATP-dependent 42.6 1.5E+02 0.005 27.7 10.5 93 222-319 67-171 (400)
122 3i42_A Response regulator rece 42.2 38 0.0013 25.7 5.2 94 240-339 26-124 (127)
123 3dmn_A Putative DNA helicase; 42.1 1.2E+02 0.0043 25.1 8.9 77 229-322 49-125 (174)
124 3dkp_A Probable ATP-dependent 41.6 46 0.0016 29.1 6.3 91 221-317 74-181 (245)
125 2jtq_A Phage shock protein E; 41.4 49 0.0017 23.8 5.4 44 232-275 31-75 (85)
126 3eme_A Rhodanese-like domain p 40.6 20 0.0007 27.1 3.2 37 240-276 55-91 (103)
127 3iwh_A Rhodanese-like domain p 40.1 21 0.00072 27.4 3.2 36 240-275 55-90 (103)
128 3b6e_A Interferon-induced heli 40.0 28 0.00095 29.5 4.4 76 222-302 57-142 (216)
129 2wci_A Glutaredoxin-4; redox-a 39.7 90 0.0031 25.2 7.2 58 242-300 35-98 (135)
130 3eqz_A Response regulator; str 39.7 1E+02 0.0034 23.3 7.4 74 266-339 47-127 (135)
131 3sxu_A DNA polymerase III subu 38.5 42 0.0014 27.9 5.1 38 224-261 22-59 (150)
132 1wv9_A Rhodanese homolog TT165 38.4 28 0.00095 25.8 3.6 35 242-276 54-88 (94)
133 2z0m_A 337AA long hypothetical 37.9 1.8E+02 0.0061 26.1 10.0 87 222-317 40-135 (337)
134 2j0s_A ATP-dependent RNA helic 37.5 2.3E+02 0.0079 26.4 11.1 92 221-317 82-185 (410)
135 1gmx_A GLPE protein; transfera 37.4 41 0.0014 25.5 4.6 38 239-276 56-94 (108)
136 4a2w_A RIG-I, retinoic acid in 37.2 56 0.0019 35.5 7.1 92 221-317 271-377 (936)
137 2oca_A DAR protein, ATP-depend 36.4 41 0.0014 33.2 5.5 89 222-319 137-232 (510)
138 3cg4_A Response regulator rece 35.9 1.4E+02 0.0049 22.7 9.1 93 241-337 31-127 (142)
139 1rif_A DAR protein, DNA helica 35.5 64 0.0022 29.0 6.3 75 222-304 137-216 (282)
140 4gl2_A Interferon-induced heli 33.5 13 0.00046 38.4 1.4 91 222-317 31-142 (699)
141 2fsx_A RV0390, COG0607: rhodan 32.4 59 0.002 26.3 5.0 38 239-276 78-116 (148)
142 3qmx_A Glutaredoxin A, glutare 32.3 1.5E+02 0.0051 22.1 7.1 62 240-301 14-76 (99)
143 3bor_A Human initiation factor 32.1 1.8E+02 0.006 25.1 8.6 92 222-317 76-179 (237)
144 3vnd_A TSA, tryptophan synthas 32.0 1.9E+02 0.0066 26.2 8.9 129 230-364 5-170 (267)
145 2gk6_A Regulator of nonsense t 31.9 93 0.0032 31.9 7.5 51 223-273 205-256 (624)
146 2ykg_A Probable ATP-dependent 31.7 86 0.003 32.2 7.3 92 222-318 37-143 (696)
147 3ilm_A ALR3790 protein; rhodan 31.6 56 0.0019 26.4 4.7 38 239-276 54-92 (141)
148 2lnd_A De novo designed protei 31.5 1.6E+02 0.0053 21.8 8.1 61 228-289 38-100 (112)
149 3flh_A Uncharacterized protein 31.3 26 0.00088 27.6 2.5 37 240-276 70-108 (124)
150 3h5i_A Response regulator/sens 31.1 1.8E+02 0.006 22.3 8.7 91 240-336 28-123 (140)
151 1nsj_A PRAI, phosphoribosyl an 30.7 2.1E+02 0.0071 24.8 8.6 50 228-279 41-90 (205)
152 2hhg_A Hypothetical protein RP 30.6 40 0.0014 26.8 3.6 38 239-276 84-122 (139)
153 2j48_A Two-component sensor ki 30.5 88 0.003 22.7 5.5 88 240-335 24-116 (119)
154 3fmo_B ATP-dependent RNA helic 28.7 1.1E+02 0.0038 27.9 6.8 90 221-318 139-242 (300)
155 2ct6_A SH3 domain-binding glut 28.2 85 0.0029 24.1 5.0 46 242-287 8-60 (111)
156 3nav_A Tryptophan synthase alp 28.2 3.1E+02 0.011 24.8 9.7 83 276-364 80-172 (271)
157 3nhv_A BH2092 protein; alpha-b 27.9 40 0.0014 27.4 3.2 37 240-276 71-109 (144)
158 2k0z_A Uncharacterized protein 27.3 66 0.0023 24.5 4.2 38 239-276 54-91 (110)
159 2q5c_A NTRC family transcripti 27.2 2.2E+02 0.0077 24.3 8.1 116 241-363 4-140 (196)
160 1qxn_A SUD, sulfide dehydrogen 27.2 43 0.0015 26.9 3.2 38 239-276 80-118 (137)
161 3h5i_A Response regulator/sens 26.8 1.3E+02 0.0046 23.0 6.2 62 241-308 5-68 (140)
162 2yxb_A Coenzyme B12-dependent 26.7 1.9E+02 0.0066 23.8 7.4 57 240-300 17-77 (161)
163 3d1p_A Putative thiosulfate su 26.3 57 0.0019 25.9 3.8 37 240-276 90-127 (139)
164 1tq1_A AT5G66040, senescence-a 26.1 43 0.0015 26.5 3.0 38 239-276 80-118 (129)
165 3to5_A CHEY homolog; alpha(5)b 25.5 1.9E+02 0.0065 23.0 6.9 24 243-266 14-37 (134)
166 3eiq_A Eukaryotic initiation f 25.3 3.2E+02 0.011 25.3 9.7 93 221-317 85-189 (414)
167 2wjy_A Regulator of nonsense t 25.0 1.3E+02 0.0046 31.9 7.4 51 223-273 381-432 (800)
168 3a10_A Response regulator; pho 24.7 2E+02 0.0069 20.8 8.1 89 240-335 24-115 (116)
169 2xzl_A ATP-dependent helicase 24.2 1.2E+02 0.0041 32.3 6.8 51 223-273 385-436 (802)
170 1urh_A 3-mercaptopyruvate sulf 23.1 75 0.0026 28.6 4.4 48 228-275 72-122 (280)
171 2fz4_A DNA repair protein RAD2 23.1 1.6E+02 0.0055 25.7 6.6 52 222-276 117-169 (237)
172 3dm5_A SRP54, signal recogniti 22.9 4.5E+02 0.015 25.7 10.2 78 222-300 109-190 (443)
173 3tg1_B Dual specificity protei 22.2 57 0.0019 26.8 3.1 35 241-275 93-136 (158)
174 2rdm_A Response regulator rece 21.4 2.3E+02 0.0079 21.0 6.6 23 317-339 103-125 (132)
175 4a4z_A Antiviral helicase SKI2 21.3 1.7E+02 0.0057 32.0 7.4 56 221-276 62-119 (997)
176 1tf5_A Preprotein translocase 21.1 6.7E+02 0.023 26.8 11.7 89 221-317 104-209 (844)
177 2fsf_A Preprotein translocase 21.0 4.3E+02 0.015 28.3 10.1 75 221-303 95-174 (853)
178 3grc_A Sensor protein, kinase; 21.0 2.7E+02 0.0093 20.9 8.3 95 240-338 29-128 (140)
179 1e0c_A Rhodanese, sulfurtransf 20.9 1.1E+02 0.0038 27.2 5.0 49 228-276 67-118 (271)
180 2fwr_A DNA repair protein RAD2 20.5 1.7E+02 0.0059 28.2 6.7 53 221-276 116-169 (472)
181 3hzu_A Thiosulfate sulfurtrans 20.5 1.3E+02 0.0043 27.9 5.5 48 228-275 97-147 (318)
182 3lua_A Response regulator rece 20.0 2.9E+02 0.0098 20.8 7.4 93 240-338 28-128 (140)
No 1
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=100.00 E-value=5e-47 Score=362.19 Aligned_cols=198 Identities=28% Similarity=0.404 Sum_probs=161.9
Q ss_pred hhHHHHHHHHHHHhCCCCccccCCcccCCCcccccccccccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHH
Q psy1089 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELC 261 (404)
Q Consensus 182 ~~l~~~l~~Lr~ic~hP~L~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L 261 (404)
..+++.+++||++|+||+++... ......|+|+..|.++|..+...++|+||||++..+++.|+..|
T Consensus 66 ~~~l~~l~~Lrq~~~hP~l~~~~-------------~~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L 132 (271)
T 1z5z_A 66 GMILSTLLKLKQIVDHPALLKGG-------------EQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNII 132 (271)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHCS-------------CCCSTTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHhcCC-------------ccccccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHH
Confidence 45788899999999999987631 12355699999999999999888999999999999999999999
Q ss_pred Hhc-CCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCC
Q psy1089 262 VLE-NYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQT 340 (404)
Q Consensus 262 ~~~-gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~ 340 (404)
... |+++.+++|+++..+|++++++|++++++.|+|+++++||+||||+.|++||+||+||||..+.||+||+||+||+
T Consensus 133 ~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~ 212 (271)
T 1z5z_A 133 EKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQT 212 (271)
T ss_dssp HHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC-------------
T ss_pred HHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCC
Confidence 875 9999999999999999999999999977889999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEEeCCCHHHHHHHHHhcCCccccchhhhcccccccccccCcceecccHHHHHhhh
Q psy1089 341 KPVCIYRLVSHSTYQVHLFTIDSSGSVSWSSQSVKEKLPIGFMCVTGSFLKSSSFFTYLQTY 402 (404)
Q Consensus 341 ~~V~Vy~Li~~~TiEe~i~~~~~~K~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 402 (404)
++|+||+|++.+|+||+|++++..|. .+...++....+.+..+|.+++..|+
T Consensus 213 ~~v~v~~li~~~TiEe~i~~~~~~K~----------~l~~~~~~~~~~~~~~~~~~~l~~l~ 264 (271)
T 1z5z_A 213 RNVIVHKLISVGTLEEKIDQLLAFKR----------SLFKDIISSGDSWITELSTEELRKVI 264 (271)
T ss_dssp -CCEEEEEEETTSHHHHHHHHHHHCH----------HHHTTGGGGTTHHHHTSCHHHHHHHH
T ss_pred CceEEEEEeeCCCHHHHHHHHHHHHH----------HHHHHHHccCchhhhcCCHHHHHHHh
Confidence 99999999999999999999987773 33444555555567788888887765
No 2
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-42 Score=375.53 Aligned_cols=247 Identities=37% Similarity=0.611 Sum_probs=209.5
Q ss_pred CcccccchhhhhhhchhhccCCCCeeEEEecCCCHHHHHHHHHHHhhhhhhhhhhHHhhhccccccCCCCCCCCCcccch
Q psy1089 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTIGENREQVAEYFNTTVNTSSSSDSSGNESYIW 80 (404)
Q Consensus 1 l~~ll~pf~LRR~K~~V~~~LP~K~~~~v~~~lt~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (404)
|+.+|+||||||+|.+|..+||+|.+.+++|+||+.|+++|..++.+........
T Consensus 447 L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~------------------------- 501 (800)
T 3mwy_W 447 LHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAG------------------------- 501 (800)
T ss_dssp HHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC------------------------------
T ss_pred HHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhc-------------------------
Confidence 4678999999999999999999999999999999999999999986642111000
Q ss_pred hccccccccccccccccccccccchhhccccchhccccccccchhHHhhhhhhccccCCCCchhhhhhhhhccccCCCCC
Q psy1089 81 FSEESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEPCENSS 160 (404)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (404)
T Consensus 502 -------------------------------------------------------------------------------- 501 (800)
T 3mwy_W 502 -------------------------------------------------------------------------------- 501 (800)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcchhhhhhHHHhhhhhhhHHHHHHHHHHHhCCCCccccCCcccCCC------cccccccccccCCcHHHHHHHHH
Q psy1089 161 NAQDVPSAEEKNVDEILHHVNVKMTNVTMVLRNIISHPYLINKPYRIVDGK------KEMVCDENIVSSSGKMIVLNQLL 234 (404)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~ic~hP~L~~~~~~~~~~~------~~~~~~~~~~~~S~Kl~~L~~ll 234 (404)
.......+++.++.||++|+||+++.......... ........++..|+|+..|.++|
T Consensus 502 ----------------~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL 565 (800)
T 3mwy_W 502 ----------------AKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLL 565 (800)
T ss_dssp ---------------------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHH
T ss_pred ----------------cccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHH
Confidence 00112357888999999999999986532211000 00011223466899999999999
Q ss_pred HHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCC-CceEEEeeccccccCCCCCCCC
Q psy1089 235 HKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGST-EWGVFLLSTRAGGQGLNLTAAD 313 (404)
Q Consensus 235 ~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~-~~~vlLis~~a~g~GlnL~~a~ 313 (404)
..+...|+|+||||+++.++++|+.+|...|+++.+++|+++..+|++++++|++++ ...++|+|+++||+||||+.|+
T Consensus 566 ~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~ 645 (800)
T 3mwy_W 566 TRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTAD 645 (800)
T ss_dssp HHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCC
T ss_pred HHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccc
Confidence 999999999999999999999999999999999999999999999999999999876 4568999999999999999999
Q ss_pred EEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHhcCCcc
Q psy1089 314 TCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDSSGSVS 368 (404)
Q Consensus 314 ~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~~K~~~ 368 (404)
+||+||++|||..+.||+||+||+||+++|+||+|+++||+||+|++++..|...
T Consensus 646 ~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~~l 700 (800)
T 3mwy_W 646 TVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMIL 700 (800)
T ss_dssp EEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHTTS
T ss_pred eEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988643
No 3
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.5e-41 Score=360.96 Aligned_cols=272 Identities=27% Similarity=0.419 Sum_probs=219.7
Q ss_pred CcccccchhhhhhhchhhccCCCCeeEEEecCCCHHHHHHHHHHHhhhhhhhhhhHHhhhccccccCCCCCCCCCcccch
Q psy1089 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTIGENREQVAEYFNTTVNTSSSSDSSGNESYIW 80 (404)
Q Consensus 1 l~~ll~pf~LRR~K~~V~~~LP~K~~~~v~~~lt~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (404)
|+.++.||||||+|.+|...||+|.+.+++|+||+.|+++|+.+++........
T Consensus 287 L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~-------------------------- 340 (644)
T 1z3i_X 287 LISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESL-------------------------- 340 (644)
T ss_dssp HHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSS--------------------------
T ss_pred HHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHH--------------------------
Confidence 457899999999999999999999999999999999999999998654110000
Q ss_pred hccccccccccccccccccccccchhhccccchhccccccccchhHHhhhhhhccccCCCCchhhhhhhhhccccCCCCC
Q psy1089 81 FSEESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEPCENSS 160 (404)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (404)
.
T Consensus 341 -------------~------------------------------------------------------------------ 341 (644)
T 1z3i_X 341 -------------Q------------------------------------------------------------------ 341 (644)
T ss_dssp -------------C------------------------------------------------------------------
T ss_pred -------------h------------------------------------------------------------------
Confidence 0
Q ss_pred CCCCCcchhhhhhHHHhhhhhhhHHHHHHHHHHHhCCCCccccCCcccCC---------CcccccccccccCCcHHHHHH
Q psy1089 161 NAQDVPSAEEKNVDEILHHVNVKMTNVTMVLRNIISHPYLINKPYRIVDG---------KKEMVCDENIVSSSGKMIVLN 231 (404)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~ic~hP~L~~~~~~~~~~---------~~~~~~~~~~~~~S~Kl~~L~ 231 (404)
........+..++.||++|+||.++......... .............|+|+..+.
T Consensus 342 ----------------~g~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~ 405 (644)
T 1z3i_X 342 ----------------TGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLD 405 (644)
T ss_dssp ----------------TTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHH
T ss_pred ----------------cCccchhHHHHHHHHHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHH
Confidence 0001134567789999999999987532110000 000111112234699999999
Q ss_pred HHHHHhhh-CCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCC-ceEEEeeccccccCCCC
Q psy1089 232 QLLHKLKQ-TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTE-WGVFLLSTRAGGQGLNL 309 (404)
Q Consensus 232 ~ll~~l~~-~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~-~~vlLis~~a~g~GlnL 309 (404)
.++..+.. .++|+||||++..+++.|+..|...|+.+.+++|+++..+|++++++|++++. ..++|+++++||+||||
T Consensus 406 ~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl 485 (644)
T 1z3i_X 406 YILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNL 485 (644)
T ss_dssp HHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCC
T ss_pred HHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCccc
Confidence 99998764 68999999999999999999999999999999999999999999999999864 45899999999999999
Q ss_pred CCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHhcCCccccchhhhcccccccccccCcc
Q psy1089 310 TAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDSSGSVSWSSQSVKEKLPIGFMCVTGSF 389 (404)
Q Consensus 310 ~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~~K~~~~~~~~~~~~l~~~~~~~~~~~ 389 (404)
++|++||+||++|||..+.||+||+||+||+++|+||+|++.||+||+|++++..| ..+...++......
T Consensus 486 ~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K----------~~l~~~v~~~~~~~ 555 (644)
T 1z3i_X 486 IGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHK----------KALSSCVVDEEQDV 555 (644)
T ss_dssp TTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHH----------HHTSCCCCSCSSSC
T ss_pred ccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHHHHHHHHHHH----------HHHHHHHhcCcchh
Confidence 99999999999999999999999999999999999999999999999999997765 34444555555556
Q ss_pred eecccHHHHHhhhc
Q psy1089 390 LKSSSFFTYLQTYV 403 (404)
Q Consensus 390 ~~~~~~~~~~~~~~ 403 (404)
...++.+.+..||-
T Consensus 556 ~~~~~~~~l~~Lf~ 569 (644)
T 1z3i_X 556 ERHFSLGELRELFS 569 (644)
T ss_dssp CCSSCHHHHHHHTC
T ss_pred hcCCCHHHHHHHhC
Confidence 67788888877663
No 4
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=5.2e-38 Score=323.50 Aligned_cols=258 Identities=28% Similarity=0.404 Sum_probs=214.7
Q ss_pred cccccchhhhhhhch--hhccCCCCeeEEEecCCCHHHHHHHHHHHhhhhhhhhhhHHhhhccccccCCCCCCCCCcccc
Q psy1089 2 HNILKPFFLRRLKCD--VNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTIGENREQVAEYFNTTVNTSSSSDSSGNESYI 79 (404)
Q Consensus 2 ~~ll~pf~LRR~K~~--V~~~LP~K~~~~v~~~lt~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (404)
+.++.||++||+|.+ +..+||++.+.+++|+|++.|+++|+.+...........
T Consensus 233 ~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~------------------------ 288 (500)
T 1z63_A 233 KAIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSV------------------------ 288 (500)
T ss_dssp HHHHTTTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTC------------------------
T ss_pred HHHHhhHeeeecccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhh------------------------
Confidence 467899999999986 778999999999999999999999999886542111000
Q ss_pred hhccccccccccccccccccccccchhhccccchhccccccccchhHHhhhhhhccccCCCCchhhhhhhhhccccCCCC
Q psy1089 80 WFSEESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEPCENS 159 (404)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (404)
T Consensus 289 -------------------------------------------------------------------------------- 288 (500)
T 1z63_A 289 -------------------------------------------------------------------------------- 288 (500)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCcchhhhhhHHHhhhhhhhHHHHHHHHHHHhCCCCccccCCcccCCCcccccccccccCCcHHHHHHHHHHHhhh
Q psy1089 160 SNAQDVPSAEEKNVDEILHHVNVKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQ 239 (404)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lr~ic~hP~L~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~ll~~l~~ 239 (404)
. .......++..+..||++|+||.+..... .....|+|+..+.+++..+..
T Consensus 289 ------~----------~~~~~~~~~~~l~~lr~~~~~p~l~~~~~-------------~~~~~s~K~~~l~~~l~~~~~ 339 (500)
T 1z63_A 289 ------T----------GIKRKGMILSTLLKLKQIVDHPALLKGGE-------------QSVRRSGKMIRTMEIIEEALD 339 (500)
T ss_dssp ------C----------THHHHHHHHHHHHHHHHHTTCTHHHHCSC-------------CCSTTCHHHHHHHHHHHHHHT
T ss_pred ------h----------cccchHHHHHHHHHHHHHhCCHHHhcCcc-------------chhhcchhHHHHHHHHHHHHc
Confidence 0 00112346777899999999998876421 234568999999999999988
Q ss_pred CCCeEEEEecchHHHHHHHHHHHhc-CCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEe
Q psy1089 240 TNHKTLVFSTMVKVLNFIEELCVLE-NYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILY 318 (404)
Q Consensus 240 ~~~KvlIFs~~~~~l~~L~~~L~~~-gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~ 318 (404)
.++|+||||++..+++.+...|... |+.+..++|+++..+|++++++|++++.+.++|++++++|+|+|++.|++||++
T Consensus 340 ~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~ 419 (500)
T 1z63_A 340 EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHF 419 (500)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEES
T ss_pred cCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEe
Confidence 9999999999999999999999875 999999999999999999999999997678899999999999999999999999
Q ss_pred cCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHhcCCccccchhhhcccccccccccCcceecccHHHH
Q psy1089 319 DSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDSSGSVSWSSQSVKEKLPIGFMCVTGSFLKSSSFFTY 398 (404)
Q Consensus 319 d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~~K~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 398 (404)
|++|||..+.||+||+||+||+++|+||+|++.+|+||+|+++++.|. .+...++....+....++.+++
T Consensus 420 d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~tiee~i~~~~~~K~----------~l~~~~~~~~~~~~~~~~~~~l 489 (500)
T 1z63_A 420 DRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKR----------SLFKDIISSGDSWITELSTEEL 489 (500)
T ss_dssp SCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSHHHHTHHHHTTCS----------SSSSSGGGSTTGGGGSSCHHHH
T ss_pred CCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCHHHHHHHHHHHHH----------HHHHHHhhcCcchhccCCHHHH
Confidence 999999999999999999999999999999999999999999988775 3444555555566777888888
Q ss_pred Hhhh
Q psy1089 399 LQTY 402 (404)
Q Consensus 399 ~~~~ 402 (404)
..++
T Consensus 490 ~~l~ 493 (500)
T 1z63_A 490 RKVI 493 (500)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7664
No 5
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=100.00 E-value=3.2e-34 Score=276.13 Aligned_cols=173 Identities=18% Similarity=0.207 Sum_probs=135.4
Q ss_pred hHHHHHHHHHHHhCCCCccccCCcccCCCcccccccccccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHH
Q psy1089 183 KMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCV 262 (404)
Q Consensus 183 ~l~~~l~~Lr~ic~hP~L~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~ 262 (404)
.+.+.+++||+||+||+|+......... ........+++.|||+.+|.++|..+.+.|+||||||++++++|+|+.+|.
T Consensus 68 sl~nli~qLRkicnHP~L~~d~~~p~~~-~~~~~~~~l~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~ 146 (328)
T 3hgt_A 68 SMKTMCLNGSLVATHPYLLIDHYMPKSL-ITRDVPAHLAENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLL 146 (328)
T ss_dssp HHHHHHHHHHHHHHCGGGTCCTTCCSCS-CSTTHHHHHHHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCChhhhccccCCccc-cccchhhHHHHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHh
Confidence 5788899999999999998543322211 111224557789999999999999999999999999999999999999999
Q ss_pred hcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCC-----CCCCCEEEEecCCCCchhH-HHHHHhhhc
Q psy1089 263 LENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLN-----LTAADTCILYDSDWNPQVD-IQAEARCHR 336 (404)
Q Consensus 263 ~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~Gln-----L~~a~~VI~~d~~wnp~~~-~Qa~gR~~R 336 (404)
..|+.+.|++|+....+ ++. . ..++.++|+ +.+||.|+| ++.|+.||.||++|||... .||+.|+||
T Consensus 147 ~~~~~y~RlDG~~~~~~-~k~-~----~~~~~i~Ll-tsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R 219 (328)
T 3hgt_A 147 GNKVHIKRYDGHSIKSA-AAA-N----DFSCTVHLF-SSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKR 219 (328)
T ss_dssp TSSCEEEESSSCCC-------------CCSEEEEEE-ESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC-
T ss_pred cCCCceEeCCCCchhhh-hhc-c----cCCceEEEE-ECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhh
Confidence 99999999999965532 221 1 224677776 457777776 8999999999999999998 999999999
Q ss_pred c--CCCCcEEEEEEEeCCCHHHHHHHHHh
Q psy1089 337 I--GQTKPVCIYRLVSHSTYQVHLFTIDS 363 (404)
Q Consensus 337 ~--Gq~~~V~Vy~Li~~~TiEe~i~~~~~ 363 (404)
+ ||+++|.||||++.+||||.++..-+
T Consensus 220 ~~~gq~k~v~V~RLvt~~TiEh~~l~~~~ 248 (328)
T 3hgt_A 220 ERKGLERYAPIVRLVAINSIDHCRLFFGK 248 (328)
T ss_dssp --------CCEEEEEETTSHHHHHHHHHH
T ss_pred hccCCCCcceEEEEeCCCCHHHHHHHccC
Confidence 9 68999999999999999999999855
No 6
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.87 E-value=1.6e-22 Score=204.02 Aligned_cols=142 Identities=18% Similarity=0.244 Sum_probs=126.2
Q ss_pred cCCcHHHHHHHHHHHhh--hCCCeEEEEecchHHHHHHHHHHHhcCCceEeccC--------CcCHHHHHHHHHHHhCCC
Q psy1089 222 SSSGKMIVLNQLLHKLK--QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHG--------SIRNEERNDAVQQFNGST 291 (404)
Q Consensus 222 ~~S~Kl~~L~~ll~~l~--~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G--------~~~~~~R~~~i~~F~~~~ 291 (404)
..++|+..|.+++.... ..+.|+||||++...++.+...|...|+.+..++| +++..+|+++++.|++++
T Consensus 340 ~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~ 419 (494)
T 1wp9_A 340 LDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGE 419 (494)
T ss_dssp CSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTS
T ss_pred CCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCC
Confidence 56889999999999876 57899999999999999999999999999999999 999999999999999986
Q ss_pred CceEEEeeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHhcCCcc
Q psy1089 292 EWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDSSGSVS 368 (404)
Q Consensus 292 ~~~vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~~K~~~ 368 (404)
+. +|++|+++|+|+|++.+++||++|++|||..+.||+||+||.|+ +.+|+|++++|+||.++.++..|+..
T Consensus 420 -~~-vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~ 491 (494)
T 1wp9_A 420 -FN-VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP---GRVIILMAKGTRDEAYYWSSRQKEKI 491 (494)
T ss_dssp -CS-EEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC---SEEEEEEETTSHHHHHHHHCC-----
T ss_pred -ce-EEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC---ceEEEEEecCCHHHHHHHHHHHHHHH
Confidence 44 57778999999999999999999999999999999999999998 89999999999999999998887643
No 7
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.87 E-value=1e-21 Score=216.91 Aligned_cols=148 Identities=22% Similarity=0.213 Sum_probs=135.5
Q ss_pred cccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHh-cCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEe
Q psy1089 220 IVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVL-ENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLL 298 (404)
Q Consensus 220 ~~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~-~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLi 298 (404)
.+..++|+..|.+++.. ..+.|+||||++...++.+...|.. .|+++..+||+++..+|.++++.|+++++...+|+
T Consensus 484 ~~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLv 561 (968)
T 3dmq_A 484 WWNFDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLL 561 (968)
T ss_dssp TTTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEE
T ss_pred ccCccHHHHHHHHHHHh--CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEE
Confidence 34568999999999986 4688999999999999999999994 69999999999999999999999999963345667
Q ss_pred eccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHhcCCccc
Q psy1089 299 STRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDSSGSVSW 369 (404)
Q Consensus 299 s~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~~K~~~~ 369 (404)
+|+++++|+|++.+++||++|+||||..+.|++||+||.||++.|.||++++.+|+|++|++.+..|....
T Consensus 562 aT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~ 632 (968)
T 3dmq_A 562 CSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAF 632 (968)
T ss_dssp CSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCS
T ss_pred ecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCce
Confidence 88999999999999999999999999999999999999999999999999999999999999998876544
No 8
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.83 E-value=3.7e-21 Score=196.25 Aligned_cols=134 Identities=17% Similarity=0.299 Sum_probs=112.4
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecccc
Q psy1089 224 SGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAG 303 (404)
Q Consensus 224 S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~ 303 (404)
++|+..|.+++.. ..++++||||++...++.+...|. +..++|+++..+|+++++.|+++. +. +|++|+++
T Consensus 334 ~~k~~~l~~~l~~--~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g~-~~-vLv~T~~~ 404 (472)
T 2fwr_A 334 KNKIRKLREILER--HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGR-FR-AIVSSQVL 404 (472)
T ss_dssp SHHHHHHHHHHHH--TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSS-CS-BCBCSSCC
T ss_pred hHHHHHHHHHHHh--CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCCC-CC-EEEEcCch
Confidence 6899999999987 468899999999999999999883 567999999999999999999975 44 46788999
Q ss_pred ccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCC-CcEEEEEEEeCCCHHHHHHHHHhcCC
Q psy1089 304 GQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQT-KPVCIYRLVSHSTYQVHLFTIDSSGS 366 (404)
Q Consensus 304 g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~-~~V~Vy~Li~~~TiEe~i~~~~~~K~ 366 (404)
++|+|++.+++||++|++||+..+.|++||++|.||. +.|.||.|++++|+||.+.++.+.|.
T Consensus 405 ~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~~~ 468 (472)
T 2fwr_A 405 DEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGTGEVNTARRRKNAA 468 (472)
T ss_dssp CSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC------------
T ss_pred hcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCchHHHHHHHHHhh
Confidence 9999999999999999999999999999999999998 78999999999999999999977653
No 9
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.82 E-value=1.8e-19 Score=159.87 Aligned_cols=137 Identities=21% Similarity=0.264 Sum_probs=116.8
Q ss_pred ccccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEe
Q psy1089 219 NIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLL 298 (404)
Q Consensus 219 ~~~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLi 298 (404)
..+..+.|+..|.+++... .+.++||||++...++.+...|...|+++..+||+++..+|..+++.|+++. +. +|+
T Consensus 11 ~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~-~~-vLv 86 (172)
T 1t5i_A 11 VKLKDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ-RR-ILV 86 (172)
T ss_dssp EECCGGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS-CS-EEE
T ss_pred EECChHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC-Cc-EEE
Confidence 3445678999999999865 5679999999999999999999999999999999999999999999999885 44 567
Q ss_pred eccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHH
Q psy1089 299 STRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTID 362 (404)
Q Consensus 299 s~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~ 362 (404)
+|+++++|+|++.+++||+||+||++..|.|++||++|.|+... ++.|++.. -|...+...
T Consensus 87 aT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~--~~~~~~~~-~~~~~~~~l 147 (172)
T 1t5i_A 87 ATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL--AITFVSDE-NDAKILNDV 147 (172)
T ss_dssp ESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCE--EEEEECSH-HHHHHHHHH
T ss_pred ECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcE--EEEEEcCh-hHHHHHHHH
Confidence 78999999999999999999999999999999999999998754 45555543 244444443
No 10
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.81 E-value=1.6e-19 Score=158.47 Aligned_cols=138 Identities=17% Similarity=0.284 Sum_probs=118.0
Q ss_pred cccccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEE
Q psy1089 218 ENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFL 297 (404)
Q Consensus 218 ~~~~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL 297 (404)
......+.|+..|.+++... .+.++||||++...++.+...|...|+++..+||+++..+|..+++.|+++. +. +|
T Consensus 14 ~~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~-~~-vl 89 (163)
T 2hjv_A 14 VIQVREENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGE-YR-YL 89 (163)
T ss_dssp EEECCGGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS-CS-EE
T ss_pred EEECChHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC-Ce-EE
Confidence 33455688999999999864 5679999999999999999999999999999999999999999999999985 44 56
Q ss_pred eeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHh
Q psy1089 298 LSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDS 363 (404)
Q Consensus 298 is~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~ 363 (404)
++|+++++|+|++.+++||++|+||++..|.|++||++|.|+... ++.|++.. |...++..+
T Consensus 90 v~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~--~~~~~~~~--~~~~~~~i~ 151 (163)
T 2hjv_A 90 VATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGK--AISFVTAF--EKRFLADIE 151 (163)
T ss_dssp EECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEE--EEEEECGG--GHHHHHHHH
T ss_pred EECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCce--EEEEecHH--HHHHHHHHH
Confidence 788999999999999999999999999999999999999998754 45566544 444444433
No 11
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.81 E-value=9.6e-20 Score=163.59 Aligned_cols=145 Identities=21% Similarity=0.276 Sum_probs=107.3
Q ss_pred ccccccccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCce
Q psy1089 215 VCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWG 294 (404)
Q Consensus 215 ~~~~~~~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~ 294 (404)
.+....+..+.|+..|.+++.... .+.++||||++...++.+...|...|+.+..++|+++..+|..+++.|+++. +.
T Consensus 21 ~q~~~~v~~~~K~~~L~~ll~~~~-~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~-~~ 98 (185)
T 2jgn_A 21 TQKVVWVEESDKRSFLLDLLNATG-KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK-SP 98 (185)
T ss_dssp EEEEEECCGGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTS-SS
T ss_pred eEEEEEeCcHHHHHHHHHHHHhcC-CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCC-Ce
Confidence 333444567889999999998642 5789999999999999999999999999999999999999999999999885 44
Q ss_pred EEEeeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCC--HHHHHHHHHhc
Q psy1089 295 VFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHST--YQVHLFTIDSS 364 (404)
Q Consensus 295 vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~T--iEe~i~~~~~~ 364 (404)
+|++|+++++|+|++.+++||++|+||++..|.|++||++|.|+.. .++.|++... .-..+.+.+..
