Query psy1089
Match_columns 404
No_of_seqs 244 out of 2472
Neff 7.8
Searched_HMMs 13730
Date Fri Aug 16 21:03:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1089.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1089hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1z3ix1 c.37.1.19 (X:390-735) 100.0 3.7E-46 2.7E-50 365.0 27.0 211 182-402 49-270 (346)
2 d1z5za1 c.37.1.19 (A:663-906) 100.0 5.2E-43 3.8E-47 327.1 21.6 198 182-402 39-237 (244)
3 d2fwra1 c.37.1.19 (A:257-456) 99.9 3.7E-25 2.7E-29 199.2 11.7 121 224-353 78-199 (200)
4 d1s2ma2 c.37.1.19 (A:252-422) 99.9 1.4E-21 1E-25 171.4 13.3 141 215-363 8-148 (171)
5 d1t5ia_ c.37.1.19 (A:) Spliceo 99.8 3.5E-21 2.6E-25 168.3 14.2 138 220-364 8-145 (168)
6 d1wp9a2 c.37.1.19 (A:201-486) 99.8 1.7E-21 1.3E-25 184.3 12.0 134 223-361 141-284 (286)
7 d1fuka_ c.37.1.19 (A:) Initiat 99.8 1.3E-20 9.6E-25 163.7 14.2 124 223-352 11-134 (162)
8 d1hv8a2 c.37.1.19 (A:211-365) 99.8 1.2E-20 8.5E-25 162.8 13.5 135 220-363 10-144 (155)
9 d2j0sa2 c.37.1.19 (A:244-411) 99.8 7.1E-20 5.2E-24 159.9 15.0 132 224-363 19-150 (168)
10 d2rb4a1 c.37.1.19 (A:307-474) 99.8 3.4E-19 2.5E-23 155.6 12.6 131 224-362 17-153 (168)
11 d1oywa3 c.37.1.19 (A:207-406) 99.8 3.9E-18 2.8E-22 152.8 14.3 125 221-351 12-136 (200)
12 d1t5la2 c.37.1.19 (A:415-595) 99.7 7.4E-17 5.4E-21 142.0 13.3 115 224-340 14-133 (181)
13 d1c4oa2 c.37.1.19 (A:410-583) 99.7 2.5E-16 1.8E-20 137.1 13.0 112 227-340 17-133 (174)
14 d1jr6a_ c.37.1.14 (A:) HCV hel 99.4 8.4E-14 6.1E-18 116.8 7.5 99 240-352 34-136 (138)
15 d1gkub2 c.37.1.16 (B:251-498) 99.3 1.1E-13 8.1E-18 127.3 -0.6 105 223-341 10-118 (248)
16 d2p6ra4 c.37.1.19 (A:203-403) 99.3 5.7E-12 4.1E-16 112.2 9.9 121 230-352 29-186 (201)
17 d1a1va2 c.37.1.14 (A:326-624) 99.2 1E-11 7.3E-16 115.2 6.0 108 240-353 35-155 (299)
18 d1gm5a4 c.37.1.19 (A:550-755) 99.1 4.2E-11 3.1E-15 106.5 4.9 118 224-343 12-141 (206)
19 d2eyqa5 c.37.1.19 (A:779-989) 98.8 2.3E-08 1.7E-12 88.2 12.3 121 224-349 15-138 (211)
20 d1tf5a4 c.37.1.19 (A:396-570) 98.7 2.3E-08 1.6E-12 85.6 10.6 120 223-346 16-143 (175)
21 d2bmfa2 c.37.1.14 (A:178-482) 98.6 5.7E-08 4.2E-12 90.0 9.5 98 238-342 175-292 (305)
22 d1yksa2 c.37.1.14 (A:325-623) 98.4 2.6E-07 1.9E-11 86.1 9.0 95 239-340 34-147 (299)
23 d1nkta4 c.37.1.19 (A:397-615) 98.2 6.4E-06 4.7E-10 71.5 12.8 131 222-362 15-198 (219)
24 d1gm5a3 c.37.1.19 (A:286-549) 95.2 0.063 4.6E-06 47.8 10.9 94 223-317 114-211 (264)
25 d2eyqa3 c.37.1.19 (A:546-778) 94.3 0.17 1.2E-05 44.0 11.1 129 222-356 85-217 (233)
26 d2eyqa2 c.37.1.19 (A:349-465) 74.5 2.2 0.00016 32.3 5.3 67 239-319 32-98 (117)
27 d1gkub1 c.37.1.16 (B:1-250) He 64.4 13 0.00094 30.7 8.8 93 222-317 67-168 (237)
28 d1rd5a_ c.1.2.4 (A:) Trp synth 58.5 51 0.0037 27.9 13.0 104 271-388 72-180 (261)
29 d2j0sa1 c.37.1.19 (A:22-243) P 56.9 42 0.003 27.4 10.7 92 222-318 63-166 (222)
30 d1ktea_ c.47.1.1 (A:) Glutared 53.5 26 0.0019 25.1 7.7 61 241-301 11-77 (105)
31 d1hv8a1 c.37.1.19 (A:3-210) Pu 47.5 63 0.0046 25.7 11.2 93 222-320 51-154 (208)
32 d1xpja_ c.108.1.18 (A:) Hypoth 45.5 16 0.0012 27.6 5.4 43 229-271 28-83 (124)
33 d1byka_ c.93.1.1 (A:) Trehalos 42.5 57 0.0042 26.4 9.4 40 252-291 19-58 (255)
34 d1wika_ c.47.1.1 (A:) Thioredo 42.0 31 0.0022 25.0 6.5 61 240-301 13-79 (109)
35 d1em8a_ c.128.1.1 (A:) DNA pol 41.5 19 0.0014 27.8 5.4 38 224-261 19-56 (147)
36 d1qopa_ c.1.2.4 (A:) Trp synth 40.6 66 0.0048 27.2 9.5 130 229-364 3-169 (267)
37 d1yt8a4 c.46.1.2 (A:243-372) T 39.0 14 0.001 27.6 4.2 38 239-276 78-115 (130)
38 d1okkd2 c.37.1.10 (D:97-303) G 38.5 93 0.0067 25.0 10.5 56 222-277 15-73 (207)
39 d1t1va_ c.47.1.14 (A:) SH3BGRL 34.7 56 0.0041 22.5 6.8 57 243-299 3-67 (93)
40 d2a9pa1 c.23.1.1 (A:2-118) DNA 34.2 22 0.0016 25.9 4.5 59 239-301 22-80 (117)
41 d1wp9a1 c.37.1.19 (A:1-200) pu 34.0 66 0.0048 24.9 8.0 92 222-319 32-133 (200)
42 d1tq1a_ c.46.1.3 (A:) Thiosulf 33.4 13 0.00094 27.3 3.0 38 239-276 70-108 (119)
43 d1gmxa_ c.46.1.3 (A:) Sulfurtr 32.8 25 0.0018 25.1 4.6 46 230-276 48-94 (108)
44 d1ls1a2 c.37.1.10 (A:89-295) G 32.7 97 0.0071 24.8 8.9 58 222-279 19-79 (207)
45 d2qy9a2 c.37.1.10 (A:285-495) 31.3 1.2E+02 0.009 24.3 9.5 79 221-300 17-99 (211)
46 d1vmaa2 c.37.1.10 (A:82-294) G 30.3 1.2E+02 0.0085 24.5 9.0 57 221-277 19-78 (213)
47 d1v5xa_ c.1.2.4 (A:) N-(5'phos 29.1 57 0.0042 26.0 6.8 51 229-281 41-91 (200)
48 d1h75a_ c.47.1.1 (A:) Glutared 28.7 72 0.0052 20.8 7.0 56 243-300 2-58 (76)
49 d1v65a_ a.212.1.1 (A:) hypothe 28.7 15 0.0011 24.3 2.3 19 30-48 22-40 (64)
50 d1peya_ c.23.1.1 (A:) Sporulat 28.4 31 0.0023 25.1 4.5 57 240-300 24-81 (119)
51 d1qxna_ c.46.1.3 (A:) Polysulf 28.2 19 0.0014 27.2 3.2 37 239-275 80-117 (137)
52 d1urha2 c.46.1.2 (A:149-268) 3 26.7 37 0.0027 24.3 4.7 38 239-276 80-118 (120)
53 d1mvoa_ c.23.1.1 (A:) PhoP rec 25.7 58 0.0042 23.4 5.7 89 240-335 25-118 (121)
54 d2obba1 c.108.1.25 (A:1-122) H 25.4 41 0.003 24.9 4.7 42 230-271 26-68 (122)
55 d1fova_ c.47.1.1 (A:) Glutared 24.3 86 0.0063 20.6 6.0 57 243-300 2-59 (82)
56 d1e0ca2 c.46.1.2 (A:136-271) S 24.2 45 0.0033 24.9 4.8 46 230-275 76-123 (136)
57 d1kgsa2 c.23.1.1 (A:2-123) Pho 22.7 1.2E+02 0.009 21.4 8.5 91 239-336 23-118 (122)
58 d1ccwa_ c.23.6.1 (A:) Glutamat 22.4 82 0.0059 23.5 6.1 57 241-301 3-63 (137)
59 d1r7ha_ c.47.1.1 (A:) Glutared 22.4 94 0.0068 19.9 6.8 57 243-301 2-59 (74)
60 d1mb3a_ c.23.1.1 (A:) Cell div 21.8 90 0.0066 22.2 6.1 92 239-336 23-120 (123)
61 d1wrba1 c.37.1.19 (A:164-401) 21.6 1.9E+02 0.014 23.2 8.9 92 222-318 67-179 (238)
62 d1yt8a1 c.46.1.2 (A:107-242) T 21.5 59 0.0043 24.1 5.0 43 233-275 71-116 (136)
63 d2bmfa2 c.37.1.14 (A:178-482) 20.7 1.1E+02 0.0081 25.0 7.4 49 221-269 17-66 (305)
No 1
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}
Probab=100.00 E-value=3.7e-46 Score=364.99 Aligned_cols=211 Identities=29% Similarity=0.450 Sum_probs=174.4
Q ss_pred hhHHHHHHHHHHHhCCCCccccCCcccCCC---------cccccccccccCCcHHHHHHHHHHHhh-hCCCeEEEEecch
Q psy1089 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGK---------KEMVCDENIVSSSGKMIVLNQLLHKLK-QTNHKTLVFSTMV 251 (404)
Q Consensus 182 ~~l~~~l~~Lr~ic~hP~L~~~~~~~~~~~---------~~~~~~~~~~~~S~Kl~~L~~ll~~l~-~~~~KvlIFs~~~ 251 (404)
.++++.+++||++|+||+|+.......... ............|+|+..|.+++..+. ..|+|+||||+|+
T Consensus 49 ~~~L~~l~~LRkiCnHP~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~ll~~~~~~~g~KvlIFs~~~ 128 (346)
T d1z3ix1 49 VSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYT 128 (346)
T ss_dssp HHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCH
T ss_pred HHHHHHHHHHHHHhCCHHHhhhhhccccccccchhhhccccccccccccccCHHHHHHHHHHHHHHHhcCCceeEEeehh
Confidence 356788999999999999875421111100 011112223456999999999998874 5789999999999
Q ss_pred HHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCC-CceEEEeeccccccCCCCCCCCEEEEecCCCCchhHHHH
Q psy1089 252 KVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGST-EWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQA 330 (404)
Q Consensus 252 ~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~-~~~vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa 330 (404)
.++++|+.+|...|+++.+++|+++..+|+.+++.|+++. ...|+|+++++||.||||++|++||+||++|||..+.||
T Consensus 129 ~~ld~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~vlLls~~agg~GlnL~~a~~vi~~d~~wnp~~~~Qa 208 (346)
T d1z3ix1 129 QTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQA 208 (346)
T ss_dssp HHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHH
T ss_pred hhhHHHHHHHhhhhccccccccchhHHHHHHHHHhhhcccccceeeeecchhhhhccccccceEEEEecCCCccchHhHh
Confidence 9999999999999999999999999999999999999876 456999999999999999999999999999999999999
Q ss_pred HHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHhcCCccccchhhhcccccccccccCcceecccHHHHHhhh
Q psy1089 331 EARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDSSGSVSWSSQSVKEKLPIGFMCVTGSFLKSSSFFTYLQTY 402 (404)
Q Consensus 331 ~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~~K~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 402 (404)
+||+||+||+++|+||+|+++|||||+||+++..| ..+...++....+....+|.+.+..||
T Consensus 209 ~~R~~R~GQ~~~V~v~rli~~~TiEe~i~~~~~~K----------~~l~~~v~~~~~~~~~~~~~~~l~~lf 270 (346)
T d1z3ix1 209 MARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHK----------KALSSCVVDEEQDVERHFSLGELRELF 270 (346)
T ss_dssp HTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHH----------HHTSCCCCSCSSSCCCSSCHHHHHHHT
T ss_pred hhcccccCCCCceEEEEEEeCCCHHHHHHHHHHHH----------HHHHHHHhCCchhhhhcCCHHHHHHHh
Confidence 99999999999999999999999999999997766 344445555555566667777766654
No 2
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}
Probab=100.00 E-value=5.2e-43 Score=327.12 Aligned_cols=198 Identities=27% Similarity=0.382 Sum_probs=158.1
Q ss_pred hhHHHHHHHHHHHhCCCCccccCCcccCCCcccccccccccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHH
Q psy1089 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELC 261 (404)
Q Consensus 182 ~~l~~~l~~Lr~ic~hP~L~~~~~~~~~~~~~~~~~~~~~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L 261 (404)
..++..+++|||+|+||+++.... .....|+|+..|.+++.++...|+|+||||+|...+++|+..|
T Consensus 39 ~~iL~~l~~Lrqic~hP~l~~~~~-------------~~~~~S~K~~~l~~~l~~~~~~g~kviIFs~~~~~~~~l~~~l 105 (244)
T d1z5za1 39 GMILSTLLKLKQIVDHPALLKGGE-------------QSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNII 105 (244)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHCSC-------------CCSTTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcCCccccccc-------------cchhhhhHHHHHHHHHHhhcccccceEEEeeceehHHHHHHHH
Confidence 457788999999999999876532 2244689999999999998889999999999999999999999
Q ss_pred Hh-cCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCC
Q psy1089 262 VL-ENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQT 340 (404)
Q Consensus 262 ~~-~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~ 340 (404)
.. .|+++.+++|+++..+|++++++|++++++.++++++++||.|+||+.|++||++|++|||..+.||+||+||+||+
T Consensus 106 ~~~~~~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vll~~~~~~g~Glnl~~a~~vi~~~~~wn~~~~~Qa~~R~~R~Gq~ 185 (244)
T d1z5za1 106 EKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQT 185 (244)
T ss_dssp HHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC-------------
T ss_pred HhhccceEEEEecccchhccchhhhhhhccccchhccccccccccccccchhhhhhhcCchhhhHHHhhhcceeeecCCC
Confidence 75 48999999999999999999999999888899999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEEeCCCHHHHHHHHHhcCCccccchhhhcccccccccccCcceecccHHHHHhhh
Q psy1089 341 KPVCIYRLVSHSTYQVHLFTIDSSGSVSWSSQSVKEKLPIGFMCVTGSFLKSSSFFTYLQTY 402 (404)
Q Consensus 341 ~~V~Vy~Li~~~TiEe~i~~~~~~K~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 402 (404)
++|+||+|++.||+||.|++++..|. .+...++......+..++.+.+..++
T Consensus 186 ~~v~i~~l~~~~Tiee~i~~~~~~K~----------~~~~~~~~~~~~~~~~~~~~~l~~l~ 237 (244)
T d1z5za1 186 RNVIVHKLISVGTLEEKIDQLLAFKR----------SLFKDIISSGDSWITELSTEELRKVI 237 (244)
T ss_dssp -CCEEEEEEETTSHHHHHHHHHHHCH----------HHHTTGGGGTTHHHHTSCHHHHHHHH
T ss_pred CceEEEEEeeCCCHHHHHHHHHHHHH----------HHHHHHHhCChhhhhcCCHHHHHHHH
Confidence 99999999999999999999988774 23334444444555556666665543
No 3
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.91 E-value=3.7e-25 Score=199.15 Aligned_cols=121 Identities=18% Similarity=0.320 Sum_probs=109.3
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecccc
