Your job contains 1 sequence.
>psy1089
MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTIGENREQVAEYF
NTTVNTSSSSDSSGNESYIWFSEESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNK
TYDLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEKNVDEILHHV
NVKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQT
NHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLST
RAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFT
IDSSGSVSWSSQSVKEKLPIGFMCVTGSFLKSSSFFTYLQTYVW
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy1089
(404 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
RGD|1309820 - symbol:Hells "helicase, lymphoid specific" ... 458 1.6e-55 2
UNIPROTKB|F1P5V4 - symbol:HELLS "Uncharacterized protein"... 454 1.0e-54 2
UNIPROTKB|Q9NRZ9 - symbol:HELLS "Lymphoid-specific helica... 461 3.1e-54 2
UNIPROTKB|E2QW28 - symbol:HELLS "Uncharacterized protein"... 460 4.0e-54 2
UNIPROTKB|E1BCV0 - symbol:HELLS "Uncharacterized protein"... 457 6.9e-54 2
UNIPROTKB|F1SC64 - symbol:HELLS "Uncharacterized protein"... 457 1.1e-53 2
MGI|MGI:106209 - symbol:Hells "helicase, lymphoid specifi... 455 1.2e-53 2
ZFIN|ZDB-GENE-030131-9923 - symbol:hells "helicase, lymph... 445 4.2e-52 2
UNIPROTKB|I3LTT5 - symbol:SMARCA1 "Uncharacterized protei... 417 1.0e-47 2
UNIPROTKB|K7GNV1 - symbol:SMARCA1 "Uncharacterized protei... 417 5.5e-47 2
RGD|2323132 - symbol:LOC100359912 "SWI/SNF-related matrix... 406 3.7e-46 2
MGI|MGI:1935127 - symbol:Smarca1 "SWI/SNF related, matrix... 403 1.6e-45 2
UNIPROTKB|E2QVR5 - symbol:SMARCA1 "Uncharacterized protei... 407 1.8e-45 2
MGI|MGI:1935129 - symbol:Smarca5 "SWI/SNF related, matrix... 406 2.1e-45 2
RGD|1308832 - symbol:Smarca5 "SWI/SNF related, matrix ass... 406 2.1e-45 2
UNIPROTKB|O60264 - symbol:SMARCA5 "SWI/SNF-related matrix... 406 2.1e-45 2
UNIPROTKB|H0YJG4 - symbol:CHD8 "Chromodomain-helicase-DNA... 411 4.6e-45 2
UNIPROTKB|F1N052 - symbol:SMARCA5 "Uncharacterized protei... 402 5.7e-45 2
UNIPROTKB|E2QWV0 - symbol:SMARCA5 "Uncharacterized protei... 402 5.7e-45 2
UNIPROTKB|F1RRG9 - symbol:SMARCA5 "Uncharacterized protei... 402 5.7e-45 2
UNIPROTKB|E1C0M8 - symbol:SMARCA5 "Uncharacterized protei... 400 8.8e-45 2
DICTYBASE|DDB_G0293012 - symbol:DDB_G0293012 "CHR group p... 425 1.2e-44 2
UNIPROTKB|F1P3Q4 - symbol:SMARCA1 "Uncharacterized protei... 397 1.9e-44 2
UNIPROTKB|F6TQG2 - symbol:SMARCA1 "Probable global transc... 391 2.7e-44 2
UNIPROTKB|P28370 - symbol:SMARCA1 "Probable global transc... 391 3.3e-44 2
UNIPROTKB|K7GMM0 - symbol:SMARCA1 "Uncharacterized protei... 390 4.3e-44 2
UNIPROTKB|K7GLQ2 - symbol:SMARCA1 "Uncharacterized protei... 390 4.5e-44 2
UNIPROTKB|E1BS47 - symbol:CHD7 "Chromodomain-helicase-DNA... 406 9.1e-44 2
UNIPROTKB|E2QUR1 - symbol:CHD8 "Uncharacterized protein" ... 411 1.2e-43 2
UNIPROTKB|F1RTI9 - symbol:SMARCA1 "Uncharacterized protei... 386 1.2e-43 2
WB|WBGene00007053 - symbol:chd-7 species:6239 "Caenorhabd... 421 1.2e-43 2
UNIPROTKB|Q9HCK8 - symbol:CHD8 "Chromodomain-helicase-DNA... 411 1.8e-43 2
UNIPROTKB|F1NVT7 - symbol:CHD6 "Uncharacterized protein" ... 397 2.6e-43 2
UNIPROTKB|F1MLB2 - symbol:CHD8 "Uncharacterized protein" ... 409 2.8e-43 2
UNIPROTKB|F1S8J5 - symbol:CHD8 "Uncharacterized protein" ... 409 2.9e-43 2
RGD|620696 - symbol:Chd8 "chromodomain helicase DNA bindi... 409 3.0e-43 2
MGI|MGI:1915022 - symbol:Chd8 "chromodomain helicase DNA ... 409 3.0e-43 2
UNIPROTKB|E2QUS7 - symbol:CHD8 "Uncharacterized protein" ... 409 3.0e-43 2
FB|FBgn0011604 - symbol:Iswi "Imitation SWI" species:7227... 390 4.3e-43 2
UNIPROTKB|F1NSG3 - symbol:CHD7 "Chromodomain-helicase-DNA... 406 4.3e-43 2
UNIPROTKB|G4NCV5 - symbol:MGG_01012 "ISWI chromatin-remod... 392 4.8e-43 2
MGI|MGI:2444748 - symbol:Chd7 "chromodomain helicase DNA ... 408 5.4e-43 2
UNIPROTKB|Q9P2D1 - symbol:CHD7 "Chromodomain-helicase-DNA... 408 5.5e-43 2
RGD|1561046 - symbol:Smarca1 "SWI/SNF related, matrix ass... 378 7.6e-43 2
UNIPROTKB|E1BPM4 - symbol:CHD7 "Uncharacterized protein" ... 406 8.5e-43 2
UNIPROTKB|F1PWD8 - symbol:CHD7 "Uncharacterized protein" ... 406 8.9e-43 2
UNIPROTKB|Q06A37 - symbol:CHD7 "Chromodomain-helicase-DNA... 406 9.0e-43 2
ZFIN|ZDB-GENE-070912-179 - symbol:chd7 "chromodomain heli... 403 1.0e-42 2
UNIPROTKB|B5DE69 - symbol:chd8 "Chromodomain-helicase-DNA... 402 1.1e-42 2
UNIPROTKB|F1NLW6 - symbol:CHD6 "Uncharacterized protein" ... 397 1.1e-42 2
UNIPROTKB|F1NLV5 - symbol:CHD6 "Uncharacterized protein" ... 397 1.1e-42 2
UNIPROTKB|H3BTW3 - symbol:CHD9 "Chromodomain-helicase-DNA... 399 1.1e-42 2
UNIPROTKB|F1PTH3 - symbol:CHD6 "Uncharacterized protein" ... 400 1.1e-42 2
UNIPROTKB|J9P0F6 - symbol:CHD6 "Uncharacterized protein" ... 400 1.1e-42 2
UNIPROTKB|Q8TD26 - symbol:CHD6 "Chromodomain-helicase-DNA... 400 1.1e-42 2
ZFIN|ZDB-GENE-021125-1 - symbol:smarca5 "SWI/SNF related,... 385 1.5e-42 2
ZFIN|ZDB-GENE-030131-6320 - symbol:chd8 "chromodomain hel... 400 1.5e-42 2
RGD|1311921 - symbol:Chd7 "chromodomain helicase DNA bind... 403 1.8e-42 2
ZFIN|ZDB-GENE-070705-296 - symbol:si:dkey-148b12.1 "si:dk... 382 2.0e-42 2
GENEDB_PFALCIPARUM|PF11_0053 - symbol:PF11_0053 "PfSNF2L"... 377 2.9e-42 2
UNIPROTKB|Q8IIW0 - symbol:PF11_0053 "PfSNF2L" species:363... 377 2.9e-42 2
ZFIN|ZDB-GENE-030131-497 - symbol:chd9 "chromodomain heli... 406 3.7e-42 2
UNIPROTKB|F1N734 - symbol:CHD6 "Uncharacterized protein" ... 395 3.9e-42 2
TAIR|locus:2173644 - symbol:CHR1 "chromatin remodeling 1"... 370 4.5e-42 2
RGD|1594200 - symbol:LOC680231 "similar to chromodomain h... 401 1.2e-41 2
WB|WBGene00002169 - symbol:isw-1 species:6239 "Caenorhabd... 377 1.3e-41 2
MGI|MGI:1924001 - symbol:Chd9 "chromodomain helicase DNA ... 399 1.9e-41 2
UNIPROTKB|Q3L8U1 - symbol:CHD9 "Chromodomain-helicase-DNA... 399 1.9e-41 2
UNIPROTKB|E1BDZ3 - symbol:CHD9 "Uncharacterized protein" ... 399 1.9e-41 2
UNIPROTKB|E2RDK8 - symbol:CHD9 "Uncharacterized protein" ... 399 1.9e-41 2
TAIR|locus:2182978 - symbol:CHR17 "chromatin remodeling f... 364 2.8e-41 2
UNIPROTKB|Q9NW36 - symbol:HELLS "cDNA FLJ10339 fis, clone... 435 5.9e-41 1
FB|FBgn0086902 - symbol:kis "kismet" species:7227 "Drosop... 405 6.6e-41 2
UNIPROTKB|F1RT88 - symbol:CHD7 "Uncharacterized protein" ... 387 9.0e-41 2
UNIPROTKB|E1BS48 - symbol:CHD9 "Uncharacterized protein" ... 391 1.0e-40 2
SGD|S000000449 - symbol:ISW1 "ATPase subunit of imitation... 376 1.1e-40 2
FB|FBgn0023395 - symbol:Chd3 "Chd3" species:7227 "Drosoph... 370 1.4e-40 2
UNIPROTKB|I3LRQ2 - symbol:CHD2 "Uncharacterized protein" ... 380 1.6e-40 2
DICTYBASE|DDB_G0280705 - symbol:DDB_G0280705 "CHR group p... 400 1.7e-40 2
UNIPROTKB|F1NS62 - symbol:CHD1L "Uncharacterized protein"... 370 1.8e-40 2
DICTYBASE|DDB_G0284171 - symbol:DDB_G0284171 "CHR group p... 375 2.6e-40 2
UNIPROTKB|D4AD08 - symbol:Chd2 "Chromodomain helicase DNA... 385 2.9e-40 2
WB|WBGene00002637 - symbol:let-418 species:6239 "Caenorha... 385 3.6e-40 2
UNIPROTKB|G5EBZ4 - symbol:let-418 "Protein let-418" speci... 385 3.6e-40 2
UNIPROTKB|J9NSS6 - symbol:CHD2 "Uncharacterized protein" ... 380 4.2e-40 2
WB|WBGene00000482 - symbol:chd-3 species:6239 "Caenorhabd... 382 5.6e-40 2
UNIPROTKB|Q22516 - symbol:chd-3 "Chromodomain-helicase-DN... 382 5.6e-40 2
UNIPROTKB|E1C1A9 - symbol:CHD2 "Uncharacterized protein" ... 381 6.5e-40 2
DICTYBASE|DDB_G0292948 - symbol:isw "CHR group protein" s... 369 7.7e-40 2
UNIPROTKB|J9NX79 - symbol:CHD2 "Uncharacterized protein" ... 380 7.7e-40 2
UNIPROTKB|I3LQZ8 - symbol:CHD2 "Uncharacterized protein" ... 380 8.0e-40 2
UNIPROTKB|O14647 - symbol:CHD2 "Chromodomain-helicase-DNA... 380 9.7e-40 2
UNIPROTKB|E2R5Z7 - symbol:CHD2 "Uncharacterized protein" ... 380 9.7e-40 2
UNIPROTKB|F1SA77 - symbol:CHD2 "Uncharacterized protein" ... 380 9.7e-40 2
UNIPROTKB|J9PA90 - symbol:CHD2 "Uncharacterized protein" ... 380 9.8e-40 2
ZFIN|ZDB-GENE-050419-256 - symbol:chd2 "chromodomain heli... 376 2.0e-39 2
UNIPROTKB|G3MXX3 - symbol:CHD2 "Uncharacterized protein" ... 375 3.2e-39 2
SGD|S000000966 - symbol:CHD1 "Chromatin remodeler that re... 374 4.6e-39 2
POMBASE|SPAC1783.05 - symbol:hrp1 "ATP-dependent DNA heli... 377 6.0e-39 2
UNIPROTKB|F5GWX5 - symbol:CHD4 "Chromodomain-helicase-DNA... 370 6.0e-39 2
WARNING: Descriptions of 433 database sequences were not reported due to the
limiting value of parameter V = 100.