T Consensus 99 -vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g--~~~~~~~~~~~~~~~~l~~~l~~ 167 (185)
T 2jgn_A 99 -ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG--LATSFFNERNINITKDLLDLLVE 167 (185)
T ss_dssp -EEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCE--EEEEEECGGGGGGHHHHHHHHHH
T ss_pred -EEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCc--EEEEEEchhhHHHHHHHHHHHHh
Confidence 5677799999999999999999999999999999999999999764 4566666543 33455555443
No 12
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.80 E-value=1.4e-19 Score=163.36 Aligned_cols=130 Identities=23% Similarity=0.318 Sum_probs=110.5
Q ss_pred cccccccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceE
Q psy1089 216 CDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGV 295 (404)
Q Consensus 216 ~~~~~~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v 295 (404)
+....+..+.|+..|.+++.. .+.++||||++...++.+...|...|+.+..++|+++..+|..+++.|+++. +.
T Consensus 32 q~~~~~~~~~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~-~~- 106 (191)
T 2p6n_A 32 QEVEYVKEEAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGK-KD- 106 (191)
T ss_dssp EEEEECCGGGHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTS-CS-
T ss_pred EEEEEcChHHHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC-CE-
Confidence 333445567899988888763 4679999999999999999999999999999999999999999999999885 44
Q ss_pred EEeeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCC
Q psy1089 296 FLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHS 352 (404)
Q Consensus 296 lLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~ 352 (404)
+|++|+++++|+|++.+++||+||+||++..|.|++||++|.|+.. .++.|++..
T Consensus 107 vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g--~~i~l~~~~ 161 (191)
T 2p6n_A 107 VLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTG--IATTFINKA 161 (191)
T ss_dssp EEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CC--EEEEEECTT
T ss_pred EEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCc--EEEEEEcCc
Confidence 5677899999999999999999999999999999999999999976 445566654
No 13
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.79 E-value=9.6e-19 Score=153.78 Aligned_cols=128 Identities=16% Similarity=0.258 Sum_probs=109.6
Q ss_pred cCCc-HHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeec
Q psy1089 222 SSSG-KMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLST 300 (404)
Q Consensus 222 ~~S~-Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~ 300 (404)
..+. |+..|.+++... .+.++||||++...++.+...|...|+.+..+||+++..+|..+++.|+++. .. +|++|
T Consensus 12 ~~~~~K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~-vlv~T 87 (165)
T 1fuk_A 12 EEEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS-SR-ILIST 87 (165)
T ss_dssp ESGGGHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS-CS-EEEEE
T ss_pred CcchhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCC-CE-EEEEc
Confidence 3445 999999999865 5689999999999999999999999999999999999999999999999885 44 56778
Q ss_pred cccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHH
Q psy1089 301 RAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355 (404)
Q Consensus 301 ~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiE 355 (404)
+++++|+|++.+++||++|+||++..+.|++||++|.|+.. .++.|++.+..+
T Consensus 88 ~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g--~~~~~~~~~~~~ 140 (165)
T 1fuk_A 88 DLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKG--VAINFVTNEDVG 140 (165)
T ss_dssp GGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----C--EEEEEEETTTHH
T ss_pred ChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCc--eEEEEEcchHHH
Confidence 99999999999999999999999999999999999999765 456777777544
No 14
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.75 E-value=5.4e-18 Score=150.41 Aligned_cols=124 Identities=14% Similarity=0.256 Sum_probs=106.2
Q ss_pred cHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccc
Q psy1089 225 GKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGG 304 (404)
Q Consensus 225 ~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g 304 (404)
.|+..|.+++... .+.++||||++...++.+...|...|+.+..+||+++..+|..+++.|+++. +. +|++|++++
T Consensus 20 ~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~-~~-vLvaT~~~~ 95 (175)
T 2rb4_A 20 DKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGK-EK-VLITTNVCA 95 (175)
T ss_dssp HHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTS-CS-EEEECCSCC
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC-Ce-EEEEecchh
Confidence 4999998888754 5679999999999999999999999999999999999999999999999985 44 577889999
Q ss_pred cCCCCCCCCEEEEecCC------CCchhHHHHHHhhhccCCCCcEEEEEEEeCCCH
Q psy1089 305 QGLNLTAADTCILYDSD------WNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTY 354 (404)
Q Consensus 305 ~GlnL~~a~~VI~~d~~------wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~Ti 354 (404)
+|+|++.+++||+||+| +++..|.|++||++|.|+. -.++.|++.+..
T Consensus 96 ~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~--g~~~~~~~~~~~ 149 (175)
T 2rb4_A 96 RGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKK--GLAFNMIEVDEL 149 (175)
T ss_dssp TTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CC--EEEEEEECGGGH
T ss_pred cCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCC--ceEEEEEccchH
Confidence 99999999999999999 6678999999999999955 566778877653
No 15
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.75 E-value=1.4e-17 Score=152.69 Aligned_cols=126 Identities=19% Similarity=0.256 Sum_probs=111.3
Q ss_pred ccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeec
Q psy1089 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLST 300 (404)
Q Consensus 221 ~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~ 300 (404)
...+.|+..|.+++.. ..+.++||||+.....+.+...|...|+.+..+||+++..+|..+++.|+++. .. +|++|
T Consensus 13 ~~~~~k~~~l~~ll~~--~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~-~~-vlvaT 88 (212)
T 3eaq_A 13 APVRGRLEVLSDLLYV--ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGE-VR-VLVAT 88 (212)
T ss_dssp CCTTSHHHHHHHHHHH--HCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSS-CC-EEEEC
T ss_pred CCHHHHHHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCC-Ce-EEEec
Confidence 3457899999999984 35789999999999999999999999999999999999999999999999985 44 57788
Q ss_pred cccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCC
Q psy1089 301 RAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHS 352 (404)
Q Consensus 301 ~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~ 352 (404)
+++++|+|++++++||++|+||++..|.|++||++|.|+.. .+|.|++..
T Consensus 89 ~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g--~~~~l~~~~ 138 (212)
T 3eaq_A 89 DVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPR 138 (212)
T ss_dssp TTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--B--EEEEEECGG
T ss_pred ChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCC--eEEEEEchh
Confidence 99999999999999999999999999999999999999764 566666654
No 16
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.58 E-value=2.4e-19 Score=158.48 Aligned_cols=131 Identities=17% Similarity=0.258 Sum_probs=112.3
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecccc
Q psy1089 224 SGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAG 303 (404)
Q Consensus 224 S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~ 303 (404)
+.|+..|.+++.. ..+.++||||++...++.+...|...|+.+..+||+++..+|..+++.|+++. +. +|++|+++
T Consensus 15 ~~k~~~l~~ll~~--~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~-~~-vLvaT~~~ 90 (170)
T 2yjt_D 15 EHKTALLVHLLKQ--PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR-VN-VLVATDVA 90 (170)
Confidence 6788888888875 35679999999999999999999999999999999999999999999999885 33 67788999
Q ss_pred ccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHH
Q psy1089 304 GQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTID 362 (404)
Q Consensus 304 g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~ 362 (404)
++|+|++.+++||++|+||++..+.|++||++|.|+...+ +.++... |..++...
T Consensus 91 ~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~--~~~~~~~--~~~~~~~~ 145 (170)
T 2yjt_D 91 ARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTA--ISLVEAH--DHLLLGKV 145 (170)
Confidence 9999999999999999999999999999999999987655 4444443 33444443
No 17
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.72 E-value=5.6e-18 Score=175.14 Aligned_cols=135 Identities=14% Similarity=0.182 Sum_probs=77.5
Q ss_pred CCcHHHHHHHHHHHhh--hCCCeEEEEecchHHHHHHHHHHHhc------------CCceEeccCCcCHHHHHHHHHHHh
Q psy1089 223 SSGKMIVLNQLLHKLK--QTNHKTLVFSTMVKVLNFIEELCVLE------------NYNYYRLHGSIRNEERNDAVQQFN 288 (404)
Q Consensus 223 ~S~Kl~~L~~ll~~l~--~~~~KvlIFs~~~~~l~~L~~~L~~~------------gi~~~~i~G~~~~~~R~~~i~~F~ 288 (404)
.++|+..|.++|.... ..+.|+||||++...++.|...|... |..+..+||+++..+|.+++++|+
T Consensus 370 ~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 449 (556)
T 4a2p_A 370 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 449 (556)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC--------------------------
T ss_pred CChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhc
Confidence 4889999999998765 56899999999999999999999765 555666677899999999999999
Q ss_pred CCCCceEEEeeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHh
Q psy1089 289 GSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDS 363 (404)
Q Consensus 289 ~~~~~~vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~ 363 (404)
++..+. +|++|+++|+|||++.+++||+||+|||+..|.||+|| +| .+++.+|.|++++++||. +....
T Consensus 450 ~~g~~~-vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR---~~~g~~~~l~~~~~~~~~-~~~~~ 518 (556)
T 4a2p_A 450 TSKDNR-LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR---AAGSKCILVTSKTEVVEN-EKCNR 518 (556)
T ss_dssp ----CC-EEEEEC-----------CEEEEETCCSCHHHHHHC------------CCEEEEESCHHHHHH-HHHHH
T ss_pred ccCceE-EEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CC---CCCceEEEEEeCcchHHH-HHhhH
Confidence 932345 56888999999999999999999999999999999999 55 477899999999999988 44433
No 18
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.69 E-value=1.8e-16 Score=152.87 Aligned_cols=127 Identities=19% Similarity=0.251 Sum_probs=109.5
Q ss_pred ccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeec
Q psy1089 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLST 300 (404)
Q Consensus 221 ~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~ 300 (404)
...+.|+..|.+++... .+.++||||+.....+.+...|...|+.+..+||++++.+|..+++.|+++. .. +|++|
T Consensus 10 ~~~~~K~~~L~~ll~~~--~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~-~~-vLVaT 85 (300)
T 3i32_A 10 APVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGE-VR-VLVAT 85 (300)
T ss_dssp CCSSSHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTS-CC-EEEEC
T ss_pred CCHHHHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCC-ce-EEEEe
Confidence 44578999999999864 4789999999999999999999999999999999999999999999999985 34 67788
Q ss_pred cccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCC
Q psy1089 301 RAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHST 353 (404)
Q Consensus 301 ~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~T 353 (404)
+++++|+|++++++||++|+||++..|.|++||++|.|+.. .+|.|++...
T Consensus 86 ~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G--~~i~l~~~~e 136 (300)
T 3i32_A 86 DVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPRE 136 (300)
T ss_dssp STTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----C--EEEEEECSST
T ss_pred chhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCc--eEEEEeChHH
Confidence 99999999999999999999999999999999999999774 5667776654
No 19
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.68 E-value=2.7e-17 Score=169.66 Aligned_cols=130 Identities=16% Similarity=0.219 Sum_probs=92.8
Q ss_pred CCcHHHHHHHHHHHhhh--CCCeEEEEecchHHHHHHHHHHHhcC------------CceEeccCCcCHHHHHHHHHHHh
Q psy1089 223 SSGKMIVLNQLLHKLKQ--TNHKTLVFSTMVKVLNFIEELCVLEN------------YNYYRLHGSIRNEERNDAVQQFN 288 (404)
Q Consensus 223 ~S~Kl~~L~~ll~~l~~--~~~KvlIFs~~~~~l~~L~~~L~~~g------------i~~~~i~G~~~~~~R~~~i~~F~ 288 (404)
.++|+..|.++|..... .+.|+||||++...++.|...|...| ..+..+||+++..+|.+++++|+
T Consensus 369 ~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 448 (555)
T 3tbk_A 369 ENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFR 448 (555)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-----------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHh
Confidence 48899999999988753 45899999999999999999998764 34455566999999999999999
Q ss_pred CCCCceEEEeeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHH
Q psy1089 289 GSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVH 357 (404)
Q Consensus 289 ~~~~~~vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~ 357 (404)
++..+.| |++|+++|+|||++.+++||+||+||||..|.||+|| |+.+.+.+|.|++.++.++.
T Consensus 449 ~~g~~~v-LvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~~~l~~~~~~~~~ 512 (555)
T 3tbk_A 449 ASGDNNI-LIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR----GRARDSKCFLLTSSADVIEK 512 (555)
T ss_dssp ---CCSE-EEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC----CTTTSCEEEEEESCHHHHHH
T ss_pred cCCCeeE-EEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc----CcCCCceEEEEEcCCCHHHH
Confidence 9333554 6788999999999999999999999999999999999 55688999999999999876
No 20
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.67 E-value=5.8e-16 Score=152.95 Aligned_cols=136 Identities=21% Similarity=0.277 Sum_probs=115.8
Q ss_pred ccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeec
Q psy1089 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLST 300 (404)
Q Consensus 221 ~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~ 300 (404)
.....|...+.+++... .+.++||||++...++.+...|...|+.+..+||+++..+|..+++.|+++. .. +|++|
T Consensus 232 ~~~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~~-vlv~T 307 (391)
T 1xti_A 232 LKDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ-RR-ILVAT 307 (391)
T ss_dssp CCGGGHHHHHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTC-CS-EEEES
T ss_pred cCchhHHHHHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCC-Cc-EEEEC
Confidence 34567888888888764 6789999999999999999999999999999999999999999999999885 33 67788
Q ss_pred cccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHh
Q psy1089 301 RAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDS 363 (404)
Q Consensus 301 ~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~ 363 (404)
+++++|+|++++++||++++||++..+.|++||++|.|+... ++.+++.. -++.+++..+
T Consensus 308 ~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~--~~~~~~~~-~~~~~~~~~~ 367 (391)
T 1xti_A 308 NLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL--AITFVSDE-NDAKILNDVQ 367 (391)
T ss_dssp CCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCE--EEEEECSH-HHHHHHHHHH
T ss_pred ChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceE--EEEEEccc-chHHHHHHHH
Confidence 999999999999999999999999999999999999997654 44445543 2445555544
No 21
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.67 E-value=3.9e-17 Score=177.29 Aligned_cols=135 Identities=14% Similarity=0.178 Sum_probs=82.2
Q ss_pred CCcHHHHHHHHHHHhh--hCCCeEEEEecchHHHHHHHHHHHhc------------CCceEeccCCcCHHHHHHHHHHHh
Q psy1089 223 SSGKMIVLNQLLHKLK--QTNHKTLVFSTMVKVLNFIEELCVLE------------NYNYYRLHGSIRNEERNDAVQQFN 288 (404)
Q Consensus 223 ~S~Kl~~L~~ll~~l~--~~~~KvlIFs~~~~~l~~L~~~L~~~------------gi~~~~i~G~~~~~~R~~~i~~F~ 288 (404)
.++|+..|.++|.... ..+.|+||||++..+++.|...|... |..+..+||+++..+|..++++|+
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~ 690 (797)
T 4a2q_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (797)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC-------------------------
T ss_pred CChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhh
Confidence 5899999999998754 56799999999999999999999763 566677788899999999999999
Q ss_pred CCCCceEEEeeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHh
Q psy1089 289 GSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDS 363 (404)
Q Consensus 289 ~~~~~~vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~ 363 (404)
++..+. +|++|+++|+|||++.+++||+||+||||..|.||+|| +|. +++.+|.|++.++++|. +....
T Consensus 691 ~~g~~~-vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~---~~g~~i~l~~~~~~ee~-~~~~~ 759 (797)
T 4a2q_A 691 TSKDNR-LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA---AGSKCILVTSKTEVVEN-EKCNR 759 (797)
T ss_dssp ---CCS-EEEEECC-------CCCSEEEEESCCSCHHHHHTC-----------CCCEEEEECCHHHHHH-HHHHH
T ss_pred ccCCce-EEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC---CCceEEEEEeCCcHHHH-HHHHH
Confidence 932344 66888999999999999999999999999999999999 554 77899999999999988 44433
No 22
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.67 E-value=1e-16 Score=176.60 Aligned_cols=131 Identities=14% Similarity=0.167 Sum_probs=82.6
Q ss_pred CCcHHHHHHHHHHHhh--hCCCeEEEEecchHHHHHHHHHHHhc------------CCceEeccCCcCHHHHHHHHHHHh
Q psy1089 223 SSGKMIVLNQLLHKLK--QTNHKTLVFSTMVKVLNFIEELCVLE------------NYNYYRLHGSIRNEERNDAVQQFN 288 (404)
Q Consensus 223 ~S~Kl~~L~~ll~~l~--~~~~KvlIFs~~~~~l~~L~~~L~~~------------gi~~~~i~G~~~~~~R~~~i~~F~ 288 (404)
.++|+..|.++|.... ..+.|+||||++..+++.|...|... |..+..+||+++..+|.+++++|+
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr 690 (936)
T 4a2w_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (936)
T ss_dssp CCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhh
Confidence 3889999999999864 46799999999999999999999876 556666788899999999999999
Q ss_pred C-CCCceEEEeeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHH
Q psy1089 289 G-STEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLF 359 (404)
Q Consensus 289 ~-~~~~~vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~ 359 (404)
+ +. +. +|++|+++|+|||++.+++||+||+|||+..+.||+|| +| .+++.+|.|++.+|+|+..+
T Consensus 691 ~~g~-~~-VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR---~~~g~vi~Li~~~t~ee~~~ 756 (936)
T 4a2w_A 691 TSKD-NR-LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR---AAGSKCILVTSKTEVVENEK 756 (936)
T ss_dssp ---C-CS-EEEEECC------CCCCSEEEEESCCSCSHHHHCC-----------CCCEEEEESCHHHHHHHH
T ss_pred ccCC-ee-EEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CC---CCCCEEEEEEeCCCHHHHHH
Confidence 9 53 44 67889999999999999999999999999999999999 54 47788999999999998755
No 23
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.63 E-value=1.3e-15 Score=151.82 Aligned_cols=124 Identities=22% Similarity=0.343 Sum_probs=110.3
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecccc
Q psy1089 224 SGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAG 303 (404)
Q Consensus 224 S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~ 303 (404)
..|+..+.+++... .+.++||||+....++.+...|...|+.+..+||+++..+|..+++.|+++. .. +|++|+++
T Consensus 261 ~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~-~~-vlv~T~~~ 336 (410)
T 2j0s_A 261 EWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGA-SR-VLISTDVW 336 (410)
T ss_dssp THHHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTS-SC-EEEECGGG
T ss_pred HhHHHHHHHHHHhc--CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCC-CC-EEEECChh
Confidence 34888888888765 4569999999999999999999999999999999999999999999999985 34 67788999
Q ss_pred ccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCC
Q psy1089 304 GQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHST 353 (404)
Q Consensus 304 g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~T 353 (404)
++|+|++.+++||++|+||++..|.|++||++|.|+.. .++.|++...
T Consensus 337 ~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~~ 384 (410)
T 2j0s_A 337 ARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKG--VAINFVKNDD 384 (410)
T ss_dssp SSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCE--EEEEEEEGGG
T ss_pred hCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCce--EEEEEecHHH
Confidence 99999999999999999999999999999999999764 5666676654
No 24
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.62 E-value=4.7e-15 Score=147.13 Aligned_cols=128 Identities=19% Similarity=0.332 Sum_probs=113.0
Q ss_pred cccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEee
Q psy1089 220 IVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLS 299 (404)
Q Consensus 220 ~~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis 299 (404)
....+.|+..+..++... .+.++||||+....++.+...|...|+.+..+||+++..+|..+++.|+++. .. +|++
T Consensus 239 ~~~~~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~-vLv~ 314 (400)
T 1s2m_A 239 FVEERQKLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGK-VR-TLVC 314 (400)
T ss_dssp ECCGGGHHHHHHHHHHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTS-SS-EEEE
T ss_pred EechhhHHHHHHHHHhhc--CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCC-Cc-EEEE
Confidence 345678888888888754 5679999999999999999999999999999999999999999999999885 34 6778
Q ss_pred ccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCC
Q psy1089 300 TRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHST 353 (404)
Q Consensus 300 ~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~T 353 (404)
|+++++|+|++.+++||++|+||++..+.|++||++|.|+.. .++.|+..+.
T Consensus 315 T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~l~~~~~ 366 (400)
T 1s2m_A 315 SDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLG--LAINLINWND 366 (400)
T ss_dssp SSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCE--EEEEEECGGG
T ss_pred cCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCc--eEEEEeccch
Confidence 899999999999999999999999999999999999999764 5666676663
No 25
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.62 E-value=3.9e-15 Score=150.56 Aligned_cols=136 Identities=18% Similarity=0.283 Sum_probs=113.9
Q ss_pred ccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeec
Q psy1089 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLST 300 (404)
Q Consensus 221 ~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~ 300 (404)
+....|...|.+++... +.++||||+....++.+...|...|+++..+||+++..+|..+++.|+++. .. +|++|
T Consensus 283 ~~~~~k~~~l~~~l~~~---~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~-~~-vLvaT 357 (434)
T 2db3_A 283 VNKYAKRSKLIEILSEQ---ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGS-MK-VLIAT 357 (434)
T ss_dssp CCGGGHHHHHHHHHHHC---CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSS-CS-EEEEC
T ss_pred eCcHHHHHHHHHHHHhC---CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCC-Cc-EEEEc
Confidence 44567888888877653 445999999999999999999999999999999999999999999999985 33 67888
Q ss_pred cccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCC---CHHHHHHHHHh
Q psy1089 301 RAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHS---TYQVHLFTIDS 363 (404)
Q Consensus 301 ~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~---TiEe~i~~~~~ 363 (404)
+++++|+|++++++||+||+|+++..|.||+||++|.|+.. .++.|++.+ .+-..+.+.++
T Consensus 358 ~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G--~a~~~~~~~~~~~~~~~l~~~l~ 421 (434)
T 2db3_A 358 SVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNG--RATSFFDPEKDRAIAADLVKILE 421 (434)
T ss_dssp GGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCE--EEEEEECTTTCGGGHHHHHHHHH
T ss_pred hhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCC--EEEEEEeccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999865 455556633 23344444443
No 26
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.61 E-value=3.1e-15 Score=149.08 Aligned_cols=140 Identities=21% Similarity=0.295 Sum_probs=115.7
Q ss_pred cccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEee
Q psy1089 220 IVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLS 299 (404)
Q Consensus 220 ~~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis 299 (404)
......|...+.+++... ..+.++||||+....++.+...|...|+.+..+||+++.++|..+++.|+++. .. +|++
T Consensus 256 ~~~~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~-~~-vlva 332 (417)
T 2i4i_A 256 WVEESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK-SP-ILVA 332 (417)
T ss_dssp ECCGGGHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTS-SC-EEEE
T ss_pred EeccHhHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCC-CC-EEEE
Confidence 344577888888888754 35789999999999999999999999999999999999999999999999885 33 6778
Q ss_pred ccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCH--HHHHHHHHhc
Q psy1089 300 TRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTY--QVHLFTIDSS 364 (404)
Q Consensus 300 ~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~Ti--Ee~i~~~~~~ 364 (404)
|+++++|+|++.+++||++|+||++..|.|++||++|.|+. -.+|.|+..... -..+.+....
T Consensus 333 T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~--g~~~~~~~~~~~~~~~~l~~~~~~ 397 (417)
T 2i4i_A 333 TAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNL--GLATSFFNERNINITKDLLDLLVE 397 (417)
T ss_dssp CHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CC--EEEEEEECGGGGGGHHHHHHHHHH
T ss_pred CChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCC--ceEEEEEccccHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999976 455666665432 3455555443
No 27
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.61 E-value=2.2e-15 Score=146.92 Aligned_cols=127 Identities=17% Similarity=0.312 Sum_probs=110.3
Q ss_pred ccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeec
Q psy1089 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLST 300 (404)
Q Consensus 221 ~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~ 300 (404)
.....|+..+.+++. ..+.++||||++...++.+...|...|+.+..+||+++..+|..+++.|+++. .. +|++|
T Consensus 221 ~~~~~~~~~l~~~l~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~~-vlv~T 295 (367)
T 1hv8_A 221 VNENERFEALCRLLK---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKK-IR-ILIAT 295 (367)
T ss_dssp CCGGGHHHHHHHHHC---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTS-SS-EEEEC
T ss_pred eChHHHHHHHHHHHh---cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCC-Ce-EEEEC
Confidence 345667777776664 56789999999999999999999999999999999999999999999999885 34 66788
Q ss_pred cccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCH
Q psy1089 301 RAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTY 354 (404)
Q Consensus 301 ~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~Ti 354 (404)
+++++|+|++.+++||++++||++..+.|++||++|.|+... ++.++.....
T Consensus 296 ~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~--~~~~~~~~~~ 347 (367)
T 1hv8_A 296 DVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGK--AISIINRREY 347 (367)
T ss_dssp TTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCE--EEEEECTTSH
T ss_pred ChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccE--EEEEEcHHHH
Confidence 999999999999999999999999999999999999998764 4555666543
No 28
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.59 E-value=3e-15 Score=148.89 Aligned_cols=124 Identities=19% Similarity=0.321 Sum_probs=98.1
Q ss_pred CCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccc
Q psy1089 223 SSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRA 302 (404)
Q Consensus 223 ~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a 302 (404)
...|+..+.+++... .+.++||||+....++.+...|...|+.+..+||+++..+|..+++.|+++. . .+|++|++
T Consensus 264 ~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~-~-~vlv~T~~ 339 (414)
T 3eiq_A 264 EEWKLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGS-S-RVLITTDL 339 (414)
T ss_dssp STTHHHHHHHHHHSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC-----CEEECSS
T ss_pred HHhHHHHHHHHHHhC--CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCC-C-cEEEECCc
Confidence 345888888888744 5679999999999999999999999999999999999999999999999885 3 36888999
Q ss_pred cccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCC
Q psy1089 303 GGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHS 352 (404)
Q Consensus 303 ~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~ 352 (404)
+++|+|++.+++||++++||++..|.|++||++|.|+.. .+|.|++++
T Consensus 340 ~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~ 387 (414)
T 3eiq_A 340 LARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKG--VAINMVTEE 387 (414)
T ss_dssp CC--CCGGGCSCEEESSCCSSTHHHHHHSCCC---------CEEEEECST
T ss_pred cccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCc--eEEEEEcHH
Confidence 999999999999999999999999999999999999765 456667766
No 29
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.59 E-value=7e-15 Score=144.86 Aligned_cols=133 Identities=20% Similarity=0.305 Sum_probs=110.2
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecccc
Q psy1089 224 SGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAG 303 (404)
Q Consensus 224 S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~ 303 (404)
..|...+..++... .+.++||||+....++.+...|+..|+.+..+||+++..+|..+++.|+++. .. +|++|+++
T Consensus 228 ~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~-vlv~T~~~ 303 (395)
T 3pey_A 228 ADKFDVLTELYGLM--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGR-SK-VLITTNVL 303 (395)
T ss_dssp HHHHHHHHHHHTTT--TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTS-CC-EEEECGGG
T ss_pred HHHHHHHHHHHHhc--cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCC-CC-EEEECChh
Confidence 45666666666533 5689999999999999999999999999999999999999999999999985 34 67888999
Q ss_pred ccCCCCCCCCEEEEecCCC------CchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHh
Q psy1089 304 GQGLNLTAADTCILYDSDW------NPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDS 363 (404)
Q Consensus 304 g~GlnL~~a~~VI~~d~~w------np~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~ 363 (404)
++|+|++.+++||++|+|| ++..+.|++||++|.|+.. .++.++..+ -+..+++..+
T Consensus 304 ~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~-~~~~~~~~i~ 366 (395)
T 3pey_A 304 ARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKG--VAISFVHDK-NSFNILSAIQ 366 (395)
T ss_dssp SSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCE--EEEEEECSH-HHHHHHHHHH
T ss_pred hcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCc--eEEEEEech-HHHHHHHHHH
Confidence 9999999999999999999 9999999999999999764 445555443 2334444433
No 30
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.57 E-value=2.4e-15 Score=160.49 Aligned_cols=127 Identities=13% Similarity=0.208 Sum_probs=102.4
Q ss_pred CCcHHHHHHHHHHHhhh--C-CCeEEEEecchHHHHHHHHHHHhc------CCceEeccCC--------cCHHHHHHHHH
Q psy1089 223 SSGKMIVLNQLLHKLKQ--T-NHKTLVFSTMVKVLNFIEELCVLE------NYNYYRLHGS--------IRNEERNDAVQ 285 (404)
Q Consensus 223 ~S~Kl~~L~~ll~~l~~--~-~~KvlIFs~~~~~l~~L~~~L~~~------gi~~~~i~G~--------~~~~~R~~~i~ 285 (404)
.++|+..|.++|..... . +.++||||++...++.|...|... |+++..+||+ ++..+|.++++
T Consensus 379 ~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~ 458 (699)
T 4gl2_A 379 ENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVIS 458 (699)
T ss_dssp ---CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHH
Confidence 46788888888876543 2 789999999999999999999987 9999999999 99999999999
Q ss_pred HHhCCCCceEEEeeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHH
Q psy1089 286 QFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355 (404)
Q Consensus 286 ~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiE 355 (404)
+|+++. .. +|++|.++|+|||++.+++||+||+|||+..|.|++||++|.| ..++.+...++.+
T Consensus 459 ~F~~g~-~~-VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g----~~~~l~~~~~~~~ 522 (699)
T 4gl2_A 459 KFRTGK-IN-LLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE----STYVLVAHSGSGV 522 (699)
T ss_dssp HHCC----C-CSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS----CEEEEEEESSSCS
T ss_pred HHhcCC-Cc-EEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC----ceEEEEEeCCchH
Confidence 999985 34 5778999999999999999999999999999999999976655 4555556666633
No 31
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.57 E-value=2e-14 Score=142.67 Aligned_cols=133 Identities=16% Similarity=0.245 Sum_probs=110.9
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecccc
Q psy1089 224 SGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAG 303 (404)
Q Consensus 224 S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~ 303 (404)
..|+..+.+++... .+.++||||+....++.+...|...|+.+..+||+++..+|..+++.|+++. .. +|++|+++
T Consensus 251 ~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~-vlv~T~~~ 326 (412)
T 3fht_A 251 DEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGK-EK-VLVTTNVC 326 (412)
T ss_dssp HHHHHHHHHHHHHH--SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTS-CS-EEEECGGG
T ss_pred HHHHHHHHHHHhhc--CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCC-Cc-EEEEcCcc
Confidence 45777777777643 5679999999999999999999999999999999999999999999999985 33 67888999
Q ss_pred ccCCCCCCCCEEEEecCCCCc------hhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHh
Q psy1089 304 GQGLNLTAADTCILYDSDWNP------QVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDS 363 (404)
Q Consensus 304 g~GlnL~~a~~VI~~d~~wnp------~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~ 363 (404)
++|+|++.+++||++|+||++ ..|.|++||++|.|+.. .++.++... -|..+++..+
T Consensus 327 ~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~-~~~~~~~~i~ 389 (412)
T 3fht_A 327 ARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRG--LAVNMVDSK-HSMNILNRIQ 389 (412)
T ss_dssp TSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCE--EEEEEECSH-HHHHHHHHHH
T ss_pred ccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCc--eEEEEEcCh-hhHHHHHHHH
Confidence 999999999999999999876 68999999999999654 455555443 3345555544
No 32
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.57 E-value=5.2e-15 Score=152.18 Aligned_cols=136 Identities=17% Similarity=0.135 Sum_probs=115.0
Q ss_pred CCcHHHHHHHHHHHhhhC-CCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecc
Q psy1089 223 SSGKMIVLNQLLHKLKQT-NHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTR 301 (404)
Q Consensus 223 ~S~Kl~~L~~ll~~l~~~-~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~ 301 (404)
...|...+.+++...... +.++|||+. ...++.+.+.|...+.++..+||+++..+|.++++.|+++. ..|++++..
T Consensus 329 ~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~-~~vLv~T~~ 406 (510)
T 2oca_A 329 LSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGK-GIIIVASYG 406 (510)
T ss_dssp CHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCC-SCEEEEEHH
T ss_pred cHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCC-CCEEEEEcC
Confidence 345667777777766554 556677777 88888899999998889999999999999999999999885 555555449
Q ss_pred ccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCC-cEEEEEEEeCCCHHHHHHH
Q psy1089 302 AGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTK-PVCIYRLVSHSTYQVHLFT 360 (404)
Q Consensus 302 a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~-~V~Vy~Li~~~TiEe~i~~ 360 (404)
++++|+|++.+++||+++++|++..+.|++||+||.|+.+ .|.||.++...++.+.++.
T Consensus 407 ~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~~~~~~~~~~~~ 466 (510)
T 2oca_A 407 VFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLIDDAGVKPKSAN 466 (510)
T ss_dssp HHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEEEEECCBCCSSSS
T ss_pred hhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEeecchhhhhhhhh
Confidence 9999999999999999999999999999999999999987 7999999998776555443
No 33
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.56 E-value=3e-15 Score=159.60 Aligned_cols=128 Identities=16% Similarity=0.198 Sum_probs=82.5
Q ss_pred CCcHHHHHHHHHHHhh--hCCCeEEEEecchHHHHHHHHHHHhcC----CceEeccC--------CcCHHHHHHHHHHHh
Q psy1089 223 SSGKMIVLNQLLHKLK--QTNHKTLVFSTMVKVLNFIEELCVLEN----YNYYRLHG--------SIRNEERNDAVQQFN 288 (404)
Q Consensus 223 ~S~Kl~~L~~ll~~l~--~~~~KvlIFs~~~~~l~~L~~~L~~~g----i~~~~i~G--------~~~~~~R~~~i~~F~ 288 (404)
.++|+..|.+++.... ..+.++||||++...++.|...|...| +++..++| +++.++|.+++++|+
T Consensus 378 ~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~ 457 (696)
T 2ykg_A 378 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 457 (696)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC--------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHH
Confidence 5789999999998764 357899999999999999999999888 89999954 999999999999999
Q ss_pred C-CCCceEEEeeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHH
Q psy1089 289 G-STEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQV 356 (404)
Q Consensus 289 ~-~~~~~vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe 356 (404)
+ +. +. +|++|.++++|||++++++||+||+|||+..|.||+|| ||. ++..+|.|++.+++++
T Consensus 458 ~~g~-~~-vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~---~~g~~~~l~~~~~~~~ 520 (696)
T 2ykg_A 458 ASGD-HN-ILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA---RGSKCFLLTSNAGVIE 520 (696)
T ss_dssp ---C-CS-CSEEEESSCCC---CCCSEEEEESCC--CCCC-------------CCCEEEEEESCHHHHH
T ss_pred hcCC-cc-EEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC---CCceEEEEecCCCHHH
Confidence 8 64 45 47888999999999999999999999999999999999 885 5678899999888744
No 34
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.56 E-value=2.6e-15 Score=144.91 Aligned_cols=116 Identities=17% Similarity=0.313 Sum_probs=99.4
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEe
Q psy1089 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILY 318 (404)
Q Consensus 239 ~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~ 318 (404)
..+.++||||+....++.+...|. .+..+||+++..+|.++++.|+++. .. +|++|+++++|+|++.+++||++
T Consensus 218 ~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~-~~-vlv~T~~~~~Gid~~~~~~Vi~~ 291 (337)
T 2z0m_A 218 NKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGE-YD-MLITTDVASRGLDIPLVEKVINF 291 (337)
T ss_dssp CCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTS-CS-EEEECHHHHTTCCCCCBSEEEES
T ss_pred CCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCC-Cc-EEEEcCccccCCCccCCCEEEEe
Confidence 467899999999999999988886 5788999999999999999999985 34 67788999999999999999999
Q ss_pred cCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHH
Q psy1089 319 DSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTI 361 (404)
Q Consensus 319 d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~ 361 (404)
++||++..+.|++||++|.|+...+.+|.. ....+++.|.+.