Q psy1089 224 SGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAG 303 (404)
Q Consensus 224 S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~ 303 (404)
++|+..|.+++... .++|+||||++...++.|.+.| .+..+||.++..+|+.+++.|++++ +.| |++++++
T Consensus 78 ~~K~~~l~~ll~~~--~~~k~lvf~~~~~~~~~l~~~l-----~~~~i~g~~~~~~R~~~l~~F~~~~-~~v-Lv~~~~~ 148 (200)
T d2fwra1 78 KNKIRKLREILERH--RKDKIIIFTRHNELVYRISKVF-----LIPAITHRTSREEREEILEGFRTGR-FRA-IVSSQVL 148 (200)
T ss_dssp SHHHHHHHHHHHHT--SSSCBCCBCSCHHHHHHHHHHT-----TCCBCCSSSCSHHHHTHHHHHHHSS-CSB-CBCSSCC
T ss_pred HHHHHHHHHHHHhC--CCCcEEEEeCcHHHHHHHHhhc-----CcceeeCCCCHHHHHHHHHHhhcCC-eee-eeecchh
Confidence 67999999999864 5789999999999999998876 3456899999999999999999885 555 5688999
Q ss_pred ccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCC-cEEEEEEEeCCC
Q psy1089 304 GQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTK-PVCIYRLVSHST 353 (404)
Q Consensus 304 g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~-~V~Vy~Li~~~T 353 (404)
++|+|++.+++||+++++|||..+.|++||++|.||.+ .|.||.||++||
T Consensus 149 ~~Gidl~~~~~vi~~~~~~s~~~~~Q~iGR~~R~~~~k~~~~i~~~v~~~T 199 (200)
T d2fwra1 149 DEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGT 199 (200)
T ss_dssp CSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSC
T ss_pred hcccCCCCCCEEEEeCCCCCHHHHHHHHHhcCCCCCCCcEEEEEEEecCCC
Confidence 99999999999999999999999999999999999965 699999999998
No 4
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.86 E-value=1.4e-21 Score=171.40 Aligned_cols=141 Identities=17% Similarity=0.259 Sum_probs=122.9
Q ss_pred ccccccccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCce
Q psy1089 215 VCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWG 294 (404)
Q Consensus 215 ~~~~~~~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~ 294 (404)
.+....+....|+..|.++|+.. .++|+||||++...++.+...|...|+.+..+||+++..+|..++..|+++. ..
T Consensus 8 ~q~yi~v~~~~K~~~L~~ll~~~--~~~k~iVF~~~~~~~~~l~~~L~~~g~~~~~~h~~~~~~~r~~~~~~f~~~~-~~ 84 (171)
T d1s2ma2 8 TQYYAFVEERQKLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGK-VR 84 (171)
T ss_dssp EEEEEECCGGGHHHHHHHHHHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTS-SS
T ss_pred EEEEEEcCHHHHHHHHHHHHHhC--CCCceEEEEeeeehhhHhHHhhhcccccccccccccchhhhhhhhhhcccCc-cc
Confidence 34444566678999999999864 6789999999999999999999999999999999999999999999999985 33
Q ss_pred EEEeeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHh
Q psy1089 295 VFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDS 363 (404)
Q Consensus 295 vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~ 363 (404)
+|++|+++++|+|++.+++||+||+||++..|.||+||+||.|+.. .++.|++++ |..++...+
T Consensus 85 -ilv~Td~~~~Gid~~~v~~VI~~d~p~~~~~y~qr~GR~gR~g~~g--~~i~~v~~~--e~~~~~~i~ 148 (171)
T d1s2ma2 85 -TLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLG--LAINLINWN--DRFNLYKIE 148 (171)
T ss_dssp -EEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCE--EEEEEECGG--GHHHHHHHH
T ss_pred -cccchhHhhhccccceeEEEEecCCcchHHHHHHHhhhcccCCCcc--EEEEEeCHH--HHHHHHHHH
Confidence 6778899999999999999999999999999999999999999875 567788876 556655544
No 5
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.85 E-value=3.5e-21 Score=168.33 Aligned_cols=138 Identities=21% Similarity=0.271 Sum_probs=120.6
Q ss_pred cccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEee
Q psy1089 220 IVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLS 299 (404)
Q Consensus 220 ~~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis 299 (404)
.+..+.|+..|.+++..+ .++|+||||++...++.|...|...|+.+..+||+++.++|..+++.|+++. +. +|++
T Consensus 8 ~~~~~~K~~~L~~ll~~~--~~~k~iIF~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~l~~F~~g~-~~-iLv~ 83 (168)
T d1t5ia_ 8 KLKDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ-RR-ILVA 83 (168)
T ss_dssp ECCGGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS-CS-EEEE
T ss_pred EeChHHHHHHHHHHHHhC--CCCeEEEEEeeeecchhhhhhhccccccccccccccchhhhhhhhhhhcccc-ce-eeec
Confidence 345688999999999876 5679999999999999999999999999999999999999999999999985 44 4778
Q ss_pred ccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHhc
Q psy1089 300 TRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDSS 364 (404)
Q Consensus 300 ~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~~ 364 (404)
|+++++|+|++.+++||+||+||++..|.|++||+||.|++. .+|.|++.. -|..++..++.
T Consensus 84 T~~~~~Gid~~~~~~vi~~~~p~~~~~yiqr~GR~gR~g~~g--~~i~l~~~~-~~~~~~~~i~~ 145 (168)
T d1t5ia_ 84 TNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKG--LAITFVSDE-NDAKILNDVQD 145 (168)
T ss_dssp SSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCC--EEEEEECSH-HHHHHHHHHHH
T ss_pred cccccchhhcccchhhhhhhcccchhhHhhhhhhcccCCCcc--EEEEEECch-HHHHHHHHHHH
Confidence 899999999999999999999999999999999999999876 446666653 46667666543
No 6
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=99.85 E-value=1.7e-21 Score=184.25 Aligned_cols=134 Identities=20% Similarity=0.298 Sum_probs=117.3
Q ss_pred CCcHHHHHHHHHHHhh--hCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCC--------cCHHHHHHHHHHHhCCCC
Q psy1089 223 SSGKMIVLNQLLHKLK--QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGS--------IRNEERNDAVQQFNGSTE 292 (404)
Q Consensus 223 ~S~Kl~~L~~ll~~l~--~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~--------~~~~~R~~~i~~F~~~~~ 292 (404)
.++|+..|.++|..+. ..+.|+||||++...++.+...|...|+++..++|. ++..+|..+++.|++++
T Consensus 141 ~~pK~~~l~~~l~~~~~~~~~~k~iiF~~~~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~~g~- 219 (286)
T d1wp9a2 141 DHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGE- 219 (286)
T ss_dssp SCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTS-
T ss_pred CCcHHHHHHHHHHHHHHhCCCCcEEEEeCcHHhHHHHHHHHHHcCCceEEeeccccccccchhchHHHHHHHHHHHcCC-
Confidence 3689999999998764 467899999999999999999999999999999875 44457899999999985
Q ss_pred ceEEEeeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHH
Q psy1089 293 WGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTI 361 (404)
Q Consensus 293 ~~vlLis~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~ 361 (404)
+. +|++|+++|+|||+++|++||+||+||||..+.||+||++|. +++.+|.|+++||+||.+|..
T Consensus 220 ~~-vLv~T~~~~~Gld~~~~~~Vi~~d~~~~~~~~~Qr~GR~gR~---~~~~~~~l~~~~~~ee~~~~~ 284 (286)
T d1wp9a2 220 FN-VLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRH---MPGRVIILMAKGTRDEAYYWS 284 (286)
T ss_dssp CS-EEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSC---CCSEEEEEEETTSHHHHHHHH
T ss_pred Cc-EEEEccceeccccCCCCCEEEEeCCCCCHHHHHHHHHhCCCC---CCCEEEEEEeCCCHHHHHHhh
Confidence 45 577889999999999999999999999999999999988884 467899999999999988764
No 7
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.84 E-value=1.3e-20 Score=163.68 Aligned_cols=124 Identities=16% Similarity=0.262 Sum_probs=108.8
Q ss_pred CCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccc
Q psy1089 223 SSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRA 302 (404)
Q Consensus 223 ~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a 302 (404)
...|+..|.++++.. .+.|+||||++...++.+...|...|+++..++|+++..+|..+++.|+.+. .. +|++|++
T Consensus 11 ~e~K~~~L~~ll~~~--~~~k~iIF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~l~~f~~~~-~~-iLv~Tdv 86 (162)
T d1fuka_ 11 EEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS-SR-ILISTDL 86 (162)
T ss_dssp GGGHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS-CS-EEEEEGG
T ss_pred cHHHHHHHHHHHHhC--CCCcEEEEEEEEchHHHHHHHHhhcCceEEEeccCCchhhHHHHHHHHhhcc-cc-eeecccc
Confidence 356999999999865 5679999999999999999999999999999999999999999999999985 33 6788999
Q ss_pred cccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCC
Q psy1089 303 GGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHS 352 (404)
Q Consensus 303 ~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~ 352 (404)
+++|+|++.+++||+||+||++..|.||+||++|.|+.. .++.+++.+
T Consensus 87 ~~rGiDi~~v~~VI~~d~P~~~~~yihR~GR~gR~g~~g--~~i~~~~~~ 134 (162)
T d1fuka_ 87 LARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKG--VAINFVTNE 134 (162)
T ss_dssp GTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----C--EEEEEEETT
T ss_pred ccccccCCCceEEEEeccchhHHHHHhhccccccCCCcc--EEEEEcCHH
Confidence 999999999999999999999999999999999999865 667777776
No 8
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=99.83 E-value=1.2e-20 Score=162.76 Aligned_cols=135 Identities=16% Similarity=0.255 Sum_probs=116.6
Q ss_pred cccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEee
Q psy1089 220 IVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLS 299 (404)
Q Consensus 220 ~~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis 299 (404)
.+....|+..|.++|.. .+.|+||||++...++.+...|...|+.+..++|.++..+|..++++|++++ .. +|++
T Consensus 10 ~v~~~~K~~~L~~ll~~---~~~k~IIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~~~-~~-ilv~ 84 (155)
T d1hv8a2 10 EVNENERFEALCRLLKN---KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKK-IR-ILIA 84 (155)
T ss_dssp ECCGGGHHHHHHHHHCS---TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTS-SS-EEEE
T ss_pred EeChHHHHHHHHHHHcc---CCCCEEEEECchHHHHHHHhhhcccccccccccccchhhhhhhhhhhhhccc-ce-eeee
Confidence 34456799999988863 4679999999999999999999999999999999999999999999999996 33 6778
Q ss_pred ccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHh
Q psy1089 300 TRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDS 363 (404)
Q Consensus 300 ~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~ 363 (404)
|+++++|+|++.+++||+||+|||+..|.|++||++|.|+.. .++.++.+. |+.+++..+
T Consensus 85 T~~~~~Gid~~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~g--~~i~~~~~~--d~~~~~~i~ 144 (155)
T d1hv8a2 85 TDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKG--KAISIINRR--EYKKLRYIE 144 (155)
T ss_dssp CTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCC--EEEEEECTT--SHHHHHHHH
T ss_pred hhHHhhhhhhccCcEEEEecCCCCHHHHHHHHHhcCcCCCCc--eEEEEEchH--HHHHHHHHH
Confidence 899999999999999999999999999999999999999875 456667665 555555443
No 9
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.82 E-value=7.1e-20 Score=159.92 Aligned_cols=132 Identities=20% Similarity=0.327 Sum_probs=117.7
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecccc
Q psy1089 224 SGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAG 303 (404)
Q Consensus 224 S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~ 303 (404)
..|+..|.+++... .+.|+||||++...++.+...|...|+++..+||+++..+|..+++.|+++. .. +|++|+++
T Consensus 19 ~~K~~~L~~ll~~~--~~~k~iiF~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~fk~g~-~~-iLv~Td~~ 94 (168)
T d2j0sa2 19 EWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGA-SR-VLISTDVW 94 (168)
T ss_dssp THHHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTS-SC-EEEECGGG
T ss_pred HHHHHHHHHHHHhC--CCCceEEEeeeHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHhcCC-cc-EEeccchh
Confidence 45999999999865 5679999999999999999999999999999999999999999999999986 33 68889999
Q ss_pred ccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHHh
Q psy1089 304 GQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTIDS 363 (404)
Q Consensus 304 g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~~ 363 (404)
++|+|++.+++||+||+||++..|.||+||++|.|+.. .+|.|++++ |..+++..+