>RGD|1309820 [details] [associations]
symbol:Hells "helicase, lymphoid specific" species:10116 "Rattus
norvegicus" [GO:0000775 "chromosome, centromeric region"
evidence=ISO] [GO:0001655 "urogenital system development"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005721 "centromeric heterochromatin"
evidence=ISO] [GO:0006306 "DNA methylation" evidence=ISO]
[GO:0006342 "chromatin silencing" evidence=ISO] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISO]
[GO:0007275 "multicellular organismal development" evidence=ISO]
[GO:0010216 "maintenance of DNA methylation" evidence=ISO]
[GO:0031508 "centromeric heterochromatin assembly" evidence=ISO]
[GO:0043066 "negative regulation of apoptotic process"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1309820
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216 GO:GO:0006346
GO:GO:0046651 IPI:IPI00768565 PRIDE:F1M8B3
Ensembl:ENSRNOT00000017812 OMA:XVERVEL Uniprot:F1M8B3
Length = 494
Score = 458 (166.3 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
Identities = 91/184 (49%), Positives = 126/184 (68%)
Query: 170 EKNVDEILHHVNVKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIV 229
E N+ I VN+K+ N+ M+LR +HPY+I P V +E DE +V++SGK ++
Sbjct: 203 EGNIP-IESEVNLKLQNIMMLLRKCCNHPYMIEYPIDPVT--QEFKIDEELVTNSGKFLI 259
Query: 230 LNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG 289
L+++L +LK+ HK LVFS M +L+ + + C L N+ + RL GS+ ER + FN
Sbjct: 260 LDRMLPELKKRCHKVLVFSQMTSMLDILMDYCHLRNFTFSRLDGSMSYSEREKNIYSFNT 319
Query: 290 STEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLV 349
E +FL+STRAGG G+NLTAADT I+YDSDWNPQ D+QA+ RCHRIGQTKPV +YRLV
Sbjct: 320 DPEVFLFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLV 379
Query: 350 SHST 353
+ +T
Sbjct: 380 TANT 383
Score = 132 (51.5 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
Identities = 24/49 (48%), Positives = 33/49 (67%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H IL PF LRRLK DV L +PPK+ V+ P+ QE+ YT ++ +TI
Sbjct: 96 LHQILTPFLLRRLKSDVALEVPPKREVVVYAPLCNKQEIFYTAIVNRTI 144
Score = 39 (18.8 bits), Expect = 9.7e-46, Sum P(2) = 9.7e-46
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 80 WFSEESTLSNASSVKAGKREQTI 102
WF S A + A +REQ +
Sbjct: 70 WFDITSLSETAEDIIAKEREQNV 92
>UNIPROTKB|F1P5V4 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005721 "centromeric
heterochromatin" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0010216 "maintenance of DNA
methylation" evidence=IEA] [GO:0031508 "centromeric heterochromatin
assembly" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0046651 "lymphocyte
proliferation" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216 OMA:ETFYTAI
GO:GO:0006346 GO:GO:0046651 GeneTree:ENSGT00550000075106
EMBL:AADN02027839 EMBL:AADN02027838 IPI:IPI00823178
Ensembl:ENSGALT00000008749 ArrayExpress:F1P5V4 Uniprot:F1P5V4
Length = 839
Score = 454 (164.9 bits), Expect = 1.0e-54, Sum P(2) = 1.0e-54
Identities = 85/174 (48%), Positives = 123/174 (70%)
Query: 180 VNVKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQ 239
VN+K+ N+ M+LR +HPYLI P + ++ DE++V +SGK ++L+++L +LK+
Sbjct: 556 VNLKLQNIMMLLRKCCNHPYLIEYP--LDPATQQFKVDEDLVKNSGKFLLLDRMLPELKK 613
Query: 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLS 299
HK L+FS M +L+ + + C L + + RL GS+ +R + + QFN E +FL+S
Sbjct: 614 RGHKVLMFSQMTMMLDILMDYCYLRGFKFSRLDGSMSYSDREENMHQFNNDPEVFLFLVS 673
Query: 300 TRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHST 353
TRAGG G+NLTAADT I+YDSDWNPQ D+QA+ RCHRIGQTKPV +YRLV+ +T
Sbjct: 674 TRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANT 727
Score = 144 (55.7 bits), Expect = 1.0e-54, Sum P(2) = 1.0e-54
Identities = 29/62 (46%), Positives = 38/62 (61%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI----GENREQV 56
+H IL PF LRRLK DV L +PPK+ V+ P+ QE YT ++ +TI G N E+V
Sbjct: 439 LHQILTPFLLRRLKSDVALEVPPKREVVVYAPLAKKQETFYTAIVNRTIRNLLGNNEEEV 498
Query: 57 AE 58
E
Sbjct: 499 VE 500
Score = 44 (20.5 bits), Expect = 3.3e-44, Sum P(2) = 3.3e-44
Identities = 19/82 (23%), Positives = 37/82 (45%)
Query: 93 VKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDTEVQVEDKIK 152
+K+ K + D + K+++ + TY+++EI + +++ + V K K
Sbjct: 107 LKSAKGQNPADGKEEKSATKKKRGRDDGTYNISEI-------MSKEEI----LSVAKKSK 155
Query: 153 VEPCENSSNAQDVPSAEEKNVD 174
VE + SS P +KN D
Sbjct: 156 VENQDESSAGNLCPEDLQKNGD 177
Score = 38 (18.4 bits), Expect = 1.4e-43, Sum P(2) = 1.4e-43
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 80 WFSEESTLSNASSVKAGKREQTI 102
WF S A + A ++EQ I
Sbjct: 413 WFDITSITETAEDIIAKEKEQNI 435
>UNIPROTKB|Q9NRZ9 [details] [associations]
symbol:HELLS "Lymphoid-specific helicase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0051301 "cell
division" evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005721
"centromeric heterochromatin" evidence=ISS] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISS]
[GO:0007275 "multicellular organismal development" evidence=ISS]
[GO:0010216 "maintenance of DNA methylation" evidence=ISS]
[GO:0031508 "centromeric heterochromatin assembly" evidence=ISS]
[GO:0000775 "chromosome, centromeric region" evidence=ISS]
[GO:0046651 "lymphocyte proliferation" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
EMBL:CH471066 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 GO:GO:0006346 GO:GO:0046651 EMBL:AF155827
EMBL:AB102717 EMBL:AB102718 EMBL:AB102719 EMBL:AB102720
EMBL:AB102721 EMBL:AB102722 EMBL:AK314485 EMBL:AB113249
EMBL:BX538033 EMBL:AL138759 EMBL:BC015477 EMBL:BC029381
EMBL:BC030963 EMBL:BC031004 EMBL:AY007108 EMBL:AB074174
IPI:IPI00010590 IPI:IPI00807418 IPI:IPI00807455 IPI:IPI00807553
IPI:IPI00807574 IPI:IPI00807597 IPI:IPI00807667 IPI:IPI00807698
IPI:IPI00807726 RefSeq:NP_060533.2 UniGene:Hs.655830
ProteinModelPortal:Q9NRZ9 SMR:Q9NRZ9 IntAct:Q9NRZ9 STRING:Q9NRZ9
PhosphoSite:Q9NRZ9 DMDM:74761670 PaxDb:Q9NRZ9 PRIDE:Q9NRZ9
DNASU:3070 Ensembl:ENST00000348459 Ensembl:ENST00000394036
Ensembl:ENST00000394044 Ensembl:ENST00000394045 GeneID:3070
KEGG:hsa:3070 UCSC:uc001kjs.3 UCSC:uc009xul.3 UCSC:uc009xum.3
CTD:3070 GeneCards:GC10P096305 H-InvDB:HIX0017337 HGNC:HGNC:4861
HPA:CAB004491 MIM:603946 neXtProt:NX_Q9NRZ9 PharmGKB:PA35054
HOVERGEN:HBG060049 OrthoDB:EOG4SN1N4 PhylomeDB:Q9NRZ9 ChiTaRS:HELLS
GenomeRNAi:3070 NextBio:12147 ArrayExpress:Q9NRZ9 Bgee:Q9NRZ9
Genevestigator:Q9NRZ9 GermOnline:ENSG00000119969 Uniprot:Q9NRZ9
Length = 838
Score = 461 (167.3 bits), Expect = 3.1e-54, Sum P(2) = 3.1e-54
Identities = 90/184 (48%), Positives = 127/184 (69%)
Query: 170 EKNVDEILHHVNVKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIV 229
E N+ + VN+K+ N+ M+LR +HPYLI P V +E DE +V++SGK ++
Sbjct: 547 EVNIP-VESEVNLKLQNIMMLLRKCCNHPYLIEYPIDPVT--QEFKIDEELVTNSGKFLI 603
Query: 230 LNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG 289
L+++L +LK+ HK L+FS M +L+ + + C L ++N+ RL GS+ ER + FN
Sbjct: 604 LDRMLPELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNT 663
Query: 290 STEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLV 349
E +FL+STRAGG G+NLTAADT I+YDSDWNPQ D+QA+ RCHRIGQTKPV +YRLV
Sbjct: 664 DPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLV 723
Query: 350 SHST 353
+ +T
Sbjct: 724 TANT 727
Score = 132 (51.5 bits), Expect = 3.1e-54, Sum P(2) = 3.1e-54
Identities = 24/49 (48%), Positives = 33/49 (67%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H IL PF LRRLK DV L +PPK+ V+ P+ QE+ YT ++ +TI
Sbjct: 440 LHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTI 488
Score = 40 (19.1 bits), Expect = 1.5e-44, Sum P(2) = 1.5e-44
Identities = 7/36 (19%), Positives = 24/36 (66%)
Query: 92 SVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEI 127
S+K K + +ID+++ ++++ +++Y+++E+
Sbjct: 106 SLKVKKGKNSIDASEEKPVMRKKRGREDESYNISEV 141
Score = 39 (18.8 bits), Expect = 1.9e-44, Sum P(2) = 1.9e-44
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 80 WFSEESTLSNASSVKAGKREQTI 102
WF S A + A +REQ +
Sbjct: 414 WFDITSLSETAEDIIAKEREQNV 436
>UNIPROTKB|E2QW28 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:ETFYTAI
GeneTree:ENSGT00550000075106 EMBL:AAEX03015428
Ensembl:ENSCAFT00000012889 Uniprot:E2QW28
Length = 839
Score = 460 (167.0 bits), Expect = 4.0e-54, Sum P(2) = 4.0e-54
Identities = 89/184 (48%), Positives = 126/184 (68%)
Query: 170 EKNVDEILHHVNVKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIV 229
E N+ + VN+K+ N+ M+LR +HPYLI P V +E DE +V++SGK ++
Sbjct: 548 ETNIP-VESEVNLKLQNIMMLLRKCCNHPYLIEYPIDPVT--QEFKIDEELVTNSGKFLI 604
Query: 230 LNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG 289
L+++L +LK HK L+FS M ++L+ + + C N+N+ RL GS+ ER + FN
Sbjct: 605 LDRMLPELKARGHKVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYSEREKNMHSFNT 664
Query: 290 STEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLV 349
+ +FL+STRAGG G+NLTAADT I+YDSDWNPQ D+QA+ RCHRIGQTKPV +YRLV
Sbjct: 665 DPDVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLV 724
Query: 350 SHST 353
+ +T
Sbjct: 725 TANT 728
Score = 132 (51.5 bits), Expect = 4.0e-54, Sum P(2) = 4.0e-54
Identities = 24/49 (48%), Positives = 33/49 (67%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H IL PF LRRLK DV L +PPK+ V+ P+ QE+ YT ++ +TI
Sbjct: 441 LHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTI 489
Score = 39 (18.8 bits), Expect = 2.4e-44, Sum P(2) = 2.4e-44
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 80 WFSEESTLSNASSVKAGKREQTI 102
WF S A + A +REQ +
Sbjct: 415 WFDITSLSETAEDIIAKEREQNV 437
>UNIPROTKB|E1BCV0 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:DAAA02058849 EMBL:DAAA02058850
EMBL:DAAA02058851 IPI:IPI00710948 Ensembl:ENSBTAT00000007848
Uniprot:E1BCV0
Length = 816
Score = 457 (165.9 bits), Expect = 6.9e-54, Sum P(2) = 6.9e-54
Identities = 86/174 (49%), Positives = 122/174 (70%)
Query: 180 VNVKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQ 239
VN+K+ N+ M+LR +HPYLI P V +E DE +V++SGK ++L+++L +LK
Sbjct: 534 VNLKLQNIMMLLRKCCNHPYLIEYPIDPVT--QEFKVDEELVTNSGKFLILDRMLPELKT 591
Query: 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLS 299
HK L+FS M ++L+ + + C N+N+ RL GS+ ER + FN + +FL+S
Sbjct: 592 RGHKVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYSEREKNIHSFNTDPDVFIFLVS 651
Query: 300 TRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHST 353
TRAGG G+NLTAADT I+YDSDWNPQ D+QA+ RCHRIGQT+PV +YRLV+ +T
Sbjct: 652 TRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTRPVVVYRLVTANT 705
Score = 132 (51.5 bits), Expect = 6.9e-54, Sum P(2) = 6.9e-54
Identities = 24/49 (48%), Positives = 33/49 (67%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H IL PF LRRLK DV L +PPK+ V+ P+ QE+ YT ++ +TI
Sbjct: 418 LHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIVNRTI 466
Score = 49 (22.3 bits), Expect = 3.7e-45, Sum P(2) = 3.7e-45
Identities = 19/85 (22%), Positives = 41/85 (48%)
Query: 99 EQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMI-----ERDDTSD--TEVQVEDKI 151
+Q ++ + ++ +R+K SL T D ID ++ + R+D S +EV +++I
Sbjct: 67 QQQLEEQKKKEKLERKKESLKVTKDKNSIDASEENAVIKKKRGREDESYNISEVMSKEEI 126
Query: 152 KVEPCENSSNAQDVPSAEEKNVDEI 176
+N +D S+ V+++
Sbjct: 127 LSVAKKNKKENEDESSSSNMCVEDL 151
Score = 41 (19.5 bits), Expect = 2.6e-44, Sum P(2) = 2.6e-44
Identities = 8/36 (22%), Positives = 24/36 (66%)
Query: 92 SVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEI 127
S+K K + +ID+++ K+++ +++Y+++E+
Sbjct: 85 SLKVTKDKNSIDASEENAVIKKKRGREDESYNISEV 120
Score = 39 (18.8 bits), Expect = 4.1e-44, Sum P(2) = 4.1e-44
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 80 WFSEESTLSNASSVKAGKREQTI 102
WF S A + A +REQ +
Sbjct: 392 WFDITSLSETAEDIIAKEREQNV 414
>UNIPROTKB|F1SC64 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:CU468514
Ensembl:ENSSSCT00000011474 Uniprot:F1SC64
Length = 838
Score = 457 (165.9 bits), Expect = 1.1e-53, Sum P(2) = 1.1e-53
Identities = 89/184 (48%), Positives = 126/184 (68%)
Query: 170 EKNVDEILHHVNVKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIV 229