T Consensus 292 ~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~ 333 (337)
T 2z0m_A 292 DAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKV 333 (337)
T ss_dssp SCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC--
T ss_pred cCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHH
Confidence 999999999999999999998877777665 444455555444
No 35
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.52 E-value=7.2e-14 Score=144.65 Aligned_cols=121 Identities=14% Similarity=0.167 Sum_probs=107.3
Q ss_pred ccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeec
Q psy1089 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLST 300 (404)
Q Consensus 221 ~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~ 300 (404)
.....|+..+.+++... .+.++||||+.....+.+...|...|+.+..+||+++.++|..+++.|.++. .. +|++|
T Consensus 218 ~~~~~~~~~l~~~l~~~--~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~-~~-vlVaT 293 (523)
T 1oyw_A 218 MEKFKPLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDD-LQ-IVVAT 293 (523)
T ss_dssp EECSSHHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS-CS-EEEEC
T ss_pred EeCCCHHHHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCC-Ce-EEEEe
Confidence 34456777777777643 6789999999999999999999999999999999999999999999999985 44 56788
Q ss_pred cccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEE
Q psy1089 301 RAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCI 345 (404)
Q Consensus 301 ~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~V 345 (404)
.++|+|+|++.+++||++++|+++..|.|++||++|.|+...+.+
T Consensus 294 ~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l 338 (523)
T 1oyw_A 294 VAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAML 338 (523)
T ss_dssp TTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEE
T ss_pred chhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEE
Confidence 999999999999999999999999999999999999998765444
No 36
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.49 E-value=3.5e-15 Score=147.32 Aligned_cols=122 Identities=16% Similarity=0.258 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccc
Q psy1089 225 GKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGG 304 (404)
Q Consensus 225 ~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g 304 (404)
.|...+.+++... .+.++||||+....++.+...|...|+.+..+||+++..+|..+++.|+++. . .+|++|++++
T Consensus 245 ~~~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~-~vlv~T~~~~ 320 (394)
T 1fuu_A 245 YKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS-S-RILISTDLLA 320 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHhcC--CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCC-C-cEEEECChhh
Confidence 3666677766643 4679999999999999999999999999999999999999999999999874 3 3677889999
Q ss_pred cCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCC
Q psy1089 305 QGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHS 352 (404)
Q Consensus 305 ~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~ 352 (404)
+|+|++.+++||++++||++..+.|++||++|.|+... ++.+++.+
T Consensus 321 ~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~--~~~~~~~~ 366 (394)
T 1fuu_A 321 RGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGV--AINFVTNE 366 (394)
T ss_dssp ------------------------------------------------
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCce--EEEEEchh
Confidence 99999999999999999999999999999999997764 44455554
No 37
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.49 E-value=2.1e-13 Score=142.72 Aligned_cols=129 Identities=18% Similarity=0.326 Sum_probs=105.9
Q ss_pred HHHHHHHHHhh--hCCCeEEEEecchHHHHHHHHHHHhc---CCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccc
Q psy1089 228 IVLNQLLHKLK--QTNHKTLVFSTMVKVLNFIEELCVLE---NYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRA 302 (404)
Q Consensus 228 ~~L~~ll~~l~--~~~~KvlIFs~~~~~l~~L~~~L~~~---gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a 302 (404)
..+..+...+. ..+.++||||.....++.+...|... |+.+..+||+++..+|..+++.|+++. .. +|++|++
T Consensus 273 ~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~-~~-vLVaT~~ 350 (579)
T 3sqw_A 273 AAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDE-SG-ILVCTDV 350 (579)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCS-SE-EEEECGG
T ss_pred HHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCC-Ce-EEEEcch
Confidence 33334444333 45789999999999999999999876 999999999999999999999999985 33 6788999
Q ss_pred cccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHH
Q psy1089 303 GGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTID 362 (404)
Q Consensus 303 ~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~ 362 (404)
+++|+|++.+++||++++|+++..|.|++||++|.|+.. .++.+++.. |...++.+
T Consensus 351 ~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g--~~i~~~~~~--e~~~~~~l 406 (579)
T 3sqw_A 351 GARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEG--SSVLFICKD--ELPFVREL 406 (579)
T ss_dssp GTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCE--EEEEEEEGG--GHHHHHHH
T ss_pred hhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCc--eEEEEEccc--HHHHHHHH
Confidence 999999999999999999999999999999999999754 445555554 44444444
No 38
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.48 E-value=2.8e-13 Score=140.85 Aligned_cols=119 Identities=18% Similarity=0.320 Sum_probs=102.1
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhc---CCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEE
Q psy1089 239 QTNHKTLVFSTMVKVLNFIEELCVLE---NYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTC 315 (404)
Q Consensus 239 ~~~~KvlIFs~~~~~l~~L~~~L~~~---gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~V 315 (404)
..+.++||||+....++.+...|... |+.+..+||+++..+|..+++.|+++. +. +|++|+++++|+|++++++|
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~-~~-vLvaT~~~~~GiDip~v~~V 414 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDE-SG-ILVCTDVGARGMDFPNVHEV 414 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCS-SE-EEEECGGGTSSCCCTTCCEE
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCC-CC-EEEEcchhhcCCCcccCCEE
Confidence 45789999999999999999999876 999999999999999999999999984 33 67888999999999999999
Q ss_pred EEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHh
Q psy1089 316 ILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDS 363 (404)
Q Consensus 316 I~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~ 363 (404)
|++|+|+++..|.|++||++|.|+.. .++.+++.+ |...++.++
T Consensus 415 I~~~~p~s~~~y~Qr~GRagR~g~~g--~~i~~~~~~--e~~~~~~l~ 458 (563)
T 3i5x_A 415 LQIGVPSELANYIHRIGRTARSGKEG--SSVLFICKD--ELPFVRELE 458 (563)
T ss_dssp EEESCCSSTTHHHHHHTTSSCTTCCE--EEEEEEEGG--GHHHHHHHH
T ss_pred EEECCCCchhhhhhhcCccccCCCCc--eEEEEEchh--HHHHHHHHH
Confidence 99999999999999999999999654 455555554 344444443
No 39
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.48 E-value=1.9e-13 Score=143.36 Aligned_cols=119 Identities=10% Similarity=0.105 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHhhh--CCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecccc
Q psy1089 226 KMIVLNQLLHKLKQ--TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAG 303 (404)
Q Consensus 226 Kl~~L~~ll~~l~~--~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~ 303 (404)
+...+..++..+.. .+.++||||......+.+...|...|+.+..+||+++..+|..+++.|.++. .. +|++|.++
T Consensus 250 ~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~-~~-VlVAT~a~ 327 (591)
T 2v1x_A 250 TEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANE-IQ-VVVATVAF 327 (591)
T ss_dssp HHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS-SS-EEEECTTS
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCC-Ce-EEEEechh
Confidence 33444444444432 5789999999999999999999999999999999999999999999999985 34 67788999
Q ss_pred ccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEE
Q psy1089 304 GQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIY 346 (404)
Q Consensus 304 g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy 346 (404)
|+|||++.+++||++++|+++..|.|++||++|.|+...+.++
T Consensus 328 ~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l 370 (591)
T 2v1x_A 328 GMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILY 370 (591)
T ss_dssp CTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEE
T ss_pred hcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEE
Confidence 9999999999999999999999999999999999987655444
No 40
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.45 E-value=2.3e-13 Score=142.66 Aligned_cols=109 Identities=14% Similarity=0.042 Sum_probs=96.9
Q ss_pred CCCeEEEEecchHHHHHHHHHHHhcCCc--------eEeccCCcCHHHHHHHHHHHhCCC-CceEEEeeccccccCCCCC
Q psy1089 240 TNHKTLVFSTMVKVLNFIEELCVLENYN--------YYRLHGSIRNEERNDAVQQFNGST-EWGVFLLSTRAGGQGLNLT 310 (404)
Q Consensus 240 ~~~KvlIFs~~~~~l~~L~~~L~~~gi~--------~~~i~G~~~~~~R~~~i~~F~~~~-~~~vlLis~~a~g~GlnL~ 310 (404)
.+.|+||||++...++.+...|...+.. +..++|.++. +|++++++|+++. ...++|++++++++|+|++
T Consensus 438 ~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip 516 (590)
T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAP 516 (590)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCT
T ss_pred CCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccch
Confidence 4689999999999999999999765543 6789998764 7999999999976 4678999999999999999
Q ss_pred CCCEEEEecCCCCchhHHHHHHhhhccCC---CCcEEEEEEE
Q psy1089 311 AADTCILYDSDWNPQVDIQAEARCHRIGQ---TKPVCIYRLV 349 (404)
Q Consensus 311 ~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq---~~~V~Vy~Li 349 (404)
.+++||+++++|++..+.|++||++|.|+ +..+.||.++
T Consensus 517 ~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 517 TCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp TEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEECS
T ss_pred heeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEecC
Confidence 99999999999999999999999999995 5668888887
No 41
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.43 E-value=6.8e-13 Score=132.62 Aligned_cols=116 Identities=17% Similarity=0.101 Sum_probs=100.9
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceE-eccCCcCHHHHHHHHHHHhCCCCceEEEee---
Q psy1089 224 SGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYY-RLHGSIRNEERNDAVQQFNGSTEWGVFLLS--- 299 (404)
Q Consensus 224 S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~-~i~G~~~~~~R~~~i~~F~~~~~~~vlLis--- 299 (404)
..|...+.+++.. .+.++||||+....++.+...|...|+++. .+||. +|. ++.|+++. +.+++.+
T Consensus 238 ~~~~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~-~~vLvat~s~ 307 (414)
T 3oiy_A 238 SRSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGK-INILIGVQAY 307 (414)
T ss_dssp SCCHHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTS-CSEEEEECCT
T ss_pred cCHHHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCC-CeEEEEecCc
Confidence 4678888888876 358999999999999999999999999998 99994 444 99999985 6666654
Q ss_pred ccccccCCCCCC-CCEEEEecCC--CCchhHHHHHHhhhccCCC--CcEEEEEEE
Q psy1089 300 TRAGGQGLNLTA-ADTCILYDSD--WNPQVDIQAEARCHRIGQT--KPVCIYRLV 349 (404)
Q Consensus 300 ~~a~g~GlnL~~-a~~VI~~d~~--wnp~~~~Qa~gR~~R~Gq~--~~V~Vy~Li 349 (404)
|+++++|+|+++ +++||++|+| +++..|.|++||++|.|+. +.-.++.|+
T Consensus 308 T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~ 362 (414)
T 3oiy_A 308 YGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE 362 (414)
T ss_dssp TCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC
T ss_pred CchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE
Confidence 999999999999 9999999999 9999999999999999975 566777777
No 42
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.36 E-value=1.5e-12 Score=139.06 Aligned_cols=117 Identities=15% Similarity=0.145 Sum_probs=102.1
Q ss_pred cCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecc
Q psy1089 222 SSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTR 301 (404)
Q Consensus 222 ~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~ 301 (404)
....|+.+|.+.+......+.++||||......+.|...|...|+++..+||.....+|..+...|+.+ . ++++|+
T Consensus 413 ~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g---~-VlIATd 488 (844)
T 1tf5_A 413 TMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG---A-VTIATN 488 (844)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT---C-EEEEET
T ss_pred CHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC---e-EEEeCC
Confidence 346799999998887666788999999999999999999999999999999998877776555555544 2 688899
Q ss_pred ccccCCCCC--------CCCEEEEecCCCCchhHHHHHHhhhccCCCCc
Q psy1089 302 AGGQGLNLT--------AADTCILYDSDWNPQVDIQAEARCHRIGQTKP 342 (404)
Q Consensus 302 a~g~GlnL~--------~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~ 342 (404)
++|+|+|+. +..+||++|.|-++..|.|++||+||.|....
T Consensus 489 mAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~ 537 (844)
T 1tf5_A 489 MAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGI 537 (844)
T ss_dssp TSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEE
T ss_pred ccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCe
Confidence 999999998 78899999999999999999999999997654
No 43
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.36 E-value=8.2e-14 Score=142.17 Aligned_cols=122 Identities=17% Similarity=0.267 Sum_probs=0.0
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecccc
Q psy1089 224 SGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAG 303 (404)
Q Consensus 224 S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~ 303 (404)
..|+..+..++... .+.++||||+....++.+...|...|+.+..+||+++..+|..+++.|+++. .. +|++|+++
T Consensus 318 ~~~~~~l~~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~-~~-iLv~T~~~ 393 (479)
T 3fmp_B 318 DEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGK-EK-VLVTTNVC 393 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhhc--cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCC-Cc-EEEEcccc
Confidence 45666666666543 4579999999999999999999999999999999999999999999999985 33 67888999
Q ss_pred ccCCCCCCCCEEEEecCCCCc------hhHHHHHHhhhccCCCCcEEEEEEEeC
Q psy1089 304 GQGLNLTAADTCILYDSDWNP------QVDIQAEARCHRIGQTKPVCIYRLVSH 351 (404)
Q Consensus 304 g~GlnL~~a~~VI~~d~~wnp------~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~ 351 (404)
++|+|++++++||+||+||++ ..|.|++||++|.|+...+ +.|+..
T Consensus 394 ~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~--i~~~~~ 445 (479)
T 3fmp_B 394 ARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLA--VNMVDS 445 (479)
T ss_dssp ------------------------------------------------------
T ss_pred ccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceE--EEEEcC
Confidence 999999999999999999875 6899999999999976544 444443
No 44
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.35 E-value=4e-12 Score=133.40 Aligned_cols=118 Identities=14% Similarity=0.133 Sum_probs=102.0
Q ss_pred cCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecc
Q psy1089 222 SSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTR 301 (404)
Q Consensus 222 ~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~ 301 (404)
....|+..+.+.+......+.++||||.+....+.|...|...|+++..++|.....++..+...|+.+. ++++|+
T Consensus 455 t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g~----VtVATd 530 (822)
T 3jux_A 455 TQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKGM----VTIATN 530 (822)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTTC----EEEEET
T ss_pred cHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCCe----EEEEcc
Confidence 3457999999999887777889999999999999999999999999999999966555555555565552 788999
Q ss_pred ccccCCCCC--------CCCEEEEecCCCCchhHHHHHHhhhccCCCCcE
Q psy1089 302 AGGQGLNLT--------AADTCILYDSDWNPQVDIQAEARCHRIGQTKPV 343 (404)
Q Consensus 302 a~g~GlnL~--------~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V 343 (404)
.+|+|+|+. +..+||++++|-++..|.|++||++|.|.....
T Consensus 531 mAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a 580 (822)
T 3jux_A 531 MAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGES 580 (822)
T ss_dssp TTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEE
T ss_pred hhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeE
Confidence 999999997 778999999999999999999999999987643
No 45
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.33 E-value=7.6e-12 Score=132.97 Aligned_cols=125 Identities=14% Similarity=0.172 Sum_probs=109.5
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecccc
Q psy1089 224 SGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAG 303 (404)
Q Consensus 224 S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~ 303 (404)
.+++..+...+......+.++||||......+.|...|...|+++..+||+++..+|.++++.|..+. +. +|++|+++
T Consensus 422 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~-~~-VLvaT~~l 499 (664)
T 1c4o_A 422 ENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGH-YD-CLVGINLL 499 (664)
T ss_dssp TTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTS-CS-EEEESCCC
T ss_pred cchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCC-ce-EEEccChh
Confidence 45777777777766678899999999999999999999999999999999999999999999999885 34 67788999
Q ss_pred ccCCCCCCCCEEEEecC-----CCCchhHHHHHHhhhccCCCCcEEEEEEEeCCC
Q psy1089 304 GQGLNLTAADTCILYDS-----DWNPQVDIQAEARCHRIGQTKPVCIYRLVSHST 353 (404)
Q Consensus 304 g~GlnL~~a~~VI~~d~-----~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~T 353 (404)
++|+|++.++.||++|. |+++..+.|++||++|.|. -.++.++...+
T Consensus 500 ~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~~---G~~i~~~~~~~ 551 (664)
T 1c4o_A 500 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAR---GEVWLYADRVS 551 (664)
T ss_dssp CTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT---CEEEEECSSCC
T ss_pred hcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCCC---CEEEEEEcCCC
Confidence 99999999999999998 8999999999999999862 35666776655
No 46
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.31 E-value=6.9e-13 Score=136.74 Aligned_cols=123 Identities=20% Similarity=0.271 Sum_probs=85.1
Q ss_pred CCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccc
Q psy1089 223 SSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRA 302 (404)
Q Consensus 223 ~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a 302 (404)
...|...+.+++... .+.++||||+....++.+...|...|+.+..+||+++..+|..+++.|+++. .. +|++|++
T Consensus 341 ~~~k~~~l~~ll~~~--~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~-~~-VLVaT~~ 416 (508)
T 3fho_A 341 EEHKYNVLVELYGLL--TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGT-SK-VLVTTNV 416 (508)
T ss_dssp CHHHHHHHHHHHC-----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSS-CC-CCEECC-
T ss_pred hHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCC-Ce-EEEeCCh
Confidence 345666676666543 5679999999999999999999999999999999999999999999999885 33 6778899
Q ss_pred cccCCCCCCCCEEEEecCC------CCchhHHHHHHhhhccCCCCcEEEEEEEeC
Q psy1089 303 GGQGLNLTAADTCILYDSD------WNPQVDIQAEARCHRIGQTKPVCIYRLVSH 351 (404)
Q Consensus 303 ~g~GlnL~~a~~VI~~d~~------wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~ 351 (404)
+++|+|++.+++||++|+| +++..+.|++||++|.|+...+ +.|+..
T Consensus 417 l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~--i~l~~~ 469 (508)
T 3fho_A 417 IARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVS--INFVHD 469 (508)
T ss_dssp ----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEE--EEEECT
T ss_pred hhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEE--EEEEeC
Confidence 9999999999999999999 7899999999999999976544 444443
No 47
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.31 E-value=1.2e-11 Score=131.40 Aligned_cols=126 Identities=16% Similarity=0.151 Sum_probs=109.5
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecccc
Q psy1089 224 SGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAG 303 (404)
Q Consensus 224 S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~ 303 (404)
.+++..+...+......+.++||||......+.|...|...|+++..+||+++..+|.++++.|+++. +. +|++|+++
T Consensus 428 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~-~~-VLVaT~~l 505 (661)
T 2d7d_A 428 EGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGK-YD-VLVGINLL 505 (661)
T ss_dssp TTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTS-CS-EEEESCCC
T ss_pred cchHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCC-eE-EEEecchh
Confidence 45667776667666667899999999999999999999999999999999999999999999999885 33 67888999
Q ss_pred ccCCCCCCCCEEEEecC-----CCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCH
Q psy1089 304 GQGLNLTAADTCILYDS-----DWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTY 354 (404)
Q Consensus 304 g~GlnL~~a~~VI~~d~-----~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~Ti 354 (404)
++|+|++.+++||++|. |+++..|.|++||++|.+ .-.++.|+...+.
T Consensus 506 ~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~~---~G~~i~~~~~~~~ 558 (661)
T 2d7d_A 506 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA---EGRVIMYADKITK 558 (661)
T ss_dssp STTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTST---TCEEEEECSSCCH
T ss_pred hCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCCC---CCEEEEEEeCCCH
Confidence 99999999999999998 899999999999999972 3456667777653
No 48
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.28 E-value=1.3e-11 Score=131.63 Aligned_cols=117 Identities=13% Similarity=0.128 Sum_probs=104.2
Q ss_pred cCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecc
Q psy1089 222 SSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTR 301 (404)
Q Consensus 222 ~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~ 301 (404)
....|+.++.+.+......+.++||||.+....+.|...|...|+++..++|.....++..+...|+.+. ++++|+
T Consensus 422 ~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G~----VtIATn 497 (853)
T 2fsf_A 422 TEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPAA----VTIATN 497 (853)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTTC----EEEEES
T ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCCe----EEEecc
Confidence 4467999999999877778889999999999999999999999999999999988777777777888762 788999
Q ss_pred ccccCCCCCCC-------------------------------------CEEEEecCCCCchhHHHHHHhhhccCCCCc
Q psy1089 302 AGGQGLNLTAA-------------------------------------DTCILYDSDWNPQVDIQAEARCHRIGQTKP 342 (404)
Q Consensus 302 a~g~GlnL~~a-------------------------------------~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~ 342 (404)
.+|+|+|+... .|||++|.|-++..|.|+.||+||.|....
T Consensus 498 mAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~ 575 (853)
T 2fsf_A 498 MAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGS 575 (853)
T ss_dssp CCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEE
T ss_pred cccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCee
Confidence 99999999853 599999999999999999999999997653
No 49
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.27 E-value=1.8e-11 Score=135.45 Aligned_cols=135 Identities=13% Similarity=0.068 Sum_probs=111.3
Q ss_pred HHHHHHHHhhh-CCCeEEEEecchHHHHHHHHHHHhcCCc---------------------------------------e
Q psy1089 229 VLNQLLHKLKQ-TNHKTLVFSTMVKVLNFIEELCVLENYN---------------------------------------Y 268 (404)
Q Consensus 229 ~L~~ll~~l~~-~~~KvlIFs~~~~~l~~L~~~L~~~gi~---------------------------------------~ 268 (404)
.+..++..+.. .+.++|||+.....++.+...|...++. +
T Consensus 330 ~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI 409 (1010)
T 2xgj_A 330 DIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGI 409 (1010)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTE
T ss_pred HHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCe
Confidence 34455555544 4469999999999999999988765543 6
Q ss_pred EeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEE----ecC----CCCchhHHHHHHhhhccCCC
Q psy1089 269 YRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCIL----YDS----DWNPQVDIQAEARCHRIGQT 340 (404)
Q Consensus 269 ~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~----~d~----~wnp~~~~Qa~gR~~R~Gq~ 340 (404)
..+||++++.+|..+++.|+++. ++ +|++|.++++|+|++++++||. ||. ||++..|.|++||+||.|+.
T Consensus 410 ~~~Hggl~~~eR~~ve~~F~~G~-ik-VLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d 487 (1010)
T 2xgj_A 410 GIHHSGLLPILKEVIEILFQEGF-LK-VLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLD 487 (1010)
T ss_dssp EEESTTSCHHHHHHHHHHHHTTC-CS-EEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTC
T ss_pred eEECCCCCHHHHHHHHHHHhcCC-Cc-EEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCC
Confidence 77899999999999999999985 44 5777799999999999999999 999 99999999999999999998
Q ss_pred CcEEEEEEEeCCCHHHHHHHHHhcC
Q psy1089 341 KPVCIYRLVSHSTYQVHLFTIDSSG 365 (404)
Q Consensus 341 ~~V~Vy~Li~~~TiEe~i~~~~~~K 365 (404)
...++|.++..+.-++.+.++...+
T Consensus 488 ~~G~vi~l~~~~~e~~~~~~l~~~~ 512 (1010)
T 2xgj_A 488 DRGIVIMMIDEKMEPQVAKGMVKGQ 512 (1010)
T ss_dssp SSEEEEEEECSCCCHHHHHHHHSCC
T ss_pred CceEEEEEECCCCCHHHHHHHHhCC
Confidence 8899999998775455555554444
No 50
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.23 E-value=3.7e-11 Score=128.55 Aligned_cols=117 Identities=13% Similarity=0.115 Sum_probs=102.5
Q ss_pred cCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecc
Q psy1089 222 SSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTR 301 (404)
Q Consensus 222 ~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~ 301 (404)
....|+.++.+.+......|.++||||.+....+.|...|...|+++..++|.....++..+...|+.+. ++++|+
T Consensus 441 t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G~----VtIATn 516 (922)
T 1nkt_A 441 TEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRGG----VTVATN 516 (922)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTTC----EEEEET
T ss_pred CHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCCe----EEEecc
Confidence 3457999999988877778889999999999999999999999999999999987766666667777662 688899
Q ss_pred ccccCCCCCCC----------------------------------------------------CEEEEecCCCCchhHHH
Q psy1089 302 AGGQGLNLTAA----------------------------------------------------DTCILYDSDWNPQVDIQ 329 (404)
Q Consensus 302 a~g~GlnL~~a----------------------------------------------------~~VI~~d~~wnp~~~~Q 329 (404)
.+|+|+|+... .+||++|.|-++..|.|
T Consensus 517 mAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~q 596 (922)
T 1nkt_A 517 MAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQ 596 (922)
T ss_dssp TCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHH
T ss_pred hhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHH
Confidence 99999999853 59999999999999999
Q ss_pred HHHhhhccCCCCc
Q psy1089 330 AEARCHRIGQTKP 342 (404)
Q Consensus 330 a~gR~~R~Gq~~~ 342 (404)
+.||+||.|....
T Consensus 597 r~GRTGRqGdpG~ 609 (922)
T 1nkt_A 597 LRGRSGRQGDPGE 609 (922)
T ss_dssp HHHTSSGGGCCEE
T ss_pred HhcccccCCCCee
Confidence 9999999997653
No 51
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.21 E-value=8.4e-11 Score=125.90 Aligned_cols=120 Identities=16% Similarity=0.065 Sum_probs=98.4
Q ss_pred HHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcC------------------------------------CceEeccCCc
Q psy1089 232 QLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLEN------------------------------------YNYYRLHGSI 275 (404)
Q Consensus 232 ~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~g------------------------------------i~~~~i~G~~ 275 (404)
.++......+.++|||++.....+.+...|.... ..+..+||++
T Consensus 243 ~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l 322 (715)
T 2va8_A 243 AYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGL 322 (715)
T ss_dssp HHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTS
T ss_pred HHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCC
Confidence 3333344578899999999999999988887532 2478899999
Q ss_pred CHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEE----ec-------CCCCchhHHHHHHhhhccCCCCcEE
Q psy1089 276 RNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCIL----YD-------SDWNPQVDIQAEARCHRIGQTKPVC 344 (404)
Q Consensus 276 ~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~----~d-------~~wnp~~~~Qa~gR~~R~Gq~~~V~ 344 (404)
+.++|..+.+.|.++. ++ +|++|.++++|+|+++.++||. || .|+++..+.|+.||+||.|+..+-.
T Consensus 323 ~~~~r~~v~~~f~~g~-~~-vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~ 400 (715)
T 2va8_A 323 SKALRDLIEEGFRQRK-IK-VIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGE 400 (715)
T ss_dssp CHHHHHHHHHHHHTTC-SC-EEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEE
T ss_pred CHHHHHHHHHHHHcCC-Ce-EEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCce
Confidence 9999999999999984 44 5778899999999999999998 88 8999999999999999999988889
Q ss_pred EEEEEeCCC
Q psy1089 345 IYRLVSHST 353 (404)
Q Consensus 345 Vy~Li~~~T 353 (404)
+|.+++...
T Consensus 401 ~~~l~~~~~ 409 (715)
T 2va8_A 401 SIVVVRDKE 409 (715)
T ss_dssp EEEECSCGG
T ss_pred EEEEeCCch
Confidence 999988765
No 52
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.20 E-value=4.9e-11 Score=127.51 Aligned_cols=118 Identities=16% Similarity=0.108 Sum_probs=101.0
Q ss_pred hhhCCCeEEEEecchHHHHHHHHHHHhc------------------------------CCceEeccCCcCHHHHHHHHHH
Q psy1089 237 LKQTNHKTLVFSTMVKVLNFIEELCVLE------------------------------NYNYYRLHGSIRNEERNDAVQQ 286 (404)
Q Consensus 237 l~~~~~KvlIFs~~~~~l~~L~~~L~~~------------------------------gi~~~~i~G~~~~~~R~~~i~~ 286 (404)
....+.++|||++.....+.+...|... +..+..+||+++.++|..+.+.
T Consensus 238 ~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~ 317 (702)
T 2p6r_A 238 CVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDA 317 (702)
T ss_dssp HHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHH
T ss_pred HHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHH
Confidence 3457889999999999999888877642 1346779999999999999999
Q ss_pred HhCCCCceEEEeeccccccCCCCCCCCEEEE----ec---CCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHH
Q psy1089 287 FNGSTEWGVFLLSTRAGGQGLNLTAADTCIL----YD---SDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQV 356 (404)
Q Consensus 287 F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~----~d---~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe 356 (404)
|.++. ++ +|++|.++++|+|+++.++||. || .|+++..+.|+.||+||.|+.+.-.+|.+++....+.
T Consensus 318 f~~g~-~~-vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~ 392 (702)
T 2p6r_A 318 FRRGN-IK-VVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREI 392 (702)
T ss_dssp HHTTS-CC-EEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHH
T ss_pred HHCCC-Ce-EEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHH
Confidence 99984 44 6778899999999999999998 66 7899999999999999999988899999998877543
No 53
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.19 E-value=4.4e-11 Score=133.55 Aligned_cols=137 Identities=14% Similarity=0.084 Sum_probs=109.8
Q ss_pred HHHHHHHHHHhhh-CCCeEEEEecchHHHHHHHHHHHhcCCc--------------------------------------
Q psy1089 227 MIVLNQLLHKLKQ-TNHKTLVFSTMVKVLNFIEELCVLENYN-------------------------------------- 267 (404)
Q Consensus 227 l~~L~~ll~~l~~-~~~KvlIFs~~~~~l~~L~~~L~~~gi~-------------------------------------- 267 (404)
...+..++..+.. .+.++||||.....++.+...|...++.
T Consensus 426 ~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~ 505 (1108)
T 3l9o_A 426 KGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRR 505 (1108)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHH
T ss_pred hhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhc
Confidence 3445556665544 4569999999999999999888654332
Q ss_pred -eEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEecCCCCch--------hHHHHHHhhhccC
Q psy1089 268 -YYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQ--------VDIQAEARCHRIG 338 (404)
Q Consensus 268 -~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~--------~~~Qa~gR~~R~G 338 (404)
+..+||++++.+|..++..|.++. +. +|++|.++++|||++++++||.++.+|++. .|.|+.||+||.|
T Consensus 506 gV~~~Hg~l~~~~R~~v~~~F~~G~-ik-VLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G 583 (1108)
T 3l9o_A 506 GIGIHHSGLLPILKEVIEILFQEGF-LK-VLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRG 583 (1108)
T ss_dssp TEEEECSCSCHHHHHHHHHHHHHTC-CC-EEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSS
T ss_pred CeeeecCCCCHHHHHHHHHHHhCCC-Ce-EEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCC
Confidence 678999999999999999999985 44 677889999999999999999988877765 4999999999999
Q ss_pred CCCcEEEEEEEeCCCHHHHHHHHHhcC
Q psy1089 339 QTKPVCIYRLVSHSTYQVHLFTIDSSG 365 (404)
Q Consensus 339 q~~~V~Vy~Li~~~TiEe~i~~~~~~K 365 (404)
+....++|.++..+..+..+...+..+
T Consensus 584 ~d~~G~~ill~~~~~~~~~~~~l~~~~ 610 (1108)
T 3l9o_A 584 LDDRGIVIMMIDEKMEPQVAKGMVKGQ 610 (1108)
T ss_dssp SCSSEEEEEEECCCCCHHHHHHHHHCC
T ss_pred CCCceEEEEEecCCcCHHHHHHHhcCC
Confidence 988999999998886666666666554
No 54
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.18 E-value=8.9e-11 Score=125.87 Aligned_cols=120 Identities=13% Similarity=0.025 Sum_probs=102.2
Q ss_pred hhhCCCeEEEEecchHHHHHHHHHHHhc------------------C---------------CceEeccCCcCHHHHHHH
Q psy1089 237 LKQTNHKTLVFSTMVKVLNFIEELCVLE------------------N---------------YNYYRLHGSIRNEERNDA 283 (404)
Q Consensus 237 l~~~~~KvlIFs~~~~~l~~L~~~L~~~------------------g---------------i~~~~i~G~~~~~~R~~~ 283 (404)
....+.++|||++.....+.+...|... + ..+..+||+++.++|..+
T Consensus 233 ~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v 312 (720)
T 2zj8_A 233 AIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLV 312 (720)
T ss_dssp HHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHH
T ss_pred HHhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHH
Confidence 3346789999999999999888887642 1 247889999999999999
Q ss_pred HHHHhCCCCceEEEeeccccccCCCCCCCCEEEE----ec----CCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHH
Q psy1089 284 VQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCIL----YD----SDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355 (404)
Q Consensus 284 i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~----~d----~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiE 355 (404)
.+.|.++. ++ +|++|.++++|+|+++.++||. || .|+++..+.|+.||+||.|+...-.+|.+++....+
T Consensus 313 ~~~f~~g~-~~-vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~ 390 (720)
T 2zj8_A 313 EENFRKGI-IK-AVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPR 390 (720)
T ss_dssp HHHHHTTS-SC-EEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHH
T ss_pred HHHHHCCC-Ce-EEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHH
Confidence 99999984 44 5678899999999999999998 77 689999999999999999998888999999988855
Q ss_pred HHH
Q psy1089 356 VHL 358 (404)
Q Consensus 356 e~i 358 (404)
..+
T Consensus 391 ~~~ 393 (720)
T 2zj8_A 391 EVM 393 (720)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 55
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.17 E-value=7.2e-11 Score=132.43 Aligned_cols=123 Identities=17% Similarity=0.221 Sum_probs=102.9
Q ss_pred cHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhc--CCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccc
Q psy1089 225 GKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLE--NYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRA 302 (404)
Q Consensus 225 ~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~--gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a 302 (404)
.+......++..+ ..+.+++|||+....++.+...|+.. ++.+..+||+++..+|.+++++|.++. +. +|++|.+
T Consensus 797 ~~~~i~~~il~~l-~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~-~~-VLVaT~v 873 (1151)
T 2eyq_A 797 DSMVVREAILREI-LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQR-FN-VLVCTTI 873 (1151)
T ss_dssp CHHHHHHHHHHHH-TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTS-CC-EEEESST
T ss_pred CHHHHHHHHHHHH-hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCC-Cc-EEEECCc
Confidence 3444445555544 46789999999999999999999876 889999999999999999999999885 34 6778899
Q ss_pred cccCCCCCCCCEEEEecC-CCCchhHHHHHHhhhccCCCCcEEEEEEEeCC
Q psy1089 303 GGQGLNLTAADTCILYDS-DWNPQVDIQAEARCHRIGQTKPVCIYRLVSHS 352 (404)
Q Consensus 303 ~g~GlnL~~a~~VI~~d~-~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~ 352 (404)
+++|+|++.+++||+++. +|++..+.|+.||+||.|+.. .+|.++..+
T Consensus 874 ~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g--~~~ll~~~~ 922 (1151)
T 2eyq_A 874 IETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA--YAWLLTPHP 922 (1151)
T ss_dssp TGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCE--EEEEEECCG
T ss_pred ceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCce--EEEEEECCc
Confidence 999999999999999988 689999999999999999654 455555543
No 56
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.15 E-value=1.6e-10 Score=122.58 Aligned_cols=109 Identities=16% Similarity=0.161 Sum_probs=94.7
Q ss_pred CeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEecC-
Q psy1089 242 HKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDS- 320 (404)
Q Consensus 242 ~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~d~- 320 (404)
...+||+.....++.+...|...|+.+..+||++++++|..+++.|+++++..-+|++|+++++|+|+ .+++||+++.