T Consensus 95 ~rGiDi~~v~~VIn~d~P~~~~~yihR~GR~gR~g~~G--~~i~~~~~~--d~~~~~~i~ 150 (168)
T d2j0sa2 95 ARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKG--VAINFVKND--DIRILRDIE 150 (168)
T ss_dssp SSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCE--EEEEEEEGG--GHHHHHHHH
T ss_pred cccccccCcceEEEecCCcCHHHHHhhhccccccCCCc--EEEEEECHH--HHHHHHHHH
Confidence 99999999999999999999999999999999999764 567778776 555665544
No 10
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.79 E-value=3.4e-19 Score=155.56 Aligned_cols=131 Identities=13% Similarity=0.235 Sum_probs=109.4
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecccc
Q psy1089 224 SGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAG 303 (404)
Q Consensus 224 S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~ 303 (404)
..|+..|.++++.. ..+++||||++....+.|...|...|+++..+||+++..+|..++++|+++. .. +|++|+++
T Consensus 17 ~~K~~~L~~ll~~~--~~~~~lIF~~~~~~~~~l~~~l~~~~~~~~~~hg~~~~~~R~~~~~~F~~g~-~~-ilv~Td~~ 92 (168)
T d2rb4a1 17 KDKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGK-EK-VLITTNVC 92 (168)
T ss_dssp HHHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTS-CS-EEEECCSC
T ss_pred HHHHHHHHHHHHhC--CCCcEEEEcCHHHHHHHHHHHHHhcCCcceecccchhhHHHHHHhhhhcCCc-ee-eeechhhh
Confidence 46888999988643 5679999999999999999999999999999999999999999999999985 44 56799999
Q ss_pred ccCCCCCCCCEEEEecCCCC------chhHHHHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHH
Q psy1089 304 GQGLNLTAADTCILYDSDWN------PQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTID 362 (404)
Q Consensus 304 g~GlnL~~a~~VI~~d~~wn------p~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~ 362 (404)
++|+|++.+++||+||+||+ +..|.||+||++|.|+. ..+|.|++.+ |+..+..+
T Consensus 93 ~~Gid~~~v~~Vi~yd~P~~~~~~~~~~~yihR~GR~gR~g~~--g~~i~~~~~~--d~~~l~~i 153 (168)
T d2rb4a1 93 ARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKK--GLAFNMIEVD--ELPSLMKI 153 (168)
T ss_dssp CTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CC--EEEEEEECGG--GHHHHHHH
T ss_pred hhhhccccccEEEeecCCCcccccCCHHHHHHHhhhcccCCCc--eEEEEEEcHH--HHHHHHHH
Confidence 99999999999999999995 56799999999999964 5678888877 44444443
No 11
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]}
Probab=99.75 E-value=3.9e-18 Score=152.84 Aligned_cols=125 Identities=14% Similarity=0.142 Sum_probs=110.5
Q ss_pred ccCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeec
Q psy1089 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLST 300 (404)
Q Consensus 221 ~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~ 300 (404)
.....|+..|.++|... .+.++||||++....+.+...|...|+.+..+||+++.++|.++++.|+++. .. +|++|
T Consensus 12 ~~~~~k~~~L~~~l~~~--~~~~~IIF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~-~~-ilvaT 87 (200)
T d1oywa3 12 MEKFKPLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDD-LQ-IVVAT 87 (200)
T ss_dssp EECSSHHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS-CS-EEEEC
T ss_pred EcCCcHHHHHHHHHHhc--CCCCEEEEEeeehhhHHhhhhhccCCceeEEecCCCcHHHHHHHHHHHhccc-ce-EEEec
Confidence 44466899888888754 5779999999999999999999999999999999999999999999999985 33 67888
Q ss_pred cccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeC
Q psy1089 301 RAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSH 351 (404)
Q Consensus 301 ~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~ 351 (404)
+++|+|||++.+++||+||+|+++..|.|++||++|.|+.. ..+-|+++
T Consensus 88 d~~~~GiD~p~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g--~ai~~~~~ 136 (200)
T d1oywa3 88 VAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPA--EAMLFYDP 136 (200)
T ss_dssp TTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCE--EEEEEECH
T ss_pred chhhhccCCCCCCEEEECCCccchHHHHHHhhhhhcCCCCc--eEEEecCH
Confidence 99999999999999999999999999999999999999754 44445544
No 12
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}
Probab=99.69 E-value=7.4e-17 Score=141.99 Aligned_cols=115 Identities=18% Similarity=0.219 Sum_probs=99.1
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecccc
Q psy1089 224 SGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAG 303 (404)
Q Consensus 224 S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~ 303 (404)
.+++..|...+....+.+.++||||+.....+.+...|...|+++..+||++++.+|.+++++|+++. +. +|++|+++
T Consensus 14 ~~qvd~ll~~i~~~~~~~~~~iif~~~~~~~~~~~~~l~~~g~~~~~~hg~~~~~eR~~~l~~Fr~g~-~~-vLVaTdv~ 91 (181)
T d1t5la2 14 KGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGK-YD-VLVGINLL 91 (181)
T ss_dssp TTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHHTS-CS-EEEESCCC
T ss_pred CCcHHHHHHHHHHHHhcCCeEEEEeehhhhhHHHHHHHHhCCcceeEecCCccHHHHHHHHHHHHCCC-CC-EEEehhHH
Confidence 34554455445555567889999999999999999999999999999999999999999999999995 33 67788999
Q ss_pred ccCCCCCCCCEEEEecCCC-----CchhHHHHHHhhhccCCC
Q psy1089 304 GQGLNLTAADTCILYDSDW-----NPQVDIQAEARCHRIGQT 340 (404)
Q Consensus 304 g~GlnL~~a~~VI~~d~~w-----np~~~~Qa~gR~~R~Gq~ 340 (404)
++|||++.+++||+||+|- ++..|.||+||++|.|..
T Consensus 92 ~rGiDip~v~~VI~~d~p~~~~~~s~~~yi~R~GRagR~g~~ 133 (181)
T d1t5la2 92 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNANG 133 (181)
T ss_dssp SSSCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTC
T ss_pred HccCCCCCCCEEEEecCCcccccccHHHHHHHHHhhccccCc
Confidence 9999999999999999994 577888999999988854
No 13
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}
Probab=99.66 E-value=2.5e-16 Score=137.06 Aligned_cols=112 Identities=16% Similarity=0.201 Sum_probs=97.3
Q ss_pred HHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccC
Q psy1089 227 MIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQG 306 (404)
Q Consensus 227 l~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~G 306 (404)
+.-|.+.+.+....|+++||||......+.|...|...|+.+..+||+++..+|.+++++|.+|. .. +|+++.++++|
T Consensus 17 v~dll~~i~~~~~~g~r~lvfc~t~~~~~~l~~~L~~~Gi~a~~~Hg~~~~~eR~~~l~~F~~G~-~~-vLVaT~v~~~G 94 (174)
T d1c4oa2 17 ILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGH-YD-CLVGINLLREG 94 (174)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTS-CS-EEEESCCCCTT
T ss_pred HHHHHHHHHHHHhcCCcEEEEEcchhHHHHHHHHHHhcCCceEEEecccchHHHHHHHHHHHCCC-eE-EEEeeeeeeee
Confidence 33344444444568999999999999999999999999999999999999999999999999996 44 67888999999
Q ss_pred CCCCCCCEEEEecCCC-----CchhHHHHHHhhhccCCC
Q psy1089 307 LNLTAADTCILYDSDW-----NPQVDIQAEARCHRIGQT 340 (404)
Q Consensus 307 lnL~~a~~VI~~d~~w-----np~~~~Qa~gR~~R~Gq~ 340 (404)
+|++.+++||+||++- ++..|.|++||++|.|..
T Consensus 95 iDip~V~~Vi~~~~~~~~~~~~~~~~iq~~GR~gR~~~g 133 (174)
T d1c4oa2 95 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNARG 133 (174)
T ss_dssp CCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTC
T ss_pred ccCCCCcEEEEeccccccccchhHHHHHHhhhhhhcCCC
Confidence 9999999999999765 446799999999998763
No 14
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=99.43 E-value=8.4e-14 Score=116.78 Aligned_cols=99 Identities=19% Similarity=0.196 Sum_probs=85.3
Q ss_pred CCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEec
Q psy1089 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYD 319 (404)
Q Consensus 240 ~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~d 319 (404)
.+.++||||+....++.|...|...|+++..+||+++.+ .|+++. ..+|++|+++++|+| ...+.||+++
T Consensus 34 ~~~k~IVFc~t~~~ae~la~~L~~~G~~~~~~H~~~~~~-------~~~~~~--~~vlvaTd~~~~GiD-~~v~~Vi~~~ 103 (138)
T d1jr6a_ 34 KGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVS-------VIPTNG--DVVVVATDALMTGFT-GDFDSVIDCN 103 (138)
T ss_dssp TTSCEEEECSCHHHHHHHHHHHHHHTCEEEEECTTCCSC-------CCTTSS--CEEEEESSSSCSSSC-CCBSEEEECS
T ss_pred CCCCEEEEeCcHHHHHHHHHHHhccccchhhhhccchhh-------hhhhhh--cceeehhHHHHhccc-cccceEEEEE
Confidence 567999999999999999999999999999999999853 466663 447889999999999 8899998855
Q ss_pred ----CCCCchhHHHHHHhhhccCCCCcEEEEEEEeCC
Q psy1089 320 ----SDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHS 352 (404)
Q Consensus 320 ----~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~ 352 (404)
+|+++..|.|++||++| |+.. +|.|++++
T Consensus 104 ~~~~~P~~~~~y~qr~GR~gR-g~~G---~~~~i~~~ 136 (138)
T d1jr6a_ 104 TSDGKPQDAVSRTQRRGRTGR-GKPG---IYRFVAPG 136 (138)
T ss_dssp EETTEECCHHHHHHHHTTBCS-SSCE---EEEECCSS
T ss_pred ecCCCCCCHHHHHhHhccccC-CCCc---EEEEEcCC
Confidence 68899999999999999 8665 47787765
No 15
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.28 E-value=1.1e-13 Score=127.34 Aligned_cols=105 Identities=10% Similarity=0.075 Sum_probs=85.0
Q ss_pred CCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeec--
Q psy1089 223 SSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLST-- 300 (404)
Q Consensus 223 ~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~-- 300 (404)
...|+..|.++|.. -|.++||||++...++.|..+|.. .+||+++..+|.+++++|.+|. +.||+++.
T Consensus 10 ~~~~~~~l~~~l~~---~~~~~iif~~~~~~~~~l~~~l~~------~~hg~~~~~~R~~~~~~f~~g~-~~vLVaT~a~ 79 (248)
T d1gkub2 10 NDESISTLSSILEK---LGTGGIIYARTGEEAEEIYESLKN------KFRIGIVTATKKGDYEKFVEGE-IDHLIGTAHY 79 (248)
T ss_dssp SCCCTTTTHHHHTT---SCSCEEEEESSHHHHHHHHHTTTT------SSCEEECTTSSSHHHHHHHHTS-CSEEEEECC-
T ss_pred CchHHHHHHHHHHH---hCCCEEEEECCHHHHHHHHHHHHH------hccCCCCHHHHHHHHHHHHhCC-CeEEEEeccc
Confidence 35577788888864 367899999999999999999975 3899999999999999999985 66666554
Q ss_pred -cccccCCCCCC-CCEEEEecCCCCchhHHHHHHhhhccCCCC
Q psy1089 301 -RAGGQGLNLTA-ADTCILYDSDWNPQVDIQAEARCHRIGQTK 341 (404)
Q Consensus 301 -~a~g~GlnL~~-a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~ 341 (404)
+.+++|||++. +++||+||+|| +.|++||++|.|+..
T Consensus 80 ~~v~~rGlDip~~v~~VI~~d~P~----~~~r~gR~~R~g~~~ 118 (248)
T d1gkub2 80 YGTLVRGLDLPERIRFAVFVGCPS----FRVTIEDIDSLSPQM 118 (248)
T ss_dssp -----CCSCCTTTCCEEEEESCCE----EEEECSCGGGSCHHH
T ss_pred cchhhhccCccccccEEEEeCCCc----chhhhhhhhccCcce
Confidence 67899999985 99999999998 457889999998653
No 16
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.27 E-value=5.7e-12 Score=112.19 Aligned_cols=121 Identities=17% Similarity=0.126 Sum_probs=92.7
Q ss_pred HHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhc------------------------------CCceEeccCCcCHHH
Q psy1089 230 LNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLE------------------------------NYNYYRLHGSIRNEE 279 (404)
Q Consensus 230 L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~------------------------------gi~~~~i~G~~~~~~ 279 (404)
+.+++.++...++++||||.+.+..+.++..|... ...+..+||++++++
T Consensus 29 ~~~l~~~~i~~~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GIa~hh~~l~~~~ 108 (201)
T d2p6ra4 29 FEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQ 108 (201)
T ss_dssp HHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHH
T ss_pred HHHHHHHHHHcCCcEEEEeCCHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhhhHHHHHHHhccHHHHHHHhhhhh
Confidence 33455556667899999999987776665554321 011466899999999
Q ss_pred HHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEE-------ecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCC
Q psy1089 280 RNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCIL-------YDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHS 352 (404)
Q Consensus 280 R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~-------~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~ 352 (404)
|..+...|+++. ++ +|++|.+.+.|+|++..+.||. ++.+.++..+.|+.||+||.|....-.+|-+..+.