E N+ + VN+K+ N+ M+LR +HPYLI P V +E DE +V++SGK ++
Sbjct: 547 ETNIP-VESEVNLKLQNIMMLLRKCCNHPYLIEYPIDPVT--QEFKIDEELVTNSGKFLI 603
Query: 230 LNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG 289
L+++L +LK HK L+FS M ++L+ + + C N+N+ RL GS+ ER + FN
Sbjct: 604 LDRMLPELKIRGHKVLLFSQMTRMLDILMDYCHFRNFNFSRLDGSMSYTEREKNMHSFNT 663
Query: 290 STEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLV 349
+ +FL+STRAGG G+NLTAADT I+YDSDWNPQ D+QA+ RCHRIGQTKPV +YRLV
Sbjct: 664 DPDVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLV 723
Query: 350 SHST 353
+ +T
Sbjct: 724 TANT 727
Score = 131 (51.2 bits), Expect = 1.1e-53, Sum P(2) = 1.1e-53
Identities = 24/49 (48%), Positives = 33/49 (67%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H IL PF LRRLK DV L +PPK+ V+ P+ QE+ YT ++ +TI
Sbjct: 440 LHQILTPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEVFYTAIVNRTI 488
Score = 39 (18.8 bits), Expect = 5.1e-44, Sum P(2) = 5.1e-44
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 80 WFSEESTLSNASSVKAGKREQTI 102
WF S A + A +REQ +
Sbjct: 414 WFDITSLSETAEDIIAKEREQNV 436
>MGI|MGI:106209 [details] [associations]
symbol:Hells "helicase, lymphoid specific" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IDA]
[GO:0001655 "urogenital system development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005721 "centromeric heterochromatin"
evidence=IDA] [GO:0006306 "DNA methylation" evidence=IMP]
[GO:0006342 "chromatin silencing" evidence=IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IMP]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007067
"mitosis" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IMP] [GO:0010216 "maintenance of DNA
methylation" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0030098 "lymphocyte differentiation"
evidence=TAS] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0051301 "cell division" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 MGI:MGI:106209 GO:GO:0005524
GO:GO:0005634 GO:GO:0043066 GO:GO:0051301 GO:GO:0007067
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 HOGENOM:HOG000172362 OMA:ETFYTAI GO:GO:0006346
GO:GO:0030098 GO:GO:0046651 CTD:3070 HOVERGEN:HBG060049
OrthoDB:EOG4SN1N4 EMBL:U25691 EMBL:AF155210 EMBL:AK013266
EMBL:AK147126 EMBL:BC020056 EMBL:BC100394 IPI:IPI00121431
IPI:IPI00808497 PIR:JC4666 RefSeq:NP_032260.2 UniGene:Mm.392920
UniGene:Mm.486446 UniGene:Mm.57223 ProteinModelPortal:Q60848
SMR:Q60848 DIP:DIP-43735N IntAct:Q60848 MINT:MINT-2521001
STRING:Q60848 PhosphoSite:Q60848 PaxDb:Q60848 PRIDE:Q60848
DNASU:15201 Ensembl:ENSMUST00000025965 GeneID:15201 KEGG:mmu:15201
UCSC:uc008hjt.1 GeneTree:ENSGT00550000075106 InParanoid:Q60848
NextBio:287739 Bgee:Q60848 CleanEx:MM_HELLS Genevestigator:Q60848
GermOnline:ENSMUSG00000025001 Uniprot:Q60848
Length = 821
Score = 455 (165.2 bits), Expect = 1.2e-53, Sum P(2) = 1.2e-53
Identities = 90/184 (48%), Positives = 126/184 (68%)
Query: 170 EKNVDEILHHVNVKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIV 229
E N+ I VN+K+ N+ M+LR +HPY+I P V +E DE +V++SGK ++
Sbjct: 530 EGNIP-IESEVNLKLRNIMMLLRKCCNHPYMIEYPIDPVT--QEFKIDEELVTNSGKFLI 586
Query: 230 LNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG 289
L+++L +LK+ HK LVFS M +L+ + + C L N+ + RL GS+ ER + FN
Sbjct: 587 LDRMLPELKKRGHKVLVFSQMTSMLDILMDYCHLRNFIFSRLDGSMSYSEREKNIYSFNT 646
Query: 290 STEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLV 349
+ +FL+STRAGG G+NLTAADT I+YDSDWNPQ D+QA+ RCHRIGQTKPV +YRLV
Sbjct: 647 DPDVFLFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLV 706
Query: 350 SHST 353
+ +T
Sbjct: 707 TANT 710
Score = 132 (51.5 bits), Expect = 1.2e-53, Sum P(2) = 1.2e-53
Identities = 24/49 (48%), Positives = 33/49 (67%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H IL PF LRRLK DV L +PPK+ V+ P+ QE+ YT ++ +TI
Sbjct: 423 LHQILTPFLLRRLKSDVALEVPPKREVVVYAPLCNKQEIFYTAIVNRTI 471
Score = 39 (18.8 bits), Expect = 7.3e-44, Sum P(2) = 7.3e-44
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 80 WFSEESTLSNASSVKAGKREQTI 102
WF S A + A +REQ +
Sbjct: 397 WFDITSLSETAEDIIAKEREQNV 419
>ZFIN|ZDB-GENE-030131-9923 [details] [associations]
symbol:hells "helicase, lymphoid-specific"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045132 "meiotic chromosome segregation"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR011515 Pfam:PF00176 Pfam:PF00271
Pfam:PF07557 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-9923 GO:GO:0005524 GO:GO:0005634 GO:GO:0000775
GO:GO:0003677 GO:GO:0004386 GO:GO:0045132 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 CTD:3070 HOVERGEN:HBG060049
EMBL:AY612850 IPI:IPI00817585 RefSeq:NP_001032178.1
UniGene:Dr.75180 ProteinModelPortal:Q3BDS6 STRING:Q3BDS6
GeneID:553328 KEGG:dre:553328 InParanoid:Q3BDS6 NextBio:20880094
ArrayExpress:Q3BDS6 Uniprot:Q3BDS6
Length = 853
Score = 445 (161.7 bits), Expect = 4.2e-52, Sum P(2) = 4.2e-52
Identities = 93/217 (42%), Positives = 136/217 (62%)
Query: 138 DDTSDTEVQVEDKIKVEPCENSSNAQDVPSAEE-KNVDEILHHVNVKMTNVTMVLRNIIS 196
D D E +E KV+ E S A P VD VN+K+ N+ M+L+ +
Sbjct: 536 DSMKDLEKYLE---KVQQ-ELDSQASSTPVVNVFMPVDA---QVNLKLQNILMLLKRCCN 588
Query: 197 HPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNF 256
H YLI P G + DE +V +SGK ++L+++L +LK+ HK L+FS M +L+
Sbjct: 589 HAYLIEYPLDPTTG--DFKIDEQLVEASGKFLILDRMLPELKKRGHKVLIFSQMTSILDI 646
Query: 257 IEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCI 316
+ + C L Y Y RL GS+ +R++ +++F+ E +FLLSTRAGG G+NLT+ADT I
Sbjct: 647 LMDYCYLRGYEYSRLDGSMSYADRDENMKKFSSDPEVFLFLLSTRAGGLGINLTSADTVI 706
Query: 317 LYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHST 353
++DSDWNPQ D+QA+ RCHRIGQTKPV ++RL++ +T
Sbjct: 707 IFDSDWNPQADLQAQDRCHRIGQTKPVVVHRLITANT 743
Score = 129 (50.5 bits), Expect = 4.2e-52, Sum P(2) = 4.2e-52
Identities = 25/51 (49%), Positives = 32/51 (62%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTIGE 51
+H IL PF LRRLK DV L +PPKK V+ P+ QE Y ++ KTI +
Sbjct: 450 LHLILTPFLLRRLKSDVTLEVPPKKEIVVYAPLTNKQEAFYMAIVNKTIAK 500
Score = 48 (22.0 bits), Expect = 1.4e-43, Sum P(2) = 1.4e-43
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 80 WFSEESTLSNASSVKAGKREQTI 102
WF + S+A ++ A +REQ I
Sbjct: 424 WFDISTITSDAENIVANEREQNI 446
>UNIPROTKB|I3LTT5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 EMBL:CU695129
Ensembl:ENSSSCT00000027860 Uniprot:I3LTT5
Length = 778
Score = 417 (151.9 bits), Expect = 1.0e-47, Sum P(2) = 1.0e-47
Identities = 82/176 (46%), Positives = 120/176 (68%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTN 241
+++ N+ M LR +HPYL + + DE+IVS+SGKM+VL++LL KLK+
Sbjct: 450 MRLLNILMQLRKCCNHPYLFDG----AEPGPPYTTDEHIVSNSGKMVVLDKLLAKLKEQG 505
Query: 242 HKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLS 299
+ L+FS M ++L+ +E+ C+ Y Y RL G +EER +A++ FN S+ + +F+LS
Sbjct: 506 SRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAIEAFNVPNSSRF-IFMLS 564
Query: 300 TRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
TRAGG G+NL +AD ILYDSDWNPQVD+QA R HRIGQ KPV ++RL++ +T +
Sbjct: 565 TRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVE 620
Score = 114 (45.2 bits), Expect = 1.0e-47, Sum P(2) = 1.0e-47
Identities = 24/49 (48%), Positives = 30/49 (61%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +LKPF LRR+K DV +LPPKK I + Q YTK+L K I
Sbjct: 390 LHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDI 438
>UNIPROTKB|K7GNV1 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360492.1 Ensembl:ENSSSCT00000032734
Uniprot:K7GNV1
Length = 1061
Score = 417 (151.9 bits), Expect = 5.5e-47, Sum P(2) = 5.5e-47
Identities = 82/176 (46%), Positives = 120/176 (68%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTN 241
+++ N+ M LR +HPYL + + DE+IVS+SGKM+VL++LL KLK+
Sbjct: 450 MRLLNILMQLRKCCNHPYLFDG----AEPGPPYTTDEHIVSNSGKMVVLDKLLAKLKEQG 505
Query: 242 HKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLS 299
+ L+FS M ++L+ +E+ C+ Y Y RL G +EER +A++ FN S+ + +F+LS
Sbjct: 506 SRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAIEAFNVPNSSRF-IFMLS 564
Query: 300 TRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
TRAGG G+NL +AD ILYDSDWNPQVD+QA R HRIGQ KPV ++RL++ +T +
Sbjct: 565 TRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVE 620
Score = 114 (45.2 bits), Expect = 5.5e-47, Sum P(2) = 5.5e-47
Identities = 24/49 (48%), Positives = 30/49 (61%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +LKPF LRR+K DV +LPPKK I + Q YTK+L K I
Sbjct: 390 LHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDI 438
>RGD|2323132 [details] [associations]
symbol:LOC100359912 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin a5-like" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:2323132 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00390811
Ensembl:ENSRNOT00000031851 Uniprot:F1M7H3
Length = 760
Score = 406 (148.0 bits), Expect = 3.7e-46, Sum P(2) = 3.7e-46
Identities = 80/176 (45%), Positives = 118/176 (67%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTN 241
+++ N+ M LR +HPYL + + D ++V++SGKM+VL++LL KLK+
Sbjct: 165 MRLLNILMQLRKCCNHPYLFDG----AEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQG 220
Query: 242 HKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLS 299
+ L+FS M +VL+ +E+ C+ NY Y RL G ++ER D++ +N ST++ VF+LS
Sbjct: 221 SRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKF-VFMLS 279
Query: 300 TRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
TRAGG G+NL AD ILYDSDWNPQVD+QA R HRIGQTK V ++R ++ +T +
Sbjct: 280 TRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVE 335
Score = 110 (43.8 bits), Expect = 3.7e-46, Sum P(2) = 3.7e-46
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +L+PF LRR+K DV +LPPKK I + Q YT++L K I
Sbjct: 105 LHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDI 153
Score = 53 (23.7 bits), Expect = 0.00080, Sum P(2) = 0.00080
Identities = 25/114 (21%), Positives = 51/114 (44%)
Query: 143 TEVQVEDKIKVEPCENSSNAQDVPSAEEKNVDEILHHVNVKMTNVTMVLRNIISHPYLIN 202
T+ VE++I VE E + + + VD+ L+ + + ++R+ +H + +
Sbjct: 330 TDNTVEERI-VERAEMKLRLDSIVIQQGRLVDQNLNKIG--KDEMLQMIRHGATHVFA-S 385
Query: 203 KPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNF 256
K I D E + D + + K +N+ L K+ +++ + T V NF
Sbjct: 386 KESEITD---EDI-DGILERGAKKTAEMNEKLSKMGESSLRNFTMDTESSVYNF 435
>MGI|MGI:1935127 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000733 "DNA strand renaturation" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0007420 "brain
development" evidence=ISO;IMP] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016589 "NURF complex" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=ISO] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=ISO]
[GO:0090537 "CERF complex" evidence=ISO] [GO:2000177 "regulation of
neural precursor cell proliferation" evidence=IGI;IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 MGI:MGI:1935127 GO:GO:0005524 GO:GO:0005634
GO:GO:0045893 GO:GO:0007420 GO:GO:0030182 GO:GO:0003677
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016589 GO:GO:0036310 GO:GO:0008094
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 SUPFAM:SSF101224
CTD:6594 HOVERGEN:HBG056329 KO:K11727 EMBL:AF325920 EMBL:AK030741
EMBL:AL671903 EMBL:BC057115 IPI:IPI00314654 IPI:IPI00761324
RefSeq:NP_444353.3 UniGene:Mm.229151 HSSP:Q24368
ProteinModelPortal:Q6PGB8 SMR:Q6PGB8 STRING:Q6PGB8
PhosphoSite:Q6PGB8 PaxDb:Q6PGB8 PRIDE:Q6PGB8
Ensembl:ENSMUST00000077569 Ensembl:ENSMUST00000088973
Ensembl:ENSMUST00000101616 GeneID:93761 KEGG:mmu:93761
UCSC:uc009tbl.2 UCSC:uc009tbm.2 InParanoid:B1AUP6 OrthoDB:EOG44J2H9
NextBio:351647 Bgee:Q6PGB8 Genevestigator:Q6PGB8
GermOnline:ENSMUSG00000031099 Uniprot:Q6PGB8
Length = 1046
Score = 403 (146.9 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
Identities = 78/176 (44%), Positives = 118/176 (67%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTN 241
+++ N+ M LR +HPYL + + DE+IV +SGKM+ L++LL ++K+
Sbjct: 451 MRLLNILMQLRKCCNHPYLFDG----AEPGPPYTTDEHIVGNSGKMVALDKLLARIKEQG 506