T Consensus 321 ~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~ 399 (677)
T 3rc3_A 321 PGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLI 399 (677)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSB
T ss_pred CCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCcc
Confidence 44588899999999999999999999999999999999999999999833234467888999999999 9999999999
Q ss_pred -------------CCCchhHHHHHHhhhccCCCC-cEEEEEEEeC
Q psy1089 321 -------------DWNPQVDIQAEARCHRIGQTK-PVCIYRLVSH 351 (404)
Q Consensus 321 -------------~wnp~~~~Qa~gR~~R~Gq~~-~V~Vy~Li~~ 351 (404)
|++...+.|+.||+||.|... .-.+|.+...
T Consensus 400 k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 400 KPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp C-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred ccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 889999999999999999873 4667666444
No 57
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.09 E-value=6.7e-11 Score=119.76 Aligned_cols=97 Identities=13% Similarity=0.078 Sum_probs=78.5
Q ss_pred hhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEE
Q psy1089 238 KQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCIL 317 (404)
Q Consensus 238 ~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~ 317 (404)
.+.+.++||||+.....+.+...|+..|+++..+|| ++|.++++.|+++. +. +|++|+++++|+|++ +++||+
T Consensus 174 ~~~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~-~~-vLVaT~v~e~GiDip-v~~VI~ 246 (440)
T 1yks_A 174 LADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQKK-PD-FILATDIAEMGANLC-VERVLD 246 (440)
T ss_dssp HHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------CC-CS-EEEESSSTTCCTTCC-CSEEEE
T ss_pred HhcCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCCC-ce-EEEECChhheeeccC-ceEEEe
Confidence 345789999999999999999999999999999999 46889999999985 34 677889999999999 999985
Q ss_pred -------------------ecCCCCchhHHHHHHhhhccC-CCC
Q psy1089 318 -------------------YDSDWNPQVDIQAEARCHRIG-QTK 341 (404)
Q Consensus 318 -------------------~d~~wnp~~~~Qa~gR~~R~G-q~~ 341 (404)
++.|.++..|.|+.||++|.| +..
T Consensus 247 ~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g 290 (440)
T 1yks_A 247 CRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDG 290 (440)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCC
T ss_pred CCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCc
Confidence 899999999999999999985 443
No 58
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.06 E-value=3e-10 Score=115.24 Aligned_cols=96 Identities=19% Similarity=0.162 Sum_probs=85.6
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEe
Q psy1089 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILY 318 (404)
Q Consensus 239 ~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~ 318 (404)
..+.++|||++.....+.+...|...|+.+..+||.. ++++++.|+++. .. +|++|+++++|+|++. ++||++
T Consensus 186 ~~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~----~~~~~~~f~~g~-~~-vLVaT~v~~~GiDip~-~~VI~~ 258 (451)
T 2jlq_A 186 DYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKT----FDTEYPKTKLTD-WD-FVVTTDISEMGANFRA-GRVIDP 258 (451)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTT----HHHHGGGGGSSC-CS-EEEECGGGGSSCCCCC-SEEEEC
T ss_pred hCCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHH----HHHHHHhhccCC-ce-EEEECCHHHhCcCCCC-CEEEEC
Confidence 3567999999999999999999999999999999965 467999999885 33 6788899999999999 999999
Q ss_pred c--------------------CCCCchhHHHHHHhhhccCCCC
Q psy1089 319 D--------------------SDWNPQVDIQAEARCHRIGQTK 341 (404)
Q Consensus 319 d--------------------~~wnp~~~~Qa~gR~~R~Gq~~ 341 (404)
| .|.++..|.|++||++|.|...
T Consensus 259 ~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~ 301 (451)
T 2jlq_A 259 RRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQE 301 (451)
T ss_dssp CEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCC
T ss_pred CCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCC
Confidence 8 8999999999999999999733
No 59
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.06 E-value=6.6e-10 Score=122.98 Aligned_cols=133 Identities=18% Similarity=0.103 Sum_probs=109.1
Q ss_pred cHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCC--------------------------------------
Q psy1089 225 GKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENY-------------------------------------- 266 (404)
Q Consensus 225 ~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi-------------------------------------- 266 (404)
.++..+.+.+.. ....++|||+.....++.+...|...|+
T Consensus 322 ~~~~~li~~l~~--~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~ 399 (997)
T 4a4z_A 322 KTWPEIVNYLRK--RELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLE 399 (997)
T ss_dssp THHHHHHHHHHH--TTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHT
T ss_pred hHHHHHHHHHHh--CCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhh
Confidence 445555555543 2457999999999999999999877665
Q ss_pred -ceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEecCCC---------CchhHHHHHHhhhc
Q psy1089 267 -NYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDW---------NPQVDIQAEARCHR 336 (404)
Q Consensus 267 -~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~d~~w---------np~~~~Qa~gR~~R 336 (404)
.+..+||++++.+|..+++.|..+. +. +|++|.++++|||+++ ..||+++.+. ++..|.|+.||+||
T Consensus 400 ~gi~~~H~gl~~~~R~~v~~~F~~G~-~k-VLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR 476 (997)
T 4a4z_A 400 RGIAVHHGGLLPIVKELIEILFSKGF-IK-VLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGR 476 (997)
T ss_dssp TTEEEECTTSCHHHHHHHHHHHHTTC-CS-EEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCC
T ss_pred cCeeeecCCCCHHHHHHHHHHHHCCC-Cc-EEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhccccc
Confidence 4688999999999999999999985 44 5778899999999999 6666655554 89999999999999
Q ss_pred cCCCCcEEEEEEEeCCCHHHHHHHHH
Q psy1089 337 IGQTKPVCIYRLVSHSTYQVHLFTID 362 (404)
Q Consensus 337 ~Gq~~~V~Vy~Li~~~TiEe~i~~~~ 362 (404)
.|+....++|.+...+..++.+++..
T Consensus 477 ~G~~~~G~vi~l~~~~~~~~~~~~~~ 502 (997)
T 4a4z_A 477 RGLDSTGTVIVMAYNSPLSIATFKEV 502 (997)
T ss_dssp TTTCSSEEEEEECCSSCCCHHHHHHH
T ss_pred CCCCcceEEEEecCCCcchHHHHHHH
Confidence 99998899999987777777777654
No 60
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.04 E-value=8.4e-11 Score=126.64 Aligned_cols=120 Identities=13% Similarity=0.216 Sum_probs=96.8
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEecchH--------HHHHHHHHHHh---cCCceEeccCCcCHHHHHHHHHHHhCCCC
Q psy1089 224 SGKMIVLNQLLHKLKQTNHKTLVFSTMVK--------VLNFIEELCVL---ENYNYYRLHGSIRNEERNDAVQQFNGSTE 292 (404)
Q Consensus 224 S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~--------~l~~L~~~L~~---~gi~~~~i~G~~~~~~R~~~i~~F~~~~~ 292 (404)
..+...+.+.+......+.+++|||+... .++.+.+.|.. .++.+..+||+++..+|..+++.|+++.
T Consensus 561 ~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~- 639 (780)
T 1gm5_A 561 MDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGR- 639 (780)
T ss_dssp SSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTS-
T ss_pred cchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCC-
Confidence 44556666777666678899999998653 35667777876 5788999999999999999999999985
Q ss_pred ceEEEeeccccccCCCCCCCCEEEEecCCC-CchhHHHHHHhhhccCCCCcEEE
Q psy1089 293 WGVFLLSTRAGGQGLNLTAADTCILYDSDW-NPQVDIQAEARCHRIGQTKPVCI 345 (404)
Q Consensus 293 ~~vlLis~~a~g~GlnL~~a~~VI~~d~~w-np~~~~Qa~gR~~R~Gq~~~V~V 345 (404)
+. +|++|+++++|+|++++++||++++++ +...+.|+.||+||.|+...|.+
T Consensus 640 ~~-ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~il 692 (780)
T 1gm5_A 640 YD-ILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFL 692 (780)
T ss_dssp SS-BCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEEC
T ss_pred Ce-EEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEE
Confidence 33 678889999999999999999999985 78888999999999998765443
No 61
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.03 E-value=1.4e-10 Score=118.09 Aligned_cols=105 Identities=19% Similarity=0.158 Sum_probs=87.9
Q ss_pred CCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEE--
Q psy1089 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCIL-- 317 (404)
Q Consensus 240 ~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~-- 317 (404)
.+.++|||++....++.+...|...|+.+..+||. +|..+++.|.++. .. +|++|+++++|+|++. ++||+
T Consensus 189 ~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~-~~-iLVaT~v~~~GiDip~-~~VI~~G 261 (459)
T 2z83_A 189 YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNGD-WD-FVITTDISEMGANFGA-SRVIDCR 261 (459)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSCC-CS-EEEESSCC---CCCSC-SEEEECC
T ss_pred cCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCCC-ce-EEEECChHHhCeecCC-CEEEECC
Confidence 47899999999999999999999999999999995 6888999999884 33 6788899999999999 99998
Q ss_pred ------------------ecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCC
Q psy1089 318 ------------------YDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHS 352 (404)
Q Consensus 318 ------------------~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~ 352 (404)
||.|.++..|.|++||++|.|... -..|.|++..
T Consensus 262 ~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~-G~~~~~~~~~ 313 (459)
T 2z83_A 262 KSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQV-GDEYHYGGAT 313 (459)
T ss_dssp EECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCC-CEEEEECSCC
T ss_pred cccccccccccccccccccCCCCCHHHHHHhccccCCCCCCC-CeEEEEEccc
Confidence 789999999999999999999632 3445666664
No 62
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.01 E-value=4.1e-10 Score=119.60 Aligned_cols=98 Identities=20% Similarity=0.227 Sum_probs=86.2
Q ss_pred hhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEE
Q psy1089 237 LKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCI 316 (404)
Q Consensus 237 l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI 316 (404)
+.+.+.++||||+.....+.+...|...|+.+..+||. +|.++++.|.++. .. +|++|+++++|+|++ +++||
T Consensus 406 l~~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~-~~-VLVaTdv~e~GIDip-v~~VI 478 (673)
T 2wv9_A 406 ITDYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGD-WD-FVITTDISEMGANFG-ASRVI 478 (673)
T ss_dssp HHSCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCC-CS-EEEECGGGGTTCCCC-CSEEE
T ss_pred HHhCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCC-ce-EEEECchhhcceeeC-CcEEE
Confidence 34468899999999999999999999999999999993 7999999999985 34 677889999999999 99999
Q ss_pred E--------------------ecCCCCchhHHHHHHhhhcc-CCCC
Q psy1089 317 L--------------------YDSDWNPQVDIQAEARCHRI-GQTK 341 (404)
Q Consensus 317 ~--------------------~d~~wnp~~~~Qa~gR~~R~-Gq~~ 341 (404)
+ +|+|.++..|.|+.||++|. |+..
T Consensus 479 ~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G 524 (673)
T 2wv9_A 479 DCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIG 524 (673)
T ss_dssp ECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCC
T ss_pred ECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCC
Confidence 7 56888889999999999999 4443
No 63
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.00 E-value=2.7e-10 Score=119.98 Aligned_cols=105 Identities=17% Similarity=0.156 Sum_probs=89.8
Q ss_pred hhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEE--
Q psy1089 238 KQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTC-- 315 (404)
Q Consensus 238 ~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~V-- 315 (404)
.+.+.++||||+.....+.+...|...|+++..+||. +|.++++.|+++. .. +|++|+++++|+|+. +++|
T Consensus 352 ~~~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~-~~-VLVaTdv~~rGiDi~-v~~VId 424 (618)
T 2whx_A 352 TDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTD-WD-FVVTTDISEMGANFR-AGRVID 424 (618)
T ss_dssp HHCCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSC-CS-EEEECGGGGTTCCCC-CSEEEE
T ss_pred HhCCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCC-cE-EEEECcHHHcCcccC-ceEEEE
Confidence 3457899999999999999999999999999999984 6888999999884 33 678889999999996 8888
Q ss_pred ------------------EEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEe
Q psy1089 316 ------------------ILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVS 350 (404)
Q Consensus 316 ------------------I~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~ 350 (404)
|++|.|-++..|.|++||++|.|.... ..|.|++
T Consensus 425 ~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G-~ai~l~~ 476 (618)
T 2whx_A 425 PRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQED-DQYVFSG 476 (618)
T ss_dssp CCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCC-EEEEECS
T ss_pred CcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCC-eEEEEcc
Confidence 777888999999999999999986443 3566665
No 64
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.00 E-value=2.6e-10 Score=123.14 Aligned_cols=110 Identities=15% Similarity=0.139 Sum_probs=95.7
Q ss_pred CCCeEEEEecchHHHHHHHHHHHh-----------cCCceEeccCCcCHHHHHHHHHHHh-----CCCCceEEEeecccc
Q psy1089 240 TNHKTLVFSTMVKVLNFIEELCVL-----------ENYNYYRLHGSIRNEERNDAVQQFN-----GSTEWGVFLLSTRAG 303 (404)
Q Consensus 240 ~~~KvlIFs~~~~~l~~L~~~L~~-----------~gi~~~~i~G~~~~~~R~~~i~~F~-----~~~~~~vlLis~~a~ 303 (404)
.+.++|||++....++.+...|.. .++.+..+||+++.++|.++++.|. ++ ..-+|++|.++
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g--~~kVlVAT~ia 379 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRP--GRKVVISTNIA 379 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSC--CEEEEEECTHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCC--ceEEEEeCcHH
Confidence 578999999999999999988874 5788999999999999999999998 55 45577888999
Q ss_pred ccCCCCCCCCEEEEecC------------------CCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCH
Q psy1089 304 GQGLNLTAADTCILYDS------------------DWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTY 354 (404)
Q Consensus 304 g~GlnL~~a~~VI~~d~------------------~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~Ti 354 (404)
++|||+++.++||.++. |.+...+.|+.||+||. ++-.+|+|+++..+
T Consensus 380 e~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 380 ETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYTEEAF 445 (773)
T ss_dssp HHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEESSCHHHH
T ss_pred HhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEEEEEecHHHh
Confidence 99999999999999776 88999999999999998 34578888865544
No 65
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.00 E-value=3.3e-10 Score=126.13 Aligned_cols=89 Identities=11% Similarity=0.129 Sum_probs=71.3
Q ss_pred CCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEee---
Q psy1089 223 SSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLS--- 299 (404)
Q Consensus 223 ~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis--- 299 (404)
...|...|.+++... +.++||||+....++.+...|... +++..+||++ ..+++.|+++. ..||+.+
T Consensus 260 ~~~k~~~L~~ll~~~---~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~-~~VLVaTas~ 329 (1054)
T 1gku_B 260 NDESISTLSSILEKL---GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGE-IDHLIGTAHY 329 (1054)
T ss_dssp SCCCTTTTHHHHTTS---CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTS-CSEEEEECC-
T ss_pred chhHHHHHHHHHhhc---CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCC-CcEEEEecCC
Confidence 456777777777543 679999999999999999999888 9999999987 47889999985 6666664
Q ss_pred ccccccCCCCCCC-CEEEEecCC
Q psy1089 300 TRAGGQGLNLTAA-DTCILYDSD 321 (404)
Q Consensus 300 ~~a~g~GlnL~~a-~~VI~~d~~ 321 (404)
|+++++|||++++ ++||++|.|
T Consensus 330 Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 330 YGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp -----CCSCCTTTCCEEEEESCC
T ss_pred CCeeEeccccCCcccEEEEeCCC
Confidence 8999999999995 999999999
No 66
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=98.97 E-value=1.1e-09 Score=122.44 Aligned_cols=88 Identities=13% Similarity=0.088 Sum_probs=77.0
Q ss_pred cHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceE-eccCCcCHHHHHHHHHHHhCCCCceEEEee---c
Q psy1089 225 GKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYY-RLHGSIRNEERNDAVQQFNGSTEWGVFLLS---T 300 (404)
Q Consensus 225 ~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~-~i~G~~~~~~R~~~i~~F~~~~~~~vlLis---~ 300 (404)
.|...|.+++.. .+.++||||+....++.+...|...|+++. .+|| +|.+ ++.|+++. ..||+.+ |
T Consensus 296 ~k~~~L~~ll~~---~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~-~~VLVatas~T 365 (1104)
T 4ddu_A 296 RSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGK-INILIGVQAYY 365 (1104)
T ss_dssp CCHHHHHHHHHH---HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTS-CSEEEEETTTH
T ss_pred CHHHHHHHHHHh---cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCC-CCEEEEecCCC
Confidence 678888888876 358999999999999999999999999998 9999 3555 99999985 5665554 9
Q ss_pred cccccCCCCCC-CCEEEEecCCC
Q psy1089 301 RAGGQGLNLTA-ADTCILYDSDW 322 (404)
Q Consensus 301 ~a~g~GlnL~~-a~~VI~~d~~w 322 (404)
+++++|||+++ +++||+||+|-
T Consensus 366 dvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 366 GKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp HHHCCSCCCTTTCCEEEEESCCE
T ss_pred CeeEecCcCCCCCCEEEEECCCC
Confidence 99999999999 99999999998
No 67
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=98.97 E-value=8.2e-10 Score=111.41 Aligned_cols=97 Identities=16% Similarity=0.169 Sum_probs=84.9
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCE----
Q psy1089 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADT---- 314 (404)
Q Consensus 239 ~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~---- 314 (404)
+.+.++||||+.....+.+...|...|+++..+||. +|.++++.|.++. .. +|++|+++++|+|++ ..+
T Consensus 169 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~-~~-vLVaT~v~e~GiDip-~~~VI~~ 241 (431)
T 2v6i_A 169 EFDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEK-WD-FVITTDISEMGANFK-ADRVIDP 241 (431)
T ss_dssp SCSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSC-CS-EEEECGGGGTSCCCC-CSEEEEC
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCC-Ce-EEEECchHHcCcccC-CcEEEec
Confidence 356799999999999999999999999999999997 5888999999985 33 678889999999999 544
Q ss_pred -------------EEEecCCCCchhHHHHHHhhhccCCCCc
Q psy1089 315 -------------CILYDSDWNPQVDIQAEARCHRIGQTKP 342 (404)
Q Consensus 315 -------------VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~ 342 (404)
||+++.|.++..+.|+.||++|.|....
T Consensus 242 g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~ 282 (431)
T 2v6i_A 242 RKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLG 282 (431)
T ss_dssp CEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCC
T ss_pred CccccceecccceeecccccCCHHHHHHhhhccCCCCCCCC
Confidence 6788999999999999999999996543
No 68
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=98.84 E-value=3.1e-09 Score=112.03 Aligned_cols=101 Identities=17% Similarity=0.119 Sum_probs=85.2
Q ss_pred CCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEE---
Q psy1089 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCI--- 316 (404)
Q Consensus 240 ~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI--- 316 (404)
.+.++|||++..+.++.+.+.|...|+++..+||++++++ |.++. . .+|++|+++++|||+. +++||
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~-~-~VLVATdVaerGIDId-V~~VI~~G 464 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIG-D-VVVVATDALMTGYTGD-FDSVIDCN 464 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSS-C-EEEEECTTHHHHCCCC-BSEEEECC
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCC-C-cEEEECChHHccCCCC-CcEEEecC
Confidence 5789999999999999999999999999999999999764 44432 2 5788899999999986 99888
Q ss_pred -------Eec-----------CCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCH
Q psy1089 317 -------LYD-----------SDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTY 354 (404)
Q Consensus 317 -------~~d-----------~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~Ti 354 (404)
+|| .|-++..|.||+||++| |... . |.|++.+..
T Consensus 465 l~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G-~--i~lvt~~e~ 516 (666)
T 3o8b_A 465 TCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRG-I--YRFVTPGER 516 (666)
T ss_dssp EEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCE-E--EEESCCCCB
T ss_pred cccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCC-E--EEEEecchh
Confidence 677 78888999999999999 6553 3 788887653
No 69
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=98.26 E-value=5.7e-06 Score=91.58 Aligned_cols=108 Identities=12% Similarity=0.041 Sum_probs=84.7
Q ss_pred CCCeEEEEecchHHHHHHHHHHHhcC------------Cce-EeccCC----------c----------CH---------
Q psy1089 240 TNHKTLVFSTMVKVLNFIEELCVLEN------------YNY-YRLHGS----------I----------RN--------- 277 (404)
Q Consensus 240 ~~~KvlIFs~~~~~l~~L~~~L~~~g------------i~~-~~i~G~----------~----------~~--------- 277 (404)
.+.+++|||.+...+..+...|...+ +++ +.++|+ + +.
T Consensus 536 ~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~ 615 (1038)
T 2w00_A 536 KGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAA 615 (1038)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHH
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHH
Confidence 35689999999999999988887543 444 455553 1 21
Q ss_pred --------------------HHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhcc
Q psy1089 278 --------------------EERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRI 337 (404)
Q Consensus 278 --------------------~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~ 337 (404)
..|..++++|++++ +. +|++++...+|+|.+.+ +++++|.|.....+.||+||++|.
T Consensus 616 I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~-i~-ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~ 692 (1038)
T 2w00_A 616 IREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQD-ID-LLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRI 692 (1038)
T ss_dssp HHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTS-SS-EEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCC
T ss_pred HHHHHHHhcccccccchhhhHHHHHHHHHHHcCC-Ce-EEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcC
Confidence 14788999999985 45 56667999999999999 788999999999999999999999
Q ss_pred CCC--CcEEEEEEEe
Q psy1089 338 GQT--KPVCIYRLVS 350 (404)
Q Consensus 338 Gq~--~~V~Vy~Li~ 350 (404)
+.. ....|+.++.
T Consensus 693 ~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 693 YDATKTFGNIVTFRD 707 (1038)
T ss_dssp CCTTCCSEEEEESSC
T ss_pred CCCCCCcEEEEEccc
Confidence 864 3467777764
No 70
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.18 E-value=4.1e-06 Score=97.23 Aligned_cols=116 Identities=20% Similarity=0.142 Sum_probs=89.6
Q ss_pred CCCeEEEEecchHHHHHHHHHHHh----c---------------------------------CCceEeccCCcCHHHHHH
Q psy1089 240 TNHKTLVFSTMVKVLNFIEELCVL----E---------------------------------NYNYYRLHGSIRNEERND 282 (404)
Q Consensus 240 ~~~KvlIFs~~~~~l~~L~~~L~~----~---------------------------------gi~~~~i~G~~~~~~R~~ 282 (404)
.++++||||+..+..+.++..|.. . ...+...||+++.++|..
T Consensus 316 ~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~ 395 (1724)
T 4f92_B 316 GKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTL 395 (1724)
T ss_dssp SSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHH
T ss_pred cCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHH
Confidence 467899999988776655555431 1 123567899999999999
Q ss_pred HHHHHhCCCCceEEEeeccccccCCCCCCCCEEEE----ecCC------CCchhHHHHHHhhhccCCCCcEEEEEEEeCC
Q psy1089 283 AVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCIL----YDSD------WNPQVDIQAEARCHRIGQTKPVCIYRLVSHS 352 (404)
Q Consensus 283 ~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~----~d~~------wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~ 352 (404)
+-+.|++|. ++ +|++|.+.+.|+|+++...||. |++. -++..+.|++||+||.|....-.++-+...+
T Consensus 396 vE~~F~~G~-i~-vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~ 473 (1724)
T 4f92_B 396 VEDLFADKH-IQ-VLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHG 473 (1724)
T ss_dssp HHHHHHTTC-CC-EEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEEST
T ss_pred HHHHHHCCC-Ce-EEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecch
Confidence 999999995 45 5677899999999998887774 5543 4688999999999999987666777777777
Q ss_pred CHHHH
Q psy1089 353 TYQVH 357 (404)
Q Consensus 353 TiEe~ 357 (404)
..+..
T Consensus 474 ~~~~~ 478 (1724)
T 4f92_B 474 ELQYY 478 (1724)
T ss_dssp TCCHH
T ss_pred hHHHH
Confidence 65543
No 71
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.11 E-value=5.8e-06 Score=95.97 Aligned_cols=121 Identities=18% Similarity=0.129 Sum_probs=89.3
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhc----------------------------------CCceEeccCCcCHHHHHHHH
Q psy1089 239 QTNHKTLVFSTMVKVLNFIEELCVLE----------------------------------NYNYYRLHGSIRNEERNDAV 284 (404)
Q Consensus 239 ~~~~KvlIFs~~~~~l~~L~~~L~~~----------------------------------gi~~~~i~G~~~~~~R~~~i 284 (404)
..+.++||||......+.++..|... ...+..+||+++..+|..+.
T Consensus 1153 ~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE 1232 (1724)
T 4f92_B 1153 SPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVE 1232 (1724)
T ss_dssp CSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHH
T ss_pred cCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHH
Confidence 35789999999988777665544210 12367789999999999999
Q ss_pred HHHhCCCCceEEEeeccccccCCCCCCCCEEEE----ec------CCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCH
Q psy1089 285 QQFNGSTEWGVFLLSTRAGGQGLNLTAADTCIL----YD------SDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTY 354 (404)
Q Consensus 285 ~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~----~d------~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~Ti 354 (404)
+.|.+|. ++| |++|.+.+.|+|+++...||. || .+.++..+.|++||+||.|....-.++-+....
T Consensus 1233 ~lF~~G~-i~V-LvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~-- 1308 (1724)
T 4f92_B 1233 QLFSSGA-IQV-VVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGS-- 1308 (1724)
T ss_dssp HHHHHTS-BCE-EEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGG--
T ss_pred HHHHCCC-CeE-EEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecch--
Confidence 9999995 554 567789999999998776663 22 245788999999999999987666666555443
Q ss_pred HHHHHHHHh
Q psy1089 355 QVHLFTIDS 363 (404)
Q Consensus 355 Ee~i~~~~~ 363 (404)
++..|+..-
T Consensus 1309 ~~~~~~~ll 1317 (1724)
T 4f92_B 1309 KKDFFKKFL 1317 (1724)
T ss_dssp GHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 444455443
No 72
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=97.29 E-value=0.0013 Score=70.91 Aligned_cols=121 Identities=15% Similarity=0.176 Sum_probs=94.8
Q ss_pred cCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHH---------------------------------------
Q psy1089 222 SSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCV--------------------------------------- 262 (404)
Q Consensus 222 ~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~--------------------------------------- 262 (404)
....|+.++.+-+......|..|||+|.+....+.|...|+
T Consensus 424 t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (997)
T 2ipc_A 424 TEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPA 503 (997)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSST
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccc
Confidence 34678999888888888889999999999999999999988
Q ss_pred -------------------------------------hcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecccccc
Q psy1089 263 -------------------------------------LENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQ 305 (404)
Q Consensus 263 -------------------------------------~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~ 305 (404)
..|+++-.++...-..+ ..+|.+=-. ...+-++|..+|+
T Consensus 504 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gI~H~VLNAK~he~E-AeIIAqAG~---~GaVTIATNMAGR 579 (997)
T 2ipc_A 504 QLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQGIPHQVLNAKHHARE-AEIVAQAGR---SKTVTIATNMAGR 579 (997)
T ss_dssp TCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCCCCCEECSSSHHHH-HHHHHTTTS---TTCEEEECSSTTT
T ss_pred cccccccccccccccccccccccccccchhhhhhHHHHcCCCeeeccccchHHH-HHHHHhcCC---CCeEEEEecccCC
Confidence 57888888886543222 244443222 2347888999999
Q ss_pred CCCCC-CCC-----------------------------------------------------------------------
Q psy1089 306 GLNLT-AAD----------------------------------------------------------------------- 313 (404)
Q Consensus 306 GlnL~-~a~----------------------------------------------------------------------- 313 (404)
|.|+. +.+
T Consensus 580 GTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~G 659 (997)
T 2ipc_A 580 GTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALG 659 (997)
T ss_dssp TSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CcCeecCCCHHHHHHHHHHhhcccccccccccccccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcC
Confidence 99975 322
Q ss_pred --EEEEecCCCCchhHHHHHHhhhccCCCCcEEEE
Q psy1089 314 --TCILYDSDWNPQVDIQAEARCHRIGQTKPVCIY 346 (404)
Q Consensus 314 --~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy 346 (404)
|||--+.+-+...+.|--||++|.|.......|
T Consensus 660 GLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~ 694 (997)
T 2ipc_A 660 GLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFY 694 (997)
T ss_dssp CCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEE
T ss_pred CeEEEeccCCchHHHHHHHhcccccCCCCCCeEEE
Confidence 899999999999999999999999987755444
No 73
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=96.88 E-value=0.0034 Score=64.68 Aligned_cols=109 Identities=11% Similarity=0.107 Sum_probs=67.4
Q ss_pred HHHHHHHHHhh-hCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEE-eecccccc
Q psy1089 228 IVLNQLLHKLK-QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFL-LSTRAGGQ 305 (404)
Q Consensus 228 ~~L~~ll~~l~-~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL-is~~a~g~ 305 (404)
..+.+.|..+. ..+.++|||+.+...++.+...+.. .+ +.+.|.. .+|.++++.|+.+. .+++ +.+....+
T Consensus 370 ~~~~~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~--~il~~V~~~~~~E 442 (540)
T 2vl7_A 370 PIYSILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK--YLVMLVMRAKESE 442 (540)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC--CEEEEEC------
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC--eEEEEEecCceec
Confidence 34555555543 3567999999999999999888864 23 3445543 35889999998853 3443 36789999
Q ss_pred CCCCCC----CCEEEEecCCCCch------------------------------hHHHHHHhhhccCCCCcE
Q psy1089 306 GLNLTA----ADTCILYDSDWNPQ------------------------------VDIQAEARCHRIGQTKPV 343 (404)
Q Consensus 306 GlnL~~----a~~VI~~d~~wnp~------------------------------~~~Qa~gR~~R~Gq~~~V 343 (404)
|+|+++ +..||++..|+.+. ...|++||+-|-.....+
T Consensus 443 GiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~ 514 (540)
T 2vl7_A 443 GVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVK 514 (540)
T ss_dssp ---------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCE
T ss_pred ceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEE
Confidence 999996 78999999886544 124899999887655544
No 74
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=93.88 E-value=0.26 Score=51.52 Aligned_cols=114 Identities=13% Similarity=0.179 Sum_probs=69.6
Q ss_pred HHHHHHHHHhh-hCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEee-cccccc
Q psy1089 228 IVLNQLLHKLK-QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLS-TRAGGQ 305 (404)
Q Consensus 228 ~~L~~ll~~l~-~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis-~~a~g~ 305 (404)
..+.+.|..+. ..+..++||..+-..++.+...|+ .+... ..-+++..+|..++++|. +. ..|++.. .....+
T Consensus 434 ~~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~--~~~~~-~~q~~~~~~~~~ll~~f~-~~-~~vL~~v~~gsf~E 508 (620)
T 4a15_A 434 DRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVS--FEHMK-EYRGIDQKELYSMLKKFR-RD-HGTIFAVSGGRLSE 508 (620)
T ss_dssp HHHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCC--SCCEE-CCTTCCSHHHHHHHHHHT-TS-CCEEEEETTSCC--
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHH--hcchh-ccCCCChhHHHHHHHHhc-cC-CcEEEEEecCceec
Confidence 33444444443 345678999988888888887776 23322 333444567999999999 43 3445444 358899
Q ss_pred CCCCC--CCCEEEEecCCCCch-------------------h----------HHHHHHhhhccCCCCcEEEE
Q psy1089 306 GLNLT--AADTCILYDSDWNPQ-------------------V----------DIQAEARCHRIGQTKPVCIY 346 (404)
Q Consensus 306 GlnL~--~a~~VI~~d~~wnp~-------------------~----------~~Qa~gR~~R~Gq~~~V~Vy 346 (404)
|+|++ .+..||+...|+-+. . ..|++||+-|--....|.+.