T Consensus 109 r~~ie~~f~~g~-i~-vlvaT~~l~~Gin~p~~~vvi~~~~~~d~~~~~~~~~~~~q~~GRAGR~g~~~~G~~~l~~~~~ 186 (201)
T d2p6ra4 109 RRVVEDAFRRGN-IK-VVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKR 186 (201)
T ss_dssp HHHHHHHHHTTS-CC-EEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGG
T ss_pred HHHHHHHHhCCC-ce-EEEechHHHhhcCCCCceEEEecceeccCCcCCCCHHHHHHHhcccCCCCCCCeeEEEEEeCCC
Confidence 999999999985 44 5677899999999997777775 56678899999999999999987666776554443
No 17
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=99.16 E-value=1e-11 Score=115.16 Aligned_cols=108 Identities=16% Similarity=0.111 Sum_probs=87.0
Q ss_pred CCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHH----------HHHHHHHhCCCCceEEEeecccccc---C
Q psy1089 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEER----------NDAVQQFNGSTEWGVFLLSTRAGGQ---G 306 (404)
Q Consensus 240 ~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R----------~~~i~~F~~~~~~~vlLis~~a~g~---G 306 (404)
.++|+||||++....+.|...|+..|++...+||+++.+.| ..++..|.++. ..++ +.+.++.+ |
T Consensus 35 kggk~LVFcnSR~~aE~La~~L~~~Gi~a~~~Hgglsq~~R~~~gd~~i~~~~aLe~f~~G~-~dvV-VaT~~~a~g~~g 112 (299)
T d1a1va2 35 KGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGD-FDSV-IDCNTCVTQTVD 112 (299)
T ss_dssp HSSEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCGGGSCSSSSEEEEECTTC---CCCC-BSEE-EECCEEEEEEEE
T ss_pred cCCCEEEECCcHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHhccchHHHHHHHHHHHhcCC-CcEE-EEEeehhccCCC
Confidence 37899999999999999999999999999999999998876 45778888774 4544 44455444 7
Q ss_pred CCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCC
Q psy1089 307 LNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHST 353 (404)
Q Consensus 307 lnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~T 353 (404)
+|+....+||+++.|.+...|.||+||++| |... +|+++..+|
T Consensus 113 iDid~V~~VI~~d~P~SvesyIQRiGRTGR-Gr~G---~~~~l~~~t 155 (299)
T d1a1va2 113 FSLDPTFTIETTTLPQDAVSRTQRRGRTGR-GKPG---IYRFVAPGE 155 (299)
T ss_dssp CCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCE---EEEESCSCC
T ss_pred CCCCcceEEEeCCCCCCHHHHHhhccccCC-CCCc---eEEEEecCC
Confidence 889999999999999999999999999999 7443 556666554
No 18
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=99.06 E-value=4.2e-11 Score=106.52 Aligned_cols=118 Identities=14% Similarity=0.235 Sum_probs=89.6
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHH--------HHHH-Hh--cCCceEeccCCcCHHHHHHHHHHHhCCCC
Q psy1089 224 SGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFI--------EELC-VL--ENYNYYRLHGSIRNEERNDAVQQFNGSTE 292 (404)
Q Consensus 224 S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L--------~~~L-~~--~gi~~~~i~G~~~~~~R~~~i~~F~~~~~ 292 (404)
..|...+.+.+..-...|.++-+.|+..+..+.+ ...| +. .++.+..+||.+++++|++++.+|.+++
T Consensus 12 ~~~~~~v~~~I~~el~~g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~~~p~~~v~~lHG~m~~~eke~~m~~F~~g~- 90 (206)
T d1gm5a4 12 MDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGR- 90 (206)
T ss_dssp SSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTS-
T ss_pred cccHHHHHHHHHHHHHcCCCEEEEEeeecccccccchhhHHHHHHHHHhcCCCCeEEEEeecccHHHHHHHHHHHHCCC-
Confidence 4577777787777677888888778665433322 2222 22 2667888999999999999999999996
Q ss_pred ceEEEeeccccccCCCCCCCCEEEEecCC-CCchhHHHHHHhhhccCCCCcE
Q psy1089 293 WGVFLLSTRAGGQGLNLTAADTCILYDSD-WNPQVDIQAEARCHRIGQTKPV 343 (404)
Q Consensus 293 ~~vlLis~~a~g~GlnL~~a~~VI~~d~~-wnp~~~~Qa~gR~~R~Gq~~~V 343 (404)
+. +|++|.+.++|||++.|++||+++.+ +..+.+-|..||++|.|++..+
T Consensus 91 ~~-iLVaTtViE~GIDip~a~~iii~~a~~fglsqlhQlrGRvGR~~~~~~~ 141 (206)
T d1gm5a4 91 YD-ILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYC 141 (206)
T ss_dssp SS-BCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEE
T ss_pred EE-EEEEehhhhccccccCCcEEEEEccCCccHHHHHhhhhheeecccccee
Confidence 33 68889999999999999999999877 5788888999999999988654
No 19
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=98.78 E-value=2.3e-08 Score=88.15 Aligned_cols=121 Identities=16% Similarity=0.187 Sum_probs=97.2
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHh--cCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecc
Q psy1089 224 SGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVL--ENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTR 301 (404)
Q Consensus 224 S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~--~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~ 301 (404)
..+.. +.+.+..-...|.+|-+.|+.....+.+...+.. .++.+..+||.++.+++++++.+|.+++ +. +|++|.
T Consensus 15 ~~~~~-i~~~I~~El~rGgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~F~~g~-~~-ILv~Tt 91 (211)
T d2eyqa5 15 YDSMV-VREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQR-FN-VLVCTT 91 (211)
T ss_dssp CCHHH-HHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTS-CC-EEEESS
T ss_pred CCHHH-HHHHHHHHHHcCCeEEEEEcCccchhhHHHHHHHhCCceEEEEEEeccCHHHHHHHHHHHHcCC-cc-eEEEeh
Confidence 33444 4444544456789999999998888888777763 5778999999999999999999999996 33 678889
Q ss_pred ccccCCCCCCCCEEEEecCC-CCchhHHHHHHhhhccCCCCcEEEEEEE
Q psy1089 302 AGGQGLNLTAADTCILYDSD-WNPQVDIQAEARCHRIGQTKPVCIYRLV 349 (404)
Q Consensus 302 a~g~GlnL~~a~~VI~~d~~-wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li 349 (404)
+...|+|++.|+.+|+.+.+ |-.+..-|--||++|-+.. -+.|-+.
T Consensus 92 vIEvGiDvpnA~~iiI~~a~rfGLaQLhQLRGRVGR~~~~--s~c~l~~ 138 (211)
T d2eyqa5 92 IIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQ--AYAWLLT 138 (211)
T ss_dssp TTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBC--EEEEEEE
T ss_pred hhhhccCCCCCcEEEEecchhccccccccccceeeecCcc--ceEEEEe
Confidence 99999999999999998876 6888888999999998755 3444444
No 20
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}
Probab=98.74 E-value=2.3e-08 Score=85.56 Aligned_cols=120 Identities=17% Similarity=0.199 Sum_probs=97.3
Q ss_pred CCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccc
Q psy1089 223 SSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRA 302 (404)
Q Consensus 223 ~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a 302 (404)
...|+.++.+-+.++...|..|||++.+....+.|...|...|+++..++......+ ..++. . .+ ....+.++|..
T Consensus 16 ~~eK~~AIi~eV~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLnAk~~~~E-a~II~-~-Ag-~~g~VtIATNm 91 (175)
T d1tf5a4 16 MEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHERE-AQIIE-E-AG-QKGAVTIATNM 91 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHH-HHHHT-T-TT-STTCEEEEETT
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCceeehhhhHHHH-HHHHH-h-cc-CCCceeehhhH
Confidence 357999999999999899999999999999999999999999999999997654322 23332 2 22 13347888999
Q ss_pred cccCCCCC--------CCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEE
Q psy1089 303 GGQGLNLT--------AADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIY 346 (404)
Q Consensus 303 ~g~GlnL~--------~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy 346 (404)
+|+|.|+. +.=|||...++-+...+.|..||++|.|+......|
T Consensus 92 AGRGtDikl~~~v~~~GGLhVI~t~~~~s~Rid~Ql~GR~gRQGdpGs~~~~ 143 (175)
T d1tf5a4 92 AGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFY 143 (175)
T ss_dssp SSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEE
T ss_pred HHcCCCccchHHHHhCCCcEEEEeccCcchhHHHHHhcchhhhCCCcccEEE
Confidence 99998762 456899999999999999999999999987654433
No 21
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}
Probab=98.59 E-value=5.7e-08 Score=89.97 Aligned_cols=98 Identities=19% Similarity=0.144 Sum_probs=78.0
Q ss_pred hhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEE-
Q psy1089 238 KQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCI- 316 (404)
Q Consensus 238 ~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI- 316 (404)
...+.+++|||......+.+...|...|+.+..+||+++...+ ..|.++. ..++++|.+.+.|+|+ .+.+||
T Consensus 175 ~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~~----~~~~~~~--~~~lvaT~~~~~G~~~-~~~~Vi~ 247 (305)
T d2bmfa2 175 TDFKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEY----IKTRTND--WDFVVTTDISEMGANF-KAERVID 247 (305)
T ss_dssp HSSCSCEEEECSCHHHHHHHHHHHHHHTCCCEECCTTCHHHHG----GGGGTSC--CSEEEECGGGGTTCCC-CCSEEEE
T ss_pred HhhCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeCCcChHHHH----hhhhccc--hhhhhhhHHHHhcCCC-CccEEEE
Confidence 4567899999999999999999999999999999999865443 4566663 3367788999999998 555554
Q ss_pred ---------EecC----------CCCchhHHHHHHhhhccCCCCc
Q psy1089 317 ---------LYDS----------DWNPQVDIQAEARCHRIGQTKP 342 (404)
Q Consensus 317 ---------~~d~----------~wnp~~~~Qa~gR~~R~Gq~~~ 342 (404)
++|+ |-++..+.|+.||+||.|+...
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~GR~~~~~~ 292 (305)
T d2bmfa2 248 PRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNEN 292 (305)
T ss_dssp CCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCSSSCCC
T ss_pred cCCceeeeEecCCCCceEEeccccCCHHHHhhhhcCcCcCCCCce
Confidence 2333 3467789999999999997763
No 22
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]}
Probab=98.42 E-value=2.6e-07 Score=86.09 Aligned_cols=95 Identities=15% Similarity=0.123 Sum_probs=71.2
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEe
Q psy1089 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILY 318 (404)
Q Consensus 239 ~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~ 318 (404)
+.+.+++||+......+.++..|+..|..+..+||.++.+++++ |.++. .-+|++|++++.|+|+ .+.+||-.
T Consensus 34 ~~~g~~~~F~~s~~~~~~~a~~L~~~g~~V~~l~~~~~~~e~~~----~~~~~--~~~~~~t~~~~~~~~~-~~~~vid~ 106 (299)
T d1yksa2 34 ADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPT----IKQKK--PDFILATDIAEMGANL-CVERVLDC 106 (299)
T ss_dssp HCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC------------CC--CSEEEESSSTTCCTTC-CCSEEEEC
T ss_pred hcCCCEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCcCcHhHHhh----hhcCC--cCEEEEechhhhceec-CceEEEec
Confidence 35779999999999999999999999999999999999877664 44553 2378899999999999 68888844
Q ss_pred cC-------------------CCCchhHHHHHHhhhccCCC
Q psy1089 319 DS-------------------DWNPQVDIQAEARCHRIGQT 340 (404)
Q Consensus 319 d~-------------------~wnp~~~~Qa~gR~~R~Gq~ 340 (404)
.. +.+.+.-.|+.||+||.+..
T Consensus 107 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~~~ 147 (299)
T d1yksa2 107 RTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNR 147 (299)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTC
T ss_pred CceeceeeecCCCCeeEEeeeecCHHHHHHhcccccccCCC
Confidence 32 23444557999999998544
No 23
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=98.23 E-value=6.4e-06 Score=71.54 Aligned_cols=131 Identities=14% Similarity=0.140 Sum_probs=106.2
Q ss_pred cCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHH-HHHHHHhCCCCceEEEeec
Q psy1089 222 SSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERN-DAVQQFNGSTEWGVFLLST 300 (404)
Q Consensus 222 ~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~-~~i~~F~~~~~~~vlLis~ 300 (404)
....|+.++.+-+..+...|..|||.+.+...-+.|...|...|+++..++...- +|+ .+|.+- |. ...+-++|
T Consensus 15 T~~~K~~Avv~ei~~~h~~GqPVLVGT~SVe~SE~lS~lL~~~gi~h~vLNAK~h--erEAeIIAqA--G~-~GaVTIAT 89 (219)
T d1nkta4 15 TEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYH--EQEATIIAVA--GR-RGGVTVAT 89 (219)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCH--HHHHHHHHTT--TS-TTCEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEeeCcHHHHHHHHHHHHHhccchhccchhhH--HHHHHHHHhc--cc-CCcEEeec
Confidence 3468999999999999999999999999999999999999999999999998643 343 344332 22 33478889
Q ss_pred cccccCCCCC----------------------------------------------------CCCEEEEecCCCCchhHH
Q psy1089 301 RAGGQGLNLT----------------------------------------------------AADTCILYDSDWNPQVDI 328 (404)
Q Consensus 301 ~a~g~GlnL~----------------------------------------------------~a~~VI~~d~~wnp~~~~ 328 (404)
..+|+|.|+. +.=|||-.+.+-+...+.