Query: 242 HKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG--STEWGVFLLS 299
+ L+FS M ++L+ +E+ C+ Y Y RL G +EER +A+ FN S+++ +F+LS
Sbjct: 507 SRVLIFSQMTRLLDILEDYCMWRGYEYSRLDGQTPHEEREEAIDAFNAPNSSKF-IFMLS 565
Query: 300 TRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
TRAGG G+NL +AD ILYDSDWNPQVD+QA R HRIGQ KPV ++RL++ +T +
Sbjct: 566 TRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVE 621
Score = 114 (45.2 bits), Expect = 1.6e-45, Sum P(2) = 1.6e-45
Identities = 24/49 (48%), Positives = 30/49 (61%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +LKPF LRR+K DV +LPPKK I + Q YTK+L K I
Sbjct: 391 LHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDI 439
>UNIPROTKB|E2QVR5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224
Ensembl:ENSCAFT00000029649 Uniprot:E2QVR5
Length = 1073
Score = 407 (148.3 bits), Expect = 1.8e-45, Sum P(2) = 1.8e-45
Identities = 82/178 (46%), Positives = 121/178 (67%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTN 241
+++ N+ M LR +HPYL + + DE+IVS+SGKM+VL++LL KLK+
Sbjct: 460 MRLLNILMQLRKCCNHPYLFDG----AEPGPPYTTDEHIVSNSGKMVVLDKLLAKLKEQG 515
Query: 242 HKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERN--DAVQQFNG--STEWGVFL 297
+ L+FS M ++L+ +E+ C+ Y Y RL G +EER +A++ FN S+++ +F+
Sbjct: 516 SRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREKKEAIEAFNAPNSSKF-IFM 574
Query: 298 LSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
LSTRAGG G+NL +AD ILYDSDWNPQVD+QA R HRIGQ KPV ++RL++ +T +
Sbjct: 575 LSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVE 632
Score = 110 (43.8 bits), Expect = 1.8e-45, Sum P(2) = 1.8e-45
Identities = 24/50 (48%), Positives = 31/50 (62%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQ-ELMYTKVLTKTI 49
+H +LKPF LRR+K DV +LPPKK + + Q E YTK+L K I
Sbjct: 399 LHAVLKPFLLRRIKTDVEKSLPPKKEIKVYLGLSKMQREWWYTKILMKDI 448
>MGI|MGI:1935129 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IDA] [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=ISO] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005677 "chromatin silencing complex" evidence=IDA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006302 "double-strand
break repair" evidence=IMP] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA] [GO:0006334 "nucleosome assembly"
evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISO;IGI;IDA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=ISO] [GO:0009790 "embryo development"
evidence=IMP] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=ISO] [GO:0016589
"NURF complex" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0031213 "RSF complex" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;TAS] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 SMART:SM00717
MGI:MGI:1935129 GO:GO:0005524 GO:GO:0045893 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0009790 GO:GO:0043596
GO:GO:0006333 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183
GO:GO:0006302 GO:GO:0004386 GO:GO:0000793 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213
HOVERGEN:HBG056329 OrthoDB:EOG44J2H9 CTD:8467 EMBL:AF375046
EMBL:AF325921 EMBL:BC021922 EMBL:BC053069 EMBL:AK039811
EMBL:AK052320 IPI:IPI00396739 RefSeq:NP_444354.2 UniGene:Mm.246803
ProteinModelPortal:Q91ZW3 SMR:Q91ZW3 DIP:DIP-36073N IntAct:Q91ZW3
MINT:MINT-1867515 STRING:Q91ZW3 PhosphoSite:Q91ZW3 PaxDb:Q91ZW3
PRIDE:Q91ZW3 Ensembl:ENSMUST00000043359 GeneID:93762 KEGG:mmu:93762
UCSC:uc009mja.1 InParanoid:Q91ZW3 NextBio:351651 Bgee:Q91ZW3
Genevestigator:Q91ZW3 GermOnline:ENSMUSG00000031715 Uniprot:Q91ZW3
Length = 1051
Score = 406 (148.0 bits), Expect = 2.1e-45, Sum P(2) = 2.1e-45
Identities = 80/176 (45%), Positives = 118/176 (67%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTN 241
+++ N+ M LR +HPYL + + D ++V++SGKM+VL++LL KLK+
Sbjct: 443 MRLLNILMQLRKCCNHPYLFDG----AEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQG 498
Query: 242 HKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLS 299
+ L+FS M +VL+ +E+ C+ NY Y RL G ++ER D++ +N ST++ VF+LS
Sbjct: 499 SRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKF-VFMLS 557
Query: 300 TRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
TRAGG G+NL AD ILYDSDWNPQVD+QA R HRIGQTK V ++R ++ +T +
Sbjct: 558 TRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVE 613
Score = 110 (43.8 bits), Expect = 2.1e-45, Sum P(2) = 2.1e-45
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +L+PF LRR+K DV +LPPKK I + Q YT++L K I
Sbjct: 383 LHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDI 431
>RGD|1308832 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10116 "Rattus norvegicus" [GO:0000183 "chromatin silencing
at rDNA" evidence=ISO] [GO:0000793 "condensed chromosome"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005677 "chromatin silencing complex" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006333 "chromatin assembly or disassembly"
evidence=ISO] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISO] [GO:0009790
"embryo development" evidence=ISO] [GO:0016584 "nucleosome
positioning" evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0031213 "RSF
complex" evidence=ISO] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0043596 "nuclear
replication fork" evidence=ISO] [GO:0042393 "histone binding"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1308832 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
IPI:IPI00359419 PRIDE:F1LNL2 Ensembl:ENSRNOT00000024568
UCSC:RGD:1308832 ArrayExpress:F1LNL2 Uniprot:F1LNL2
Length = 1051
Score = 406 (148.0 bits), Expect = 2.1e-45, Sum P(2) = 2.1e-45
Identities = 80/176 (45%), Positives = 118/176 (67%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTN 241
+++ N+ M LR +HPYL + + D ++V++SGKM+VL++LL KLK+
Sbjct: 443 MRLLNILMQLRKCCNHPYLFDG----AEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQG 498
Query: 242 HKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLS 299
+ L+FS M +VL+ +E+ C+ NY Y RL G ++ER D++ +N ST++ VF+LS
Sbjct: 499 SRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKF-VFMLS 557
Query: 300 TRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
TRAGG G+NL AD ILYDSDWNPQVD+QA R HRIGQTK V ++R ++ +T +
Sbjct: 558 TRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVE 613
Score = 110 (43.8 bits), Expect = 2.1e-45, Sum P(2) = 2.1e-45
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +L+PF LRR+K DV +LPPKK I + Q YT++L K I
Sbjct: 383 LHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDI 431
>UNIPROTKB|O60264 [details] [associations]
symbol:SMARCA5 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A member 5"
species:9606 "Homo sapiens" [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000183 "chromatin silencing at rDNA" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IDA;TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IDA]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0031213 "RSF
complex" evidence=IPI] [GO:0042393 "histone binding" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IDA] [GO:0000793 "condensed
chromosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016589 "NURF complex" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0034080
"CENP-A containing nucleosome assembly at centromere" evidence=TAS]
[GO:0043596 "nuclear replication fork" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0006352 GO:GO:0006357 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
GO:GO:0034080 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016584 GO:GO:0005677
GO:GO:0016589 HOGENOM:HOG000192862 KO:K11654 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 HOVERGEN:HBG056329 OrthoDB:EOG44J2H9
EMBL:AB010882 EMBL:BC023144 IPI:IPI00297211 RefSeq:NP_003592.3
UniGene:Hs.558422 ProteinModelPortal:O60264 SMR:O60264
IntAct:O60264 MINT:MINT-2981772 STRING:O60264 PhosphoSite:O60264
PaxDb:O60264 PeptideAtlas:O60264 PRIDE:O60264 DNASU:8467
Ensembl:ENST00000283131 GeneID:8467 KEGG:hsa:8467 UCSC:uc003ijg.3
CTD:8467 GeneCards:GC04P144434 HGNC:HGNC:11101 HPA:CAB005227
HPA:HPA008751 MIM:603375 neXtProt:NX_O60264 PharmGKB:PA35951
InParanoid:O60264 PhylomeDB:O60264 GenomeRNAi:8467 NextBio:31688
ArrayExpress:O60264 Bgee:O60264 CleanEx:HS_SMARCA5
Genevestigator:O60264 GermOnline:ENSG00000153147 Uniprot:O60264
Length = 1052
Score = 406 (148.0 bits), Expect = 2.1e-45, Sum P(2) = 2.1e-45
Identities = 80/176 (45%), Positives = 118/176 (67%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTN 241
+++ N+ M LR +HPYL + + D ++V++SGKM+VL++LL KLK+
Sbjct: 444 MRLLNILMQLRKCCNHPYLFDG----AEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQG 499
Query: 242 HKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLS 299
+ L+FS M +VL+ +E+ C+ NY Y RL G ++ER D++ +N ST++ VF+LS
Sbjct: 500 SRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKF-VFMLS 558
Query: 300 TRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
TRAGG G+NL AD ILYDSDWNPQVD+QA R HRIGQTK V ++R ++ +T +
Sbjct: 559 TRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVE 614
Score = 110 (43.8 bits), Expect = 2.1e-45, Sum P(2) = 2.1e-45
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +L+PF LRR+K DV +LPPKK I + Q YT++L K I
Sbjct: 384 LHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDI 432
>UNIPROTKB|H0YJG4 [details] [associations]
symbol:CHD8 "Chromodomain-helicase-DNA-binding protein 8"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL135744 EMBL:AL161747
HGNC:HGNC:20153 Ensembl:ENST00000555935 Uniprot:H0YJG4
Length = 873
Score = 411 (149.7 bits), Expect = 4.6e-45, Sum P(2) = 4.6e-45
Identities = 85/192 (44%), Positives = 126/192 (65%)
Query: 179 HVNV-KMTNVTMVLRNIISHPYLIN-KPYRIVDGKKEMVCD--------ENIVSSSGKMI 228
H N+ + N M LR +HPYLIN +I+ +E C + +V S+GK++
Sbjct: 304 HTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFRE-ACHIIPHDFHLQAMVRSAGKLV 362
Query: 229 VLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN 288
++++LL KLK HK L+FS MV+ L+ +E+ + Y Y R+ G +R R A+ +F+
Sbjct: 363 LIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFS 422
Query: 289 G-STEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYR 347
++ VFLL TRAGG G+NLTAADTCI++DSDWNPQ D+QA+ARCHRIGQ+K V +YR
Sbjct: 423 KPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYR 482
Query: 348 LVSHSTYQVHLF 359
L++ ++Y+ +F
Sbjct: 483 LITRNSYEREMF 494
Score = 98 (39.6 bits), Expect = 4.6e-45, Sum P(2) = 4.6e-45
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 4 ILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
ILKP LRRLK DV NL PK+ T+I+ + Q+ Y +L K
Sbjct: 250 ILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEK 293
>UNIPROTKB|F1N052 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 EMBL:DAAA02044371 IPI:IPI00868566 UniGene:Bt.103096
Ensembl:ENSBTAT00000004408 Uniprot:F1N052
Length = 1052
Score = 402 (146.6 bits), Expect = 5.7e-45, Sum P(2) = 5.7e-45
Identities = 79/176 (44%), Positives = 118/176 (67%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTN 241
+++ N+ M LR +HPYL + + D ++V++SGKM+VL++LL KLK+
Sbjct: 444 MRLLNILMQLRKCCNHPYLFDG----AEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQG 499
Query: 242 HKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLS 299
+ L+FS M +VL+ +E+ C+ NY Y RL G ++ER +++ +N ST++ VF+LS
Sbjct: 500 SRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQESINAYNEPNSTKF-VFMLS 558
Query: 300 TRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
TRAGG G+NL AD ILYDSDWNPQVD+QA R HRIGQTK V ++R ++ +T +
Sbjct: 559 TRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVE 614
Score = 110 (43.8 bits), Expect = 5.7e-45, Sum P(2) = 5.7e-45
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +L+PF LRR+K DV +LPPKK I + Q YT++L K I
Sbjct: 384 LHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDI 432