T Consensus 509 GiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~l 580 (620)
T 4a15_A 509 GINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVI 580 (620)
T ss_dssp ------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEE
T ss_pred cccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEE
Confidence 99997 578999988776531 1 14999999997665554443
No 75
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=91.18 E-value=1.1 Score=48.14 Aligned_cols=98 Identities=11% Similarity=0.037 Sum_probs=72.5
Q ss_pred ccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHH----HhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEE
Q psy1089 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELC----VLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVF 296 (404)
Q Consensus 221 ~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L----~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vl 296 (404)
...|||..+..-.+......|.+++|.+.......-+...+ ...|+++..++|+++..+|...+....++. +.++
T Consensus 397 ~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~-~~Iv 475 (780)
T 1gm5_A 397 DVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQ-IDVV 475 (780)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSC-CCEE
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCC-CCEE
Confidence 35699988766555555556889999999877655554444 445899999999999999999999998874 6777
Q ss_pred EeeccccccCCCCCCCCEEEEec
Q psy1089 297 LLSTRAGGQGLNLTAADTCILYD 319 (404)
Q Consensus 297 Lis~~a~g~GlnL~~a~~VI~~d 319 (404)
+.+.......+.+.....||+=+
T Consensus 476 VgT~~ll~~~~~~~~l~lVVIDE 498 (780)
T 1gm5_A 476 IGTHALIQEDVHFKNLGLVIIDE 498 (780)
T ss_dssp EECTTHHHHCCCCSCCCEEEEES
T ss_pred EECHHHHhhhhhccCCceEEecc
Confidence 77776665566777777666533
No 76
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=90.88 E-value=1.2 Score=43.28 Aligned_cols=96 Identities=16% Similarity=0.180 Sum_probs=71.5
Q ss_pred ccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHh---cCCceEeccCCcCHHHHHHHHHHHhCCCCceEEE
Q psy1089 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVL---ENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFL 297 (404)
Q Consensus 221 ~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~---~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL 297 (404)
...|||-.+..-.+......+.++||.+.....+.-+...+.. .|+.+..++|+.+..++......+..++ +.+++
T Consensus 44 pTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~-~~Iiv 122 (414)
T 3oiy_A 44 PTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDD-YHILV 122 (414)
T ss_dssp CSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTC-CSEEE
T ss_pred CCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCC-CCEEE
Confidence 3469998855544444456788999999999888888888876 5889999999999988888888888763 56788
Q ss_pred eeccccccC---CCCCCCCEEEE
Q psy1089 298 LSTRAGGQG---LNLTAADTCIL 317 (404)
Q Consensus 298 is~~a~g~G---lnL~~a~~VI~ 317 (404)
.++.....- +++...+.||+
T Consensus 123 ~Tp~~l~~~l~~~~~~~~~~iVi 145 (414)
T 3oiy_A 123 FSTQFVSKNREKLSQKRFDFVFV 145 (414)
T ss_dssp EEHHHHHHCHHHHTTCCCSEEEE
T ss_pred ECHHHHHHHHHHhccccccEEEE
Confidence 877655222 34456666655
No 77
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=83.86 E-value=3.2 Score=46.26 Aligned_cols=96 Identities=16% Similarity=0.180 Sum_probs=74.1
Q ss_pred ccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHh---cCCceEeccCCcCHHHHHHHHHHHhCCCCceEEE
Q psy1089 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVL---ENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFL 297 (404)
Q Consensus 221 ~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~---~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL 297 (404)
...|||-.+..-.+......+.++||.+.....+.-+...+.. .|+.+..++|+.+..+|......+..+. +.+++
T Consensus 101 pTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~-~~IlV 179 (1104)
T 4ddu_A 101 PTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDD-YHILV 179 (1104)
T ss_dssp STTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSC-CSEEE
T ss_pred CCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCC-CCEEE
Confidence 4569999877666666667788999999999998888888876 5788999999999988888888888873 67788
Q ss_pred eeccccccC---CCCCCCCEEEE
Q psy1089 298 LSTRAGGQG---LNLTAADTCIL 317 (404)
Q Consensus 298 is~~a~g~G---lnL~~a~~VI~ 317 (404)
.++...-.- +++.....||+
T Consensus 180 ~Tp~rL~~~l~~l~~~~l~~lVi 202 (1104)
T 4ddu_A 180 FSTQFVSKNREKLSQKRFDFVFV 202 (1104)
T ss_dssp EEHHHHHHSHHHHHTSCCSEEEE
T ss_pred ECHHHHHHHHHhhcccCcCEEEE
Confidence 777654222 33456666665
No 78
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=80.54 E-value=7.3 Score=43.56 Aligned_cols=96 Identities=6% Similarity=-0.041 Sum_probs=71.6
Q ss_pred ccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHH----hcCCceEeccCCcCHHHHHHHHHHHhCCCCceEE
Q psy1089 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCV----LENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVF 296 (404)
Q Consensus 221 ~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~----~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vl 296 (404)
...+||.......+-.....+.+++|.+.....+.-+...+. ..++.+..++|..+..++...+.....+. +.++
T Consensus 632 ~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~-~dIv 710 (1151)
T 2eyq_A 632 DVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGK-IDIL 710 (1151)
T ss_dssp CCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTC-CSEE
T ss_pred CCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCC-CCEE
Confidence 357999987665554455678899999998876665555543 44688899999999999999999988874 6778
Q ss_pred EeeccccccCCCCCCCCEEEE
Q psy1089 297 LLSTRAGGQGLNLTAADTCIL 317 (404)
Q Consensus 297 Lis~~a~g~GlnL~~a~~VI~ 317 (404)
+.+.......+.+.....||+
T Consensus 711 V~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 711 IGTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp EECTHHHHSCCCCSSEEEEEE
T ss_pred EECHHHHhCCccccccceEEE
Confidence 888777766677766665555
No 79
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=76.70 E-value=23 Score=31.25 Aligned_cols=92 Identities=11% Similarity=0.094 Sum_probs=60.4
Q ss_pred ccCCcHHHH-HHHHHHHhh-------hCCCeEEEEecchHHHHHHHHHH----HhcCCceEeccCCcCHHHHHHHHHHHh
Q psy1089 221 VSSSGKMIV-LNQLLHKLK-------QTNHKTLVFSTMVKVLNFIEELC----VLENYNYYRLHGSIRNEERNDAVQQFN 288 (404)
Q Consensus 221 ~~~S~Kl~~-L~~ll~~l~-------~~~~KvlIFs~~~~~l~~L~~~L----~~~gi~~~~i~G~~~~~~R~~~i~~F~ 288 (404)
...|||-.. +..++..+. ..+.++||.+.....+.-+.+.+ ...++.+..++|+.+.......+.
T Consensus 74 pTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--- 150 (242)
T 3fe2_A 74 QTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE--- 150 (242)
T ss_dssp CTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH---
T ss_pred CCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc---
Confidence 346999865 555555543 24678999999887766554444 456899999999998776655543
Q ss_pred CCCCceEEEeeccccc-----cCCCCCCCCEEEE
Q psy1089 289 GSTEWGVFLLSTRAGG-----QGLNLTAADTCIL 317 (404)
Q Consensus 289 ~~~~~~vlLis~~a~g-----~GlnL~~a~~VI~ 317 (404)
.+ +.+++.++.... ..+++.....+|+
T Consensus 151 ~~--~~I~v~Tp~~l~~~l~~~~~~~~~~~~lVi 182 (242)
T 3fe2_A 151 RG--VEICIATPGRLIDFLECGKTNLRRTTYLVL 182 (242)
T ss_dssp HC--CSEEEECHHHHHHHHHHTSCCCTTCCEEEE
T ss_pred CC--CCEEEECHHHHHHHHHcCCCCcccccEEEE
Confidence 23 567777764432 2346677777665
No 80
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=76.17 E-value=27 Score=30.06 Aligned_cols=93 Identities=16% Similarity=0.110 Sum_probs=59.4
Q ss_pred cCCcHHHHHHHHH-HHhhh--CCCeEEEEecchHHHHHHHHHHHhc-----CCceEeccCCcCHHHHHHHHHHHhCCCCc
Q psy1089 222 SSSGKMIVLNQLL-HKLKQ--TNHKTLVFSTMVKVLNFIEELCVLE-----NYNYYRLHGSIRNEERNDAVQQFNGSTEW 293 (404)
Q Consensus 222 ~~S~Kl~~L~~ll-~~l~~--~~~KvlIFs~~~~~l~~L~~~L~~~-----gi~~~~i~G~~~~~~R~~~i~~F~~~~~~ 293 (404)
..+||-....-.+ ..+.. .+.++||.+.......-+.+.++.. ++.+..++|+.+..+....+. .+ ..
T Consensus 60 TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~---~~-~~ 135 (220)
T 1t6n_A 60 SGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK---KN-CP 135 (220)
T ss_dssp TTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHH---HS-CC
T ss_pred CCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHh---cC-CC
Confidence 4589986544333 33322 2348999999988877776666543 788999999998766554443 22 24
Q ss_pred eEEEeecccc-----ccCCCCCCCCEEEEe
Q psy1089 294 GVFLLSTRAG-----GQGLNLTAADTCILY 318 (404)
Q Consensus 294 ~vlLis~~a~-----g~GlnL~~a~~VI~~ 318 (404)
.+++.++... ...+++...+.+|+=
T Consensus 136 ~i~v~T~~~l~~~~~~~~~~~~~~~~lViD 165 (220)
T 1t6n_A 136 HIVVGTPGRILALARNKSLNLKHIKHFILD 165 (220)
T ss_dssp SEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred CEEEeCHHHHHHHHHhCCCCcccCCEEEEc
Confidence 6677776543 234566777777663
No 81
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=74.26 E-value=18 Score=31.65 Aligned_cols=91 Identities=15% Similarity=0.080 Sum_probs=60.5
Q ss_pred ccCCcHHHH-HHHHHHHhhh--CCCeEEEEecchHHHHHHHHHHHhc-----CCceEeccCCcCHHHHHHHHHHHhCCCC
Q psy1089 221 VSSSGKMIV-LNQLLHKLKQ--TNHKTLVFSTMVKVLNFIEELCVLE-----NYNYYRLHGSIRNEERNDAVQQFNGSTE 292 (404)
Q Consensus 221 ~~~S~Kl~~-L~~ll~~l~~--~~~KvlIFs~~~~~l~~L~~~L~~~-----gi~~~~i~G~~~~~~R~~~i~~F~~~~~ 292 (404)
...|||-.. +..++..+.. .+.++||.+.....+.-+.+.+... ++.+..++|+.+..++...+ . +
T Consensus 69 ~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~---~ 142 (230)
T 2oxc_A 69 KSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL---K---K 142 (230)
T ss_dssp CTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT---T---S
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc---c---C
Confidence 345899876 5566665533 4578999999988877777766543 67888899998876654433 2 3
Q ss_pred ceEEEeecccc-----ccCCCCCCCCEEEE
Q psy1089 293 WGVFLLSTRAG-----GQGLNLTAADTCIL 317 (404)
Q Consensus 293 ~~vlLis~~a~-----g~GlnL~~a~~VI~ 317 (404)
+.+++.++... ...+++...+.+|+
T Consensus 143 ~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 143 CHIAVGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp CSEEEECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred CCEEEECHHHHHHHHhcCCcccccCCEEEe
Confidence 56777776643 22455666666655
No 82
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=73.97 E-value=30 Score=30.82 Aligned_cols=92 Identities=18% Similarity=0.139 Sum_probs=59.0
Q ss_pred ccCCcHHHH-HHHHHHHhhhC--CCeEEEEecchHHHHHHHHHHH----hcCCceEeccCCcCHHHHHHHHHHHhCCCCc
Q psy1089 221 VSSSGKMIV-LNQLLHKLKQT--NHKTLVFSTMVKVLNFIEELCV----LENYNYYRLHGSIRNEERNDAVQQFNGSTEW 293 (404)
Q Consensus 221 ~~~S~Kl~~-L~~ll~~l~~~--~~KvlIFs~~~~~l~~L~~~L~----~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~ 293 (404)
...|||-.. +.-++..+... +.++||.+.......-+.+.++ ..++.+..+.|+.+..+....+ .. ++
T Consensus 88 ~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~--~~ 162 (249)
T 3ber_A 88 ETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL---AK--KP 162 (249)
T ss_dssp CTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH---HT--CC
T ss_pred CCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh---cC--CC
Confidence 346899876 44455444433 4579999998877666665554 4488999999998875544333 22 35
Q ss_pred eEEEeecccc------ccCCCCCCCCEEEE
Q psy1089 294 GVFLLSTRAG------GQGLNLTAADTCIL 317 (404)
Q Consensus 294 ~vlLis~~a~------g~GlnL~~a~~VI~ 317 (404)
.+++.++... ..++++...+.+|+
T Consensus 163 ~I~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 163 HIIIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp SEEEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred CEEEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 6777776543 23566777777666
No 83
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=73.33 E-value=24 Score=35.68 Aligned_cols=89 Identities=10% Similarity=0.115 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhh-hCCCeEEEEecchHHHHHHHHHHHhcCCceEeccC-CcCHHHHHHHHHHHhCCCCceEEEee-cccc
Q psy1089 227 MIVLNQLLHKLK-QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHG-SIRNEERNDAVQQFNGSTEWGVFLLS-TRAG 303 (404)
Q Consensus 227 l~~L~~ll~~l~-~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G-~~~~~~R~~~i~~F~~~~~~~vlLis-~~a~ 303 (404)
...+.+.+..+. ..+..+|||..+-..++.+.. ..+.++. +.| +.+ +...++.|+...+ .|++.. ....
T Consensus 378 ~~~l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~---~~~~~v~-~q~~~~~---~~~~~~~~~~~~~-~vl~~v~gg~~ 449 (551)
T 3crv_A 378 WKRYADYLLKIYFQAKANVLVVFPSYEIMDRVMS---RISLPKY-VESEDSS---VEDLYSAISANNK-VLIGSVGKGKL 449 (551)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEEESCHHHHHHHHT---TCCSSEE-ECCSSCC---HHHHHHHTTSSSS-CEEEEESSCCS
T ss_pred HHHHHHHHHHHHHhCCCCEEEEecCHHHHHHHHH---hcCCcEE-EcCCCCC---HHHHHHHHHhcCC-eEEEEEeccee
Confidence 345555555543 356689999988888887775 2344433 333 334 4567888864332 444444 3689
Q ss_pred ccCCCCC-----CCCEEEEecCCCC
Q psy1089 304 GQGLNLT-----AADTCILYDSDWN 323 (404)
Q Consensus 304 g~GlnL~-----~a~~VI~~d~~wn 323 (404)
.+|+|++ .+..||+...|+-
T Consensus 450 ~EGiD~~d~~g~~l~~viI~~lPfp 474 (551)
T 3crv_A 450 AEGIELRNNDRSLISDVVIVGIPYP 474 (551)
T ss_dssp CCSSCCEETTEESEEEEEEESCCCC
T ss_pred cccccccccCCcceeEEEEEcCCCC
Confidence 9999999 4788998887764
No 84
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=72.64 E-value=13 Score=41.15 Aligned_cols=94 Identities=14% Similarity=0.089 Sum_probs=67.6
Q ss_pred ccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHH----hcCC----ceEeccCCcCHHHHHHHHHHHhCCCC
Q psy1089 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCV----LENY----NYYRLHGSIRNEERNDAVQQFNGSTE 292 (404)
Q Consensus 221 ~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~----~~gi----~~~~i~G~~~~~~R~~~i~~F~~~~~ 292 (404)
...|||-.++..++..+...+.++||.+.....+.-+.+.++ ..++ .+..++|+.+..++....+.+..
T Consensus 79 pTGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--- 155 (1054)
T 1gku_B 79 PTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--- 155 (1054)
T ss_dssp CBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG---
T ss_pred CCCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC---
Confidence 345999987777777777778899999999887766655554 4467 78899999999888777777766
Q ss_pred ceEEEeeccccccCCC-CCCCCEEEE
Q psy1089 293 WGVFLLSTRAGGQGLN-LTAADTCIL 317 (404)
Q Consensus 293 ~~vlLis~~a~g~Gln-L~~a~~VI~ 317 (404)
+.++++++...-.-+. |...+.||+
T Consensus 156 ~~IlV~TP~~L~~~l~~L~~l~~lVi 181 (1054)
T 1gku_B 156 FKIVITTTQFLSKHYRELGHFDFIFV 181 (1054)
T ss_dssp CSEEEEEHHHHHHCSTTSCCCSEEEE
T ss_pred CCEEEEcHHHHHHHHHHhccCCEEEE
Confidence 5677777765443333 445555554
No 85
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=72.49 E-value=21 Score=34.26 Aligned_cols=90 Identities=16% Similarity=0.132 Sum_probs=61.7
Q ss_pred cCCcHHHHHHHHHHHhh-hCCCeEEEEecchHHHHHHHHHHHhc-CC---ceEeccCCcCHHHHHHHHHHHhCCCCceEE
Q psy1089 222 SSSGKMIVLNQLLHKLK-QTNHKTLVFSTMVKVLNFIEELCVLE-NY---NYYRLHGSIRNEERNDAVQQFNGSTEWGVF 296 (404)
Q Consensus 222 ~~S~Kl~~L~~ll~~l~-~~~~KvlIFs~~~~~l~~L~~~L~~~-gi---~~~~i~G~~~~~~R~~~i~~F~~~~~~~vl 296 (404)
..+||-......+.... ..+.++||.+.....+.-+.+.+... +. .+..++|+.+..++..... ...|+
T Consensus 32 tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~------~~~iv 105 (494)
T 1wp9_A 32 TGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA------RAKVI 105 (494)
T ss_dssp TTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH------HCSEE
T ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc------CCCEE
Confidence 35899987777665543 46789999999888777776666543 65 8899999998876654432 14567
Q ss_pred Eeecccccc-----CCCCCCCCEEEE
Q psy1089 297 LLSTRAGGQ-----GLNLTAADTCIL 317 (404)
Q Consensus 297 Lis~~a~g~-----GlnL~~a~~VI~ 317 (404)
+++...... .+.+...+.||+
T Consensus 106 v~T~~~l~~~~~~~~~~~~~~~~vIi 131 (494)
T 1wp9_A 106 VATPQTIENDLLAGRISLEDVSLIVF 131 (494)
T ss_dssp EECHHHHHHHHHTTSCCTTSCSEEEE
T ss_pred EecHHHHHHHHhcCCcchhhceEEEE
Confidence 777665432 345566666665
No 86
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=72.40 E-value=11 Score=29.73 Aligned_cols=47 Identities=17% Similarity=0.200 Sum_probs=37.5
Q ss_pred EEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCC
Q psy1089 244 TLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGS 290 (404)
Q Consensus 244 vlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~ 290 (404)
++||+.-+..+..|...++..|+.++.+++......|...+..|...
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekq 51 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQ 51 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTT
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHc
Confidence 56788888888777777888888888888888888888888888764
No 87
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=69.34 E-value=30 Score=30.20 Aligned_cols=90 Identities=13% Similarity=0.146 Sum_probs=55.1
Q ss_pred cCCcHHHHH-HHHHHHhh------hCCCeEEEEecchHHHHHHHHHHHh----cCCceEeccCCcCHHHHHHHHHHHhCC
Q psy1089 222 SSSGKMIVL-NQLLHKLK------QTNHKTLVFSTMVKVLNFIEELCVL----ENYNYYRLHGSIRNEERNDAVQQFNGS 290 (404)
Q Consensus 222 ~~S~Kl~~L-~~ll~~l~------~~~~KvlIFs~~~~~l~~L~~~L~~----~gi~~~~i~G~~~~~~R~~~i~~F~~~ 290 (404)
..|||-... .-++..+. ..+.++||.+.....+.-+.+.+.. .++.+..++|+.+.......+ .
T Consensus 71 TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~-- 145 (236)
T 2pl3_A 71 TGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI---N-- 145 (236)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH---T--
T ss_pred CCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC---C--
Confidence 458998753 33444332 3467899999988877766666654 357888889887765443333 2
Q ss_pred CCceEEEeeccccc------cCCCCCCCCEEEE
Q psy1089 291 TEWGVFLLSTRAGG------QGLNLTAADTCIL 317 (404)
Q Consensus 291 ~~~~vlLis~~a~g------~GlnL~~a~~VI~ 317 (404)
++.+++.++.... ..+++...+.+|+
T Consensus 146 -~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 177 (236)
T 2pl3_A 146 -NINILVCTPGRLLQHMDETVSFHATDLQMLVL 177 (236)
T ss_dssp -TCSEEEECHHHHHHHHHHCSSCCCTTCCEEEE
T ss_pred -CCCEEEECHHHHHHHHHhcCCcccccccEEEE
Confidence 3567777765432 2355666666665
No 88
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=67.82 E-value=23 Score=30.79 Aligned_cols=92 Identities=12% Similarity=0.191 Sum_probs=55.6
Q ss_pred ccCCcHHHH-HHHHHHHhh--------hCCCeEEEEecchHHHHHHHHHHHh---cCCceEeccCCcCHHHHHHHHHHHh
Q psy1089 221 VSSSGKMIV-LNQLLHKLK--------QTNHKTLVFSTMVKVLNFIEELCVL---ENYNYYRLHGSIRNEERNDAVQQFN 288 (404)
Q Consensus 221 ~~~S~Kl~~-L~~ll~~l~--------~~~~KvlIFs~~~~~l~~L~~~L~~---~gi~~~~i~G~~~~~~R~~~i~~F~ 288 (404)
...|||-.. +..++..+. ..+.++||.+.......-+.+.+.. .++.+..++|+.+...+... +.
T Consensus 65 pTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 141 (228)
T 3iuy_A 65 QTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS 141 (228)
T ss_dssp CTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH
T ss_pred CCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc
Confidence 346899854 444444432 2567899999998888877777765 47788888888776544333 33
Q ss_pred CCCCceEEEeeccccc-----cCCCCCCCCEEEE
Q psy1089 289 GSTEWGVFLLSTRAGG-----QGLNLTAADTCIL 317 (404)
Q Consensus 289 ~~~~~~vlLis~~a~g-----~GlnL~~a~~VI~ 317 (404)
.+ +.+++.++.... ..+++...+.||+
T Consensus 142 ~~--~~iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 173 (228)
T 3iuy_A 142 KG--VDIIIATPGRLNDLQMNNSVNLRSITYLVI 173 (228)
T ss_dssp SC--CSEEEECHHHHHHHHHTTCCCCTTCCEEEE
T ss_pred CC--CCEEEECHHHHHHHHHcCCcCcccceEEEE
Confidence 33 567777765432 3456677776665
No 89
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=65.14 E-value=49 Score=30.94 Aligned_cols=92 Identities=17% Similarity=0.138 Sum_probs=59.8
Q ss_pred cCCcHHHHHH-HHHHHhhh--CCCeEEEEecchHHHHHHHHHHHhc-----CCceEeccCCcCHHHHHHHHHHHhCCCCc
Q psy1089 222 SSSGKMIVLN-QLLHKLKQ--TNHKTLVFSTMVKVLNFIEELCVLE-----NYNYYRLHGSIRNEERNDAVQQFNGSTEW 293 (404)
Q Consensus 222 ~~S~Kl~~L~-~ll~~l~~--~~~KvlIFs~~~~~l~~L~~~L~~~-----gi~~~~i~G~~~~~~R~~~i~~F~~~~~~ 293 (404)
..+||-.... -++..+.. .+.++||.+.....+.-+.+.+... ++.+..++|+.+..+....+.. + ..
T Consensus 54 TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~-~~ 129 (391)
T 1xti_A 54 SGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK---N-CP 129 (391)
T ss_dssp SCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHH---S-CC
T ss_pred CCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhc---C-CC
Confidence 4589986643 44443322 3568999999988877776666543 7889999999987666554432 2 24
Q ss_pred eEEEeeccccc-----cCCCCCCCCEEEE
Q psy1089 294 GVFLLSTRAGG-----QGLNLTAADTCIL 317 (404)
Q Consensus 294 ~vlLis~~a~g-----~GlnL~~a~~VI~ 317 (404)
.+++.++.... ..+++...+.||+
T Consensus 130 ~iiv~T~~~l~~~~~~~~~~~~~~~~vVi 158 (391)
T 1xti_A 130 HIVVGTPGRILALARNKSLNLKHIKHFIL 158 (391)
T ss_dssp SEEEECHHHHHHHHHTTSSCCTTCSEEEE
T ss_pred CEEEECHHHHHHHHHcCCccccccCEEEE
Confidence 56777765432 3355667776665
No 90
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=64.61 E-value=11 Score=29.72 Aligned_cols=51 Identities=18% Similarity=0.166 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhhhCC-CeEEEEec-chHHHHHHHHHHHhcCCceEeccCCcCH
Q psy1089 226 KMIVLNQLLHKLKQTN-HKTLVFST-MVKVLNFIEELCVLENYNYYRLHGSIRN 277 (404)
Q Consensus 226 Kl~~L~~ll~~l~~~~-~KvlIFs~-~~~~l~~L~~~L~~~gi~~~~i~G~~~~ 277 (404)
++..+...+..+. .+ .++||+|. .-.........|+..|+++..++|+...
T Consensus 74 ~~~~~~~~~~~~~-~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 74 KLKDIYLQAAELA-LNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp GHHHHHHHHHHHH-TTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred cHHHHHHHHHHhc-cCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 4444555554443 44 78999994 6555667788889999988889998753
No 91
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=63.98 E-value=41 Score=28.36 Aligned_cols=91 Identities=11% Similarity=0.158 Sum_probs=58.5
Q ss_pred cCCcHHHH-HHHHHHHhh-----hCCCeEEEEecchHHHHHHHHHHHhc--CCceEeccCCcCHHHHHHHHHHHhCCCCc
Q psy1089 222 SSSGKMIV-LNQLLHKLK-----QTNHKTLVFSTMVKVLNFIEELCVLE--NYNYYRLHGSIRNEERNDAVQQFNGSTEW 293 (404)
Q Consensus 222 ~~S~Kl~~-L~~ll~~l~-----~~~~KvlIFs~~~~~l~~L~~~L~~~--gi~~~~i~G~~~~~~R~~~i~~F~~~~~~ 293 (404)
..|||... +..++..+. ..+.++||.+.......-+.+.+... ++.+..++|+.+.......+. .+ +
T Consensus 47 TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~ 121 (207)
T 2gxq_A 47 TGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL---RG--A 121 (207)
T ss_dssp TTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH---HC--C
T ss_pred CCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh---CC--C
Confidence 45899976 455555543 24678999999988877777777644 467788888877654443332 22 5
Q ss_pred eEEEeeccccc-----cCCCCCCCCEEEE
Q psy1089 294 GVFLLSTRAGG-----QGLNLTAADTCIL 317 (404)
Q Consensus 294 ~vlLis~~a~g-----~GlnL~~a~~VI~ 317 (404)
.+++.++...- ..+++...+.||+
T Consensus 122 ~i~v~T~~~l~~~~~~~~~~~~~~~~iVi 150 (207)
T 2gxq_A 122 DAVVATPGRALDYLRQGVLDLSRVEVAVL 150 (207)
T ss_dssp SEEEECHHHHHHHHHHTSSCCTTCSEEEE
T ss_pred CEEEECHHHHHHHHHcCCcchhhceEEEE
Confidence 56777664321 2345667776666
No 92
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=62.67 E-value=70 Score=28.54 Aligned_cols=91 Identities=10% Similarity=0.137 Sum_probs=58.2
Q ss_pred cCCcHHHH-HHHHHHHhhh------CCCeEEEEecchHHHHHHHHHHH----hcCCceEeccCCcCHHHHHHHHHHHhCC
Q psy1089 222 SSSGKMIV-LNQLLHKLKQ------TNHKTLVFSTMVKVLNFIEELCV----LENYNYYRLHGSIRNEERNDAVQQFNGS 290 (404)
Q Consensus 222 ~~S~Kl~~-L~~ll~~l~~------~~~KvlIFs~~~~~l~~L~~~L~----~~gi~~~~i~G~~~~~~R~~~i~~F~~~ 290 (404)
..|||-.. +..++..+.. .+.++||.+.....+.-+.+.++ ..++.+..+.|+.+.......+ ..+
T Consensus 100 TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~ 176 (262)
T 3ly5_A 100 TGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL---GNG 176 (262)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHH---HHC
T ss_pred CCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHh---cCC
Confidence 45899865 4455554432 57789999998877666655554 4567788889988865544433 333
Q ss_pred CCceEEEeeccc------cccCCCCCCCCEEEE
Q psy1089 291 TEWGVFLLSTRA------GGQGLNLTAADTCIL 317 (404)
Q Consensus 291 ~~~~vlLis~~a------~g~GlnL~~a~~VI~ 317 (404)
+.+++.++.. .+.++.+.....||+
T Consensus 177 --~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lVi 207 (262)
T 3ly5_A 177 --INIIVATPGRLLDHMQNTPGFMYKNLQCLVI 207 (262)
T ss_dssp --CSEEEECHHHHHHHHHHCTTCCCTTCCEEEE
T ss_pred --CCEEEEcHHHHHHHHHccCCcccccCCEEEE
Confidence 5566666432 223466777777665
No 93
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=60.85 E-value=24 Score=30.43 Aligned_cols=91 Identities=11% Similarity=0.105 Sum_probs=52.9
Q ss_pred ccCCcHHHH-HHHHHHHhhh--CCCeEEEEecchHHHHHHHHHHH----hcCCceEeccCCcCHHHHHHHHHHHhCCCCc
Q psy1089 221 VSSSGKMIV-LNQLLHKLKQ--TNHKTLVFSTMVKVLNFIEELCV----LENYNYYRLHGSIRNEERNDAVQQFNGSTEW 293 (404)
Q Consensus 221 ~~~S~Kl~~-L~~ll~~l~~--~~~KvlIFs~~~~~l~~L~~~L~----~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~ 293 (404)
...|||-.. +..++..+.. .+.++||.+.......-+.+.+. ..++.+..++|+.+..+.... +. .+
T Consensus 59 pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~---~~ 132 (224)
T 1qde_A 59 QSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR---DA 132 (224)
T ss_dssp CTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT---TC
T ss_pred CCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC---CC
Confidence 345899976 5666665533 45689999998887766666554 347888888998775443322 22 25
Q ss_pred eEEEeecccc-----ccCCCCCCCCEEEE
Q psy1089 294 GVFLLSTRAG-----GQGLNLTAADTCIL 317 (404)
Q Consensus 294 ~vlLis~~a~-----g~GlnL~~a~~VI~ 317 (404)
.+++.++... ...+++...+.||+
T Consensus 133 ~iiv~Tp~~l~~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 133 QIVVGTPGRVFDNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp SEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 6777776542 23455666666665
No 94
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=60.51 E-value=19 Score=35.80 Aligned_cols=92 Identities=17% Similarity=0.178 Sum_probs=54.0
Q ss_pred cCCcHHHHHHHHHHHhhhC-----CCeEEEEecchHHHHHHHHHHH----hcCCceEeccCCcCHHHHHHHHHHHhCCCC
Q psy1089 222 SSSGKMIVLNQLLHKLKQT-----NHKTLVFSTMVKVLNFIEELCV----LENYNYYRLHGSIRNEERNDAVQQFNGSTE 292 (404)
Q Consensus 222 ~~S~Kl~~L~~ll~~l~~~-----~~KvlIFs~~~~~l~~L~~~L~----~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~ 292 (404)
..|||.....-.+...... +.++||.+.....+.-+...+. ..++.+..++|+.+...+...+. .+
T Consensus 31 tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~-- 105 (556)
T 4a2p_A 31 TGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI---ED-- 105 (556)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH---HH--
T ss_pred CCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh---CC--
Confidence 4589987654444333222 6789999998777665555554 34899999999987655433222 12
Q ss_pred ceEEEeecccccc----C-C-CCCCCCEEEEe
Q psy1089 293 WGVFLLSTRAGGQ----G-L-NLTAADTCILY 318 (404)
Q Consensus 293 ~~vlLis~~a~g~----G-l-nL~~a~~VI~~ 318 (404)
..++++++..... | + .+...+.||+=
T Consensus 106 ~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViD 137 (556)
T 4a2p_A 106 SDIIVVTPQILVNSFEDGTLTSLSIFTLMIFD 137 (556)
T ss_dssp CSEEEECHHHHHHHHHSSSCCCSTTCSEEEEE
T ss_pred CCEEEECHHHHHHHHHhCcccccccCCEEEEE
Confidence 4567777665431 1 3 45666766663
No 95
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=58.66 E-value=33 Score=35.21 Aligned_cols=80 Identities=14% Similarity=0.097 Sum_probs=59.6
Q ss_pred ccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhC-CCCceEEEee
Q psy1089 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-STEWGVFLLS 299 (404)
Q Consensus 221 ~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~-~~~~~vlLis 299 (404)
...+||-... ++..+. .+.++||.+.....+.-....|...|+++..++|+.+..++..+...... .....+++++
T Consensus 67 pTGsGKTl~~--~lpal~-~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~T 143 (591)
T 2v1x_A 67 PTGGGKSLCY--QLPALC-SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVT 143 (591)
T ss_dssp CTTSCTTHHH--HHHHHT-SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEEC
T ss_pred CCCChHHHHH--HHHHHH-cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEC
Confidence 3458887532 222233 35689999999998888888888889999999999999998888888743 2247788888
Q ss_pred cccc
Q psy1089 300 TRAG 303 (404)
Q Consensus 300 ~~a~ 303 (404)
+...
T Consensus 144 pe~L 147 (591)
T 2v1x_A 144 PEKI 147 (591)
T ss_dssp HHHH
T ss_pred hhHh
Confidence 7643
No 96
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=58.21 E-value=45 Score=25.61 Aligned_cols=69 Identities=13% Similarity=0.149 Sum_probs=44.1
Q ss_pred HHHHHHhhhCCCeEEEEec------chHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecc
Q psy1089 231 NQLLHKLKQTNHKTLVFST------MVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTR 301 (404)
Q Consensus 231 ~~ll~~l~~~~~KvlIFs~------~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~ 301 (404)
.+.+..+. ...+|+||+. .-.........|...|++|..++=......+..+.. +.....+.++++...
T Consensus 8 ~~~v~~~i-~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~-~~g~~tvP~ifi~g~ 82 (109)
T 3ipz_A 8 KDTLEKLV-NSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKE-YSNWPTFPQLYIGGE 82 (109)
T ss_dssp HHHHHHHH-TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHH-HHTCSSSCEEEETTE
T ss_pred HHHHHHHH-ccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHH-HHCCCCCCeEEECCE
Confidence 34444444 3568999987 466788889999999999887764445544544443 333334566666543
No 97
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=58.05 E-value=46 Score=25.78 Aligned_cols=68 Identities=13% Similarity=0.126 Sum_probs=43.4
Q ss_pred HHHHHhhhCCCeEEEEec------chHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecc
Q psy1089 232 QLLHKLKQTNHKTLVFST------MVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTR 301 (404)
Q Consensus 232 ~ll~~l~~~~~KvlIFs~------~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~ 301 (404)
+.+..+. ...+|+||+. .-.........|...|++|..++=......+..+. .+.....++++++...