T Consensus 90 NMAGRGTDI~LGgn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIGTErHeSrRIDn 169 (219)
T d1nkta4 90 NMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDN 169 (219)
T ss_dssp TTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHH
T ss_pred cccCCCCceeecCchhhhhHHHhhhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeccccccccccc
Confidence 9999999973 334899999999999999
Q ss_pred HHHHhhhccCCCCcEEEEEEEeCCCHHHHHHHHH
Q psy1089 329 QAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTID 362 (404)
Q Consensus 329 Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe~i~~~~ 362 (404)
|--||++|.|......+|- |+|+.++.+-
T Consensus 170 QLRGRsGRQGDPGsSrFfl-----SLeDdLmr~F 198 (219)
T d1nkta4 170 QLRGRSGRQGDPGESRFYL-----SLGDELMRRF 198 (219)
T ss_dssp HHHHTSSGGGCCEEEEEEE-----ETTSHHHHHT
T ss_pred cccccccccCCCccceeEE-----eccHHHHHHH
Confidence 9999999999776554443 6777777763
No 24
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=95.17 E-value=0.063 Score=47.76 Aligned_cols=94 Identities=13% Similarity=0.070 Sum_probs=74.9
Q ss_pred CCcHHHHHHHHHHHhhhCCCeEEEEecchHHHH----HHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEe
Q psy1089 223 SSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLN----FIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLL 298 (404)
Q Consensus 223 ~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~----~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLi 298 (404)
.|||..+....+......|.++++.+...-... .+...+...|+.+..++|+++..+|.++.....+|+ +.+++.
T Consensus 114 GSGKT~Va~~a~~~~~~~g~q~~~m~Pt~~La~Qh~~~~~~~f~~~~~~v~~l~~~~~~~~r~~~~~~~~~g~-~~iiIG 192 (264)
T d1gm5a3 114 GSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQ-IDVVIG 192 (264)
T ss_dssp SSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSC-CCEEEE
T ss_pred cccccHHHHHHHHHHHhcccceeEEeehHhhhHHHHHHHHHhhhhccccceeeccccchHHHHHHHHHHHCCC-CCEEEe
Confidence 499999999999888889999999998655433 455566667899999999999999999999999985 677777
Q ss_pred eccccccCCCCCCCCEEEE
Q psy1089 299 STRAGGQGLNLTAADTCIL 317 (404)
Q Consensus 299 s~~a~g~GlnL~~a~~VI~ 317 (404)
+..+....+.+.....||+
T Consensus 193 Thsl~~~~~~f~~Lglvii 211 (264)
T d1gm5a3 193 THALIQEDVHFKNLGLVII 211 (264)
T ss_dssp CTTHHHHCCCCSCCCEEEE
T ss_pred ehHHhcCCCCccccceeee
Confidence 6656666676666665555
No 25
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=94.26 E-value=0.17 Score=44.01 Aligned_cols=129 Identities=9% Similarity=0.020 Sum_probs=88.0
Q ss_pred cCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHH----hcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEE
Q psy1089 222 SSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCV----LENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFL 297 (404)
Q Consensus 222 ~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~----~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlL 297 (404)
..|||..+....+......|.++++.+.......-....++ ..|+.+..++|..+..+|..+.....+|. +.+++
T Consensus 85 vGsGKT~V~~~a~~~~~~~g~qv~~l~Pt~~La~Q~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~g~-~~ivi 163 (233)
T d2eyqa3 85 VGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGK-IDILI 163 (233)
T ss_dssp CCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTC-CSEEE
T ss_pred CCCCcHHHHHHHHHHHHHcCCceEEEccHHHhHHHHHHHHHHHHhhCCCEEEeccCcccchhHHHHHHHHhCCC-CCEEE
Confidence 35999999999999888999999999987766555555554 56888999999999999999999999995 56666
Q ss_pred eeccccccCCCCCCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeCCCHHH
Q psy1089 298 LSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQV 356 (404)
Q Consensus 298 is~~a~g~GlnL~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~~TiEe 356 (404)
.+-.+....+.+.....||+ |--...+.-....-|.++ .++++..+-+.-+.+-
T Consensus 164 Gths~l~~~~~f~~LgLiIi-DEeH~fg~kQ~~~l~~~~----~~~~~l~~SATPiprt 217 (233)
T d2eyqa3 164 GTHKLLQSDVKFKDLGLLIV-DEEHRFGVRHKERIKAMR----ANVDILTLTATPIPRT 217 (233)
T ss_dssp ECTHHHHSCCCCSSEEEEEE-ESGGGSCHHHHHHHHHHH----TTSEEEEEESSCCCHH
T ss_pred eehhhhccCCccccccceee-echhhhhhHHHHHHHhhC----CCCCEEEEecchhHHH
Confidence 55444544566655555554 433333333222223332 2366666655554444
No 26
>d2eyqa2 c.37.1.19 (A:349-465) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=74.53 E-value=2.2 Score=32.25 Aligned_cols=67 Identities=9% Similarity=0.006 Sum_probs=49.1
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeeccccccCCCCCCCCEEEEe
Q psy1089 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILY 318 (404)
Q Consensus 239 ~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a~g~GlnL~~a~~VI~~ 318 (404)
..+.+|||.|......+.|.+.|...|+++..+++- ..|.++ .+.++ ......|.-++..+.+|+-
T Consensus 32 ~~~~~Vli~a~s~g~~erl~e~L~~~~i~~~~~~~~----------~~~~~~-~~~i~---~~~l~~GF~~~~~~l~vIt 97 (117)
T d2eyqa2 32 TFDGPVVFSVESEGRREALGELLARIKIAPQRIMRL----------DEASDR-GRYLM---IGAAEHGFVDTVRNLALIC 97 (117)
T ss_dssp TCCSCCCEEESSHHHHHHHHHHHGGGTCCCEECSSG----------GGCCTT-CCEEE---ECCCCSCEEETTTTEEEEE
T ss_pred hCCCeEEEEECCccHHHHHHHHHHHcCCCceEecCh----------hhhcCc-eEEEE---EecCccccccCCCCEEEEE
Confidence 346789999999999999999999999998776541 223333 23322 3556688888888888886
Q ss_pred c
Q psy1089 319 D 319 (404)
Q Consensus 319 d 319 (404)
+
T Consensus 98 E 98 (117)
T d2eyqa2 98 E 98 (117)
T ss_dssp H
T ss_pred c
Confidence 5
No 27
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=64.42 E-value=13 Score=30.72 Aligned_cols=93 Identities=14% Similarity=0.110 Sum_probs=58.2
Q ss_pred cCCcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHH----hcCCc----eEeccCCcCHHHHHHHHHHHhCCCCc
Q psy1089 222 SSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCV----LENYN----YYRLHGSIRNEERNDAVQQFNGSTEW 293 (404)
Q Consensus 222 ~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~----~~gi~----~~~i~G~~~~~~R~~~i~~F~~~~~~ 293 (404)
..+||-....-.+......|.++||.+.......-+.+.++ ..|+. +..+++..+..++...+....+ .
T Consensus 67 TGsGKT~~~~~~~~~~~~~~~rvliv~Pt~~La~Q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~ 143 (237)
T d1gkub1 67 TGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN---F 143 (237)
T ss_dssp BTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG---C
T ss_pred CCChHHHHHHHHHHHHHHhcCeEEEEeccHHHHHHHHHHHHHHHHHcCCceEEEEeeeecccchhhhhhhhccccc---c
Confidence 45899976655555555678899999998877666655554 34444 3455677777777766655543 3
Q ss_pred eEEEeeccccccCC-CCCCCCEEEE
Q psy1089 294 GVFLLSTRAGGQGL-NLTAADTCIL 317 (404)
Q Consensus 294 ~vlLis~~a~g~Gl-nL~~a~~VI~ 317 (404)
.+++.++......+ ++...+.||+
T Consensus 144 ~Ilv~Tp~~l~~~~~~~~~~~~vVv 168 (237)
T d1gkub1 144 KIVITTTQFLSKHYRELGHFDFIFV 168 (237)
T ss_dssp SEEEEEHHHHHHCSTTSCCCSEEEE
T ss_pred ceeccChHHHHHhhhhcCCCCEEEE
Confidence 46776665443332 3455665554
No 28
>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]}
Probab=58.54 E-value=51 Score=27.87 Aligned_cols=104 Identities=15% Similarity=0.091 Sum_probs=67.5
Q ss_pred ccCCcCHHHHHHHHHHHhCCCCceEEEeeccc--cccCCCC---CCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEE
Q psy1089 271 LHGSIRNEERNDAVQQFNGSTEWGVFLLSTRA--GGQGLNL---TAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCI 345 (404)
Q Consensus 271 i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~a--~g~GlnL---~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~V 345 (404)
+..+++.++-...+..++......+++++.-. -..|+.- .+++-+|+.|+||.........-+ ++.+..
T Consensus 72 L~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~n~~~~~~~~~~~~~GvdG~IipDlp~eE~~~~~~~~~------~~gl~~ 145 (261)
T d1rd5a_ 72 LASGTTMDAVLEMLREVTPELSCPVVLLSYYKPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEAK------NNNLEL 145 (261)
T ss_dssp HTTTCCHHHHHHHHHHHGGGCSSCEEEECCSHHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHHHH------HTTCEE
T ss_pred cccCcchhhhhhhhhcccccccCceeeeeeecchhhHHHHHHHhcCceeeeecCccHHHHHHHHHHHh------ccccce
Confidence 34456666667788888876666666666432 2244431 478899999999986554333333 234788
Q ss_pred EEEEeCCCHHHHHHHHHhcCCccccchhhhcccccccccccCc
Q psy1089 346 YRLVSHSTYQVHLFTIDSSGSVSWSSQSVKEKLPIGFMCVTGS 388 (404)
Q Consensus 346 y~Li~~~TiEe~i~~~~~~K~~~~~~~~~~~~l~~~~~~~~~~ 388 (404)
..|+++.|-+++|.+.++. ....-+....+.+++.
T Consensus 146 I~lvaPtt~~~Ri~~i~~~--------a~gFvY~vs~~GvTG~ 180 (261)
T d1rd5a_ 146 VLLTTPAIPEDRMKEITKA--------SEGFVYLVSVNGVTGP 180 (261)
T ss_dssp CEEECTTSCHHHHHHHHHH--------CCSCEEEECSSCCBCT
T ss_pred EEEeccCCchhHHHHHHhc--------CcchhhhhhccCcccc
Confidence 8999999999999999774 2334444445555444
No 29
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Probab=56.91 E-value=42 Score=27.42 Aligned_cols=92 Identities=15% Similarity=0.075 Sum_probs=62.1
Q ss_pred cCCcHHH-HHHHHHHHhhh--CCCeEEEEecchHHHHHHHHHHH----hcCCceEeccCCcCHHHHHHHHHHHhCCCCce
Q psy1089 222 SSSGKMI-VLNQLLHKLKQ--TNHKTLVFSTMVKVLNFIEELCV----LENYNYYRLHGSIRNEERNDAVQQFNGSTEWG 294 (404)
Q Consensus 222 ~~S~Kl~-~L~~ll~~l~~--~~~KvlIFs~~~~~l~~L~~~L~----~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~ 294 (404)
..|||.- ++..++..+.. .+.+++|++.......-+...+. ..++.+..+.|+.+..+....++ .+ +.
T Consensus 63 TGSGKTlayllPil~~l~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~g~~~~~~~~~~l~---~~--~~ 137 (222)
T d2j0sa1 63 SGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD---YG--QH 137 (222)
T ss_dssp TTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHH---HC--CS
T ss_pred cchhhhhhhcccccccccccccCceeEEecchHHHHHHHHHHHHHHhCccceeEEEEeecccchhhHHHhc---cC--Ce
Confidence 4688964 45677766533 34578999999988887777664 45677888889888766554443 33 45
Q ss_pred EEEeecccc-----ccCCCCCCCCEEEEe
Q psy1089 295 VFLLSTRAG-----GQGLNLTAADTCILY 318 (404)
Q Consensus 295 vlLis~~a~-----g~GlnL~~a~~VI~~ 318 (404)
+++.++... ...+++....++|+=
T Consensus 138 Ilv~TPgrl~~~~~~~~~~~~~l~~lVlD 166 (222)
T d2j0sa1 138 VVAGTPGRVFDMIRRRSLRTRAIKMLVLD 166 (222)
T ss_dssp EEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred EEeCCCCcHHhcccccccccccceeeeec
Confidence 666665532 456677888888763
No 30
>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}
Probab=53.47 E-value=26 Score=25.09 Aligned_cols=61 Identities=16% Similarity=0.217 Sum_probs=42.6
Q ss_pred CCeEEEEecch-HHHHHHHHHHHhcCCc-----eEeccCCcCHHHHHHHHHHHhCCCCceEEEeecc
Q psy1089 241 NHKTLVFSTMV-KVLNFIEELCVLENYN-----YYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTR 301 (404)
Q Consensus 241 ~~KvlIFs~~~-~~l~~L~~~L~~~gi~-----~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~ 301 (404)
..+|+||+... .........|...|+. +..++-..........+..+...+..+.+++...