>UNIPROTKB|E2QWV0 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043596 "nuclear replication fork"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0042393 "histone binding" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=IEA] [GO:0009790
"embryo development" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006334 "nucleosome
assembly" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302 GO:GO:0004386
GO:GO:0000793 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0005677 GO:GO:0016589 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213 CTD:8467
EMBL:AAEX03010002 RefSeq:XP_532676.1 ProteinModelPortal:E2QWV0
Ensembl:ENSCAFT00000012062 GeneID:475451 KEGG:cfa:475451
NextBio:20851293 Uniprot:E2QWV0
Length = 1052
Score = 402 (146.6 bits), Expect = 5.7e-45, Sum P(2) = 5.7e-45
Identities = 79/176 (44%), Positives = 118/176 (67%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTN 241
+++ N+ M LR +HPYL + + D ++V++SGKM+VL++LL KLK+
Sbjct: 444 MRLLNILMQLRKCCNHPYLFDG----AEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQG 499
Query: 242 HKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLS 299
+ L+FS M +VL+ +E+ C+ NY Y RL G ++ER +++ +N ST++ VF+LS
Sbjct: 500 SRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQESINAYNEPNSTKF-VFMLS 558
Query: 300 TRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
TRAGG G+NL AD ILYDSDWNPQVD+QA R HRIGQTK V ++R ++ +T +
Sbjct: 559 TRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVE 614
Score = 110 (43.8 bits), Expect = 5.7e-45, Sum P(2) = 5.7e-45
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +L+PF LRR+K DV +LPPKK I + Q YT++L K I
Sbjct: 384 LHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDI 432
>UNIPROTKB|F1RRG9 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 CTD:8467 EMBL:CU463195 RefSeq:XP_003129222.2
UniGene:Ssc.97261 Ensembl:ENSSSCT00000009907 GeneID:100188903
KEGG:ssc:100188903 ArrayExpress:F1RRG9 Uniprot:F1RRG9
Length = 1052
Score = 402 (146.6 bits), Expect = 5.7e-45, Sum P(2) = 5.7e-45
Identities = 79/176 (44%), Positives = 118/176 (67%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTN 241
+++ N+ M LR +HPYL + + D ++V++SGKM+VL++LL KLK+
Sbjct: 444 MRLLNILMQLRKCCNHPYLFDG----AEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQG 499
Query: 242 HKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLS 299
+ L+FS M +VL+ +E+ C+ NY Y RL G ++ER +++ +N ST++ VF+LS
Sbjct: 500 SRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQESINAYNEPNSTKF-VFMLS 558
Query: 300 TRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
TRAGG G+NL AD ILYDSDWNPQVD+QA R HRIGQTK V ++R ++ +T +
Sbjct: 559 TRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVE 614
Score = 110 (43.8 bits), Expect = 5.7e-45, Sum P(2) = 5.7e-45
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +L+PF LRR+K DV +LPPKK I + Q YT++L K I
Sbjct: 384 LHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDI 432
>UNIPROTKB|E1C0M8 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0000793 "condensed
chromosome" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005677 "chromatin
silencing complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0016589 "NURF complex"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0042393 "histone
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0043596 "nuclear replication fork"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0043596 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 EMBL:AADN02016239 EMBL:AADN02016240
IPI:IPI00577188 Ensembl:ENSGALT00000016121 ArrayExpress:E1C0M8
Uniprot:E1C0M8
Length = 1038
Score = 400 (145.9 bits), Expect = 8.8e-45, Sum P(2) = 8.8e-45
Identities = 79/176 (44%), Positives = 118/176 (67%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTN 241
+++ N+ M LR +HPYL + + D ++V++SGKM+VL++LL KLK+
Sbjct: 429 MRLLNILMQLRKCCNHPYLFDG----AEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQG 484
Query: 242 HKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLS 299
+ L+FS M +VL+ +E+ C+ NY Y RL G ++ER ++ +N GS+++ VF+LS
Sbjct: 485 SRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQASINAYNEPGSSKF-VFMLS 543
Query: 300 TRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
TRAGG G+NL AD ILYDSDWNPQVD+QA R HRIGQTK V ++R ++ +T +
Sbjct: 544 TRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVE 599
Score = 110 (43.8 bits), Expect = 8.8e-45, Sum P(2) = 8.8e-45
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +L+PF LRR+K DV +LPPKK I + Q YT++L K I
Sbjct: 369 LHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDI 417
>DICTYBASE|DDB_G0293012 [details] [associations]
symbol:DDB_G0293012 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR000626
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00213 SMART:SM00298
SMART:SM00490 dictyBase:DDB_G0293012 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006357 GO:GO:0004003
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
EMBL:AAFI02000199 InterPro:IPR022617 Pfam:PF11976
RefSeq:XP_629261.1 ProteinModelPortal:Q54CF8
EnsemblProtists:DDB0220643 GeneID:8628981 KEGG:ddi:DDB_G0293012
InParanoid:Q54CF8 OMA:IMINEDI Uniprot:Q54CF8
Length = 3071
Score = 425 (154.7 bits), Expect = 1.2e-44, Sum P(2) = 1.2e-44
Identities = 83/183 (45%), Positives = 126/183 (68%)
Query: 183 KMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENI----VSSSGKMIVLNQLLHKLK 238
K++N+ + +R + +HP+LI + ++++ DE + V SS K++++++LL +LK
Sbjct: 1164 KLSNIMIQIRKVCNHPFLIPGAEESIVKQEKIAGDEELGELLVKSSSKLVLVDKLLQRLK 1223
Query: 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVF 296
H+ L+FS MV+ LN +E+ Y Y RL GSI++E R ++ +F G+ + VF
Sbjct: 1224 AEGHQVLIFSQMVESLNILEDYLQYREYTYERLDGSIKSEVRQASIDRFQDKGANRF-VF 1282
Query: 297 LLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQV 356
LLSTRAGG G+NLT ADT IL+DSDWNPQ D+QA+ARCHRIGQT V +YRL++ +TY+
Sbjct: 1283 LLSTRAGGVGINLTTADTVILFDSDWNPQSDLQAQARCHRIGQTNNVKVYRLITRNTYEE 1342
Query: 357 HLF 359
+LF
Sbjct: 1343 YLF 1345
Score = 97 (39.2 bits), Expect = 1.2e-44, Sum P(2) = 1.2e-44
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTIGENRE 54
+H +L P+ LRR+K DV L++P K+ TVI + Q+ Y +L + NRE
Sbjct: 1101 LHQLLSPYLLRRMKEDVELSIPIKEETVIQVELSSTQKTYYRAILER----NRE 1150
Score = 56 (24.8 bits), Expect = 2.4e-40, Sum P(2) = 2.4e-40
Identities = 25/113 (22%), Positives = 47/113 (41%)
Query: 83 EESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSD 142
+E TL ++ K+ D L Q P + K + E + D E ++ +
Sbjct: 164 DEYTLESSDDDDTSKKSNN-DEKPLPQPPVNKNKPNKKLKNDNEGENEEDEEEEEEEEEE 222
Query: 143 TEVQVEDK-IKVEPCENSSNAQDVPSAEEKNVDEILHHVNV--KMTNVTMVLR 192
E + E++ I +E + + D S + + DE + +V K N TM ++
Sbjct: 223 EEEEEEEEDIYIENVRDVIKSDDDQSFGDSSADEKKPNNSVAKKAPNNTMTIK 275
Score = 52 (23.4 bits), Expect = 6.4e-40, Sum P(2) = 6.4e-40
Identities = 27/132 (20%), Positives = 50/132 (37%)
Query: 88 SNASSVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEID-----RMFDSMIERDDTSD 142
++ ++ K K + I S+ +K L T + + S E DD D
Sbjct: 424 ASPTTTKLDKSKSNISSSSSSSNSNNKKKQLGVTKSRVPLKGKGKIKNSSSEDEDDDDDD 483
Query: 143 TEVQVEDKIKVEPCENSSNAQDVPSAEEKNVDEILHHVNVKMTN-----VTMVLRNIISH 197
++ Q D+ ENSS Q + D+ L + + + + V VL +
Sbjct: 484 SDEQNFDESDDFASENSSEEQASDDEYYMSEDDPLDQIEIPIADDDELRVQKVLTQRLFK 543
Query: 198 PYLINKPYRIVD 209
++ PY ++D
Sbjct: 544 KKFLSLPYSLLD 555
>UNIPROTKB|F1P3Q4 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0007420 "brain development" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0016589 "NURF
complex" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0008094 GeneTree:ENSGT00680000100002
SUPFAM:SSF101224 OMA:PMSQKRK EMBL:AADN02013587 EMBL:AADN02013588
IPI:IPI00594974 Ensembl:ENSGALT00000013737 Uniprot:F1P3Q4
Length = 982
Score = 397 (144.8 bits), Expect = 1.9e-44, Sum P(2) = 1.9e-44
Identities = 77/176 (43%), Positives = 118/176 (67%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTN 241
+++ N+ M LR +HPYL + + D +++++SGKM+VL++LL KL++
Sbjct: 371 MRLLNILMQLRKCCNHPYLFDG----AEPGPPYTTDTHLITNSGKMLVLDKLLAKLREQG 426
Query: 242 HKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG--STEWGVFLLS 299
+ L+FS M ++L+ +E+ C+ Y Y RL G +EER +A+ FN S+++ +F+LS
Sbjct: 427 SRVLLFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAIDTFNAPNSSKF-IFMLS 485
Query: 300 TRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
TRAGG G+NL AD ILYDSDWNPQVD+QA R HRIGQ KPV ++RL++ +T +
Sbjct: 486 TRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVE 541
Score = 109 (43.4 bits), Expect = 1.9e-44, Sum P(2) = 1.9e-44
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +LKPF LRR+K +V +LPPKK I + Q YT++L K I
Sbjct: 311 LHAVLKPFLLRRIKAEVEKSLPPKKEVKIYLGLSKMQREWYTRILMKDI 359
>UNIPROTKB|F6TQG2 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:AL022577 HGNC:HGNC:11097 IPI:IPI00647510
ProteinModelPortal:F6TQG2 SMR:F6TQG2 PRIDE:F6TQG2
Ensembl:ENST00000450039 ArrayExpress:F6TQG2 Bgee:F6TQG2
Uniprot:F6TQG2
Length = 1005
Score = 391 (142.7 bits), Expect = 2.7e-44, Sum P(2) = 2.7e-44
Identities = 83/188 (44%), Positives = 121/188 (64%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTN 241
+++ N+ M LR +HPYL + + DE+IVS+SGKM+VL++LL KLK+
Sbjct: 426 MRLLNILMQLRKCCNHPYLFDG----AEPGPPYTTDEHIVSNSGKMVVLDKLLAKLKEQG 481
Query: 242 HKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERND------------AVQQFNG 289
+ L+FS M ++L+ +E+ C+ Y Y RL G +EER D A++ FN
Sbjct: 482 SRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAFNA 541
Query: 290 --STEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYR 347
S+++ +F+LSTRAGG G+NL +AD ILYDSDWNPQVD+QA R HRIGQ KPV ++R
Sbjct: 542 PNSSKF-IFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFR 600
Query: 348 LVSHSTYQ 355
L++ +T +
Sbjct: 601 LITDNTVE 608
Score = 114 (45.2 bits), Expect = 2.7e-44, Sum P(2) = 2.7e-44
Identities = 24/49 (48%), Positives = 30/49 (61%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +LKPF LRR+K DV +LPPKK I + Q YTK+L K I
Sbjct: 366 LHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDI 414
>UNIPROTKB|P28370 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016589 "NURF complex" evidence=IDA]
[GO:0036310 "annealing helicase activity" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IDA] [GO:0070615
"nucleosome-dependent ATPase activity" evidence=IDA] [GO:0090537
"CERF complex" evidence=IDA] [GO:0030182 "neuron differentiation"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0007420 "brain development" evidence=IMP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0006351 "transcription, DNA-dependent"
evidence=IMP] [GO:0000733 "DNA strand renaturation" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0036310 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:M88163 EMBL:M89907 EMBL:AL022577 EMBL:BC117447
IPI:IPI00216046 IPI:IPI00646130 PIR:S35457 PIR:S35458
RefSeq:NP_003060.2 RefSeq:NP_620604.2 UniGene:Hs.152292
ProteinModelPortal:P28370 SMR:P28370 IntAct:P28370
MINT:MINT-2802155 STRING:P28370 PhosphoSite:P28370 DMDM:115311627
PaxDb:P28370 PRIDE:P28370 Ensembl:ENST00000371121
Ensembl:ENST00000371122 Ensembl:ENST00000371123 GeneID:6594
KEGG:hsa:6594 UCSC:uc004eun.4 UCSC:uc004eup.4 CTD:6594
GeneCards:GC0XM128580 HGNC:HGNC:11097 HPA:HPA003335 MIM:300012
neXtProt:NX_P28370 PharmGKB:PA35947 HOVERGEN:HBG056329
InParanoid:P28370 KO:K11727 OMA:PMSQKRK PhylomeDB:P28370
GenomeRNAi:6594 NextBio:25645 ArrayExpress:P28370 Bgee:P28370
CleanEx:HS_SMARCA1 Genevestigator:P28370 GermOnline:ENSG00000102038
Uniprot:P28370
Length = 1054
Score = 391 (142.7 bits), Expect = 3.3e-44, Sum P(2) = 3.3e-44
Identities = 83/188 (44%), Positives = 121/188 (64%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTN 241
+++ N+ M LR +HPYL + + DE+IVS+SGKM+VL++LL KLK+
Sbjct: 447 MRLLNILMQLRKCCNHPYLFDG----AEPGPPYTTDEHIVSNSGKMVVLDKLLAKLKEQG 502
Query: 242 HKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERND------------AVQQFNG 289
+ L+FS M ++L+ +E+ C+ Y Y RL G +EER D A++ FN
Sbjct: 503 SRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIEAFNA 562
Query: 290 --STEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYR 347