T Consensus 7 ~~v~~~i-~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~-~~~g~~tvP~ifi~g~ 80 (111)
T 3zyw_A 7 LRLKKLT-HAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLK-AYSSWPTYPQLYVSGE 80 (111)
T ss_dssp HHHHHHH-TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHH-HHHTCCSSCEEEETTE
T ss_pred HHHHHHH-hcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHH-HHHCCCCCCEEEECCE
Confidence 3344433 3569999985 45567788889999999998876555555555444 3433335666666543
No 98
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=57.01 E-value=14 Score=36.58 Aligned_cols=91 Identities=14% Similarity=0.194 Sum_probs=55.6
Q ss_pred cCCcHHHHHHHHHHHh-hhC----CCeEEEEecchHHHHHHHHHHH----hcCCceEeccCCcCHHHHHHHHHHHhCCCC
Q psy1089 222 SSSGKMIVLNQLLHKL-KQT----NHKTLVFSTMVKVLNFIEELCV----LENYNYYRLHGSIRNEERNDAVQQFNGSTE 292 (404)
Q Consensus 222 ~~S~Kl~~L~~ll~~l-~~~----~~KvlIFs~~~~~l~~L~~~L~----~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~ 292 (404)
..|||.....-.+... ... +.++||.+.....+.-+...+. ..++.+..++|+.+...+...+. .+
T Consensus 28 tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~-- 102 (555)
T 3tbk_A 28 TGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII---ED-- 102 (555)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH---HH--
T ss_pred CCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh---cC--
Confidence 4589987654444433 322 7789999998776665555544 44899999999986554432222 12
Q ss_pred ceEEEeeccccccC-----C-CCCCCCEEEE
Q psy1089 293 WGVFLLSTRAGGQG-----L-NLTAADTCIL 317 (404)
Q Consensus 293 ~~vlLis~~a~g~G-----l-nL~~a~~VI~ 317 (404)
..+++.++.....- + .+...+.||+
T Consensus 103 ~~i~v~T~~~l~~~~~~~~~~~~~~~~~vVi 133 (555)
T 3tbk_A 103 NDIIILTPQILVNNLNNGAIPSLSVFTLMIF 133 (555)
T ss_dssp CSEEEECHHHHHHHHHTSSSCCGGGCSEEEE
T ss_pred CCEEEECHHHHHHHHhcCcccccccCCEEEE
Confidence 45677776653321 2 4555666655
No 99
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=56.95 E-value=52 Score=24.80 Aligned_cols=66 Identities=14% Similarity=0.084 Sum_probs=42.7
Q ss_pred HHHHHhhhCCCeEEEEec------chHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEee
Q psy1089 232 QLLHKLKQTNHKTLVFST------MVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLS 299 (404)
Q Consensus 232 ~ll~~l~~~~~KvlIFs~------~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis 299 (404)
+.+..+.. ..+++||+. .-..+..+...|...+++|..++=......+......+.. ..++++++.
T Consensus 8 ~~~~~~i~-~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~-~~vP~v~i~ 79 (105)
T 2yan_A 8 ERLKVLTN-KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNW-PTYPQLYVK 79 (105)
T ss_dssp HHHHHHHT-SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTC-CSSCEEEET
T ss_pred HHHHHHhc-cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCC-CCCCeEEEC
Confidence 33444443 347999985 4456778888899899998888766666656655555543 345556554
No 100
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=56.87 E-value=34 Score=25.76 Aligned_cols=57 Identities=5% Similarity=-0.067 Sum_probs=39.6
Q ss_pred CeEEEEecch-HHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEe
Q psy1089 242 HKTLVFSTMV-KVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLL 298 (404)
Q Consensus 242 ~KvlIFs~~~-~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLi 298 (404)
.+|.||+... ..+.....+|...|++|..++=...++.++.....-.....++++++
T Consensus 4 a~I~vYs~~~Cp~C~~aK~~L~~~gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i 61 (92)
T 2lqo_A 4 AALTIYTTSWCGYCLRLKTALTANRIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKF 61 (92)
T ss_dssp SCEEEEECTTCSSHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEEE
T ss_pred CcEEEEcCCCCHhHHHHHHHHHhcCCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEE
Confidence 4688887643 34777888999999999999887777777666544322224566655
No 101
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=56.73 E-value=23 Score=37.58 Aligned_cols=92 Identities=16% Similarity=0.160 Sum_probs=54.1
Q ss_pred ccCCcHHHHHHHHHHHhhhC-----CCeEEEEecchHHHHHHHHHHH----hcCCceEeccCCcCHHHHHHHHHHHhCCC
Q psy1089 221 VSSSGKMIVLNQLLHKLKQT-----NHKTLVFSTMVKVLNFIEELCV----LENYNYYRLHGSIRNEERNDAVQQFNGST 291 (404)
Q Consensus 221 ~~~S~Kl~~L~~ll~~l~~~-----~~KvlIFs~~~~~l~~L~~~L~----~~gi~~~~i~G~~~~~~R~~~i~~F~~~~ 291 (404)
...|||.....-.+...... +.++||.+.....+.-+...++ ..++.+..++|+.+...+...+. .+
T Consensus 271 ~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~---~~- 346 (797)
T 4a2q_A 271 PTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI---ED- 346 (797)
T ss_dssp CTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH---HT-
T ss_pred CCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh---CC-
Confidence 34699987755555443332 7899999998877666555554 34999999999987655433322 22
Q ss_pred CceEEEeeccccccC-----C-CCCCCCEEEE
Q psy1089 292 EWGVFLLSTRAGGQG-----L-NLTAADTCIL 317 (404)
Q Consensus 292 ~~~vlLis~~a~g~G-----l-nL~~a~~VI~ 317 (404)
..|++.++.....- + .+...+.||+
T Consensus 347 -~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iVi 377 (797)
T 4a2q_A 347 -SDIIVVTPQILVNSFEDGTLTSLSIFTLMIF 377 (797)
T ss_dssp -CSEEEECHHHHHHHHHSSSCCCGGGCSEEEE
T ss_pred -CCEEEEchHHHHHHHHhccccccccCCEEEE
Confidence 56777776643321 2 4455566655
No 102
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=55.56 E-value=34 Score=34.38 Aligned_cols=78 Identities=12% Similarity=0.127 Sum_probs=60.0
Q ss_pred cCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecc
Q psy1089 222 SSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTR 301 (404)
Q Consensus 222 ~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~ 301 (404)
..+||-... ++..+. .+.++||.+.....+.-....|...|+++..++|+.+..++.........+. ..++++++.
T Consensus 49 TGsGKTl~~--~lp~l~-~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~-~~ilv~Tpe 124 (523)
T 1oyw_A 49 TGGGKSLCY--QIPALL-LNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ-IRLLYIAPE 124 (523)
T ss_dssp CHHHHHHHH--HHHHHH-SSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTC-CSEEEECHH
T ss_pred CCcHHHHHH--HHHHHH-hCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC-CCEEEECHH
Confidence 458887532 233332 3468999999999888888889999999999999999988888888887774 677888776
Q ss_pred cc
Q psy1089 302 AG 303 (404)
Q Consensus 302 a~ 303 (404)
..
T Consensus 125 ~l 126 (523)
T 1oyw_A 125 RL 126 (523)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 103
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=54.20 E-value=64 Score=24.50 Aligned_cols=94 Identities=10% Similarity=-0.044 Sum_probs=52.3
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhC---CCCceEEEeeccccccCCCCC--CCC
Q psy1089 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG---STEWGVFLLSTRAGGQGLNLT--AAD 313 (404)
Q Consensus 239 ~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~---~~~~~vlLis~~a~g~GlnL~--~a~ 313 (404)
..+..+..+......++.+ ....+..+.++-.++...-...+...+. .+.+.+++++......-.... +++
T Consensus 25 ~~~~~v~~~~~~~~a~~~l----~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~g~~ 100 (133)
T 3nhm_A 25 SGEFDCTTAADGASGLQQA----LAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQPVPD 100 (133)
T ss_dssp TTTSEEEEESSHHHHHHHH----HHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----TTSCCCS
T ss_pred hCCcEEEEECCHHHHHHHH----hcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhhcCCc
Confidence 3566666666555544433 4456778888766554444455555544 235677777754322112221 333
Q ss_pred EEEEecCCCCchhHHHHHHhhhccC
Q psy1089 314 TCILYDSDWNPQVDIQAEARCHRIG 338 (404)
Q Consensus 314 ~VI~~d~~wnp~~~~Qa~gR~~R~G 338 (404)
. ++.-|+++....+++.++-+.+
T Consensus 101 ~--~l~KP~~~~~l~~~i~~~l~~~ 123 (133)
T 3nhm_A 101 A--YLVKPVKPPVLIAQLHALLARA 123 (133)
T ss_dssp E--EEESSCCHHHHHHHHHHHHHHH
T ss_pred e--EEeccCCHHHHHHHHHHHHhhh
Confidence 3 4456888888888887776543
No 104
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=53.63 E-value=69 Score=25.17 Aligned_cols=68 Identities=7% Similarity=0.022 Sum_probs=42.8
Q ss_pred HHHHHhhhCCCeEEEEec------chHHHHHHHHHHHhcCCc---eEeccCCcCHHHHHHHHHHHhCCCCceEEEeecc
Q psy1089 232 QLLHKLKQTNHKTLVFST------MVKVLNFIEELCVLENYN---YYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTR 301 (404)
Q Consensus 232 ~ll~~l~~~~~KvlIFs~------~~~~l~~L~~~L~~~gi~---~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~ 301 (404)
+.++.+.. ..+|+||+. +-.........|...|++ |..++=....+.+..+. .+.....+.++++...
T Consensus 7 ~~v~~~i~-~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~-~~sg~~tvP~vfI~g~ 83 (121)
T 3gx8_A 7 KAIEDAIE-SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIK-EFSEWPTIPQLYVNKE 83 (121)
T ss_dssp HHHHHHHH-SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHH-HHHTCCSSCEEEETTE
T ss_pred HHHHHHhc-cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHH-HHhCCCCCCeEEECCE
Confidence 33444433 468999988 456688888899999998 76666555555555444 3333335666666543
No 105
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=53.34 E-value=63 Score=31.25 Aligned_cols=92 Identities=14% Similarity=0.099 Sum_probs=60.2
Q ss_pred ccCCcHHHH-HHHHHHHhhhC-------CCeEEEEecchHHHHHHHHHHHh----cCCceEeccCCcCHHHHHHHHHHHh
Q psy1089 221 VSSSGKMIV-LNQLLHKLKQT-------NHKTLVFSTMVKVLNFIEELCVL----ENYNYYRLHGSIRNEERNDAVQQFN 288 (404)
Q Consensus 221 ~~~S~Kl~~-L~~ll~~l~~~-------~~KvlIFs~~~~~l~~L~~~L~~----~gi~~~~i~G~~~~~~R~~~i~~F~ 288 (404)
-..|||-.+ +..++..+... +.++||.+.....+.-+.+.++. .++.+..++|+.+.......+ .
T Consensus 101 ~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~ 177 (434)
T 2db3_A 101 QTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI---T 177 (434)
T ss_dssp CTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHH---T
T ss_pred CCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHh---h
Confidence 346999874 55566655432 46899999998887777666653 467788889998876554433 2
Q ss_pred CCCCceEEEeeccccc-----cCCCCCCCCEEEE
Q psy1089 289 GSTEWGVFLLSTRAGG-----QGLNLTAADTCIL 317 (404)
Q Consensus 289 ~~~~~~vlLis~~a~g-----~GlnL~~a~~VI~ 317 (404)
. ++.+++.++...- ..+++...+++|+
T Consensus 178 ~--~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVl 209 (434)
T 2db3_A 178 R--GCHVVIATPGRLLDFVDRTFITFEDTRFVVL 209 (434)
T ss_dssp T--CCSEEEECHHHHHHHHHTTSCCCTTCCEEEE
T ss_pred c--CCCEEEEChHHHHHHHHhCCcccccCCeEEE
Confidence 3 3667777765431 2345667777766
No 106
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=51.47 E-value=14 Score=28.43 Aligned_cols=38 Identities=16% Similarity=0.106 Sum_probs=31.9
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcC
Q psy1089 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIR 276 (404)
Q Consensus 239 ~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~ 276 (404)
..+.++++||..-.........|+..|+++..+.|+..
T Consensus 53 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 53 ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 35678999999887778888899999998888999764
No 107
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=49.09 E-value=27 Score=28.05 Aligned_cols=34 Identities=6% Similarity=-0.034 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHh
Q psy1089 255 NFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN 288 (404)
Q Consensus 255 ~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~ 288 (404)
.....+|...|++|..++=+...+.|..+++...
T Consensus 20 ~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~~ 53 (121)
T 1u6t_A 20 QDVLGFLEANKIGFEEKDIAANEENRKWMRENVP 53 (121)
T ss_dssp HHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCceEEEECCCCHHHHHHHHHhcc
Confidence 6788899999999999998889999999998883
No 108
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=47.72 E-value=1.4e+02 Score=26.02 Aligned_cols=91 Identities=12% Similarity=0.078 Sum_probs=56.6
Q ss_pred cCCcHHHH-HHHHHHHhhh-----------CCCeEEEEecchHHHHHHHHHHH----hcCCceEeccCCcCHHHHHHHHH
Q psy1089 222 SSSGKMIV-LNQLLHKLKQ-----------TNHKTLVFSTMVKVLNFIEELCV----LENYNYYRLHGSIRNEERNDAVQ 285 (404)
Q Consensus 222 ~~S~Kl~~-L~~ll~~l~~-----------~~~KvlIFs~~~~~l~~L~~~L~----~~gi~~~~i~G~~~~~~R~~~i~ 285 (404)
..|||-.. +.-++..+.. .+.++||.+.....+.-+.+.+. ..++.+..+.|+.+..+....
T Consensus 69 TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-- 146 (253)
T 1wrb_A 69 TGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIRE-- 146 (253)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHH--
T ss_pred CCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH--
Confidence 45899865 4445544432 23589999998887776665554 346778888888776544332
Q ss_pred HHhCCCCceEEEeeccccc-----cCCCCCCCCEEEE
Q psy1089 286 QFNGSTEWGVFLLSTRAGG-----QGLNLTAADTCIL 317 (404)
Q Consensus 286 ~F~~~~~~~vlLis~~a~g-----~GlnL~~a~~VI~ 317 (404)
... ++.+++.++...- ..+++...+.+|+
T Consensus 147 -~~~--~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lVi 180 (253)
T 1wrb_A 147 -VQM--GCHLLVATPGRLVDFIEKNKISLEFCKYIVL 180 (253)
T ss_dssp -HSS--CCSEEEECHHHHHHHHHTTSBCCTTCCEEEE
T ss_pred -hCC--CCCEEEECHHHHHHHHHcCCCChhhCCEEEE
Confidence 233 3567777766432 2345666777665
No 109
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=47.50 E-value=1.2e+02 Score=25.22 Aligned_cols=91 Identities=12% Similarity=0.150 Sum_probs=56.4
Q ss_pred cCCcHHHHH-HHHHHHhhh--CCCeEEEEecchHHHHHHHHHHHh----c-CCceEeccCCcCHHHHHHHHHHHhCCCCc
Q psy1089 222 SSSGKMIVL-NQLLHKLKQ--TNHKTLVFSTMVKVLNFIEELCVL----E-NYNYYRLHGSIRNEERNDAVQQFNGSTEW 293 (404)
Q Consensus 222 ~~S~Kl~~L-~~ll~~l~~--~~~KvlIFs~~~~~l~~L~~~L~~----~-gi~~~~i~G~~~~~~R~~~i~~F~~~~~~ 293 (404)
..|||-... ..++..+.. .+.++||.+.....+.-+.+.+.. . ++.+..++|+.+..+... .+.. .+
T Consensus 49 TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~--~~ 123 (206)
T 1vec_A 49 NGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM---RLDD--TV 123 (206)
T ss_dssp SSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---HTTS--CC
T ss_pred CCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH---hcCC--CC
Confidence 458998654 344444432 356899999988877766665543 2 678888999888654432 2333 35
Q ss_pred eEEEeecccc-----ccCCCCCCCCEEEE
Q psy1089 294 GVFLLSTRAG-----GQGLNLTAADTCIL 317 (404)
Q Consensus 294 ~vlLis~~a~-----g~GlnL~~a~~VI~ 317 (404)
.+++.++... ...+++...+.+|+
T Consensus 124 ~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 152 (206)
T 1vec_A 124 HVVIATPGRILDLIKKGVAKVDHVQMIVL 152 (206)
T ss_dssp SEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred CEEEeCHHHHHHHHHcCCcCcccCCEEEE
Confidence 6777776542 12335566776666
No 110
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=46.98 E-value=1e+02 Score=28.10 Aligned_cols=90 Identities=14% Similarity=0.130 Sum_probs=56.1
Q ss_pred cCCcHHHHHHHHHHHh-hh-CCCeEEEEecchHHHHHHHHHHHh----cCCceEeccCCcCHHHHHHHHHHHhCCCCceE
Q psy1089 222 SSSGKMIVLNQLLHKL-KQ-TNHKTLVFSTMVKVLNFIEELCVL----ENYNYYRLHGSIRNEERNDAVQQFNGSTEWGV 295 (404)
Q Consensus 222 ~~S~Kl~~L~~ll~~l-~~-~~~KvlIFs~~~~~l~~L~~~L~~----~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v 295 (404)
..|||-....-.+... .. .+.++||.+.......-+.+.+.. .++.+..++|+....+....+. +..+
T Consensus 53 TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------~~~i 126 (367)
T 1hv8_A 53 TGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK------NANI 126 (367)
T ss_dssp SSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH------TCSE
T ss_pred CCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC------CCCE
Confidence 4599987655444333 22 467899999988877766666653 4778888899887655443332 2456
Q ss_pred EEeeccccc-----cCCCCCCCCEEEE
Q psy1089 296 FLLSTRAGG-----QGLNLTAADTCIL 317 (404)
Q Consensus 296 lLis~~a~g-----~GlnL~~a~~VI~ 317 (404)
++.++.... ..+++...+.||+
T Consensus 127 iv~T~~~l~~~~~~~~~~~~~~~~iIi 153 (367)
T 1hv8_A 127 VVGTPGRILDHINRGTLNLKNVKYFIL 153 (367)
T ss_dssp EEECHHHHHHHHHTTCSCTTSCCEEEE
T ss_pred EEecHHHHHHHHHcCCcccccCCEEEE
Confidence 666655432 1244556665555
No 111
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=46.31 E-value=36 Score=35.13 Aligned_cols=50 Identities=16% Similarity=0.168 Sum_probs=45.6
Q ss_pred CCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEecc
Q psy1089 223 SSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLH 272 (404)
Q Consensus 223 ~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~ 272 (404)
.+||...+.+++..+...+.++||-+.....+|-+.+.|...+.+++++.
T Consensus 215 GTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~~~~ilRlG 264 (646)
T 4b3f_X 215 GTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRLG 264 (646)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHTTCCEEECS
T ss_pred CCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhcCCceEEec
Confidence 38999999999999999999999999999999999999988888888874
No 112
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=45.44 E-value=32 Score=26.17 Aligned_cols=38 Identities=11% Similarity=0.153 Sum_probs=30.8
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhcCCc-eEeccCCcC
Q psy1089 239 QTNHKTLVFSTMVKVLNFIEELCVLENYN-YYRLHGSIR 276 (404)
Q Consensus 239 ~~~~KvlIFs~~~~~l~~L~~~L~~~gi~-~~~i~G~~~ 276 (404)
..+..+||||..-.........|...|+. +..+.|+..
T Consensus 50 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 50 EKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp CTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 45678999999877777888899999996 777888764
No 113
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=45.06 E-value=1e+02 Score=28.68 Aligned_cols=90 Identities=11% Similarity=0.100 Sum_probs=57.1
Q ss_pred cCCcHHHH-HHHHHHHhhh--CCCeEEEEecchHHHHHHHHHHH----hcCCceEeccCCcCHHHHHHHHHHHhCCCCce
Q psy1089 222 SSSGKMIV-LNQLLHKLKQ--TNHKTLVFSTMVKVLNFIEELCV----LENYNYYRLHGSIRNEERNDAVQQFNGSTEWG 294 (404)
Q Consensus 222 ~~S~Kl~~-L~~ll~~l~~--~~~KvlIFs~~~~~l~~L~~~L~----~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~ 294 (404)
..+||-.. +..++..+.. .+.++||.+.......-+.+.+. ..++.+..++|+.+..+....+. +..
T Consensus 67 TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~ 140 (394)
T 1fuu_A 67 SGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR------DAQ 140 (394)
T ss_dssp SSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH------HCS
T ss_pred CCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC------CCC
Confidence 45899866 4555555433 46799999998887766666554 45788899999988766554443 145
Q ss_pred EEEeeccccc-----cCCCCCCCCEEEE
Q psy1089 295 VFLLSTRAGG-----QGLNLTAADTCIL 317 (404)
Q Consensus 295 vlLis~~a~g-----~GlnL~~a~~VI~ 317 (404)
+++.++...- ..+.+...+.||+
T Consensus 141 i~v~T~~~l~~~~~~~~~~~~~~~~vIi 168 (394)
T 1fuu_A 141 IVVGTPGRVFDNIQRRRFRTDKIKMFIL 168 (394)
T ss_dssp EEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred EEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 6666655421 2334455565555
No 114
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=44.12 E-value=46 Score=24.53 Aligned_cols=57 Identities=14% Similarity=0.017 Sum_probs=38.4
Q ss_pred eEEEEecchH-HH------HHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhC-CCCceEEEee
Q psy1089 243 KTLVFSTMVK-VL------NFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-STEWGVFLLS 299 (404)
Q Consensus 243 KvlIFs~~~~-~l------~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~-~~~~~vlLis 299 (404)
+++||+.... .. ......|...|++|..++=......+......... ...++++++.
T Consensus 3 ~v~ly~~~~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~ifi~ 67 (93)
T 1t1v_A 3 GLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVNG 67 (93)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEEET
T ss_pred CEEEEEcCCCCCchhhHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCCCCCEEEEC
Confidence 6778865422 24 57778889999999888877777777776666542 1245566654
No 115
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=43.72 E-value=1.5e+02 Score=27.79 Aligned_cols=92 Identities=13% Similarity=0.079 Sum_probs=57.9
Q ss_pred ccCCcHHH-HHHHHHHHhhhC--------------------CCeEEEEecchHHHHHHHHHHH----hcCCceEeccCCc
Q psy1089 221 VSSSGKMI-VLNQLLHKLKQT--------------------NHKTLVFSTMVKVLNFIEELCV----LENYNYYRLHGSI 275 (404)
Q Consensus 221 ~~~S~Kl~-~L~~ll~~l~~~--------------------~~KvlIFs~~~~~l~~L~~~L~----~~gi~~~~i~G~~ 275 (404)
...|||-. ++..++..+... +.++||.+.....+.-+.+.+. ..++.+..++|+.
T Consensus 60 ~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~ 139 (417)
T 2i4i_A 60 QTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGA 139 (417)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSS
T ss_pred CCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCC
Confidence 34589986 355565554322 2579999999887776666554 3578888999998
Q ss_pred CHHHHHHHHHHHhCCCCceEEEeeccccc-----cCCCCCCCCEEEE
Q psy1089 276 RNEERNDAVQQFNGSTEWGVFLLSTRAGG-----QGLNLTAADTCIL 317 (404)
Q Consensus 276 ~~~~R~~~i~~F~~~~~~~vlLis~~a~g-----~GlnL~~a~~VI~ 317 (404)
+..+.... ...+ +.+++.++.... ..+++...+.||+
T Consensus 140 ~~~~~~~~---~~~~--~~I~v~Tp~~l~~~l~~~~~~~~~~~~iVi 181 (417)
T 2i4i_A 140 DIGQQIRD---LERG--CHLLVATPGRLVDMMERGKIGLDFCKYLVL 181 (417)
T ss_dssp CHHHHHHH---HTTC--CSEEEECHHHHHHHHHTTSBCCTTCCEEEE
T ss_pred CHHHHHHH---hhCC--CCEEEEChHHHHHHHHcCCcChhhCcEEEE
Confidence 87654333 3333 567777765432 2345666666665
No 116
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=43.72 E-value=20 Score=27.00 Aligned_cols=37 Identities=8% Similarity=0.047 Sum_probs=31.1
Q ss_pred CCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcC
Q psy1089 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIR 276 (404)
Q Consensus 240 ~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~ 276 (404)
.+.++++||..-.........|...|+++..+.|+..
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 4678999999887778888899999998888888763
No 117
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=43.31 E-value=1.2e+02 Score=23.78 Aligned_cols=59 Identities=15% Similarity=0.117 Sum_probs=40.1
Q ss_pred CeEEEEec------chHHHHHHHHHHHhcCCc-eEeccCCcCHHHHHHHHHHHhCCCCceEEEeecc
Q psy1089 242 HKTLVFST------MVKVLNFIEELCVLENYN-YYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTR 301 (404)
Q Consensus 242 ~KvlIFs~------~~~~l~~L~~~L~~~gi~-~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~ 301 (404)
.+|+||+. +-.......+.|...|++ |..++=....+.+..+. .+.....+.++++...
T Consensus 20 ~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~-~~tg~~tvP~vfI~g~ 85 (118)
T 2wem_A 20 DKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIK-DYSNWPTIPQVYLNGE 85 (118)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHH-HHHTCCSSCEEEETTE
T ss_pred CCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHH-HHhCCCCcCeEEECCE
Confidence 48999988 466788889999999995 87776555555555443 4433345666666543
No 118
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=43.14 E-value=30 Score=29.83 Aligned_cols=91 Identities=13% Similarity=0.136 Sum_probs=54.4
Q ss_pred cCCcHHHH-HHHHHHHhhh--CCCeEEEEecchHHHHHHHHHHHhc--------CCceEeccCCcCHHHHHHHHHHHhCC
Q psy1089 222 SSSGKMIV-LNQLLHKLKQ--TNHKTLVFSTMVKVLNFIEELCVLE--------NYNYYRLHGSIRNEERNDAVQQFNGS 290 (404)
Q Consensus 222 ~~S~Kl~~-L~~ll~~l~~--~~~KvlIFs~~~~~l~~L~~~L~~~--------gi~~~~i~G~~~~~~R~~~i~~F~~~ 290 (404)
..|||-.. +..++..+.. .+.++||.+.....+.-+.+.+... ++.+..+.|+.+..+.. ..+..
T Consensus 50 TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~- 125 (219)
T 1q0u_A 50 TGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---EKLNV- 125 (219)
T ss_dssp SSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---CCCSS-
T ss_pred CCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---HHcCC-
Confidence 45899876 4455555433 3568999999888766666655422 67888888887643221 11222
Q ss_pred CCceEEEeeccccc-----cCCCCCCCCEEEE
Q psy1089 291 TEWGVFLLSTRAGG-----QGLNLTAADTCIL 317 (404)
Q Consensus 291 ~~~~vlLis~~a~g-----~GlnL~~a~~VI~ 317 (404)
++.+++.++...- ..+++...+.+|+
T Consensus 126 -~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lVi 156 (219)
T 1q0u_A 126 -QPHIVIGTPGRINDFIREQALDVHTAHILVV 156 (219)
T ss_dssp -CCSEEEECHHHHHHHHHTTCCCGGGCCEEEE
T ss_pred -CCCEEEeCHHHHHHHHHcCCCCcCcceEEEE
Confidence 3567777764322 2345666666555
No 119
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=42.95 E-value=74 Score=24.16 Aligned_cols=58 Identities=12% Similarity=0.048 Sum_probs=39.4
Q ss_pred CCeEEEEec------chHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEee
Q psy1089 241 NHKTLVFST------MVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLS 299 (404)
Q Consensus 241 ~~KvlIFs~------~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis 299 (404)
..+++||+. .-..+......|...|++|..++=......+......... ..+.++++.
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~-~~vP~ifi~ 77 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNW-PTYPQLYVR 77 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSC-CSSCEEECS
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhCC-CCCCEEEEC
Confidence 457999987 2335778888899999999888876666656655544432 345566654
No 120
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=42.87 E-value=1.2e+02 Score=23.89 Aligned_cols=59 Identities=15% Similarity=0.157 Sum_probs=37.6
Q ss_pred CeEEEEecc------hHHHHHHHHHHHhcCC-ceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecc
Q psy1089 242 HKTLVFSTM------VKVLNFIEELCVLENY-NYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTR 301 (404)
Q Consensus 242 ~KvlIFs~~------~~~l~~L~~~L~~~gi-~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~ 301 (404)
.+|+||+.. -.+.......|...|+ +|..++=....+-| ..+..+...+.++-+++...
T Consensus 20 ~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~~~~~r-~~l~~~sg~~TvPqIFI~g~ 85 (118)
T 2wul_A 20 DKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELR-QGIKDYSNWPTIPQVYLNGE 85 (118)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEETTSCHHHH-HHHHHHHTCCSSCEEEETTE
T ss_pred CCEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeecccCCHHHH-HHHHHhccCCCCCeEeECCE
Confidence 589999753 4456677778888888 57776655555444 44555555555555555544
No 121
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=42.56 E-value=1.5e+02 Score=27.69 Aligned_cols=93 Identities=11% Similarity=0.098 Sum_probs=56.9
Q ss_pred cCCcHHHHH-HHHHHHhhh--CCCeEEEEecchHHHHHHHHHHH----hcCCceEeccCCcCHHHHHHHHHHHhCCCCce
Q psy1089 222 SSSGKMIVL-NQLLHKLKQ--TNHKTLVFSTMVKVLNFIEELCV----LENYNYYRLHGSIRNEERNDAVQQFNGSTEWG 294 (404)
Q Consensus 222 ~~S~Kl~~L-~~ll~~l~~--~~~KvlIFs~~~~~l~~L~~~L~----~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~ 294 (404)
..+||-... .-++..+.. .+.++||.+.......-+.+.+. ..++.+..++|+....+... .... ...
T Consensus 67 TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~--~~~ 141 (400)
T 1s2m_A 67 NGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIL---RLNE--TVH 141 (400)
T ss_dssp TTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHH---HTTS--CCS
T ss_pred CCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHH---HhcC--CCC
Confidence 458999754 444444432 45689999998887766666554 34788888999887644322 2222 356
Q ss_pred EEEeecccc-----ccCCCCCCCCEEEEec
Q psy1089 295 VFLLSTRAG-----GQGLNLTAADTCILYD 319 (404)
Q Consensus 295 vlLis~~a~-----g~GlnL~~a~~VI~~d 319 (404)
++++++... ....++...+.||+=+
T Consensus 142 Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE 171 (400)
T 1s2m_A 142 ILVGTPGRVLDLASRKVADLSDCSLFIMDE 171 (400)
T ss_dssp EEEECHHHHHHHHHTTCSCCTTCCEEEEES
T ss_pred EEEEchHHHHHHHHhCCcccccCCEEEEeC
Confidence 777775532 2234566666666633
No 122
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=42.22 E-value=38 Score=25.75 Aligned_cols=94 Identities=7% Similarity=-0.074 Sum_probs=49.5
Q ss_pred CCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhC---CCCceEEEeeccccccCCCC--CCCCE
Q psy1089 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG---STEWGVFLLSTRAGGQGLNL--TAADT 314 (404)
Q Consensus 240 ~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~---~~~~~vlLis~~a~g~GlnL--~~a~~ 314 (404)
.|..+..+......++.+ ....+..+.++-.++...-...+...+. .+.+.+++++......-... .+++.
T Consensus 26 ~g~~v~~~~~~~~a~~~l----~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~g~~~ 101 (127)
T 3i42_A 26 LGFQADYVMSGTDALHAM----STRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKNDLGKEACELFDF 101 (127)
T ss_dssp TTEEEEEESSHHHHHHHH----HHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CTTCCHHHHHHCSE
T ss_pred cCCCEEEECCHHHHHHHH----HhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcchhHHHHHHHhhHH
Confidence 355566555544444433 4456777777655544334445555443 34567777765433221111 12333
Q ss_pred EEEecCCCCchhHHHHHHhhhccCC
Q psy1089 315 CILYDSDWNPQVDIQAEARCHRIGQ 339 (404)
Q Consensus 315 VI~~d~~wnp~~~~Qa~gR~~R~Gq 339 (404)
++.-|+++....+++.+.++-+.
T Consensus 102 --~l~KP~~~~~L~~~i~~~~~~~~ 124 (127)
T 3i42_A 102 --YLEKPIDIASLEPILQSIEGHHH 124 (127)
T ss_dssp --EEESSCCHHHHHHHHHHHC----
T ss_pred --heeCCCCHHHHHHHHHHhhccCC
Confidence 55678888888888888776554
No 123
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=42.11 E-value=1.2e+02 Score=25.11 Aligned_cols=77 Identities=10% Similarity=0.122 Sum_probs=51.3
Q ss_pred HHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCC
Q psy1089 229 VLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLN 308 (404)
Q Consensus 229 ~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~Gln 308 (404)
.+.+.+.........+.|.+........++..|...|+++..+++... .|. ..|.++ |--.+-|+-
T Consensus 49 ~i~~~I~~~~~g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~---------~~~----~~v~v~-t~~~~KGlE 114 (174)
T 3dmn_A 49 QVVDQLAMNDSERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ---------RLA----PGVIVV-PSFLAKGLE 114 (174)
T ss_dssp HHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC----------CCC----SSEEEE-EGGGCTTCC
T ss_pred HHHHHHHHhccCCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc---------ccC----CCeEEE-EccccCCcC
Confidence 444444443334567888899999999999999999999988876442 122 133343 444556764
Q ss_pred CCCCCEEEEecCCC
Q psy1089 309 LTAADTCILYDSDW 322 (404)
Q Consensus 309 L~~a~~VI~~d~~w 322 (404)
.++||++++..
T Consensus 115 ---f~~V~~~~~~~ 125 (174)
T 3dmn_A 115 ---FDAVIVWNANQ 125 (174)
T ss_dssp ---EEEEEEETCBT
T ss_pred ---CCEEEEecCCc
Confidence 67888888754
No 124
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=41.61 E-value=46 Score=29.11 Aligned_cols=91 Identities=16% Similarity=0.305 Sum_probs=56.0
Q ss_pred ccCCcHHHH-HHHHHHHhhh---CCCeEEEEecchHHHHHHHHHHHh----cCCceEeccCCcCHHHHHHHHHHHhC--C
Q psy1089 221 VSSSGKMIV-LNQLLHKLKQ---TNHKTLVFSTMVKVLNFIEELCVL----ENYNYYRLHGSIRNEERNDAVQQFNG--S 290 (404)
Q Consensus 221 ~~~S~Kl~~-L~~ll~~l~~---~~~KvlIFs~~~~~l~~L~~~L~~----~gi~~~~i~G~~~~~~R~~~i~~F~~--~ 290 (404)
...|||-.. +..++..+.. .+.++||.+.....+.-+.+.+.. .++.+..++|+.... ..+.. .