T Consensus 11 ~~~Vviysk~~Cp~C~~ak~ll~~~~~~~~~~~~~e~d~~~d~~~~~~~l~~~~g~~tvPqIfi~g~ 77 (105)
T d1ktea_ 11 PGKVVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVFIGKE 77 (105)
T ss_dssp TTCEEEEECSSCHHHHHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEEETTE
T ss_pred cCCEEEEECCCCchHHHHHHHHHHhCCccceeeeeecccccccHHHHHHHhhccCCCcCcEEEECCE
Confidence 46899998765 4567788888887765 5556656666777778888876665555665533
No 31
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=47.49 E-value=63 Score=25.67 Aligned_cols=93 Identities=13% Similarity=0.145 Sum_probs=61.2
Q ss_pred cCCcHHHHHHHHHHH-h-hhCCCeEEEEecchHHHHHHHHHHH----hcCCceEeccCCcCHHHHHHHHHHHhCCCCceE
Q psy1089 222 SSSGKMIVLNQLLHK-L-KQTNHKTLVFSTMVKVLNFIEELCV----LENYNYYRLHGSIRNEERNDAVQQFNGSTEWGV 295 (404)
Q Consensus 222 ~~S~Kl~~L~~ll~~-l-~~~~~KvlIFs~~~~~l~~L~~~L~----~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~v 295 (404)
..|||.-...-.+.. . ...+.++||.+.....+..+...+. ..+..+....|..+..+..+.+. + +.+
T Consensus 51 TGsGKT~~~~l~~~~~~~~~~~~~~lil~pt~~l~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~----~--~~I 124 (208)
T d1hv8a1 51 TGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK----N--ANI 124 (208)
T ss_dssp SSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH----T--CSE
T ss_pred hcccccceeecccccccccccCcceEEEeeccccchhhhhhhhhhcccCCeEEEEeeCCCChHHHHHhcC----C--CCE
Confidence 458888765433333 2 2356799999999888777666554 45677888899888776655442 2 456
Q ss_pred EEeeccc-----cccCCCCCCCCEEEEecC
Q psy1089 296 FLLSTRA-----GGQGLNLTAADTCILYDS 320 (404)
Q Consensus 296 lLis~~a-----~g~GlnL~~a~~VI~~d~ 320 (404)
++.++.. -...+++....++|+=+-
T Consensus 125 lV~TP~~l~~~l~~~~~~~~~l~~lViDEa 154 (208)
T d1hv8a1 125 VVGTPGRILDHINRGTLNLKNVKYFILDEA 154 (208)
T ss_dssp EEECHHHHHHHHHTTCSCTTSCCEEEEETH
T ss_pred EEEChHHHHHHHHcCCCCcccCcEEEEECh
Confidence 6666442 134567888888887543
No 32
>d1xpja_ c.108.1.18 (A:) Hypothetical protein VC0232 {Vibrio cholerae [TaxId: 666]}
Probab=45.48 E-value=16 Score=27.55 Aligned_cols=43 Identities=14% Similarity=0.138 Sum_probs=33.0
Q ss_pred HHHHHHHHhhhCCCeEEEEecch-------------HHHHHHHHHHHhcCCceEec
Q psy1089 229 VLNQLLHKLKQTNHKTLVFSTMV-------------KVLNFIEELCVLENYNYYRL 271 (404)
Q Consensus 229 ~L~~ll~~l~~~~~KvlIFs~~~-------------~~l~~L~~~L~~~gi~~~~i 271 (404)
-..+.+..+...|.+++||+... ...+...+.|+..|++|-.+
T Consensus 28 ~~Ie~l~~l~~~G~~Iii~TaR~~~~~~~~~~~~~~~~~~~T~~wL~~~gI~Yd~L 83 (124)
T d1xpja_ 28 DVIEQLREYHQLGFEIVISTARNMRTYEGNVGKINIHTLPIITEWLDKHQVPYDEI 83 (124)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTTTTTTTCHHHHHHHTHHHHHHHHHHTTCCCSEE
T ss_pred HHHHHHHHHHHCCCEEEEEecCCccccCCcHHHHHHHHHHHHHHHHHHcCCCceEE
Confidence 34577778888999999999762 34567888899889887544
No 33
>d1byka_ c.93.1.1 (A:) Trehalose repressor, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=42.53 E-value=57 Score=26.44 Aligned_cols=40 Identities=3% Similarity=0.017 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCC
Q psy1089 252 KVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGST 291 (404)
Q Consensus 252 ~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~ 291 (404)
..+.-|...++..|+....+++..+.+...+.++.+....
T Consensus 19 ~~~~~i~~~~~~~Gy~~~~~~s~~d~~~~~~~i~~l~~~~ 58 (255)
T d1byka_ 19 LAVQTMLPAFYEQGYDPIMMESQFSPQLVAEHLGVLKRRN 58 (255)
T ss_dssp HHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhcc
Confidence 3455666666667777666666666666666666666543
No 34
>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=41.98 E-value=31 Score=24.98 Aligned_cols=61 Identities=11% Similarity=0.124 Sum_probs=39.5
Q ss_pred CCCeEEEEecc------hHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecc
Q psy1089 240 TNHKTLVFSTM------VKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTR 301 (404)
Q Consensus 240 ~~~KvlIFs~~------~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~ 301 (404)
...+|+||+.. -.......+.|...|++|..++=.....-+ ..+..+...+.++.+++...
T Consensus 13 ~~~~VvvF~Kgt~~~p~Cp~c~~ak~lL~~~~i~~~~~~v~~~~~~~-~~l~~~t~~~TvPqIFi~g~ 79 (109)
T d1wika_ 13 NKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVR-QGLKTFSNWPTYPQLYVRGD 79 (109)
T ss_dssp TTSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHH-HHHHHHHSCCSSCEEECSSS
T ss_pred hcCCEEEEeCCCCCCCCChHHHHHHHHHHhcCCCceEEEecccHHHH-HHHHHhcCCCCCCeEEECCE
Confidence 35799999531 223566777888999999888766555444 44555555555566666544
No 35
>d1em8a_ c.128.1.1 (A:) DNA polymerase III chi subunit {Escherichia coli [TaxId: 562]}
Probab=41.48 E-value=19 Score=27.79 Aligned_cols=38 Identities=11% Similarity=0.053 Sum_probs=33.9
Q ss_pred CcHHHHHHHHHHHhhhCCCeEEEEecchHHHHHHHHHH
Q psy1089 224 SGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELC 261 (404)
Q Consensus 224 S~Kl~~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L 261 (404)
++-...+++++.+....|.|++|+|.....++.|-+.|
T Consensus 19 ~~~~~~~crL~~K~~~~g~ri~I~~~d~~~~~~lD~~L 56 (147)
T d1em8a_ 19 SAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEAL 56 (147)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 44566788999999999999999999999999999998
No 36
>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]}
Probab=40.57 E-value=66 Score=27.18 Aligned_cols=130 Identities=12% Similarity=0.098 Sum_probs=80.1
Q ss_pred HHHHHHHHhhhCCCeEEE-Ee--cc--hHHHHHHHHHHHhcCCceEec---------cC-------------CcCHHHHH
Q psy1089 229 VLNQLLHKLKQTNHKTLV-FS--TM--VKVLNFIEELCVLENYNYYRL---------HG-------------SIRNEERN 281 (404)
Q Consensus 229 ~L~~ll~~l~~~~~KvlI-Fs--~~--~~~l~~L~~~L~~~gi~~~~i---------~G-------------~~~~~~R~ 281 (404)
.+.++.+++..++++.+| |. -+ ......+...|...|.++..+ || +++..+-.
T Consensus 3 ri~~~f~~lk~~~~~ali~y~t~G~P~~~~~~~~~~~l~~~GaDiiElGiPfSDP~aDGpvIq~a~~~al~~G~~~~~~~ 82 (267)
T d1qopa_ 3 RYENLFAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCF 82 (267)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHH
T ss_pred hHHHHHHHHHHcCCceEEEEEeCcCCCHHHHHHHHHHHHHcCCCEEEECCCCCcccccchHHHhhhhhcccccchhhhhh
Confidence 355666777777777654 32 12 222223333444555554433 23 34444455
Q ss_pred HHHHHHhCC-CCceEEEeecc--ccccCCCC-------CCCCEEEEecCCCCchhHHHHHHhhhccCCCCcEEEEEEEeC
Q psy1089 282 DAVQQFNGS-TEWGVFLLSTR--AGGQGLNL-------TAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSH 351 (404)
Q Consensus 282 ~~i~~F~~~-~~~~vlLis~~--a~g~GlnL-------~~a~~VI~~d~~wnp~~~~Qa~gR~~R~Gq~~~V~Vy~Li~~ 351 (404)
..+..++.. ....+++++.- ....|++- .+++-+|+-|.|+.-........+- +......|+++
T Consensus 83 ~~~~~~r~~~~~~pivlm~Y~N~i~~~G~~~f~~~~~~~Gv~GliipDlP~ee~~~~~~~~~~------~~l~~I~lvaP 156 (267)
T d1qopa_ 83 EMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALR------HNIAPIFICPP 156 (267)
T ss_dssp HHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHH------TTCEEECEECT
T ss_pred hhhhhhcccccccceEEEeeccchhhcCchHHHHHHHhcCCCceeccchhhhhhHHHHHhhhc------cCceEEEEecc
Confidence 667777654 35677777633 34555432 3688999999998776555444333 35788999999
Q ss_pred CCHHHHHHHHHhc
Q psy1089 352 STYQVHLFTIDSS 364 (404)
Q Consensus 352 ~TiEe~i~~~~~~ 364 (404)
.|-+|+|-..++.
T Consensus 157 tt~~~Ri~~i~~~ 169 (267)
T d1qopa_ 157 NADDDLLRQVASY 169 (267)
T ss_dssp TCCHHHHHHHHHH
T ss_pred cccHHHHHHHHhh
Confidence 9999999999774
No 37
>d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=38.98 E-value=14 Score=27.63 Aligned_cols=38 Identities=8% Similarity=-0.017 Sum_probs=31.4
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcC
Q psy1089 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIR 276 (404)
Q Consensus 239 ~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~ 276 (404)
..++++++||..-.........|+..|+.+..++|++.
T Consensus 78 ~~~~~ivl~C~~G~rS~~aa~~L~~~G~~v~~l~GG~~ 115 (130)
T d1yt8a4 78 VRGARLVLVDDDGVRANMSASWLAQMGWQVAVLDGLSE 115 (130)
T ss_dssp SBTCEEEEECSSSSHHHHHHHHHHHTTCEEEEECSCCG
T ss_pred CccceEEeecCCCccHHHHHHHHHHcCCCeEEEcCchH
Confidence 35678999998876677788899999999889999874
No 38
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}
Probab=38.51 E-value=93 Score=25.02 Aligned_cols=56 Identities=9% Similarity=-0.035 Sum_probs=41.4
Q ss_pred cCCcHHHHHHHHHHHhhhCCCeEEEEecc---hHHHHHHHHHHHhcCCceEeccCCcCH
Q psy1089 222 SSSGKMIVLNQLLHKLKQTNHKTLVFSTM---VKVLNFIEELCVLENYNYYRLHGSIRN 277 (404)
Q Consensus 222 ~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~---~~~l~~L~~~L~~~gi~~~~i~G~~~~ 277 (404)
..+||-..+.++-..+...|.||.+.+-- ..-.+-|+.+-+..|+++.........
T Consensus 15 tGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~ 73 (207)
T d1okkd2 15 NGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDP 73 (207)
T ss_dssp TTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCTTCCH
T ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEEeccccccchhhHhhcccccCceEEeccCCccH
Confidence 46899999999988887788898877543 345677777777788887665544433
No 39
>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=34.74 E-value=56 Score=22.48 Aligned_cols=57 Identities=14% Similarity=0.019 Sum_probs=39.1
Q ss_pred eEEEEecchH-------HHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCC-CCceEEEee
Q psy1089 243 KTLVFSTMVK-------VLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGS-TEWGVFLLS 299 (404)
Q Consensus 243 KvlIFs~~~~-------~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~-~~~~vlLis 299 (404)
.+.||+.+.. ....+...|...|++|..++-......|......-..+ ..++.+++.
T Consensus 3 ~i~vy~ts~~~~~~~~~~~~r~~~lL~~~~I~y~~iDi~~d~~~~~~~~~~~g~~~~t~Pqifv~ 67 (93)
T d1t1va_ 3 GLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVNG 67 (93)
T ss_dssp CEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEEET
T ss_pred CEEEEEccCcCChhhHHHHHHHHHHHHHCCCceEEEEecCchhHHHHHHHhccCCCceeEEEEEC
Confidence 4677766544 47788889999999999999988887776665543332 233444444
No 40
>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=34.21 E-value=22 Score=25.89 Aligned_cols=59 Identities=10% Similarity=0.108 Sum_probs=31.5
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecc
Q psy1089 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTR 301 (404)
Q Consensus 239 ~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~ 301 (404)
..|-.|..+++....++.+.. ..+..+.++=.+|...-.+.+...+..+.+++++++..
T Consensus 22 ~~g~~v~~a~~~~eal~~~~~----~~~dlillD~~mp~~~G~~~~~~i~~~~~~pvI~lt~~ 80 (117)
T d2a9pa1 22 KEGYEVVTAFNGREALEQFEA----EQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLSAK 80 (117)
T ss_dssp HTTCEEEEESSHHHHHHHHHH----HCCSEEEECSSCSSSCHHHHHHHHHTTCCCCEEEEESC
T ss_pred HCCCEEEEECCHHHHHHHHHh----cCCCEEEeccccCCCCccHHHHHHHhCCCCCEEEEecC
Confidence 346666666665555554433 34566666554444333444555544445666666643
No 41
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=33.95 E-value=66 Score=24.85 Aligned_cols=92 Identities=16% Similarity=0.178 Sum_probs=56.6
Q ss_pred cCCcHHHHHHHHHH-HhhhCCCeEEEEecchHHHHHHHHHHH----hcCCceEeccCCcCHHHHHHHHHHHhCCCCceEE
Q psy1089 222 SSSGKMIVLNQLLH-KLKQTNHKTLVFSTMVKVLNFIEELCV----LENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVF 296 (404)
Q Consensus 222 ~~S~Kl~~L~~ll~-~l~~~~~KvlIFs~~~~~l~~L~~~L~----~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vl 296 (404)
.+|||-....-++. .+...+.++|+.+.....++-..+.+. ..+..+..++++....+|...... ..++
T Consensus 32 TGsGKT~i~~~~~~~~~~~~~~~il~i~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------~~i~ 105 (200)
T d1wp9a1 32 TGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWAR------AKVI 105 (200)
T ss_dssp TTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHHH------CSEE
T ss_pred CCCcHHHHHHHHHHHHHHhcCCcEEEEcCchHHHHHHHHHHHHhhcccccceeeeecccchhHHHHhhhc------cccc
Confidence 45899865443433 334567889999988776665555444 335667788898888888766544 2345
Q ss_pred Eeeccccc-----cCCCCCCCCEEEEec
Q psy1089 297 LLSTRAGG-----QGLNLTAADTCILYD 319 (404)
Q Consensus 297 Lis~~a~g-----~GlnL~~a~~VI~~d 319 (404)
++++..+. ..+.+...+.||+=|
T Consensus 106 i~t~~~~~~~~~~~~~~~~~~~~vIiDE 133 (200)
T d1wp9a1 106 VATPQTIENDLLAGRISLEDVSLIVFDE 133 (200)
T ss_dssp EECHHHHHHHHHTTSCCTTSCSEEEEET
T ss_pred ccccchhHHHHhhhhhhccccceEEEEe
Confidence 55544432 233445666666533
No 42
>d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=33.41 E-value=13 Score=27.34 Aligned_cols=38 Identities=5% Similarity=-0.099 Sum_probs=30.6
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhcCCc-eEeccCCcC
Q psy1089 239 QTNHKTLVFSTMVKVLNFIEELCVLENYN-YYRLHGSIR 276 (404)
Q Consensus 239 ~~~~KvlIFs~~~~~l~~L~~~L~~~gi~-~~~i~G~~~ 276 (404)
..+.++||+|..-.........|...|+. +..+.|+..