S+++ +F+LSTRAGG G+NL +AD ILYDSDWNPQVD+QA R HRIGQ KPV ++R
Sbjct: 563 PNSSKF-IFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFR 621
Query: 348 LVSHSTYQ 355
L++ +T +
Sbjct: 622 LITDNTVE 629
Score = 114 (45.2 bits), Expect = 3.3e-44, Sum P(2) = 3.3e-44
Identities = 24/49 (48%), Positives = 30/49 (61%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +LKPF LRR+K DV +LPPKK I + Q YTK+L K I
Sbjct: 387 LHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDI 435
>UNIPROTKB|K7GMM0 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360491.1 Ensembl:ENSSSCT00000034062
Uniprot:K7GMM0
Length = 1057
Score = 390 (142.3 bits), Expect = 4.3e-44, Sum P(2) = 4.3e-44
Identities = 83/188 (44%), Positives = 120/188 (63%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTN 241
+++ N+ M LR +HPYL + + DE+IVS+SGKM+VL++LL KLK+
Sbjct: 450 MRLLNILMQLRKCCNHPYLFDG----AEPGPPYTTDEHIVSNSGKMVVLDKLLAKLKEQG 505
Query: 242 HKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERND------------AVQQFN- 288
+ L+FS M ++L+ +E+ C+ Y Y RL G +EER D A++ FN
Sbjct: 506 SRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVELLGQREAIEAFNV 565
Query: 289 -GSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYR 347
S+ + +F+LSTRAGG G+NL +AD ILYDSDWNPQVD+QA R HRIGQ KPV ++R
Sbjct: 566 PNSSRF-IFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFR 624
Query: 348 LVSHSTYQ 355
L++ +T +
Sbjct: 625 LITDNTVE 632
Score = 114 (45.2 bits), Expect = 4.3e-44, Sum P(2) = 4.3e-44
Identities = 24/49 (48%), Positives = 30/49 (61%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +LKPF LRR+K DV +LPPKK I + Q YTK+L K I
Sbjct: 390 LHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDI 438
>UNIPROTKB|K7GLQ2 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
RefSeq:XP_003135410.1 Ensembl:ENSSSCT00000033549 GeneID:100188905
Uniprot:K7GLQ2
Length = 1073
Score = 390 (142.3 bits), Expect = 4.5e-44, Sum P(2) = 4.5e-44
Identities = 83/188 (44%), Positives = 120/188 (63%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTN 241
+++ N+ M LR +HPYL + + DE+IVS+SGKM+VL++LL KLK+
Sbjct: 450 MRLLNILMQLRKCCNHPYLFDG----AEPGPPYTTDEHIVSNSGKMVVLDKLLAKLKEQG 505
Query: 242 HKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERND------------AVQQFN- 288
+ L+FS M ++L+ +E+ C+ Y Y RL G +EER D A++ FN
Sbjct: 506 SRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVELLGQREAIEAFNV 565
Query: 289 -GSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYR 347
S+ + +F+LSTRAGG G+NL +AD ILYDSDWNPQVD+QA R HRIGQ KPV ++R
Sbjct: 566 PNSSRF-IFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFR 624
Query: 348 LVSHSTYQ 355
L++ +T +
Sbjct: 625 LITDNTVE 632
Score = 114 (45.2 bits), Expect = 4.5e-44, Sum P(2) = 4.5e-44
Identities = 24/49 (48%), Positives = 30/49 (61%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +LKPF LRR+K DV +LPPKK I + Q YTK+L K I
Sbjct: 390 LHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDI 438
>UNIPROTKB|E1BS47 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0003682 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AADN02022009 EMBL:AADN02022010
IPI:IPI00598234 Ensembl:ENSGALT00000005903 ArrayExpress:E1BS47
Uniprot:E1BS47
Length = 1326
Score = 406 (148.0 bits), Expect = 9.1e-44, Sum P(2) = 9.1e-44
Identities = 84/189 (44%), Positives = 126/189 (66%)
Query: 181 NV-KMTNVTMVLRNIISHPYLIN-KPYRIVDGKKEMV-CD------ENIVSSSGKMIVLN 231
NV + N M LR +HPYLIN +I++ KE D + ++ ++GK+++++
Sbjct: 423 NVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNADSPDFQLQAMIQAAGKLVLID 482
Query: 232 QLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-S 290
+LL KLK H+ L+FS MV+ L+ +E+ + Y Y R+ G +R R A+ +F+
Sbjct: 483 KLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSRPD 542
Query: 291 TEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVS 350
++ VFLL TRAGG G+NLTAADTCI++DSDWNPQ D+QA+ARCHRIGQ+K V IYRL++
Sbjct: 543 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLIT 602
Query: 351 HSTYQVHLF 359
++Y+ +F
Sbjct: 603 RNSYEREMF 611
Score = 98 (39.6 bits), Expect = 9.1e-44, Sum P(2) = 9.1e-44
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 4 ILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
ILKP LRRLK DV NL PK+ T+I+ + Q+ Y +L K
Sbjct: 367 ILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEK 410
Score = 46 (21.3 bits), Expect = 2.6e-38, Sum P(2) = 2.6e-38
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 123 DLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEPCENSS--NAQDVPSAEEKNVDEIL 177
D EIDR+ D DD + K P E+S+ QD+ A+ + ++++
Sbjct: 66 DYVEIDRILDFSRSTDDNGEPVTHYLVKWCSLPYEDSTWELKQDIDQAKIEEFEKLM 122
>UNIPROTKB|E2QUR1 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AAEX03009852
Ensembl:ENSCAFT00000009072 Uniprot:E2QUR1
Length = 2200
Score = 411 (149.7 bits), Expect = 1.2e-43, Sum P(2) = 1.2e-43
Identities = 85/192 (44%), Positives = 126/192 (65%)
Query: 179 HVNV-KMTNVTMVLRNIISHPYLIN-KPYRIVDGKKEMVCD--------ENIVSSSGKMI 228
H N+ + N M LR +HPYLIN +I+ +E C + +V S+GK++
Sbjct: 695 HTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFRE-ACHIIPHDFHLQAMVRSAGKLV 753
Query: 229 VLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN 288
++++LL KLK HK L+FS MV+ L+ +E+ + Y Y R+ G +R R A+ +F+
Sbjct: 754 LIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFS 813
Query: 289 G-STEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYR 347
++ VFLL TRAGG G+NLTAADTCI++DSDWNPQ D+QA+ARCHRIGQ+K V +YR
Sbjct: 814 KPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYR 873
Query: 348 LVSHSTYQVHLF 359
L++ ++Y+ +F
Sbjct: 874 LITRNSYEREMF 885
Score = 98 (39.6 bits), Expect = 1.2e-43, Sum P(2) = 1.2e-43
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 4 ILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
ILKP LRRLK DV NL PK+ T+I+ + Q+ Y +L K
Sbjct: 641 ILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEK 684
Score = 45 (20.9 bits), Expect = 4.4e-38, Sum P(2) = 4.4e-38
Identities = 23/83 (27%), Positives = 37/83 (44%)
Query: 84 ESTLSNASSV--KAGKREQTIDSNQL----VQQPKR-RKCSLNKTYDLTEIDRMF---DS 133
+S L+ + V K KR + D++ + Q P+ + S+ K ++ R D
Sbjct: 147 KSKLNTITPVVGKKRKRNTSSDNSDVEVMPAQSPREDEESSIQKRRSNRQVKRKKYTEDL 206
Query: 134 MIE-RDDTSDTEVQVEDKIKVEP 155
I+ DD + EV V IK EP
Sbjct: 207 DIKITDDEEEEEVDVTGPIKTEP 229
>UNIPROTKB|F1RTI9 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:CU695129 Ensembl:ENSSSCT00000013830 Uniprot:F1RTI9
Length = 1073
Score = 386 (140.9 bits), Expect = 1.2e-43, Sum P(2) = 1.2e-43
Identities = 82/188 (43%), Positives = 120/188 (63%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTN 241
+++ N+ M LR +HPYL + + DE+IVS+SGKM+VL++LL KLK+
Sbjct: 450 MRLLNILMQLRKCCNHPYLFDG----AEPGPPYTTDEHIVSNSGKMVVLDKLLAKLKEQG 505
Query: 242 HKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERN------------DAVQQFN- 288
+ L+FS M ++L+ +E+ C+ Y Y RL G +EER +A++ FN
Sbjct: 506 SRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEERENGFLQIYFRRRREAIEAFNV 565
Query: 289 -GSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYR 347
S+ + +F+LSTRAGG G+NL +AD ILYDSDWNPQVD+QA R HRIGQ KPV ++R
Sbjct: 566 PNSSRF-IFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFR 624
Query: 348 LVSHSTYQ 355
L++ +T +
Sbjct: 625 LITDNTVE 632
Score = 114 (45.2 bits), Expect = 1.2e-43, Sum P(2) = 1.2e-43
Identities = 24/49 (48%), Positives = 30/49 (61%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +LKPF LRR+K DV +LPPKK I + Q YTK+L K I
Sbjct: 390 LHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDI 438
>WB|WBGene00007053 [details] [associations]
symbol:chd-7 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00592
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR023780 KO:K14437 GeneTree:ENSGT00560000077077
EMBL:FO080504 EMBL:FO080107 RefSeq:NP_491426.2 PaxDb:O61845
EnsemblMetazoa:T04D1.4 GeneID:172079 KEGG:cel:CELE_T04D1.4
UCSC:T04D1.4 CTD:172079 WormBase:T04D1.4 HOGENOM:HOG000213105
InParanoid:O61845 OMA:LLAFRME NextBio:873933 Uniprot:O61845
Length = 2967
Score = 421 (153.3 bits), Expect = 1.2e-43, Sum P(2) = 1.2e-43
Identities = 85/201 (42%), Positives = 133/201 (66%)
Query: 170 EKNVDEILHHVNV-KMTNVTMVLRNIISHPYLIN-------KPYRIV--DGKKEMVCDEN 219
E+N + + + NV M LR +HP+LIN +R+ D +E + +
Sbjct: 1456 ERNFSHLCKGTSAPSLMNVMMELRKCCNHPFLINGAEEAIMNDFRLAHPDWDEETLAHKA 1515
Query: 220 IVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEE 279
++ +SGK++++ +LL KL++ HK L+FS MVKVL+ +EE + +Y + R+ G++R +
Sbjct: 1516 LIQASGKVVLIEKLLPKLRKDGHKVLIFSQMVKVLDLLEEFLISMSYPFERIDGNVRGDL 1575
Query: 280 RNDAVQQFNG-STEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIG 338
R A+ +F+ +++ VFLL TRAGG G+NLTAADT I++DSDWNPQ D+QA+ARCHRIG
Sbjct: 1576 RQAAIDRFSKENSDRFVFLLCTRAGGLGINLTAADTVIIFDSDWNPQNDLQAQARCHRIG 1635
Query: 339 QTKPVCIYRLVSHSTYQVHLF 359
Q K V +YRL++ +TY+ +F
Sbjct: 1636 QKKLVKVYRLITSNTYEREMF 1656
Score = 91 (37.1 bits), Expect = 1.2e-43, Sum P(2) = 1.2e-43
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+ ILKP LRRLK DV +L PK+ T+I+ + Q+ Y +L +
Sbjct: 1411 LQEILKPMMLRRLKEDVEKSLGPKEETIIEVQLSDMQKKFYRAILER 1457
Score = 56 (24.8 bits), Expect = 5.9e-40, Sum P(2) = 5.9e-40
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 144 EVQVEDKIKVEPCENSSNAQDVPSAE 169
E + E+K+K EP EN N + V + E
Sbjct: 1014 EEKSEEKVKKEPKENGENGESVGNGE 1039
Score = 42 (19.8 bits), Expect = 1.7e-38, Sum P(2) = 1.7e-38
Identities = 17/69 (24%), Positives = 29/69 (42%)
Query: 84 ESTLSNASSVKAGKREQTIDSNQLVQQPKRRK---CSLNKTYDLTEIDRMFDSMIERDDT 140
ES+ S S E+ ++ Q + + K R C +L EID+ ++ I+R
Sbjct: 1039 ESSKSKTESETNEIEEEEVE--QFLIKWKGRSYVHCEWKTAAELLEIDKRVEAKIKRFKV 1096
Query: 141 SDTEVQVED 149
+ED
Sbjct: 1097 KKMSSYIED 1105
Score = 39 (18.8 bits), Expect = 3.6e-38, Sum P(2) = 3.6e-38
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 138 DDTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEKNVDE 175
DD+S V +K + EN + ++ EE+ DE
Sbjct: 810 DDSSP--VDQSTPVKADDIENFAGVEETFGEEEEVQDE 845
Score = 38 (18.4 bits), Expect = 4.6e-38, Sum P(2) = 4.6e-38
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 138 DDTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEKNVDEI 176
++T E +V+D+ E S+ D+ E+ + I
Sbjct: 833 EETFGEEEEVQDEDDDEASSAKSSKDDIKEEEDDDTSTI 871
>UNIPROTKB|Q9HCK8 [details] [associations]
symbol:CHD8 "Chromodomain-helicase-DNA-binding protein 8"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0070016 "armadillo repeat
domain binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IDA]
[GO:0030178 "negative regulation of Wnt receptor signaling pathway"
evidence=IDA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003678 "DNA helicase activity" evidence=IMP] [GO:0035064
"methylated histone residue binding" evidence=IDA] [GO:0045945
"positive regulation of transcription from RNA polymerase III
promoter" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IMP] [GO:0043234 "protein complex" evidence=IDA]
[GO:0002039 "p53 binding" evidence=ISS] [GO:0008013 "beta-catenin
binding" evidence=IDA] [GO:0071339 "MLL1 complex" evidence=IDA]
[GO:0042393 "histone binding" evidence=ISS] [GO:0032508 "DNA duplex
unwinding" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 Pfam:PF00385
GO:GO:0005524 GO:GO:0045892 GO:GO:0043066 GO:GO:0003677
GO:GO:0001701 GO:GO:0045944 GO:GO:0006351 GO:GO:0035064
GO:GO:0008013 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0043044 GO:GO:0071339 GO:GO:0002039 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0008094 HOVERGEN:HBG107676 EMBL:CR749315
EMBL:AL834524 EMBL:AL135744 EMBL:AL161747 EMBL:CB043942
EMBL:AB046784 EMBL:AK131077 EMBL:BC011695 EMBL:BC025964
EMBL:BC036920 EMBL:BC063693 EMBL:BC073903 EMBL:BC098452
IPI:IPI00398992 IPI:IPI00719073 RefSeq:NP_001164100.1
RefSeq:NP_065971.2 UniGene:Hs.530698 PDB:2CKA PDB:2DL6 PDBsum:2CKA
PDBsum:2DL6 ProteinModelPortal:Q9HCK8 SMR:Q9HCK8 IntAct:Q9HCK8
STRING:Q9HCK8 PhosphoSite:Q9HCK8 DMDM:226706293 PaxDb:Q9HCK8
PRIDE:Q9HCK8 Ensembl:ENST00000399982 Ensembl:ENST00000430710