T Consensus 74 ~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 147 (245)
T 3dkp_A 74 PTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAA------KKFGPKSS 147 (245)
T ss_dssp CTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHH------TTTSTTSC
T ss_pred CCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHH------HHhhhhhc
Confidence 356999865 5566665543 456899999998877777666654 367777776644321 11211 1
Q ss_pred CCceEEEeecccc-------ccCCCCCCCCEEEE
Q psy1089 291 TEWGVFLLSTRAG-------GQGLNLTAADTCIL 317 (404)
Q Consensus 291 ~~~~vlLis~~a~-------g~GlnL~~a~~VI~ 317 (404)
.++.+++.++... ..++++.....+|+
T Consensus 148 ~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lVi 181 (245)
T 3dkp_A 148 KKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVV 181 (245)
T ss_dssp CCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEE
T ss_pred CCCCEEEECHHHHHHHHHhCCCCcccccCcEEEE
Confidence 2456777775543 22567777777766
No 125
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=41.40 E-value=49 Score=23.79 Aligned_cols=44 Identities=11% Similarity=0.126 Sum_probs=29.6
Q ss_pred HHHHHh-hhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCc
Q psy1089 232 QLLHKL-KQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSI 275 (404)
Q Consensus 232 ~ll~~l-~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~ 275 (404)
+.+..+ ...+.+++|+|..-.........|...|++-+.+-|+.
T Consensus 31 ~~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~lGG~ 75 (85)
T 2jtq_A 31 ERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENAGGL 75 (85)
T ss_dssp HHHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEEEET
T ss_pred HHHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEeccCH
Confidence 334444 24567899999987777777888888888643333653
No 126
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=40.63 E-value=20 Score=27.07 Aligned_cols=37 Identities=8% Similarity=0.005 Sum_probs=30.8
Q ss_pred CCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcC
Q psy1089 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIR 276 (404)
Q Consensus 240 ~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~ 276 (404)
.+.++++||............|...|+++..+.|+..
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 4678999999887777888899999998888888753
No 127
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=40.11 E-value=21 Score=27.42 Aligned_cols=36 Identities=8% Similarity=-0.000 Sum_probs=29.9
Q ss_pred CCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCc
Q psy1089 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSI 275 (404)
Q Consensus 240 ~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~ 275 (404)
.+++++++|..-.........|...|++.+.+.|++
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 467899999887767777888999999988888875
No 128
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=40.04 E-value=28 Score=29.54 Aligned_cols=76 Identities=14% Similarity=0.127 Sum_probs=43.4
Q ss_pred cCCcHHHHHHHHHHHhhh------CCCeEEEEecchHHHHH-HHHHHH---hcCCceEeccCCcCHHHHHHHHHHHhCCC
Q psy1089 222 SSSGKMIVLNQLLHKLKQ------TNHKTLVFSTMVKVLNF-IEELCV---LENYNYYRLHGSIRNEERNDAVQQFNGST 291 (404)
Q Consensus 222 ~~S~Kl~~L~~ll~~l~~------~~~KvlIFs~~~~~l~~-L~~~L~---~~gi~~~~i~G~~~~~~R~~~i~~F~~~~ 291 (404)
..+||-......+..... .+.++||.+.....++- +.+.+. ..++.+..++|+.....+...+. .
T Consensus 57 tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~---~-- 131 (216)
T 3b6e_A 57 TGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV---K-- 131 (216)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH---H--
T ss_pred CCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc---c--
Confidence 348898776655554321 26799999998776554 544443 33678888888765432222221 1
Q ss_pred CceEEEeeccc
Q psy1089 292 EWGVFLLSTRA 302 (404)
Q Consensus 292 ~~~vlLis~~a 302 (404)
...+++.++..
T Consensus 132 ~~~i~v~T~~~ 142 (216)
T 3b6e_A 132 SCDIIISTAQI 142 (216)
T ss_dssp HCSEEEEEHHH
T ss_pred CCCEEEECHHH
Confidence 24567777654
No 129
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=39.69 E-value=90 Score=25.17 Aligned_cols=58 Identities=5% Similarity=-0.045 Sum_probs=39.8
Q ss_pred CeEEEEec------chHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeec
Q psy1089 242 HKTLVFST------MVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLST 300 (404)
Q Consensus 242 ~KvlIFs~------~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~ 300 (404)
.+|+||+. .-..+......|...|++|..++=......+..+..... .+.++++++..
T Consensus 35 ~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G-~~tvP~VfI~G 98 (135)
T 2wci_A 35 NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYAN-WPTFPQLWVDG 98 (135)
T ss_dssp CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHT-CCSSCEEEETT
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHC-CCCcCEEEECC
Confidence 47999977 455678889999999999988876556655555544443 33455666553
No 130
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=39.65 E-value=1e+02 Score=23.30 Aligned_cols=74 Identities=9% Similarity=0.043 Sum_probs=39.4
Q ss_pred CceEeccCCcCHHHHHHHHHHHhCC-CCceEEEeeccccc-----cCC-CCCCCCEEEEecCCCCchhHHHHHHhhhccC
Q psy1089 266 YNYYRLHGSIRNEERNDAVQQFNGS-TEWGVFLLSTRAGG-----QGL-NLTAADTCILYDSDWNPQVDIQAEARCHRIG 338 (404)
Q Consensus 266 i~~~~i~G~~~~~~R~~~i~~F~~~-~~~~vlLis~~a~g-----~Gl-nL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~G 338 (404)
+..+.++-.++...-...+...+.. +.+.+++++..... ..+ ....+...-++.-|+++....+++.++...+
T Consensus 47 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~ 126 (135)
T 3eqz_A 47 QDIIILDLMMPDMDGIEVIRHLAEHKSPASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQ 126 (135)
T ss_dssp TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhc
Confidence 5666666666554555555555432 34666666644321 100 1122233344566777777777777776654
Q ss_pred C
Q psy1089 339 Q 339 (404)
Q Consensus 339 q 339 (404)
+
T Consensus 127 ~ 127 (135)
T 3eqz_A 127 A 127 (135)
T ss_dssp -
T ss_pred c
Confidence 4
No 131
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=38.51 E-value=42 Score=27.88 Aligned_cols=38 Identities=11% Similarity=0.053 Sum_probs=34.8
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHH
Q psy1089 224 SGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELC 261 (404)
Q Consensus 224 S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L 261 (404)
..+....++|+.+....|.+|+|.|.....++.|-+.|
T Consensus 22 ~~~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~L 59 (150)
T 3sxu_A 22 SAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEAL 59 (150)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHH
Confidence 45888999999999999999999999999999999988
No 132
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=38.43 E-value=28 Score=25.82 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=29.0
Q ss_pred CeEEEEecchHHHHHHHHHHHhcCCceEeccCCcC
Q psy1089 242 HKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIR 276 (404)
Q Consensus 242 ~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~ 276 (404)
.+++++|..-.........|...|+.+..++|+..
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999887777788889999999777888764
No 133
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=37.89 E-value=1.8e+02 Score=26.07 Aligned_cols=87 Identities=10% Similarity=0.110 Sum_probs=55.1
Q ss_pred cCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHH----hcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEE
Q psy1089 222 SSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCV----LENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFL 297 (404)
Q Consensus 222 ~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~----~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL 297 (404)
..+||-....-.+. ..+.++||.+.....+.-+.+.+. ..++.+..++|+.+..+.... +.+ ..+++
T Consensus 40 TGsGKT~~~~~~~~---~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~i~v 110 (337)
T 2z0m_A 40 TGSGKTAAYAIPIL---ELGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VRN---ADIVV 110 (337)
T ss_dssp TTSSHHHHHHHHHH---HHTCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HTT---CSEEE
T ss_pred CCCcHHHHHHHHHH---hhcCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cCC---CCEEE
Confidence 45899876544332 237799999998887777666665 346788889998887654333 222 45677
Q ss_pred eeccccc-----cCCCCCCCCEEEE
Q psy1089 298 LSTRAGG-----QGLNLTAADTCIL 317 (404)
Q Consensus 298 is~~a~g-----~GlnL~~a~~VI~ 317 (404)
+++.... ..+++...+.||+
T Consensus 111 ~T~~~l~~~~~~~~~~~~~~~~iVi 135 (337)
T 2z0m_A 111 ATPGRLLDLWSKGVIDLSSFEIVII 135 (337)
T ss_dssp ECHHHHHHHHHTTSCCGGGCSEEEE
T ss_pred ECHHHHHHHHHcCCcchhhCcEEEE
Confidence 6655422 2334556666555
No 134
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=37.47 E-value=2.3e+02 Score=26.38 Aligned_cols=92 Identities=15% Similarity=0.109 Sum_probs=57.2
Q ss_pred ccCCcHHHHHH-HHHHHhh--hCCCeEEEEecchHHHHHHHHHHH----hcCCceEeccCCcCHHHHHHHHHHHhCCCCc
Q psy1089 221 VSSSGKMIVLN-QLLHKLK--QTNHKTLVFSTMVKVLNFIEELCV----LENYNYYRLHGSIRNEERNDAVQQFNGSTEW 293 (404)
Q Consensus 221 ~~~S~Kl~~L~-~ll~~l~--~~~~KvlIFs~~~~~l~~L~~~L~----~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~ 293 (404)
...|||-.... -++..+. ..+.++||.+.......-+.+.+. ..++.+..+.|+.+..+....+. .+ +
T Consensus 82 ~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~--~ 156 (410)
T 2j0s_A 82 QSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD---YG--Q 156 (410)
T ss_dssp CTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHH---HC--C
T ss_pred CCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhh---cC--C
Confidence 34699996544 4444332 256799999998887776766664 34677888899888766544433 23 4
Q ss_pred eEEEeecccc-----ccCCCCCCCCEEEE
Q psy1089 294 GVFLLSTRAG-----GQGLNLTAADTCIL 317 (404)
Q Consensus 294 ~vlLis~~a~-----g~GlnL~~a~~VI~ 317 (404)
.+++.++... ...+.+...+.||+
T Consensus 157 ~ivv~Tp~~l~~~l~~~~~~~~~~~~vVi 185 (410)
T 2j0s_A 157 HVVAGTPGRVFDMIRRRSLRTRAIKMLVL 185 (410)
T ss_dssp SEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CEEEcCHHHHHHHHHhCCccHhheeEEEE
Confidence 5666665321 12345556666665
No 135
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=37.38 E-value=41 Score=25.50 Aligned_cols=38 Identities=11% Similarity=0.217 Sum_probs=30.8
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhcCCc-eEeccCCcC
Q psy1089 239 QTNHKTLVFSTMVKVLNFIEELCVLENYN-YYRLHGSIR 276 (404)
Q Consensus 239 ~~~~KvlIFs~~~~~l~~L~~~L~~~gi~-~~~i~G~~~ 276 (404)
..+..++|+|............|...|+. +..+.|+..
T Consensus 56 ~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 56 DFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp CTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 45678999999877777888889999995 677888764
No 136
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=37.19 E-value=56 Score=35.46 Aligned_cols=92 Identities=16% Similarity=0.171 Sum_probs=53.6
Q ss_pred ccCCcHHHHHHHHHHHhhhC-----CCeEEEEecchHHHHHHHHHHH----hcCCceEeccCCcCHHHHHHHHHHHhCCC
Q psy1089 221 VSSSGKMIVLNQLLHKLKQT-----NHKTLVFSTMVKVLNFIEELCV----LENYNYYRLHGSIRNEERNDAVQQFNGST 291 (404)
Q Consensus 221 ~~~S~Kl~~L~~ll~~l~~~-----~~KvlIFs~~~~~l~~L~~~L~----~~gi~~~~i~G~~~~~~R~~~i~~F~~~~ 291 (404)
...|||.....-.+...... +.++||.+.....+.-+...++ ..++.+..++|+.+...+...+..
T Consensus 271 ~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~----- 345 (936)
T 4a2w_A 271 PTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIE----- 345 (936)
T ss_dssp CTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHHH-----
T ss_pred CCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhcc-----
Confidence 35699987765555444332 6789999998877665555554 348999999999876543222211
Q ss_pred CceEEEeecccccc-----CC-CCCCCCEEEE
Q psy1089 292 EWGVFLLSTRAGGQ-----GL-NLTAADTCIL 317 (404)
Q Consensus 292 ~~~vlLis~~a~g~-----Gl-nL~~a~~VI~ 317 (404)
+..+++.++..... .+ .+...+.||+
T Consensus 346 ~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liVi 377 (936)
T 4a2w_A 346 DSDIIVVTPQILVNSFEDGTLTSLSIFTLMIF 377 (936)
T ss_dssp HCSEEEECHHHHHHHHHSSSCCCGGGCSEEEE
T ss_pred CCCEEEecHHHHHHHHHcCccccccCCCEEEE
Confidence 14567776654331 12 4455666665
No 137
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=36.35 E-value=41 Score=33.20 Aligned_cols=89 Identities=10% Similarity=0.080 Sum_probs=56.2
Q ss_pred cCCcHHHHHHHHHHHhhhCC-CeEEEEecchHHHHHHHHHHHhc----CCceEeccCCcCHHHHHHHHHHHhCCCCceEE
Q psy1089 222 SSSGKMIVLNQLLHKLKQTN-HKTLVFSTMVKVLNFIEELCVLE----NYNYYRLHGSIRNEERNDAVQQFNGSTEWGVF 296 (404)
Q Consensus 222 ~~S~Kl~~L~~ll~~l~~~~-~KvlIFs~~~~~l~~L~~~L~~~----gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vl 296 (404)
..+||.......+......+ .++||.+.....+.-+.+.+... +..+..++|+.+..++ .. ....++
T Consensus 137 tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~-~~~~I~ 208 (510)
T 2oca_A 137 TSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK-------YK-NDAPVV 208 (510)
T ss_dssp STTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG-------GC-TTCSEE
T ss_pred CCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc-------cc-cCCcEE
Confidence 45899988776666554434 49999999988877777777644 2467778887765433 12 246778
Q ss_pred EeeccccccC--CCCCCCCEEEEec
Q psy1089 297 LLSTRAGGQG--LNLTAADTCILYD 319 (404)
Q Consensus 297 Lis~~a~g~G--lnL~~a~~VI~~d 319 (404)
+++....... ..+.....| ++|
T Consensus 209 i~T~~~l~~~~~~~~~~~~li-IiD 232 (510)
T 2oca_A 209 VGTWQTVVKQPKEWFSQFGMM-MND 232 (510)
T ss_dssp EEEHHHHTTSCGGGGGGEEEE-EEE
T ss_pred EEeHHHHhhchhhhhhcCCEE-EEE
Confidence 8877754433 223344444 444
No 138
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=35.89 E-value=1.4e+02 Score=22.67 Aligned_cols=93 Identities=4% Similarity=-0.031 Sum_probs=43.4
Q ss_pred CCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhC---CCCceEEEeecccccc-CCCCCCCCEEE
Q psy1089 241 NHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG---STEWGVFLLSTRAGGQ-GLNLTAADTCI 316 (404)
Q Consensus 241 ~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~---~~~~~vlLis~~a~g~-GlnL~~a~~VI 316 (404)
|-.+..+......++. +....+..+.++-.++...-...+...+. .+.+.+++++...... -.....+...-
T Consensus 31 g~~v~~~~~~~~a~~~----l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~ 106 (142)
T 3cg4_A 31 GFHIISADSGGQCIDL----LKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTAKNAPDAKMIGLQEYVVD 106 (142)
T ss_dssp TCEEEEESSHHHHHHH----HHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEECTTCCCCSSTTGGGGEEE
T ss_pred CeEEEEeCCHHHHHHH----HHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEECCCCHHHHHHHHhcCccE
Confidence 4555444433333332 33444566666544433222334444433 3356666666443221 11222233333
Q ss_pred EecCCCCchhHHHHHHhhhcc
Q psy1089 317 LYDSDWNPQVDIQAEARCHRI 337 (404)
Q Consensus 317 ~~d~~wnp~~~~Qa~gR~~R~ 337 (404)
++..|.++....+++.++.+.
T Consensus 107 ~l~kp~~~~~l~~~i~~~~~~ 127 (142)
T 3cg4_A 107 YITKPFDNEDLIEKTTFFMGF 127 (142)
T ss_dssp EEESSCCHHHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHH
Confidence 445577777777766665543
No 139
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=35.45 E-value=64 Score=29.01 Aligned_cols=75 Identities=11% Similarity=0.096 Sum_probs=46.9
Q ss_pred cCCcHHHHHHHHHHHhhhC-CCeEEEEecchHHHHHHHHHHHhcCC----ceEeccCCcCHHHHHHHHHHHhCCCCceEE
Q psy1089 222 SSSGKMIVLNQLLHKLKQT-NHKTLVFSTMVKVLNFIEELCVLENY----NYYRLHGSIRNEERNDAVQQFNGSTEWGVF 296 (404)
Q Consensus 222 ~~S~Kl~~L~~ll~~l~~~-~~KvlIFs~~~~~l~~L~~~L~~~gi----~~~~i~G~~~~~~R~~~i~~F~~~~~~~vl 296 (404)
..+||-.....++...... +.++||.+.....+.-+.+.+...+. .+..+.|+.+..+ .......++
T Consensus 137 tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~I~ 208 (282)
T 1rif_A 137 TSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD--------KYKNDAPVV 208 (282)
T ss_dssp TTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT--------CCCTTCSEE
T ss_pred CCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh--------hhccCCcEE
Confidence 4589998877666654443 34999999888877777776665432 4566666654321 111245677
Q ss_pred Eeeccccc
Q psy1089 297 LLSTRAGG 304 (404)
Q Consensus 297 Lis~~a~g 304 (404)
+.+.+...
T Consensus 209 v~T~~~l~ 216 (282)
T 1rif_A 209 VGTWQTVV 216 (282)
T ss_dssp EECHHHHT
T ss_pred EEchHHHH
Confidence 77766543
No 140
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=33.52 E-value=13 Score=38.44 Aligned_cols=91 Identities=13% Similarity=0.108 Sum_probs=54.2
Q ss_pred cCCcHHHHHHHHHHHhhh------CCCeEEEEecchHHHHHH-HHHHHhc---CCceEeccCCcCHHHHHHHHHHHhCCC
Q psy1089 222 SSSGKMIVLNQLLHKLKQ------TNHKTLVFSTMVKVLNFI-EELCVLE---NYNYYRLHGSIRNEERNDAVQQFNGST 291 (404)
Q Consensus 222 ~~S~Kl~~L~~ll~~l~~------~~~KvlIFs~~~~~l~~L-~~~L~~~---gi~~~~i~G~~~~~~R~~~i~~F~~~~ 291 (404)
..+||-....-.+..... .+.++||.+.....+.-+ ...|+.. ++.+..++|+.+..++...+. .
T Consensus 31 TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~---~-- 105 (699)
T 4gl2_A 31 TGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV---K-- 105 (699)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----CCCCHHHHH---H--
T ss_pred CCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcCceEEEEeCCcchhhHHHhhh---c--
Confidence 458998765555543322 227899999988776666 6666533 288999999877544333322 2
Q ss_pred CceEEEeeccccccC-----------CCCCCCCEEEE
Q psy1089 292 EWGVFLLSTRAGGQG-----------LNLTAADTCIL 317 (404)
Q Consensus 292 ~~~vlLis~~a~g~G-----------lnL~~a~~VI~ 317 (404)
...++++++...... +.+...+.||+
T Consensus 106 ~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvVi 142 (699)
T 4gl2_A 106 SCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIII 142 (699)
T ss_dssp SCSEEEEEHHHHHHHTC--------CCCGGGCSEEEE
T ss_pred CCCEEEECHHHHHHHHhccccccccceecccCcEEEE
Confidence 356788887765432 35566776666
No 141
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=32.45 E-value=59 Score=26.30 Aligned_cols=38 Identities=8% Similarity=0.023 Sum_probs=28.8
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhcCCc-eEeccCCcC
Q psy1089 239 QTNHKTLVFSTMVKVLNFIEELCVLENYN-YYRLHGSIR 276 (404)
Q Consensus 239 ~~~~KvlIFs~~~~~l~~L~~~L~~~gi~-~~~i~G~~~ 276 (404)
..+.++||||..-.........|...|+. +..+.|+..
T Consensus 78 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 78 QHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp ---CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 35678999999876667778889999994 778888874
No 142
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=32.31 E-value=1.5e+02 Score=22.07 Aligned_cols=62 Identities=11% Similarity=0.072 Sum_probs=39.9
Q ss_pred CCCeEEEEecc-hHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecc
Q psy1089 240 TNHKTLVFSTM-VKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTR 301 (404)
Q Consensus 240 ~~~KvlIFs~~-~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~ 301 (404)
...+++||+.. -..+.....+|...|++|..++=......+............+.++++...
T Consensus 14 ~~~~v~vy~~~~Cp~C~~ak~~L~~~~i~y~~idI~~~~~~~~~l~~~~~g~~~vP~ifi~g~ 76 (99)
T 3qmx_A 14 VSAKIEIYTWSTCPFCMRALALLKRKGVEFQEYCIDGDNEAREAMAARANGKRSLPQIFIDDQ 76 (99)
T ss_dssp CCCCEEEEECTTCHHHHHHHHHHHHHTCCCEEEECTTCHHHHHHHHHHTTTCCCSCEEEETTE
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHCCCCCEEEEcCCCHHHHHHHHHHhCCCCCCCEEEECCE
Confidence 34688888654 345777888889999999888776666555554443312234566666533
No 143
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=32.12 E-value=1.8e+02 Score=25.15 Aligned_cols=92 Identities=13% Similarity=0.138 Sum_probs=50.0
Q ss_pred cCCcHHHH-HHHHHHHhhh--CCCeEEEEecchHHHHHHHHHHHh----cCCceEeccCCcCHHHHHHHHHHHhCCCCce
Q psy1089 222 SSSGKMIV-LNQLLHKLKQ--TNHKTLVFSTMVKVLNFIEELCVL----ENYNYYRLHGSIRNEERNDAVQQFNGSTEWG 294 (404)
Q Consensus 222 ~~S~Kl~~-L~~ll~~l~~--~~~KvlIFs~~~~~l~~L~~~L~~----~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~ 294 (404)
..|||-.. +..++..+.. .+.++||.+.......-+.+.++. .++.+..+.|+.+.... ......+ .+.
T Consensus 76 TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~~~-~~~ 151 (237)
T 3bor_A 76 SGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNE---MQKLQAE-APH 151 (237)
T ss_dssp SSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------C-CCS
T ss_pred CCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHH---HHHHhcC-CCC
Confidence 45899866 4455554432 456899999988877767666653 35777777887664332 2223333 256
Q ss_pred EEEeecccc-----ccCCCCCCCCEEEE
Q psy1089 295 VFLLSTRAG-----GQGLNLTAADTCIL 317 (404)
Q Consensus 295 vlLis~~a~-----g~GlnL~~a~~VI~ 317 (404)
+++.++... ...+++.....||+
T Consensus 152 Ilv~Tp~~l~~~l~~~~~~~~~~~~lVi 179 (237)
T 3bor_A 152 IVVGTPGRVFDMLNRRYLSPKWIKMFVL 179 (237)
T ss_dssp EEEECHHHHHHHHHTTSSCSTTCCEEEE
T ss_pred EEEECHHHHHHHHHhCCcCcccCcEEEE
Confidence 666664331 12355666776665
No 144
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=31.97 E-value=1.9e+02 Score=26.22 Aligned_cols=129 Identities=10% Similarity=0.057 Sum_probs=73.5
Q ss_pred HHHHHHHhhhCCCeEEEE---ecch--HHHHHHHHHHHhcCCceEecc----------------------CCcCHHHHHH
Q psy1089 230 LNQLLHKLKQTNHKTLVF---STMV--KVLNFIEELCVLENYNYYRLH----------------------GSIRNEERND 282 (404)
Q Consensus 230 L~~ll~~l~~~~~KvlIF---s~~~--~~l~~L~~~L~~~gi~~~~i~----------------------G~~~~~~R~~ 282 (404)
+.+....+..++++.+|- +-++ .....+-..|...|.++..+. ++++...--.
T Consensus 5 i~~~f~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~ 84 (267)
T 3vnd_A 5 YQAKFAALKAQDKGAFVPFVTIGDPSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFD 84 (267)
T ss_dssp HHHHHHHHHHHTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Confidence 445555555556666543 2223 333334445556676655443 3344444467
Q ss_pred HHHHHhCC-CCceEEEeec-c-ccccCCCC-------CCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCC
Q psy1089 283 AVQQFNGS-TEWGVFLLST-R-AGGQGLNL-------TAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHS 352 (404)
Q Consensus 283 ~i~~F~~~-~~~~vlLis~-~-a~g~GlnL-------~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~ 352 (404)
.+.+++.. .++.+++++. . ....|+.- .+++-+|+-|.|..-..... ..+.+. .+....++++.
T Consensus 85 ~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~--~~~~~~----gl~~i~liaP~ 158 (267)
T 3vnd_A 85 IITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFS--KAAKAH----GIAPIFIAPPN 158 (267)
T ss_dssp HHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHH--HHHHHT----TCEEECEECTT
T ss_pred HHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHH--HHHHHc----CCeEEEEECCC
Confidence 78888754 4566777643 2 23344431 36888999998874332222 222222 36778889999
Q ss_pred CHHHHHHHHHhc
Q psy1089 353 TYQVHLFTIDSS 364 (404)
Q Consensus 353 TiEe~i~~~~~~ 364 (404)
|-+|++-..++.
T Consensus 159 t~~eri~~i~~~ 170 (267)
T 3vnd_A 159 ADADTLKMVSEQ 170 (267)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHh
Confidence 988888888664
No 145
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=31.89 E-value=93 Score=31.91 Aligned_cols=51 Identities=18% Similarity=0.201 Sum_probs=44.1
Q ss_pred CCcHHHHHHHHHHHhhh-CCCeEEEEecchHHHHHHHHHHHhcCCceEeccC
Q psy1089 223 SSGKMIVLNQLLHKLKQ-TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHG 273 (404)
Q Consensus 223 ~S~Kl~~L~~ll~~l~~-~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G 273 (404)
.+||...+..++..+.. .+.+++|.+.....++.|...|...|++++++.+
T Consensus 205 GTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~~~~~~R~~~ 256 (624)
T 2gk6_A 205 GTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCA 256 (624)
T ss_dssp TSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTTTCCEEECCC
T ss_pred CCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhcCCeEEeecc
Confidence 48999999999988876 6889999999999999999999888888877754
No 146
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=31.74 E-value=86 Score=32.17 Aligned_cols=92 Identities=15% Similarity=0.226 Sum_probs=55.7
Q ss_pred cCCcHHHHHHHHHHH-hhhC----CCeEEEEecchHHHHHHHHHHHh----cCCceEeccCCcCHHHHHHHHHHHhCCCC
Q psy1089 222 SSSGKMIVLNQLLHK-LKQT----NHKTLVFSTMVKVLNFIEELCVL----ENYNYYRLHGSIRNEERNDAVQQFNGSTE 292 (404)
Q Consensus 222 ~~S~Kl~~L~~ll~~-l~~~----~~KvlIFs~~~~~l~~L~~~L~~----~gi~~~~i~G~~~~~~R~~~i~~F~~~~~ 292 (404)
..+||-....-.+.. +... +.++||.+.....+.-....+.. .|+.+..++|+.+...+...+. . +
T Consensus 37 TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~---~--~ 111 (696)
T 2ykg_A 37 TGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIV---E--N 111 (696)
T ss_dssp TTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHH---H--T
T ss_pred CCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhc---c--C
Confidence 458998765544443 3322 26899999887766655555543 3899999999886533222221 2 2
Q ss_pred ceEEEeecccccc----C-C-CCCCCCEEEEe
Q psy1089 293 WGVFLLSTRAGGQ----G-L-NLTAADTCILY 318 (404)
Q Consensus 293 ~~vlLis~~a~g~----G-l-nL~~a~~VI~~ 318 (404)
..|+++++...-. | + .+...++||+=
T Consensus 112 ~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViD 143 (696)
T 2ykg_A 112 NDIIILTPQILVNNLKKGTIPSLSIFTLMIFD 143 (696)
T ss_dssp CSEEEECHHHHHHHHHTTSSCCGGGCSEEEEE
T ss_pred CCEEEECHHHHHHHHhcCcccccccccEEEEe
Confidence 5677777765322 2 2 46667777763
No 147
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=31.58 E-value=56 Score=26.42 Aligned_cols=38 Identities=11% Similarity=0.153 Sum_probs=30.4
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhcCCc-eEeccCCcC
Q psy1089 239 QTNHKTLVFSTMVKVLNFIEELCVLENYN-YYRLHGSIR 276 (404)
Q Consensus 239 ~~~~KvlIFs~~~~~l~~L~~~L~~~gi~-~~~i~G~~~ 276 (404)
..+..+||||..-.........|...|+. +..+.|+..
T Consensus 54 ~~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 54 EKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 92 (141)
T ss_dssp CTTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHH
T ss_pred CCCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 45678999999877777888899999996 677888764
No 148
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=31.54 E-value=1.6e+02 Score=21.76 Aligned_cols=61 Identities=18% Similarity=0.226 Sum_probs=44.7
Q ss_pred HHHHHHHHHhhhCCCeEEEEecc--hHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhC
Q psy1089 228 IVLNQLLHKLKQTNHKTLVFSTM--VKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG 289 (404)
Q Consensus 228 ~~L~~ll~~l~~~~~KvlIFs~~--~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~ 289 (404)
.-+.++++.+..+|+..+||.+- .......+..-+..|+.|-.+.+ +.+++-.+.+..|-.
T Consensus 38 qdirdiiksmkdngkplvvfvngasqndvnefqneakkegvsydvlks-tdpeeltqrvreflk 100 (112)
T 2lnd_A 38 QDIRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKS-TDPEELTQRVREFLK 100 (112)
T ss_dssp HHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEEC-CCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhcCcchhhhcc-CCHHHHHHHHHHHHH
Confidence 45677888888899999999875 34455666667788999888765 556666667777754
No 149
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=31.29 E-value=26 Score=27.65 Aligned_cols=37 Identities=11% Similarity=0.139 Sum_probs=30.0
Q ss_pred CCCeEEEEecchHH--HHHHHHHHHhcCCceEeccCCcC
Q psy1089 240 TNHKTLVFSTMVKV--LNFIEELCVLENYNYYRLHGSIR 276 (404)
Q Consensus 240 ~~~KvlIFs~~~~~--l~~L~~~L~~~gi~~~~i~G~~~ 276 (404)
.+.++||+|..... .......|...|+++..+.|+..
T Consensus 70 ~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 70 PAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp TTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 46789999998765 67788889999999878888764
No 150
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=31.14 E-value=1.8e+02 Score=22.26 Aligned_cols=91 Identities=12% Similarity=-0.022 Sum_probs=40.8
Q ss_pred CCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCc----CHHHHHHHHHHHhCCCCceEEEeeccccccCC-CCCCCCE
Q psy1089 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSI----RNEERNDAVQQFNGSTEWGVFLLSTRAGGQGL-NLTAADT 314 (404)
Q Consensus 240 ~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~----~~~~R~~~i~~F~~~~~~~vlLis~~a~g~Gl-nL~~a~~ 314 (404)
.|-.+..+......+..+. ....+..+.++-.+ +.-+-.+.+... +.+.+++++......-. ....+..
T Consensus 28 ~g~~v~~~~~~~~a~~~l~---~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~---~~~~ii~ls~~~~~~~~~~~~~~g~ 101 (140)
T 3h5i_A 28 YGYTVEIALTGEAAVEKVS---GGWYPDLILMDIELGEGMDGVQTALAIQQI---SELPVVFLTAHTEPAVVEKIRSVTA 101 (140)
T ss_dssp TTCEEEEESSHHHHHHHHH---TTCCCSEEEEESSCSSSCCHHHHHHHHHHH---CCCCEEEEESSSSCCCCGGGGGSCE
T ss_pred cCCEEEEecChHHHHHHHh---cCCCCCEEEEeccCCCCCCHHHHHHHHHhC---CCCCEEEEECCCCHHHHHHHHhCCC
Confidence 3555655554444433332 11345555555333 222333333332 34556666644322111 1222333
Q ss_pred EEEecCCCCchhHHHHHHhhhc
Q psy1089 315 CILYDSDWNPQVDIQAEARCHR 336 (404)
Q Consensus 315 VI~~d~~wnp~~~~Qa~gR~~R 336 (404)
.-++.-|+++....+++.++.+
T Consensus 102 ~~~l~KP~~~~~l~~~i~~~l~ 123 (140)
T 3h5i_A 102 YGYVMKSATEQVLITIVEMALR 123 (140)
T ss_dssp EEEEETTCCHHHHHHHHHHHHH
T ss_pred cEEEeCCCCHHHHHHHHHHHHH
Confidence 3445566777766666655544
No 151
>1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A
Probab=30.66 E-value=2.1e+02 Score=24.80 Aligned_cols=50 Identities=18% Similarity=0.072 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHH
Q psy1089 228 IVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEE 279 (404)
Q Consensus 228 ~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~ 279 (404)
....++...+...-.+|-||.+.. .+.+.+.+...++.++.+||..+++.
T Consensus 41 ~~a~~i~~~~~~~~~~VgVfvn~~--~~~i~~~~~~~~ld~vQLHG~e~~~~ 90 (205)
T 1nsj_A 41 EDARRISVELPPFVFRVGVFVNEE--PEKILDVASYVQLNAVQLHGEEPIEL 90 (205)
T ss_dssp HHHHHHHHHSCSSSEEEEEESSCC--HHHHHHHHHHHTCSEEEECSCCCHHH
T ss_pred HHHHHHHHhCCCCCCEEEEEeCCC--HHHHHHHHHhhCCCEEEECCCCCHHH
Confidence 334444444433456888998653 56777777778999999999988754
No 152
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=30.60 E-value=40 Score=26.82 Aligned_cols=38 Identities=8% Similarity=0.034 Sum_probs=31.0
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhcCCc-eEeccCCcC
Q psy1089 239 QTNHKTLVFSTMVKVLNFIEELCVLENYN-YYRLHGSIR 276 (404)
Q Consensus 239 ~~~~KvlIFs~~~~~l~~L~~~L~~~gi~-~~~i~G~~~ 276 (404)
..+.++||||..-.........|+..|+. +..++|+..