T Consensus 70 ~~~~~iv~~C~~G~rs~~a~~~L~~~G~~nv~~l~GG~~ 108 (119)
T d1tq1a_ 70 GQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 108 (119)
T ss_dssp CTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCcEEEEEcCCcCcHHHHHHHHHhcccCCeEEecChHH
Confidence 35689999998877777788889989984 777889874
No 43
>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli [TaxId: 562]}
Probab=32.81 E-value=25 Score=25.09 Aligned_cols=46 Identities=11% Similarity=0.231 Sum_probs=34.4
Q ss_pred HHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCc-eEeccCCcC
Q psy1089 230 LNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYN-YYRLHGSIR 276 (404)
Q Consensus 230 L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~-~~~i~G~~~ 276 (404)
+...+..+ ..+..+|++|............|...|++ +..+.|++.
T Consensus 48 l~~~~~~~-~~~~~ivv~c~~g~rs~~~a~~L~~~G~~~v~~l~GG~~ 94 (108)
T d1gmxa_ 48 LGAFMRDN-DFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp HHHHHHHS-CTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred HHHHhhhc-cccCcccccCCCChHHHHHHHHHHHcCCCCEEEEcChHH
Confidence 44444443 45678999998877777888899999995 677888764
No 44
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Probab=32.70 E-value=97 Score=24.84 Aligned_cols=58 Identities=14% Similarity=0.060 Sum_probs=43.4
Q ss_pred cCCcHHHHHHHHHHHhhhCCCeEEEEecc---hHHHHHHHHHHHhcCCceEeccCCcCHHH
Q psy1089 222 SSSGKMIVLNQLLHKLKQTNHKTLVFSTM---VKVLNFIEELCVLENYNYYRLHGSIRNEE 279 (404)
Q Consensus 222 ~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~---~~~l~~L~~~L~~~gi~~~~i~G~~~~~~ 279 (404)
..+||-..+.+|-..+...+.||.+.+-- ....+.|..+-+..|+++..........+
T Consensus 19 ~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~ 79 (207)
T d1ls1a2 19 QGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPES 79 (207)
T ss_dssp TTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEecccccchHHHHHHHHHHhcCCccccccccchhhH
Confidence 46899999999998888888898877542 34466777777778899887766555433
No 45
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}
Probab=31.34 E-value=1.2e+02 Score=24.33 Aligned_cols=79 Identities=15% Similarity=0.187 Sum_probs=52.1
Q ss_pred ccCCcHHHHHHHHHHHhhhCCCeEEEEecch---HHHHHHHHHHHhcCCceEeccCCcCHHH-HHHHHHHHhCCCCceEE
Q psy1089 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMV---KVLNFIEELCVLENYNYYRLHGSIRNEE-RNDAVQQFNGSTEWGVF 296 (404)
Q Consensus 221 ~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~~---~~l~~L~~~L~~~gi~~~~i~G~~~~~~-R~~~i~~F~~~~~~~vl 296 (404)
...+||-..+.++-..+...|.||.+.+--+ .-.+-|+.+-+..|+++...+....... -.+.++.+... +..++
T Consensus 17 ptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~~~a~~~-~~d~i 95 (211)
T d2qy9a2 17 VNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKAR-NIDVL 95 (211)
T ss_dssp CTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHHHHHHT-TCSEE
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcEEEEecccccccchhhhhhhhhhcCCcccccccCCCHHHHHHHHHHHHHHc-CCCEE
Confidence 3468999999999988877888998886533 3467777777888999887765554432 22333333332 24556
Q ss_pred Eeec
Q psy1089 297 LLST 300 (404)
Q Consensus 297 Lis~ 300 (404)
|+.|
T Consensus 96 lIDT 99 (211)
T d2qy9a2 96 IADT 99 (211)
T ss_dssp EECC
T ss_pred Eecc
Confidence 6543
No 46
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}
Probab=30.28 E-value=1.2e+02 Score=24.50 Aligned_cols=57 Identities=7% Similarity=0.026 Sum_probs=42.1
Q ss_pred ccCCcHHHHHHHHHHHhhhCCCeEEEEecc---hHHHHHHHHHHHhcCCceEeccCCcCH
Q psy1089 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTM---VKVLNFIEELCVLENYNYYRLHGSIRN 277 (404)
Q Consensus 221 ~~~S~Kl~~L~~ll~~l~~~~~KvlIFs~~---~~~l~~L~~~L~~~gi~~~~i~G~~~~ 277 (404)
...+||-..+.++-..+...+.||.+.+-- ..-.+.|..+-+..|+++.........
T Consensus 19 ptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~ 78 (213)
T d1vmaa2 19 VNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADP 78 (213)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCceEEEeecccccchhHHHHHHhhhcCccccccCCCCcH
Confidence 346899999999998888888898877543 344677777777888888766544443
No 47
>d1v5xa_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermus thermophilus [TaxId: 274]}
Probab=29.09 E-value=57 Score=26.00 Aligned_cols=51 Identities=16% Similarity=0.031 Sum_probs=36.8
Q ss_pred HHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHH
Q psy1089 229 VLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERN 281 (404)
Q Consensus 229 ~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~ 281 (404)
...+++..+...-.+|.||.+.. .+.+.+.+...++.++.+||..+++.-.
T Consensus 41 ~a~~i~~~~~~~~~~V~Vf~~~~--~~~i~~~~~~~~~d~vQlHg~e~~~~~~ 91 (200)
T d1v5xa_ 41 AARAIGEALGPFVVRVGVFRDQP--PEEVLRLMEEARLQVAQLHGEEPPEWAE 91 (200)
T ss_dssp HHHHHHHHSCSSSEEEEEESSCC--HHHHHHHHHHTTCSEEEECSCCCHHHHH
T ss_pred HHHHHHHhhcCceeeeeeeeech--hhhhhhhhcccccccccccccCCHHHHH
Confidence 34455554444457899998644 3667778888999999999999987543
No 48
>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}
Probab=28.75 E-value=72 Score=20.80 Aligned_cols=56 Identities=4% Similarity=0.032 Sum_probs=37.5
Q ss_pred eEEEEecc-hHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeec
Q psy1089 243 KTLVFSTM-VKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLST 300 (404)
Q Consensus 243 KvlIFs~~-~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~ 300 (404)
|+.||+.. -.........|...|++|..++=....+.++. +..... ..+.++++..
T Consensus 2 ki~iYs~~~C~~C~~ak~~L~~~~i~y~~~~i~~~~~~~~~-~~~~g~-~tvP~i~i~~ 58 (76)
T d1h75a_ 2 RITIYTRNDCVQCHATKRAMENRGFDFEMINVDRVPEAAEA-LRAQGF-RQLPVVIAGD 58 (76)
T ss_dssp CEEEEECTTCHHHHHHHHHHHHTTCCCEEEETTTCHHHHHH-HHHTTC-CSSCEEEETT
T ss_pred EEEEEeCCCCccHHHHHHHHHhcCceeEEEeecCCHHHHHH-HHhcCC-CCCCEEEECC
Confidence 57888753 34578888899999999999887766654443 333322 2466666643
No 49
>d1v65a_ a.212.1.1 (A:) hypotheical protein 2610044O15Rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.65 E-value=15 Score=24.34 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=15.2
Q ss_pred ecCCCHHHHHHHHHHHhhh
Q psy1089 30 DCPMVPAQELMYTKVLTKT 48 (404)
Q Consensus 30 ~~~lt~~Q~~~Y~~~~~~~ 48 (404)
.--|+|.||++|+++....
T Consensus 22 W~~Ld~~Qk~LyrdVm~En 40 (64)
T d1v65a_ 22 WDLLDSSQKRLYEEVMLET 40 (64)
T ss_dssp HHTSCHHHHHHHHHHHHHT
T ss_pred HhCcCHHHHHHHHHhHHHH
Confidence 3468899999999987654
No 50
>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]}
Probab=28.39 E-value=31 Score=25.05 Aligned_cols=57 Identities=11% Similarity=0.162 Sum_probs=27.3
Q ss_pred CCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhC-CCCceEEEeec
Q psy1089 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-STEWGVFLLST 300 (404)
Q Consensus 240 ~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~-~~~~~vlLis~ 300 (404)
.|-.+..++.....++.+. ...+..+.++-.+|.-.=.+.+.+.+. .+...++++|.
T Consensus 24 ~g~~v~~a~~g~eal~~~~----~~~~dlillD~~mP~~~G~el~~~lr~~~~~~pvi~lt~ 81 (119)
T d1peya_ 24 EGYQTFQAANGLQALDIVT----KERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTA 81 (119)
T ss_dssp TTCEEEEESSHHHHHHHHH----HHCCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEEES
T ss_pred cCCEEEEeCCHHHHHHHHH----hCCCCEEEEeccCCCCCHHHHHHHHHHhCCCCcEEEEec
Confidence 4566665555444444333 234556666655544333333333322 23456666653
No 51
>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide dehydrogenase, Sud) {Wolinella succinogenes [TaxId: 844]}
Probab=28.16 E-value=19 Score=27.23 Aligned_cols=37 Identities=11% Similarity=0.206 Sum_probs=30.4
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhcCCc-eEeccCCc
Q psy1089 239 QTNHKTLVFSTMVKVLNFIEELCVLENYN-YYRLHGSI 275 (404)
Q Consensus 239 ~~~~KvlIFs~~~~~l~~L~~~L~~~gi~-~~~i~G~~ 275 (404)
..+.++|+||..-.........|...|++ +..+.|++
T Consensus 80 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~nV~~l~GG~ 117 (137)
T d1qxna_ 80 DPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGM 117 (137)
T ss_dssp CTTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCH
T ss_pred CcccceeeeecccchHHHHHHHHHHcCCCcEEEecCHH
Confidence 45678999999877778888899999995 66789986
No 52
>d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase {Escherichia coli [TaxId: 562]}
Probab=26.67 E-value=37 Score=24.31 Aligned_cols=38 Identities=5% Similarity=-0.118 Sum_probs=29.3
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhcCCc-eEeccCCcC
Q psy1089 239 QTNHKTLVFSTMVKVLNFIEELCVLENYN-YYRLHGSIR 276 (404)
Q Consensus 239 ~~~~KvlIFs~~~~~l~~L~~~L~~~gi~-~~~i~G~~~ 276 (404)
..++++|+||..-.........|+..|++ +..++|+..
T Consensus 80 ~~~~~ii~yC~sG~~A~~~~~~L~~lG~~~v~~y~Gs~~ 118 (120)
T d1urha2 80 SYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWS 118 (120)
T ss_dssp CSSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCC
T ss_pred CccCceEEEccchhHHHHHHHHHHHcCCCCceEcCCChh
Confidence 35678999999876677777788888986 666788864
No 53
>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]}
Probab=25.66 E-value=58 Score=23.36 Aligned_cols=89 Identities=15% Similarity=0.163 Sum_probs=39.1
Q ss_pred CCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCC-CCceEEEeeccccc----cCCCCCCCCE
Q psy1089 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGS-TEWGVFLLSTRAGG----QGLNLTAADT 314 (404)
Q Consensus 240 ~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~-~~~~vlLis~~a~g----~GlnL~~a~~ 314 (404)
.|-.|..++.....++.+. ...+..+.++-.+|...-...+...+.. +...+++++..... .++.+ +|+.
T Consensus 25 ~g~~v~~a~~~~~al~~l~----~~~~dlillD~~mp~~~G~~~~~~~r~~~~~~~ii~lt~~~~~~~~~~~~~~-Ga~~ 99 (121)
T d1mvoa_ 25 SGYDVITASDGEEALKKAE----TEKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILMLTAKDEEFDKVLGLEL-GADD 99 (121)
T ss_dssp TTCEEEEESSHHHHHHHHH----HHCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEECTTCCCCHHHHHHT-TCCE
T ss_pred CCCEEEEECCHHHHHHHHh----cccccEEEecccccCCCCchhhhhhhccCCCCEEEEEEeeCCHHHHHHHHHC-CCCE
Confidence 4556666555555444443 2345566655555443333333333322 23445555433211 11111 2222
Q ss_pred EEEecCCCCchhHHHHHHhhh
Q psy1089 315 CILYDSDWNPQVDIQAEARCH 335 (404)
Q Consensus 315 VI~~d~~wnp~~~~Qa~gR~~ 335 (404)
++--|+++.....++..+.