Ensembl:ENST00000557364 GeneID:57680 KEGG:hsa:57680 UCSC:uc001war.2
UCSC:uc001was.2 CTD:57680 GeneCards:GC14M021853 HGNC:HGNC:20153
HPA:HPA000849 MIM:610528 neXtProt:NX_Q9HCK8 PharmGKB:PA134957052
KO:K04494 OMA:FLAYMED EvolutionaryTrace:Q9HCK8 GenomeRNAi:57680
NextBio:64494 ArrayExpress:Q9HCK8 Bgee:Q9HCK8 CleanEx:HS_CHD8
Genevestigator:Q9HCK8 GermOnline:ENSG00000100888 Uniprot:Q9HCK8
Length = 2581
Score = 411 (149.7 bits), Expect = 1.8e-43, Sum P(2) = 1.8e-43
Identities = 85/192 (44%), Positives = 126/192 (65%)
Query: 179 HVNV-KMTNVTMVLRNIISHPYLIN-KPYRIVDGKKEMVCD--------ENIVSSSGKMI 228
H N+ + N M LR +HPYLIN +I+ +E C + +V S+GK++
Sbjct: 1078 HTNMPNLLNTMMELRKCCNHPYLINGAEEKILTEFRE-ACHIIPHDFHLQAMVRSAGKLV 1136
Query: 229 VLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN 288
++++LL KLK HK L+FS MV+ L+ +E+ + Y Y R+ G +R R A+ +F+
Sbjct: 1137 LIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFS 1196
Query: 289 G-STEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYR 347
++ VFLL TRAGG G+NLTAADTCI++DSDWNPQ D+QA+ARCHRIGQ+K V +YR
Sbjct: 1197 KPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYR 1256
Query: 348 LVSHSTYQVHLF 359
L++ ++Y+ +F
Sbjct: 1257 LITRNSYEREMF 1268
Score = 98 (39.6 bits), Expect = 1.8e-43, Sum P(2) = 1.8e-43
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 4 ILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
ILKP LRRLK DV NL PK+ T+I+ + Q+ Y +L K
Sbjct: 1024 ILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEK 1067
Score = 43 (20.2 bits), Expect = 1.1e-37, Sum P(2) = 1.1e-37
Identities = 23/83 (27%), Positives = 37/83 (44%)
Query: 84 ESTLSNASSV--KAGKREQTIDSNQL----VQQPKR-RKCSLNKTYDLTEIDRMF---DS 133
+S L+ + V K KR + D++ + Q P+ + S+ K ++ R D
Sbjct: 530 KSKLNTITPVVGKKRKRNTSSDNSDVEVMPAQSPREDEESSIQKRRSNRQVKRKKYTEDL 589
Query: 134 MIE-RDDTSDTEVQVEDKIKVEP 155
I+ DD + EV V IK EP
Sbjct: 590 DIKITDDEEEEEVDVTGPIKPEP 612
>UNIPROTKB|F1NVT7 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 GeneTree:ENSGT00560000077077 EMBL:AADN02019534
EMBL:AADN02019532 EMBL:AADN02019533 IPI:IPI00818616
Ensembl:ENSGALT00000040615 ArrayExpress:F1NVT7 Uniprot:F1NVT7
Length = 1257
Score = 397 (144.8 bits), Expect = 2.6e-43, Sum P(2) = 2.6e-43
Identities = 80/190 (42%), Positives = 122/190 (64%)
Query: 179 HVNVKMTNVTMVLRNIISHPYLIN-KPYRIVDGKKEMVCDEN-------IVSSSGKMIVL 230
H + N M LR +HPYLIN +I++ ++ E ++ ++GK++++
Sbjct: 651 HNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPEAPDFQLQAMIQAAGKLVLI 710
Query: 231 NQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQF-NG 289
++LL KL HK L+FS MV+ L+ +E+ + Y Y R+ G +R R A+ +F
Sbjct: 711 DKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKP 770
Query: 290 STEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLV 349
++ VFLL TRAGG G+NLTAADTCI++DSDWNPQ D+QA+ARCHRIGQ+K V +YRL+
Sbjct: 771 DSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLI 830
Query: 350 SHSTYQVHLF 359
+ ++Y+ +F
Sbjct: 831 TRNSYEREMF 840
Score = 102 (41.0 bits), Expect = 2.6e-43, Sum P(2) = 2.6e-43
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+ +ILKP LRRLK DV NL PK+ T+I+ + Q+ Y +L K
Sbjct: 593 LQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEK 639
>UNIPROTKB|F1MLB2 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071339 "MLL1 complex" evidence=IEA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IEA]
[GO:0045945 "positive regulation of transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=IEA] [GO:0030178 "negative regulation of
Wnt receptor signaling pathway" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003678 "DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0002039 "p53 binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 GO:GO:0008094 GeneTree:ENSGT00560000077077
OMA:FLAYMED EMBL:DAAA02028315 EMBL:DAAA02028312 EMBL:DAAA02028313
EMBL:DAAA02028314 IPI:IPI01017729 Ensembl:ENSBTAT00000027215
Uniprot:F1MLB2
Length = 2537
Score = 409 (149.0 bits), Expect = 2.8e-43, Sum P(2) = 2.8e-43
Identities = 85/193 (44%), Positives = 126/193 (65%)
Query: 179 HVNV-KMTNVTMVLRNIISHPYLINK--PYRIVDGKKEMVCD--------ENIVSSSGKM 227
H N+ + N M LR +HPYLIN +I+ +E C + +V S+GK+
Sbjct: 1031 HTNMPNLLNTMMELRKCCNHPYLINAGAEEKILTEFRE-ACHIIPHDFHLQAMVRSAGKL 1089
Query: 228 IVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQF 287
+++++LL KLK HK L+FS MV+ L+ +E+ + Y Y R+ G +R R A+ +F
Sbjct: 1090 VLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRF 1149
Query: 288 NG-STEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIY 346
+ ++ VFLL TRAGG G+NLTAADTCI++DSDWNPQ D+QA+ARCHRIGQ+K V +Y
Sbjct: 1150 SKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVY 1209
Query: 347 RLVSHSTYQVHLF 359
RL++ ++Y+ +F
Sbjct: 1210 RLITRNSYEREMF 1222
Score = 98 (39.6 bits), Expect = 2.8e-43, Sum P(2) = 2.8e-43
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 4 ILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
ILKP LRRLK DV NL PK+ T+I+ + Q+ Y +L K
Sbjct: 977 ILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEK 1020
Score = 45 (20.9 bits), Expect = 1.0e-37, Sum P(2) = 1.0e-37
Identities = 23/83 (27%), Positives = 37/83 (44%)
Query: 84 ESTLSNASSV--KAGKREQTIDSNQL----VQQPKR-RKCSLNKTYDLTEIDRMF---DS 133
+S L+ + V K KR + D++ + Q P+ + S+ K ++ R D
Sbjct: 483 KSKLNTITPVVGKKRKRNTSSDNSDVEVMPAQSPREDEESSIQKRRSNRQVKRKKYTEDL 542
Query: 134 MIE-RDDTSDTEVQVEDKIKVEP 155
I+ DD + EV V IK EP
Sbjct: 543 DIKITDDEEEEEVDVTGPIKTEP 565
>UNIPROTKB|F1S8J5 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071339 "MLL1 complex" evidence=IEA] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=IEA]
[GO:0045945 "positive regulation of transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=IEA] [GO:0030178 "negative regulation of
Wnt receptor signaling pathway" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003678 "DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0002039 "p53 binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0045945 GO:GO:0030178 GO:GO:0060070
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 GO:GO:0008094 GeneTree:ENSGT00560000077077
OMA:FLAYMED EMBL:FP340603 Ensembl:ENSSSCT00000002379
ArrayExpress:F1S8J5 Uniprot:F1S8J5
Length = 2569
Score = 409 (149.0 bits), Expect = 2.9e-43, Sum P(2) = 2.9e-43
Identities = 85/193 (44%), Positives = 126/193 (65%)
Query: 179 HVNV-KMTNVTMVLRNIISHPYLINK--PYRIVDGKKEMVCD--------ENIVSSSGKM 227
H N+ + N M LR +HPYLIN +I+ +E C + +V S+GK+
Sbjct: 1078 HTNMPNLLNTMMELRKCCNHPYLINAGAEEKILTEFRE-ACHIIPHDFHLQAMVRSAGKL 1136
Query: 228 IVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQF 287
+++++LL KLK HK L+FS MV+ L+ +E+ + Y Y R+ G +R R A+ +F
Sbjct: 1137 VLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRF 1196
Query: 288 NG-STEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIY 346
+ ++ VFLL TRAGG G+NLTAADTCI++DSDWNPQ D+QA+ARCHRIGQ+K V +Y
Sbjct: 1197 SKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVY 1256
Query: 347 RLVSHSTYQVHLF 359
RL++ ++Y+ +F
Sbjct: 1257 RLITRNSYEREMF 1269
Score = 98 (39.6 bits), Expect = 2.9e-43, Sum P(2) = 2.9e-43
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 4 ILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
ILKP LRRLK DV NL PK+ T+I+ + Q+ Y +L K
Sbjct: 1024 ILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEK 1067
Score = 45 (20.9 bits), Expect = 1.1e-37, Sum P(2) = 1.1e-37
Identities = 23/83 (27%), Positives = 37/83 (44%)
Query: 84 ESTLSNASSV--KAGKREQTIDSNQL----VQQPKR-RKCSLNKTYDLTEIDRMF---DS 133
+S L+ + V K KR + D++ + Q P+ + S+ K ++ R D
Sbjct: 530 KSKLNTITPVVGKKRKRNTSSDNSDVEVMPAQSPREDEESSIQKRRSNRQVKRKKYTEDL 589
Query: 134 MIE-RDDTSDTEVQVEDKIKVEP 155
I+ DD + EV V IK EP
Sbjct: 590 DIKITDDEEEEEVDVTGPIKTEP 612
>RGD|620696 [details] [associations]
symbol:Chd8 "chromodomain helicase DNA binding protein 8"
species:10116 "Rattus norvegicus" [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0002039 "p53 binding"
evidence=ISO;ISS] [GO:0003677 "DNA binding" evidence=ISO;ISS]
[GO:0003678 "DNA helicase activity" evidence=ISO;ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=ISO;ISS] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008013 "beta-catenin binding" evidence=ISO;IDA] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISO;ISS] [GO:0030178
"negative regulation of Wnt receptor signaling pathway"
evidence=ISO;IDA] [GO:0032508 "DNA duplex unwinding" evidence=ISO]
[GO:0035064 "methylated histone residue binding" evidence=ISO;ISS]
[GO:0042393 "histone binding" evidence=ISO;ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO;ISS] [GO:0043066
"negative regulation of apoptotic process" evidence=ISO;ISS]
[GO:0043234 "protein complex" evidence=ISO;IDA] [GO:0045892
"negative regulation of transcription, DNA-dependent"
evidence=ISO;IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO;ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO;ISS] [GO:0045945 "positive regulation of
transcription from RNA polymerase III promoter" evidence=ISO;ISS]
[GO:0060070 "canonical Wnt receptor signaling pathway"
evidence=ISO;IDA] [GO:0070016 "armadillo repeat domain binding"
evidence=IPI] [GO:0071339 "MLL1 complex" evidence=ISO;ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 RGD:620696 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0006351 GO:GO:0035064 GO:GO:0008013
GO:GO:0045945 GO:GO:0030178 GO:GO:0060070 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
GO:GO:0002039 EMBL:CH474040 InterPro:IPR023780 PROSITE:PS00598
GO:GO:0008094 HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077
HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC CTD:57680 KO:K04494
EMBL:AF169825 IPI:IPI00201110 IPI:IPI00923717 RefSeq:NP_075222.2
UniGene:Rn.98337 STRING:Q9JIX5 PhosphoSite:Q9JIX5 PRIDE:Q9JIX5
Ensembl:ENSRNOT00000022593 GeneID:65027 KEGG:rno:65027
UCSC:RGD:620696 NextBio:613802 Genevestigator:Q9JIX5 Uniprot:Q9JIX5
Length = 2581
Score = 409 (149.0 bits), Expect = 3.0e-43, Sum P(2) = 3.0e-43
Identities = 83/191 (43%), Positives = 123/191 (64%)
Query: 179 HVNV-KMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCD--------ENIVSSSGKMIV 229
H N+ + N M LR +HPYLIN + + C + +V S+GK+++
Sbjct: 1078 HTNMPNLLNTMMELRKCCNHPYLINGAEEKILMEFREACHIIPQDFHLQAMVRSAGKLVL 1137
Query: 230 LNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG 289
+++LL KLK HK L+FS MV+ L+ +E+ + Y Y R+ G +R R A+ +F+
Sbjct: 1138 IDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSK 1197
Query: 290 -STEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRL 348
++ VFLL TRAGG G+NLTAADTCI++DSDWNPQ D+QA+ARCHRIGQ+K V +YRL
Sbjct: 1198 PDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRL 1257
Query: 349 VSHSTYQVHLF 359
++ ++Y+ +F
Sbjct: 1258 ITRNSYEREMF 1268
Score = 98 (39.6 bits), Expect = 3.0e-43, Sum P(2) = 3.0e-43
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 4 ILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
ILKP LRRLK DV NL PK+ T+I+ + Q+ Y +L K
Sbjct: 1024 ILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEK 1067
Score = 43 (20.2 bits), Expect = 1.8e-37, Sum P(2) = 1.8e-37
Identities = 23/83 (27%), Positives = 37/83 (44%)
Query: 84 ESTLSNASSV--KAGKREQTIDSNQL----VQQPKR-RKCSLNKTYDLTEIDRMF---DS 133
+S L+ + V K KR + D++ + Q P+ + S+ K ++ R D
Sbjct: 530 KSKLNTITPVVGKKRKRNTSSDNSDVEVMPAQSPREDEESSIQKRRSNRQVKRKKYTEDL 589
Query: 134 MIE-RDDTSDTEVQVEDKIKVEP 155
I+ DD + EV V IK EP
Sbjct: 590 DIKITDDEEEEEVDVTGPIKPEP 612
>MGI|MGI:1915022 [details] [associations]
symbol:Chd8 "chromodomain helicase DNA binding protein 8"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0002039 "p53 binding" evidence=IPI] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=ISO;IDA] [GO:0003678 "DNA helicase activity" evidence=ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008013
"beta-catenin binding" evidence=ISO] [GO:0008094 "DNA-dependent
ATPase activity" evidence=ISO] [GO:0016055 "Wnt receptor signaling