T Consensus 84 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 84 QEDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp GSSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 45678999999877777788889999996 778888764
No 153
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=30.53 E-value=88 Score=22.68 Aligned_cols=88 Identities=10% Similarity=0.003 Sum_probs=38.6
Q ss_pred CCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCC---CCceEEEeeccccccCCCCC--CCCE
Q psy1089 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGS---TEWGVFLLSTRAGGQGLNLT--AADT 314 (404)
Q Consensus 240 ~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~---~~~~vlLis~~a~g~GlnL~--~a~~ 314 (404)
.|..+..+......+..+ ....+..+.++-..+...-...+...+.. +.+.+++++...... ... ++.
T Consensus 24 ~g~~v~~~~~~~~~~~~l----~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~--~~~~~g~~- 96 (119)
T 2j48_A 24 AGFKVIWLVDGSTALDQL----DLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGEPPVD--PLLTAQAS- 96 (119)
T ss_dssp TTCEEEEESCHHHHHHHH----HHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESSCCSS--HHHHHHCS-
T ss_pred CCcEEEEecCHHHHHHHH----HhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCCCCch--hhhhcCHH-
Confidence 455565555444434333 23345566555443322222333333322 345555555432221 111 222
Q ss_pred EEEecCCCCchhHHHHHHhhh
Q psy1089 315 CILYDSDWNPQVDIQAEARCH 335 (404)
Q Consensus 315 VI~~d~~wnp~~~~Qa~gR~~ 335 (404)
-++..|.++....+++.++.
T Consensus 97 -~~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 97 -AILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp -EECSSCSTTHHHHHHHHTTC
T ss_pred -HhccCCCCHHHHHHHHHHHh
Confidence 23445666666666665543
No 154
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=28.73 E-value=1.1e+02 Score=27.92 Aligned_cols=90 Identities=9% Similarity=0.033 Sum_probs=56.5
Q ss_pred ccCCcHHHH-HHHHHHHhhhC--CCeEEEEecchHHHHHHHHHHHh-----cCCceEeccCCcCHHHHHHHHHHHhCCCC
Q psy1089 221 VSSSGKMIV-LNQLLHKLKQT--NHKTLVFSTMVKVLNFIEELCVL-----ENYNYYRLHGSIRNEERNDAVQQFNGSTE 292 (404)
Q Consensus 221 ~~~S~Kl~~-L~~ll~~l~~~--~~KvlIFs~~~~~l~~L~~~L~~-----~gi~~~~i~G~~~~~~R~~~i~~F~~~~~ 292 (404)
...|||..+ +..++..+... +.++||.+.......-+...+.. .++.+..+.|+.+..... ...
T Consensus 139 ~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~ 210 (300)
T 3fmo_B 139 QSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ--------KIS 210 (300)
T ss_dssp CTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC--------CCC
T ss_pred CCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh--------cCC
Confidence 356999865 55777766443 34799999998877766666553 256677777765532111 123
Q ss_pred ceEEEeecccc-----c-cCCCCCCCCEEEEe
Q psy1089 293 WGVFLLSTRAG-----G-QGLNLTAADTCILY 318 (404)
Q Consensus 293 ~~vlLis~~a~-----g-~GlnL~~a~~VI~~ 318 (404)
+.+++.++... . ..+++....++|+=
T Consensus 211 ~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlD 242 (300)
T 3fmo_B 211 EQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLD 242 (300)
T ss_dssp CSEEEECHHHHHHHHTTTCCCCGGGCSEEEET
T ss_pred CCEEEECHHHHHHHHHhcCCCChhhceEEEEe
Confidence 56777776653 1 34667788877763
No 155
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.17 E-value=85 Score=24.07 Aligned_cols=46 Identities=9% Similarity=0.077 Sum_probs=33.4
Q ss_pred CeEEEEecchH-HHH------HHHHHHHhcCCceEeccCCcCHHHHHHHHHHH
Q psy1089 242 HKTLVFSTMVK-VLN------FIEELCVLENYNYYRLHGSIRNEERNDAVQQF 287 (404)
Q Consensus 242 ~KvlIFs~~~~-~l~------~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F 287 (404)
.+++||+.... ... .....|...|++|..++=......++.+...+
T Consensus 8 m~V~vy~~~~C~~C~~~~~~~~ak~~L~~~gi~y~~vdI~~~~~~~~~l~~~~ 60 (111)
T 2ct6_A 8 MVIRVFIASSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNV 60 (111)
T ss_dssp CCEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCEEEEETTTCHHHHHHHHHSC
T ss_pred cEEEEEEcCCCCCcccchhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHh
Confidence 46888864432 234 58888999999998888777777777776665
No 156
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=28.16 E-value=3.1e+02 Score=24.83 Aligned_cols=83 Identities=12% Similarity=0.093 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHhCC-CCceEEEeecc--ccccCCCC-------CCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEE
Q psy1089 276 RNEERNDAVQQFNGS-TEWGVFLLSTR--AGGQGLNL-------TAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCI 345 (404)
Q Consensus 276 ~~~~R~~~i~~F~~~-~~~~vlLis~~--a~g~GlnL-------~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~V 345 (404)
+..+-.+.+.+++.. .++.+++++.- ....|+.- .+++-+|+.|.|..-....... +.+. .+..
T Consensus 80 ~~~~~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~--~~~~----gl~~ 153 (271)
T 3nav_A 80 TPDICFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAA--AEKF----GIQP 153 (271)
T ss_dssp CHHHHHHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHH--HHHT----TCEE
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH--HHHc----CCeE
Confidence 333445677888754 45677666422 23445541 3688999999987543333332 2222 3667
Q ss_pred EEEEeCCCHHHHHHHHHhc
Q psy1089 346 YRLVSHSTYQVHLFTIDSS 364 (404)
Q Consensus 346 y~Li~~~TiEe~i~~~~~~ 364 (404)
..|++..|-+|++-+..+.
T Consensus 154 I~lvap~t~~eri~~i~~~ 172 (271)
T 3nav_A 154 IFIAPPTASDETLRAVAQL 172 (271)
T ss_dssp EEEECTTCCHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHH
Confidence 8899999989999888664
No 157
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=27.92 E-value=40 Score=27.40 Aligned_cols=37 Identities=8% Similarity=0.004 Sum_probs=29.9
Q ss_pred CCCeEEEEecch--HHHHHHHHHHHhcCCceEeccCCcC
Q psy1089 240 TNHKTLVFSTMV--KVLNFIEELCVLENYNYYRLHGSIR 276 (404)
Q Consensus 240 ~~~KvlIFs~~~--~~l~~L~~~L~~~gi~~~~i~G~~~ 276 (404)
.+.++||||... .........|+..|+++..+.|+..
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 467899999987 4566778889999999888999764
No 158
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=27.26 E-value=66 Score=24.51 Aligned_cols=38 Identities=16% Similarity=0.138 Sum_probs=30.6
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcC
Q psy1089 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIR 276 (404)
Q Consensus 239 ~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~ 276 (404)
..+.++||||..-.........|...|+....+.|+..
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 45678999999887777888889999986667888864
No 159
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=27.21 E-value=2.2e+02 Score=24.26 Aligned_cols=116 Identities=12% Similarity=0.116 Sum_probs=69.9
Q ss_pred CCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEecC
Q psy1089 241 NHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDS 320 (404)
Q Consensus 241 ~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~d~ 320 (404)
..++++++.+..+.+.++..+...+..+..+.|... +-....... + .++.|++ | .||.+--|...-.+=..+.
T Consensus 4 ~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~--~~v~~a~~~-~-~~~dVII-S--RGgta~~lr~~~~iPVV~I 76 (196)
T 2q5c_A 4 SLKIALISQNENLLNLFPKLALEKNFIPITKTASLT--RASKIAFGL-Q-DEVDAII-S--RGATSDYIKKSVSIPSISI 76 (196)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHH--HHHHHHHHH-T-TTCSEEE-E--EHHHHHHHHTTCSSCEEEE
T ss_pred CCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHH--HHHHHHHHh-c-CCCeEEE-E--CChHHHHHHHhCCCCEEEE
Confidence 458888899999999888888877777766777653 333444444 3 2355554 3 2232222322222444566
Q ss_pred CCCchhHHHHHHhhhccCCC---------------------CcEEEEEEEeCCCHHHHHHHHHh
Q psy1089 321 DWNPQVDIQAEARCHRIGQT---------------------KPVCIYRLVSHSTYQVHLFTIDS 363 (404)
Q Consensus 321 ~wnp~~~~Qa~gR~~R~Gq~---------------------~~V~Vy~Li~~~TiEe~i~~~~~ 363 (404)
+.+..+..+++-++-+.+.+ -++.+|.+...+.+++.+.+..+
T Consensus 77 ~~s~~Dil~al~~a~~~~~kIavvg~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~l~~ 140 (196)
T 2q5c_A 77 KVTRFDTMRAVYNAKRFGNELALIAYKHSIVDKHEIEAMLGVKIKEFLFSSEDEITTLISKVKT 140 (196)
T ss_dssp CCCHHHHHHHHHHHGGGCSEEEEEEESSCSSCHHHHHHHHTCEEEEEEECSGGGHHHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHhhCCcEEEEeCcchhhHHHHHHHHhCCceEEEEeCCHHHHHHHHHHHHH
Confidence 77788888888888877643 12445555555666665555544
No 160
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=27.18 E-value=43 Score=26.90 Aligned_cols=38 Identities=11% Similarity=0.198 Sum_probs=30.7
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhcCCc-eEeccCCcC
Q psy1089 239 QTNHKTLVFSTMVKVLNFIEELCVLENYN-YYRLHGSIR 276 (404)
Q Consensus 239 ~~~~KvlIFs~~~~~l~~L~~~L~~~gi~-~~~i~G~~~ 276 (404)
..+..+||||..-.........|...|+. +..+.|+..
T Consensus 80 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 80 DPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp CTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 35678999999877777788889999994 778889874
No 161
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=26.84 E-value=1.3e+02 Score=23.00 Aligned_cols=62 Identities=16% Similarity=0.160 Sum_probs=41.7
Q ss_pred CCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccc--cccCCC
Q psy1089 241 NHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRA--GGQGLN 308 (404)
Q Consensus 241 ~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a--~g~Gln 308 (404)
+.+++|..........+...|...|+.+.... +. ..++..+..+..+.++|+.... +..|+.
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~---~~---~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~ 68 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGYTVEIAL---TG---EAAVEKVSGGWYPDLILMDIELGEGMDGVQ 68 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEES---SH---HHHHHHHHTTCCCSEEEEESSCSSSCCHHH
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCEEEEec---Ch---HHHHHHHhcCCCCCEEEEeccCCCCCCHHH
Confidence 56899999999999999999999888765433 22 3345555543346677777655 244544
No 162
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=26.70 E-value=1.9e+02 Score=23.79 Aligned_cols=57 Identities=14% Similarity=-0.053 Sum_probs=41.4
Q ss_pred CCCeEEEEec----chHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeec
Q psy1089 240 TNHKTLVFST----MVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLST 300 (404)
Q Consensus 240 ~~~KvlIFs~----~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~ 300 (404)
...++++++- +.--+.++...|+..|+.+..+...+|.++-.+.+.+++ ..++.+|.
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~----~diV~lS~ 77 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQED----VDVIGVSI 77 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTT----CSEEEEEE
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcC----CCEEEEEe
Confidence 4578888864 444578899999999999988888899877666666553 33455554
No 163
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=26.32 E-value=57 Score=25.94 Aligned_cols=37 Identities=11% Similarity=0.131 Sum_probs=29.9
Q ss_pred CCCeEEEEecchHHHHHHHHHHHhcCCc-eEeccCCcC
Q psy1089 240 TNHKTLVFSTMVKVLNFIEELCVLENYN-YYRLHGSIR 276 (404)
Q Consensus 240 ~~~KvlIFs~~~~~l~~L~~~L~~~gi~-~~~i~G~~~ 276 (404)
.+..++|+|..-.........|...|+. +..+.|+..
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 4678999999877777788889999995 777888764
No 164
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=26.09 E-value=43 Score=26.49 Aligned_cols=38 Identities=5% Similarity=-0.099 Sum_probs=30.4
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhcCCc-eEeccCCcC
Q psy1089 239 QTNHKTLVFSTMVKVLNFIEELCVLENYN-YYRLHGSIR 276 (404)
Q Consensus 239 ~~~~KvlIFs~~~~~l~~L~~~L~~~gi~-~~~i~G~~~ 276 (404)
..+.++||||..-.........|...|+. +..+.|+..
T Consensus 80 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 80 GQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp CTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 45678999999877777788888888985 777889874
No 165
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=25.46 E-value=1.9e+02 Score=22.96 Aligned_cols=24 Identities=13% Similarity=0.225 Sum_probs=10.9
Q ss_pred eEEEEecchHHHHHHHHHHHhcCC
Q psy1089 243 KTLVFSTMVKVLNFIEELCVLENY 266 (404)
Q Consensus 243 KvlIFs~~~~~l~~L~~~L~~~gi 266 (404)
|+||.-........+...|+..|+
T Consensus 14 rILiVDD~~~~r~~l~~~L~~~G~ 37 (134)
T 3to5_A 14 KILIVDDFSTMRRIVKNLLRDLGF 37 (134)
T ss_dssp CEEEECSCHHHHHHHHHHHHHTTC
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCC
Confidence 444444444444444444444443
No 166
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=25.31 E-value=3.2e+02 Score=25.26 Aligned_cols=93 Identities=12% Similarity=0.109 Sum_probs=56.5
Q ss_pred ccCCcHHHH-HHHHHHHhhh--CCCeEEEEecchHHHHHHHHHHH----hcCCceEeccCCcCHHHHHHHHHHHhCCCCc
Q psy1089 221 VSSSGKMIV-LNQLLHKLKQ--TNHKTLVFSTMVKVLNFIEELCV----LENYNYYRLHGSIRNEERNDAVQQFNGSTEW 293 (404)
Q Consensus 221 ~~~S~Kl~~-L~~ll~~l~~--~~~KvlIFs~~~~~l~~L~~~L~----~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~ 293 (404)
...|||-.. +.-++..+.. .+.++||.+.....+.-+.+.+. ..++.+..+.|+....... .....+ ..
T Consensus 85 ~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~ 160 (414)
T 3eiq_A 85 QSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEV---QKLQME-AP 160 (414)
T ss_dssp CSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHH---HHHTTT-CC
T ss_pred CCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHH---HHHhcC-CC
Confidence 346899876 4455554433 56789999998877666666554 4477888888887764443 333333 35
Q ss_pred eEEEeecccc-----ccCCCCCCCCEEEE
Q psy1089 294 GVFLLSTRAG-----GQGLNLTAADTCIL 317 (404)
Q Consensus 294 ~vlLis~~a~-----g~GlnL~~a~~VI~ 317 (404)
.++++++... ...+++...+.||+
T Consensus 161 ~iiv~T~~~l~~~l~~~~~~~~~~~~vVi 189 (414)
T 3eiq_A 161 HIIVGTPGRVFDMLNRRYLSPKYIKMFVL 189 (414)
T ss_dssp SEEEECHHHHHHHHHHTSSCSTTCCEEEE
T ss_pred CEEEECHHHHHHHHHcCCcccccCcEEEE
Confidence 6677665432 12344555665554
No 167
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=25.01 E-value=1.3e+02 Score=31.91 Aligned_cols=51 Identities=18% Similarity=0.201 Sum_probs=44.2
Q ss_pred CCcHHHHHHHHHHHhhh-CCCeEEEEecchHHHHHHHHHHHhcCCceEeccC
Q psy1089 223 SSGKMIVLNQLLHKLKQ-TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHG 273 (404)
Q Consensus 223 ~S~Kl~~L~~ll~~l~~-~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G 273 (404)
.+||...+..++..+.. .+.+++|.+.....++.|.+.|...|++++++.+
T Consensus 381 GTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~g~~vvRlg~ 432 (800)
T 2wjy_A 381 GTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCA 432 (800)
T ss_dssp TSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTTTCCEEECCC
T ss_pred CCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHhCcceEeecc
Confidence 48999999999988876 6789999999999999999999888888877754
No 168
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=24.65 E-value=2e+02 Score=20.80 Aligned_cols=89 Identities=11% Similarity=0.020 Sum_probs=42.6
Q ss_pred CCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhC-CCCceEEEeeccccccCCCC--CCCCEEE
Q psy1089 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-STEWGVFLLSTRAGGQGLNL--TAADTCI 316 (404)
Q Consensus 240 ~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~-~~~~~vlLis~~a~g~GlnL--~~a~~VI 316 (404)
.|..+..+......++. +....+..+.++-.++...-...+...+. .+...+++++...... ... .+++.
T Consensus 24 ~~~~v~~~~~~~~a~~~----~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~-~~~~~~g~~~-- 96 (116)
T 3a10_A 24 EGYEIDTAENGEEALKK----FFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAYSHYR-SDMSSWAADE-- 96 (116)
T ss_dssp TTCEEEEESSHHHHHHH----HHHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCGGGG-GCGGGGGSSE--
T ss_pred CCCEEEEeCCHHHHHHH----HhcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECCcchH-HHHHhccccc--
Confidence 45555544443333333 33445666666654443222333333332 2345666666443221 221 13333
Q ss_pred EecCCCCchhHHHHHHhhh
Q psy1089 317 LYDSDWNPQVDIQAEARCH 335 (404)
Q Consensus 317 ~~d~~wnp~~~~Qa~gR~~ 335 (404)
++.-|+++....+++.++.
T Consensus 97 ~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 97 YVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp EEECCSSTHHHHHHHHHHT
T ss_pred eEECCCCHHHHHHHHHHHh
Confidence 3346777777777776654
No 169
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=24.19 E-value=1.2e+02 Score=32.32 Aligned_cols=51 Identities=14% Similarity=0.186 Sum_probs=43.5
Q ss_pred CCcHHHHHHHHHHHhhh-CCCeEEEEecchHHHHHHHHHHHhcCCceEeccC
Q psy1089 223 SSGKMIVLNQLLHKLKQ-TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHG 273 (404)
Q Consensus 223 ~S~Kl~~L~~ll~~l~~-~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G 273 (404)
.+||...+..++..+.. .+.+++|.+.....++.|...|...|+.++++.+
T Consensus 385 GTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~g~~ilR~g~ 436 (802)
T 2xzl_A 385 GTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLKVVRLTA 436 (802)
T ss_dssp TSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHTTCCEEECCC
T ss_pred CCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhhCccEEeecc
Confidence 58999999999887765 6889999999999999999998888888777643
No 170
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=23.06 E-value=75 Score=28.60 Aligned_cols=48 Identities=8% Similarity=-0.022 Sum_probs=33.2
Q ss_pred HHHHHHHHHh-hhCCCeEEEEecchHH-HHHHHHHHHhcCC-ceEeccCCc
Q psy1089 228 IVLNQLLHKL-KQTNHKTLVFSTMVKV-LNFIEELCVLENY-NYYRLHGSI 275 (404)
Q Consensus 228 ~~L~~ll~~l-~~~~~KvlIFs~~~~~-l~~L~~~L~~~gi-~~~~i~G~~ 275 (404)
..+...+..+ ...+..+||||..-.. .......|+..|+ ++..++|+.
T Consensus 72 ~~~~~~~~~~gi~~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~ 122 (280)
T 1urh_A 72 ETFAVAMRELGVNQDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGL 122 (280)
T ss_dssp HHHHHHHHHTTCCTTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHH
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCH
Confidence 3445555554 3457789999987554 6677788888898 466777764
No 171
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=23.06 E-value=1.6e+02 Score=25.69 Aligned_cols=52 Identities=19% Similarity=0.201 Sum_probs=40.8
Q ss_pred cCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCc-eEeccCCcC
Q psy1089 222 SSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYN-YYRLHGSIR 276 (404)
Q Consensus 222 ~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~-~~~i~G~~~ 276 (404)
..+||-.....++... +.+++|++.....+.-+.+.+...++. +..++|+..
T Consensus 117 tG~GKT~~a~~~~~~~---~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~ 169 (237)
T 2fz4_A 117 TGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK 169 (237)
T ss_dssp SSTTHHHHHHHHHHHS---CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB
T ss_pred CCCCHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 3589998877776654 678999999988888888887777888 888888654
No 172
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=22.92 E-value=4.5e+02 Score=25.70 Aligned_cols=78 Identities=13% Similarity=0.143 Sum_probs=49.7
Q ss_pred cCCcHHHHHHHHHHHhhhCCCeEEEEecc---hHHHHHHHHHHHhcCCceEeccCCcCH-HHHHHHHHHHhCCCCceEEE
Q psy1089 222 SSSGKMIVLNQLLHKLKQTNHKTLVFSTM---VKVLNFIEELCVLENYNYYRLHGSIRN-EERNDAVQQFNGSTEWGVFL 297 (404)
Q Consensus 222 ~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~---~~~l~~L~~~L~~~gi~~~~i~G~~~~-~~R~~~i~~F~~~~~~~vlL 297 (404)
..+||-..+..+...+...|.||++++.- ....+.+..+-...|+++...+....+ .--...+..+... +..++|
T Consensus 109 ~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~~~-~~DvVI 187 (443)
T 3dm5_A 109 QGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKSK-GVDIII 187 (443)
T ss_dssp TTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHHHT-TCSEEE
T ss_pred CCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHHhC-CCCEEE
Confidence 67999999999999888889999998732 333445555555667776655433333 3334556666543 245566
Q ss_pred eec
Q psy1089 298 LST 300 (404)
Q Consensus 298 is~ 300 (404)
+.|
T Consensus 188 IDT 190 (443)
T 3dm5_A 188 VDT 190 (443)
T ss_dssp EEC
T ss_pred EEC
Confidence 553
No 173
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=22.19 E-value=57 Score=26.76 Aligned_cols=35 Identities=17% Similarity=0.249 Sum_probs=28.9
Q ss_pred CCeEEEEecch---------HHHHHHHHHHHhcCCceEeccCCc
Q psy1089 241 NHKTLVFSTMV---------KVLNFIEELCVLENYNYYRLHGSI 275 (404)
Q Consensus 241 ~~KvlIFs~~~---------~~l~~L~~~L~~~gi~~~~i~G~~ 275 (404)
+..+||||... .........|...|+++..+.|+.
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~~v~~L~GG~ 136 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGL 136 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTCCEEEETTHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhCCCcEEEeCCcH
Confidence 57899999987 346777888899999998999985
No 174
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=21.44 E-value=2.3e+02 Score=21.00 Aligned_cols=23 Identities=9% Similarity=0.112 Sum_probs=15.5
Q ss_pred EecCCCCchhHHHHHHhhhccCC
Q psy1089 317 LYDSDWNPQVDIQAEARCHRIGQ 339 (404)
Q Consensus 317 ~~d~~wnp~~~~Qa~gR~~R~Gq 339 (404)
++..|.++....+++.++.+.+.
T Consensus 103 ~l~kP~~~~~l~~~i~~~~~~~~ 125 (132)
T 2rdm_A 103 ILEKPFTSAQLITAVSQLLNARE 125 (132)
T ss_dssp EEESSCCHHHHHHHHHHHHHTTC
T ss_pred eEeCCCCHHHHHHHHHHHHhcCC
Confidence 44557777777777777766554
No 175
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=21.29 E-value=1.7e+02 Score=32.02 Aligned_cols=56 Identities=18% Similarity=0.126 Sum_probs=42.4
Q ss_pred ccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhc--CCceEeccCCcC
Q psy1089 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLE--NYNYYRLHGSIR 276 (404)
Q Consensus 221 ~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~--gi~~~~i~G~~~ 276 (404)
...|||-.+..-.+......+.++||.+.....+.-+...|... ++.+..++|+.+
T Consensus 62 pTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l~G~~~ 119 (997)
T 4a4z_A 62 HTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLITGDVQ 119 (997)
T ss_dssp CTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEECSSCE
T ss_pred CCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence 34699997655555555667889999999998888888888754 678888998754
No 176
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=21.12 E-value=6.7e+02 Score=26.75 Aligned_cols=89 Identities=9% Similarity=0.062 Sum_probs=56.8
Q ss_pred ccCCcHHHHH-HHHHHHhhhCCCeEEEEecchHHHHHHH----HHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceE
Q psy1089 221 VSSSGKMIVL-NQLLHKLKQTNHKTLVFSTMVKVLNFIE----ELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGV 295 (404)
Q Consensus 221 ~~~S~Kl~~L-~~ll~~l~~~~~KvlIFs~~~~~l~~L~----~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v 295 (404)
-..+||.-+. +.++... -.|..++|.+.......-+. ......|+++..+.|+++.++|... +. +.|
T Consensus 104 ~TGeGKTlaf~LP~~l~a-L~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~---~~----~dI 175 (844)
T 1tf5_A 104 KTGEGKTLTSTLPVYLNA-LTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREA---YA----ADI 175 (844)
T ss_dssp CTTSCHHHHHHHHHHHHH-TTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHH---HH----SSE
T ss_pred cCCcHHHHHHHHHHHHHH-HcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHh---cC----CCE
Confidence 3468887653 3444222 25778999999877655444 3445679999999999998766543 22 456
Q ss_pred EEeeccccc------------cCCCCCCCCEEEE
Q psy1089 296 FLLSTRAGG------------QGLNLTAADTCIL 317 (404)
Q Consensus 296 lLis~~a~g------------~GlnL~~a~~VI~ 317 (404)
++.++.-.| ..+.+...+++|+
T Consensus 176 v~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVl 209 (844)
T 1tf5_A 176 TYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVI 209 (844)
T ss_dssp EEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEE
T ss_pred EEECchhhhHHHHHHhhhcchhhhcccCCCEEEE
Confidence 666654442 1355667777765
No 177
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=20.96 E-value=4.3e+02 Score=28.28 Aligned_cols=75 Identities=8% Similarity=-0.072 Sum_probs=49.0
Q ss_pred ccCCcHHHHH-HHHHHHhhhCCCeEEEEecchHHHH----HHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceE
Q psy1089 221 VSSSGKMIVL-NQLLHKLKQTNHKTLVFSTMVKVLN----FIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGV 295 (404)
Q Consensus 221 ~~~S~Kl~~L-~~ll~~l~~~~~KvlIFs~~~~~l~----~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v 295 (404)
-..|||..+. ..++... ..|..++|.+....... .+..+....|+++..+.|+++.+.|.... ++.|
T Consensus 95 ~TGsGKTlaf~LP~l~~~-l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~-------~~dI 166 (853)
T 2fsf_A 95 RTGEGKTLTATLPAYLNA-LTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY-------AADI 166 (853)
T ss_dssp CTTSCHHHHHHHHHHHHH-TTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH-------HSSE
T ss_pred cCCchHHHHHHHHHHHHH-HcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc-------CCCE
Confidence 3468997653 3444322 35778999998876554 34444567799999999999986554432 2556
Q ss_pred EEeecccc
Q psy1089 296 FLLSTRAG 303 (404)
Q Consensus 296 lLis~~a~ 303 (404)
++.++.-.
T Consensus 167 vvgTpgrl 174 (853)
T 2fsf_A 167 TYGTNNEY 174 (853)
T ss_dssp EEEEHHHH
T ss_pred EEECCchh
Confidence 77665543
No 178
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=20.96 E-value=2.7e+02 Score=20.94 Aligned_cols=95 Identities=7% Similarity=0.085 Sum_probs=49.7
Q ss_pred CCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhC---CCCceEEEeeccccccC-C-CCCCCCE
Q psy1089 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG---STEWGVFLLSTRAGGQG-L-NLTAADT 314 (404)
Q Consensus 240 ~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~---~~~~~vlLis~~a~g~G-l-nL~~a~~ 314 (404)
.|-.+..+......++.+ ....+..+.++-.++...-...+...+. .+.+.+++++......- . ....+..
T Consensus 29 ~g~~v~~~~~~~~a~~~l----~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~ 104 (140)
T 3grc_A 29 GGFDSDMVHSAAQALEQV----ARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANAREGELEFNSQPLAV 104 (140)
T ss_dssp TTCEEEEECSHHHHHHHH----HHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTHHHHHHHHCCTTTCC
T ss_pred CCCeEEEECCHHHHHHHH----HhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCCChHHHHHHhhhcCC
Confidence 455665555444444333 4456677777755554444455555554 23567777765432111 0 2222222
Q ss_pred EEEecCCCCchhHHHHHHhhhccC
Q psy1089 315 CILYDSDWNPQVDIQAEARCHRIG 338 (404)
Q Consensus 315 VI~~d~~wnp~~~~Qa~gR~~R~G 338 (404)
.-++.-|.++....+++.++.+-+
T Consensus 105 ~~~l~kP~~~~~l~~~i~~~l~~~ 128 (140)
T 3grc_A 105 STWLEKPIDENLLILSLHRAIDNM 128 (140)
T ss_dssp CEEECSSCCHHHHHHHHHHHHHHH
T ss_pred CEEEeCCCCHHHHHHHHHHHHHhc
Confidence 234456777777777777665543
No 179
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Probab=20.89 E-value=1.1e+02 Score=27.24 Aligned_cols=49 Identities=16% Similarity=0.124 Sum_probs=33.2
Q ss_pred HHHHHHHHHh-hhCCCeEEEEecchH-HHHHHHHHHHhcCCc-eEeccCCcC
Q psy1089 228 IVLNQLLHKL-KQTNHKTLVFSTMVK-VLNFIEELCVLENYN-YYRLHGSIR 276 (404)
Q Consensus 228 ~~L~~ll~~l-~~~~~KvlIFs~~~~-~l~~L~~~L~~~gi~-~~~i~G~~~ 276 (404)
..+.+.+..+ ...+..+||+|.... ........|+..|+. +..++|+..
T Consensus 67 ~~~~~~~~~~gi~~~~~vvvyc~~g~~~s~~a~~~L~~~G~~~v~~L~GG~~ 118 (271)
T 1e0c_A 67 EQLESLFGELGHRPEAVYVVYDDEGGGWAGRFIWLLDVIGQQRYHYLNGGLT 118 (271)
T ss_dssp HHHHHHHHHHTCCTTCEEEEECSSSSHHHHHHHHHHHHTTCCCEEEETTHHH
T ss_pred HHHHHHHHHcCCCCCCeEEEEcCCCCccHHHHHHHHHHcCCCCeEEecCCHH
Confidence 3444555554 345778999998764 556677788889985 667887643
No 180
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=20.53 E-value=1.7e+02 Score=28.18 Aligned_cols=53 Identities=19% Similarity=0.186 Sum_probs=43.1
Q ss_pred ccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCc-eEeccCCcC
Q psy1089 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYN-YYRLHGSIR 276 (404)
Q Consensus 221 ~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~-~~~i~G~~~ 276 (404)
...+||.......+... +.++||.+.....+.-+.+.+...|++ +..++|+.+
T Consensus 116 ~TGsGKT~~~l~~i~~~---~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~ 169 (472)
T 2fwr_A 116 PTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK 169 (472)
T ss_dssp CTTSCHHHHHHHHHHHH---CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCB
T ss_pred CCCCCHHHHHHHHHHHc---CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcC
Confidence 34599998877776654 679999999988888888888878998 888988764
No 181
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, transferase structural genomics; 2.10A {Mycobacterium tuberculosis} PDB: 3p3a_A
Probab=20.49 E-value=1.3e+02 Score=27.93 Aligned_cols=48 Identities=8% Similarity=0.091 Sum_probs=34.4
Q ss_pred HHHHHHHHHh-hhCCCeEEEEecchH-HHHHHHHHHHhcCCc-eEeccCCc
Q psy1089 228 IVLNQLLHKL-KQTNHKTLVFSTMVK-VLNFIEELCVLENYN-YYRLHGSI 275 (404)
Q Consensus 228 ~~L~~ll~~l-~~~~~KvlIFs~~~~-~l~~L~~~L~~~gi~-~~~i~G~~ 275 (404)
..+.+.+..+ ...+..+||||.... ........|+..|+. +..++|+.
T Consensus 97 ~~~~~~l~~lgi~~~~~vVvyc~~g~~~a~~a~~~L~~~G~~~V~~L~GG~ 147 (318)
T 3hzu_A 97 EQFAELMDRKGIARDDTVVIYGDKSNWWAAYALWVFTLFGHADVRLLNGGR 147 (318)
T ss_dssp HHHHHHHHHTTCCTTCEEEEECSGGGHHHHHHHHHHHHTTCSCEEEETTHH
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCccHHHHHHHHHHcCCCceEEccCCH
Confidence 3455566654 446788999998765 566677888889985 77788865
No 182
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=20.03 E-value=2.9e+02 Score=20.85 Aligned_cols=93 Identities=4% Similarity=-0.021 Sum_probs=47.2
Q ss_pred CCCeEEEEecchHHHHHHHHHHHh-cCCceEeccCCcC-HHHHHHHHHHHhC---CCCceEEEeeccccccC-CCC--CC
Q psy1089 240 TNHKTLVFSTMVKVLNFIEELCVL-ENYNYYRLHGSIR-NEERNDAVQQFNG---STEWGVFLLSTRAGGQG-LNL--TA 311 (404)
Q Consensus 240 ~~~KvlIFs~~~~~l~~L~~~L~~-~gi~~~~i~G~~~-~~~R~~~i~~F~~---~~~~~vlLis~~a~g~G-lnL--~~ 311 (404)
.|-.+..+......++ .+.. ..+..+.++-.++ ...-...+...+. .+.+.+++++......- ... .+
T Consensus 28 ~~~~v~~~~~~~~a~~----~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g 103 (140)
T 3lua_A 28 GEYDFIEVENLKKFYS----IFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANTPVIIATKSDNPGYRHAALKFK 103 (140)
T ss_dssp CCCEEEEECSHHHHHT----TTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTCCEEEEESCCCHHHHHHHHHSC
T ss_pred cCccEEEECCHHHHHH----HHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCCCEEEEeCCCCHHHHHHHHHcC
Confidence 3556665554433332 2334 5567777777777 6555556655554 23566666664321100 000 12
Q ss_pred CCEEEEecCCCCchhHHHHHHhhhccC
Q psy1089 312 ADTCILYDSDWNPQVDIQAEARCHRIG 338 (404)
Q Consensus 312 a~~VI~~d~~wnp~~~~Qa~gR~~R~G 338 (404)
++. ++.-|.++....+++.++.+-+
T Consensus 104 ~~~--~l~KP~~~~~l~~~i~~~~~~~ 128 (140)
T 3lua_A 104 VSD--YILKPYPTKRLENSVRSVLKIC 128 (140)
T ss_dssp CSE--EEESSCCTTHHHHHHHHHHCC-
T ss_pred CCE--EEECCCCHHHHHHHHHHHHHhc
Confidence 222 3345666777777776665543
Done!