T Consensus 100 --yl~KP~~~~~L~~~i~~~l 118 (121)
T d1mvoa_ 100 --YMTKPFSPREVNARVKAIL 118 (121)
T ss_dssp --EEESSCCHHHHHHHHHHHH
T ss_pred --EEECCCCHHHHHHHHHHHH
Confidence 3344566665555554443
No 54
>d2obba1 c.108.1.25 (A:1-122) Hypothetical protein BT0820 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=25.44 E-value=41 Score=24.88 Aligned_cols=42 Identities=21% Similarity=0.338 Sum_probs=31.1
Q ss_pred HHHHHHHhhhCCCeEEEEecchHH-HHHHHHHHHhcCCceEec
Q psy1089 230 LNQLLHKLKQTNHKTLVFSTMVKV-LNFIEELCVLENYNYYRL 271 (404)
Q Consensus 230 L~~ll~~l~~~~~KvlIFs~~~~~-l~~L~~~L~~~gi~~~~i 271 (404)
..+.|..+...|.+++||+..... .+...+.|...|+++-.+
T Consensus 26 ~Ie~l~~L~~~G~~IIi~TaR~~~~~~~t~~wL~~~~i~yd~i 68 (122)
T d2obba1 26 AVETLKLLQQEKHRLILWSVREGELLDEAIEWCRARGLEFYAA 68 (122)
T ss_dssp HHHHHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTTCCCSEE
T ss_pred HHHHHHHHHHCCCeEEEEecCCCcchHHHHHHHHHcCCCceeh
Confidence 456667777899999999876543 455667888888887555
No 55
>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}
Probab=24.25 E-value=86 Score=20.64 Aligned_cols=57 Identities=9% Similarity=0.125 Sum_probs=38.0
Q ss_pred eEEEEecch-HHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeec
Q psy1089 243 KTLVFSTMV-KVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLST 300 (404)
Q Consensus 243 KvlIFs~~~-~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~ 300 (404)
.|.||+... .........|...|++|..++=......++.... +......+++++..
T Consensus 2 ~I~iys~~~Cp~C~~ak~~L~~~~i~y~~~di~~~~~~~~~~~~-~~g~~tvP~i~i~~ 59 (82)
T d1fova_ 2 NVEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIK-RSGRTTVPQIFIDA 59 (82)
T ss_dssp CEEEEECSSCHHHHHHHHHHHHHTCCCEEEECTTCSHHHHHHHH-HHSSCCSCEEEETT
T ss_pred cEEEEeCCCCHhHHHHHHHHHHcCCCeEEEeccchHHHHHHHHH-HhCCCCCCeEEECC
Confidence 367887654 3467788889999999998877666666665554 43333455666543
No 56
>d1e0ca2 c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacter vinelandii [TaxId: 354]}
Probab=24.19 E-value=45 Score=24.90 Aligned_cols=46 Identities=11% Similarity=0.069 Sum_probs=31.8
Q ss_pred HHHHHHHh-hhCCCeEEEEecchHHHHHHHHHHHhcCCc-eEeccCCc
Q psy1089 230 LNQLLHKL-KQTNHKTLVFSTMVKVLNFIEELCVLENYN-YYRLHGSI 275 (404)
Q Consensus 230 L~~ll~~l-~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~-~~~i~G~~ 275 (404)
+.+++..+ ...++.+|+||..-.........|+..|++ +..++|+.
T Consensus 76 l~~~~~~~gi~~~~~vV~yC~~G~~a~~~~~~l~~~G~~~v~~ydGg~ 123 (136)
T d1e0ca2 76 IAGRLEELGITPDKEIVTHCQTHHRSGLTYLIAKALGYPRVKGYAGSW 123 (136)
T ss_dssp HHHHHHHTTCCTTSEEEEECSSSSHHHHHHHHHHHTTCSCEEECSSHH
T ss_pred HhhhhhhcccCCCCceEEeCCChHHHHHHHHHHHHcCCCCcEEecCCH
Confidence 44444443 345678899998766666677788889995 66678865
No 57
>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}
Probab=22.65 E-value=1.2e+02 Score=21.42 Aligned_cols=91 Identities=14% Similarity=0.107 Sum_probs=56.3
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCC-CCceEEEeeccc----cccCCCCCCCC
Q psy1089 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGS-TEWGVFLLSTRA----GGQGLNLTAAD 313 (404)
Q Consensus 239 ~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~-~~~~vlLis~~a----~g~GlnL~~a~ 313 (404)
..|-.|..++.....++.+ ....+..+.++-.+|...-...+...+.. +.+.+++++... .-.++..- |+
T Consensus 23 ~~g~~v~~a~~~~~al~~l----~~~~~dlillD~~mp~~~g~~~~~~lr~~~~~~piI~lt~~~~~~~~~~~~~~G-a~ 97 (122)
T d1kgsa2 23 KEMFTVDVCYDGEEGMYMA----LNEPFDVVILDIMLPVHDGWEILKSMRESGVNTPVLMLTALSDVEYRVKGLNMG-AD 97 (122)
T ss_dssp HTTCEEEEESSHHHHHHHH----HHSCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEESSCHHHHHHHTCCCC-CS
T ss_pred HCCCEEEEEcchHHHHHHH----HhhCccccccccccccchhHHHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHHcC-Cc
Confidence 4678888887776665544 34677888888777665555555555533 356777777543 33444433 33
Q ss_pred EEEEecCCCCchhHHHHHHhhhc
Q psy1089 314 TCILYDSDWNPQVDIQAEARCHR 336 (404)
Q Consensus 314 ~VI~~d~~wnp~~~~Qa~gR~~R 336 (404)
. ++--|+++.....++.++-|
T Consensus 98 ~--yl~KP~~~~~L~~~i~~~l~ 118 (122)
T d1kgsa2 98 D--YLPKPFDLRELIARVRALIR 118 (122)
T ss_dssp E--EEESSCCHHHHHHHHHHHHH
T ss_pred e--eecCCCCHHHHHHHHHHHHH
Confidence 3 33457888887777766554
No 58
>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]}
Probab=22.45 E-value=82 Score=23.52 Aligned_cols=57 Identities=9% Similarity=-0.023 Sum_probs=41.7
Q ss_pred CCeEEEEecc----hHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecc
Q psy1089 241 NHKTLVFSTM----VKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTR 301 (404)
Q Consensus 241 ~~KvlIFs~~----~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~ 301 (404)
..|+|+.|-. .--..+++..|+..|+.+..+-..+|.++-.+++.+.+. .++.+|.-
T Consensus 3 k~kVvi~~~~gD~H~lG~~mva~~l~~~G~~V~~LG~~~p~e~iv~a~~~~~~----d~v~lS~~ 63 (137)
T d1ccwa_ 3 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETKA----DAILVSSL 63 (137)
T ss_dssp CCEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHTC----SEEEEEEC
T ss_pred CCEEEEEecCCChhHHHHHHHHHHHHHCCCeEEecccccCHHHHHHHHHhcCC----CEEEEeec
Confidence 4578887653 334778899999999999888888998888777777664 34555533
No 59
>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}
Probab=22.38 E-value=94 Score=19.93 Aligned_cols=57 Identities=12% Similarity=0.072 Sum_probs=38.0
Q ss_pred eEEEEecch-HHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCCCceEEEeecc
Q psy1089 243 KTLVFSTMV-KVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTR 301 (404)
Q Consensus 243 KvlIFs~~~-~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~~~~vlLis~~ 301 (404)
+++||+... .........|...|++|..++=....+.+ ..+..+... ..+++++...
T Consensus 2 ~v~iYt~~~C~~C~~ak~~L~~~~i~~~~~~i~~~~~~~-~~~~~~g~~-tvP~i~i~g~ 59 (74)
T d1r7ha_ 2 SITLYTKPACVQCTATKKALDRAGLAYNTVDISLDDEAR-DYVMALGYV-QAPVVEVDGE 59 (74)
T ss_dssp CEEEEECTTCHHHHHHHHHHHHTTCCCEEEETTTCHHHH-HHHHHTTCB-CCCEEEETTE
T ss_pred EEEEEeCCCChhHHHHHHHHHHcCCceEEEEccCCHHHH-HHHHHhCCC-CcCEEEECCE
Confidence 578888654 45788889999999999888766665444 344555333 4556665433
No 60
>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]}
Probab=21.85 E-value=90 Score=22.23 Aligned_cols=92 Identities=8% Similarity=-0.017 Sum_probs=47.4
Q ss_pred hCCCeEEEEecchHHHHHHHHHHHhcCCceEeccCCcCHHHHHHHHHHHhCCC---CceEEEeeccccccCCC--C-CCC
Q psy1089 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGST---EWGVFLLSTRAGGQGLN--L-TAA 312 (404)
Q Consensus 239 ~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~~i~G~~~~~~R~~~i~~F~~~~---~~~vlLis~~a~g~Gln--L-~~a 312 (404)
..|-.+..++.....++.+.. ..+..+.++-.+|.-.-.+.+...++.+ .+.+++++......-.. + .++
T Consensus 23 ~~g~~v~~a~~~~~al~~~~~----~~~dlil~D~~mp~~dG~el~~~ir~~~~~~~iPii~lt~~~~~~~~~~~~~~G~ 98 (123)
T d1mb3a_ 23 AQGYETLQTREGLSALSIARE----NKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGGC 98 (123)
T ss_dssp HTTCEEEEESCHHHHHHHHHH----HCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEEEEC------CHHHHHHHTC
T ss_pred HCCCEEEEECCHHHHHHHHHh----CCCCEEEEEeccCCCcHHHHHHHHHhCCCcCCCCeEEEEEecCHHHHHHHHHcCC
Confidence 356677766665555554433 3566777776666555555555554332 45666665432111100 0 133
Q ss_pred CEEEEecCCCCchhHHHHHHhhhc
Q psy1089 313 DTCILYDSDWNPQVDIQAEARCHR 336 (404)
Q Consensus 313 ~~VI~~d~~wnp~~~~Qa~gR~~R 336 (404)
+. ++.-|+++....+++.++-|
T Consensus 99 ~~--~l~KP~~~~~L~~~i~~~l~ 120 (123)
T d1mb3a_ 99 EA--YISKPISVVHFLETIKRLLE 120 (123)
T ss_dssp SE--EECSSCCHHHHHHHHHHHHS
T ss_pred CE--EEECCCCHHHHHHHHHHHHh
Confidence 33 34557777777777666643
No 61
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Probab=21.61 E-value=1.9e+02 Score=23.23 Aligned_cols=92 Identities=12% Similarity=0.067 Sum_probs=59.1
Q ss_pred cCCcHHH-HHHHHHHHhhh-----------CCCeEEEEecchHHHHHHHHHHH----hcCCceEeccCCcCHHHHHHHHH
Q psy1089 222 SSSGKMI-VLNQLLHKLKQ-----------TNHKTLVFSTMVKVLNFIEELCV----LENYNYYRLHGSIRNEERNDAVQ 285 (404)
Q Consensus 222 ~~S~Kl~-~L~~ll~~l~~-----------~~~KvlIFs~~~~~l~~L~~~L~----~~gi~~~~i~G~~~~~~R~~~i~ 285 (404)
..|||.- ++..+|..+.. .+.++||.+.....+.-+...+. ..++....+.|+.......+.
T Consensus 67 TGsGKTlayllp~l~~l~~~~~~~~~~~~~~~~~alil~pt~el~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-- 144 (238)
T d1wrba1 67 TGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIRE-- 144 (238)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHH--
T ss_pred CCCCcceeeHHHHHHHHHhcccccccccCCCCceEEEeccchhhhcchheeeeecccCCCcEEEEEeccchhhHHHhh--
Confidence 4588865 45677766532 24579999999888777766553 457788888888776554332
Q ss_pred HHhCCCCceEEEeeccccc-----cCCCCCCCCEEEEe
Q psy1089 286 QFNGSTEWGVFLLSTRAGG-----QGLNLTAADTCILY 318 (404)
Q Consensus 286 ~F~~~~~~~vlLis~~a~g-----~GlnL~~a~~VI~~ 318 (404)
... .+.+++.++...- ..+++....++|+=
T Consensus 145 -~~~--~~~ivV~TP~~l~~~~~~~~~~l~~v~~lViD 179 (238)
T d1wrba1 145 -VQM--GCHLLVATPGRLVDFIEKNKISLEFCKYIVLD 179 (238)
T ss_dssp -HSS--CCSEEEECHHHHHHHHHTTSBCCTTCCEEEEE
T ss_pred -ccc--CCceeecCHHHHHhHHccCceeccccceeeee
Confidence 222 3567777765432 35567777777753
No 62
>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=21.53 E-value=59 Score=24.11 Aligned_cols=43 Identities=7% Similarity=-0.069 Sum_probs=31.8
Q ss_pred HHHHhhh-CCCeEEEEecchHHHHHHHHHHHhcCCc--eEeccCCc
Q psy1089 233 LLHKLKQ-TNHKTLVFSTMVKVLNFIEELCVLENYN--YYRLHGSI 275 (404)
Q Consensus 233 ll~~l~~-~~~KvlIFs~~~~~l~~L~~~L~~~gi~--~~~i~G~~ 275 (404)
.+..+.. ....+++||............|...|+. +..+.|++
T Consensus 71 ~~~~l~~~~~~~iV~~C~~g~rs~~aa~~L~~~G~~~~V~~L~GG~ 116 (136)
T d1yt8a1 71 RVAELAPDPRTRVIVNCAGRTRSIIGTQSLLNAGIPNPVAALRNGT 116 (136)
T ss_dssp HHHHHCCSTTSEEEEECSSSHHHHHHHHHHHHTTCSSCEEEETTHH
T ss_pred HhhcccccccceEEEEcCCCCchHHHHHHHHHcCCCceEEEeCCcH
Confidence 3444433 4567999999888888888899999983 66788875
No 63
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}
Probab=20.68 E-value=1.1e+02 Score=25.02 Aligned_cols=49 Identities=18% Similarity=0.162 Sum_probs=38.1
Q ss_pred ccCCcHHH-HHHHHHHHhhhCCCeEEEEecchHHHHHHHHHHHhcCCceE
Q psy1089 221 VSSSGKMI-VLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYY 269 (404)
Q Consensus 221 ~~~S~Kl~-~L~~ll~~l~~~~~KvlIFs~~~~~l~~L~~~L~~~gi~~~ 269 (404)
...|||-. ++..++......+.++||.+.....+.-+.+.|+..++.+.
T Consensus 17 ~TGsGKT~~~l~~~~~~~~~~~~~~lvi~Ptr~La~q~~~~l~~~~~~~~ 66 (305)
T d2bmfa2 17 HPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRGLPIRYQ 66 (305)
T ss_dssp CTTSSTTTTHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHTTTSCCBCC
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCEEEEEccHHHHHHHHHHHHhcCCccee
Confidence 45689984 56677777777788999999999988888888877665543
Done!