pathway" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0030178 "negative regulation of Wnt receptor
signaling pathway" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0035064 "methylated histone residue binding"
evidence=ISO] [GO:0042393 "histone binding" evidence=IDA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=ISO]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IMP;IDA] [GO:0043234 "protein complex" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO;IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0045945 "positive regulation of transcription
from RNA polymerase III promoter" evidence=ISO] [GO:0060070
"canonical Wnt receptor signaling pathway" evidence=ISO]
[GO:0070016 "armadillo repeat domain binding" evidence=ISO]
[GO:0071339 "MLL1 complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 MGI:MGI:1915022 Pfam:PF00385 GO:GO:0005524
GO:GO:0045892 GO:GO:0043066 GO:GO:0003677 GO:GO:0001701
GO:GO:0045944 GO:GO:0006351 GO:GO:0035064 GO:GO:0008013
GO:GO:0045945 GO:GO:0030178 GO:GO:0060070 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0043044 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 GO:GO:0008094
HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077
HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC CTD:57680 KO:K04494
OMA:FLAYMED EMBL:DQ190419 EMBL:AY863219 EMBL:AK129393 EMBL:AK160299
IPI:IPI00858099 IPI:IPI00923681 RefSeq:NP_963999.2
UniGene:Mm.289934 ProteinModelPortal:Q09XV5 SMR:Q09XV5
IntAct:Q09XV5 STRING:Q09XV5 PhosphoSite:Q09XV5 PaxDb:Q09XV5
PRIDE:Q09XV5 Ensembl:ENSMUST00000089752 GeneID:67772 KEGG:mmu:67772
UCSC:uc007tot.1 UCSC:uc007tov.1 InParanoid:Q09XV5 ChiTaRS:CHD8
NextBio:325525 Bgee:Q09XV5 Genevestigator:Q09XV5 Uniprot:Q09XV5
Length = 2582
Score = 409 (149.0 bits), Expect = 3.0e-43, Sum P(2) = 3.0e-43
Identities = 83/191 (43%), Positives = 123/191 (64%)
Query: 179 HVNV-KMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCD--------ENIVSSSGKMIV 229
H N+ + N M LR +HPYLIN + + C + +V S+GK+++
Sbjct: 1080 HTNMPNLLNTMMELRKCCNHPYLINGAEEKILMEFREACHIIPQDFHLQAMVRSAGKLVL 1139
Query: 230 LNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG 289
+++LL KLK HK L+FS MV+ L+ +E+ + Y Y R+ G +R R A+ +F+
Sbjct: 1140 IDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSK 1199
Query: 290 -STEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRL 348
++ VFLL TRAGG G+NLTAADTCI++DSDWNPQ D+QA+ARCHRIGQ+K V +YRL
Sbjct: 1200 PDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRL 1259
Query: 349 VSHSTYQVHLF 359
++ ++Y+ +F
Sbjct: 1260 ITRNSYEREMF 1270
Score = 98 (39.6 bits), Expect = 3.0e-43, Sum P(2) = 3.0e-43
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 4 ILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
ILKP LRRLK DV NL PK+ T+I+ + Q+ Y +L K
Sbjct: 1026 ILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEK 1069
Score = 43 (20.2 bits), Expect = 1.8e-37, Sum P(2) = 1.8e-37
Identities = 23/83 (27%), Positives = 37/83 (44%)
Query: 84 ESTLSNASSV--KAGKREQTIDSNQL----VQQPKR-RKCSLNKTYDLTEIDRMF---DS 133
+S L+ + V K KR + D++ + Q P+ + S+ K ++ R D
Sbjct: 532 KSKLNTITPVVGKKRKRNTSSDNSDVEVMPAQSPREDEESSIQKRRSNRQVKRKKYTEDL 591
Query: 134 MIE-RDDTSDTEVQVEDKIKVEP 155
I+ DD + EV V IK EP
Sbjct: 592 DIKITDDEEEEEVDVTGPIKPEP 614
>UNIPROTKB|E2QUS7 [details] [associations]
symbol:CHD8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:FLAYMED EMBL:AAEX03009852
Ensembl:ENSCAFT00000009065 Uniprot:E2QUS7
Length = 2586
Score = 409 (149.0 bits), Expect = 3.0e-43, Sum P(2) = 3.0e-43
Identities = 85/193 (44%), Positives = 126/193 (65%)
Query: 179 HVNV-KMTNVTMVLRNIISHPYLINK--PYRIVDGKKEMVCD--------ENIVSSSGKM 227
H N+ + N M LR +HPYLIN +I+ +E C + +V S+GK+
Sbjct: 1078 HTNMPNLLNTMMELRKCCNHPYLINAGAEEKILTEFRE-ACHIIPHDFHLQAMVRSAGKL 1136
Query: 228 IVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQF 287
+++++LL KLK HK L+FS MV+ L+ +E+ + Y Y R+ G +R R A+ +F
Sbjct: 1137 VLIDKLLPKLKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRF 1196
Query: 288 NG-STEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIY 346
+ ++ VFLL TRAGG G+NLTAADTCI++DSDWNPQ D+QA+ARCHRIGQ+K V +Y
Sbjct: 1197 SKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVY 1256
Query: 347 RLVSHSTYQVHLF 359
RL++ ++Y+ +F
Sbjct: 1257 RLITRNSYEREMF 1269
Score = 98 (39.6 bits), Expect = 3.0e-43, Sum P(2) = 3.0e-43
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 4 ILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
ILKP LRRLK DV NL PK+ T+I+ + Q+ Y +L K
Sbjct: 1024 ILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEK 1067
Score = 45 (20.9 bits), Expect = 1.1e-37, Sum P(2) = 1.1e-37
Identities = 23/83 (27%), Positives = 37/83 (44%)
Query: 84 ESTLSNASSV--KAGKREQTIDSNQL----VQQPKR-RKCSLNKTYDLTEIDRMF---DS 133
+S L+ + V K KR + D++ + Q P+ + S+ K ++ R D
Sbjct: 530 KSKLNTITPVVGKKRKRNTSSDNSDVEVMPAQSPREDEESSIQKRRSNRQVKRKKYTEDL 589
Query: 134 MIE-RDDTSDTEVQVEDKIKVEP 155
I+ DD + EV V IK EP
Sbjct: 590 DIKITDDEEEEEVDVTGPIKTEP 612
>FB|FBgn0011604 [details] [associations]
symbol:Iswi "Imitation SWI" species:7227 "Drosophila
melanogaster" [GO:0006338 "chromatin remodeling"
evidence=ISS;NAS;TAS] [GO:0016589 "NURF complex"
evidence=NAS;IDA;TAS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IGI;IDA] [GO:0000166 "nucleotide binding"
evidence=TAS] [GO:0016584 "nucleosome positioning" evidence=IDA]
[GO:0006334 "nucleosome assembly" evidence=IDA] [GO:0016590 "ACF
complex" evidence=NAS;IDA;TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0008623 "CHRAC"
evidence=NAS;IDA;TAS] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA;TAS] [GO:0042766 "nucleosome
mobilization" evidence=IDA;TAS] [GO:0016887 "ATPase activity"
evidence=NAS] [GO:0035060 "brahma complex" evidence=IDA]
[GO:0003678 "DNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006351 "transcription,
DNA-dependent" evidence=IDA] [GO:0005667 "transcription factor
complex" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0035076 "ecdysone
receptor-mediated signaling pathway" evidence=IGI] [GO:0007517
"muscle organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0042752 "regulation of circadian
rhythm" evidence=IMP] [GO:0006325 "chromatin organization"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0031213 "RSF complex"
evidence=IPI] [GO:0005700 "polytene chromosome" evidence=IDA]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=IDA]
[GO:0035063 "nuclear speck organization" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 EMBL:AE013599 GO:GO:0005524
GO:GO:0045892 GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0042752 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
GO:GO:0048813 GO:GO:0007517 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0005700 GO:GO:0035076 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0016589 GO:GO:0016590 GO:GO:0008623 GO:GO:0008094
ChiTaRS:SMARCA1 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 EMBL:L27127 EMBL:AY094908 EMBL:BT044562 PIR:A56533
RefSeq:NP_523719.1 RefSeq:NP_725203.1 RefSeq:NP_725204.1
UniGene:Dm.2581 PDB:1OFC PDBsum:1OFC ProteinModelPortal:Q24368
SMR:Q24368 DIP:DIP-24067N IntAct:Q24368 MINT:MINT-252539
STRING:Q24368 PaxDb:Q24368 PRIDE:Q24368 EnsemblMetazoa:FBtr0087841
EnsemblMetazoa:FBtr0087842 EnsemblMetazoa:FBtr0087843 GeneID:36390
KEGG:dme:Dmel_CG8625 CTD:36390 FlyBase:FBgn0011604
InParanoid:Q24368 OMA:EDYCHWR OrthoDB:EOG4M0CGK PhylomeDB:Q24368
EvolutionaryTrace:Q24368 GenomeRNAi:36390 NextBio:798287
Bgee:Q24368 GermOnline:CG8625 GO:GO:0031213 GO:GO:0070615
GO:GO:0035063 Uniprot:Q24368
Length = 1027
Score = 390 (142.3 bits), Expect = 4.3e-43, Sum P(2) = 4.3e-43
Identities = 77/176 (43%), Positives = 116/176 (65%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTN 241
+++ N+ M LR +HPYL + + D ++V +SGKM +L++LL KL++
Sbjct: 392 MRLQNILMQLRKCTNHPYLFDG----AEPGPPYTTDTHLVYNSGKMAILDKLLPKLQEQG 447
Query: 242 HKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLS 299
+ L+FS M ++L+ +E+ C NYNY RL G +E+RN +Q+FN S ++ +F+LS
Sbjct: 448 SRVLIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHEDRNRQIQEFNMDNSAKF-LFMLS 506
Query: 300 TRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
TRAGG G+NL AD I+YDSDWNPQ+D+QA R HRIGQ K V ++RL++ ST +
Sbjct: 507 TRAGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITESTVE 562
Score = 104 (41.7 bits), Expect = 4.3e-43, Sum P(2) = 4.3e-43
Identities = 24/49 (48%), Positives = 28/49 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +LKPF LRRLK +V L PKK I + Q YTKVL K I
Sbjct: 332 LHAVLKPFLLRRLKAEVEKRLKPKKEMKIFVGLSKMQRDWYTKVLLKDI 380
>UNIPROTKB|F1NSG3 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008015 "blood circulation" evidence=IEA] [GO:0021545 "cranial
nerve development" evidence=IEA] [GO:0030217 "T cell
differentiation" evidence=IEA] [GO:0030540 "female genitalia
development" evidence=IEA] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IEA] [GO:0040018 "positive regulation of
multicellular organism growth" evidence=IEA] [GO:0043584 "nose
development" evidence=IEA] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA] [GO:0048844 "artery morphogenesis"
evidence=IEA] [GO:0050890 "cognition" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0060041 "retina development
in camera-type eye" evidence=IEA] [GO:0060123 "regulation of growth
hormone secretion" evidence=IEA] [GO:0060324 "face development"
evidence=IEA] [GO:0001501 "skeletal system development"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003007 "heart morphogenesis" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0007512 "adult heart development" evidence=IEA] [GO:0007605
"sensory perception of sound" evidence=IEA] [GO:0007628 "adult
walking behavior" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0040018 GO:GO:0003682
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 IPI:IPI00590082
OMA:TFGVIFD GO:GO:0060123 GeneTree:ENSGT00560000077077
EMBL:AADN02022009 EMBL:AADN02022010 Ensembl:ENSGALT00000024950
ArrayExpress:F1NSG3 Uniprot:F1NSG3
Length = 2248
Score = 406 (148.0 bits), Expect = 4.3e-43, Sum P(2) = 4.3e-43
Identities = 84/189 (44%), Positives = 126/189 (66%)
Query: 181 NV-KMTNVTMVLRNIISHPYLIN-KPYRIVDGKKEMV-CD------ENIVSSSGKMIVLN 231
NV + N M LR +HPYLIN +I++ KE D + ++ ++GK+++++
Sbjct: 475 NVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNADSPDFQLQAMIQAAGKLVLID 534
Query: 232 QLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-S 290
+LL KLK H+ L+FS MV+ L+ +E+ + Y Y R+ G +R R A+ +F+
Sbjct: 535 KLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSRPD 594
Query: 291 TEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVS 350
++ VFLL TRAGG G+NLTAADTCI++DSDWNPQ D+QA+ARCHRIGQ+K V IYRL++
Sbjct: 595 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLIT 654
Query: 351 HSTYQVHLF 359
++Y+ +F
Sbjct: 655 RNSYEREMF 663
Score = 98 (39.6 bits), Expect = 4.3e-43, Sum P(2) = 4.3e-43
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 4 ILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
ILKP LRRLK DV NL PK+ T+I+ + Q+ Y +L K
Sbjct: 419 ILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEK 462
Score = 46 (21.3 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 123 DLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEPCENSS--NAQDVPSAEEKNVDEIL 177
D EIDR+ D DD + K P E+S+ QD+ A+ + ++++
Sbjct: 118 DYVEIDRILDFSRSTDDNGEPVTHYLVKWCSLPYEDSTWELKQDIDQAKIEEFEKLM 174
>UNIPROTKB|G4NCV5 [details] [associations]
symbol:MGG_01012 "ISWI chromatin-remodeling complex ATPase
ISW2" species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CM001235 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
SUPFAM:SSF101224 RefSeq:XP_003717932.1 EnsemblFungi:MGG_01012T0
GeneID:2674262 KEGG:mgr:MGG_01012 Uniprot:G4NCV5
Length = 1128
Score = 392 (143.0 bits), Expect = 4.8e-43, Sum P(2) = 4.8e-43
Identities = 82/193 (42%), Positives = 120/193 (62%)
Query: 170 EKNVDEI-----LHHVNVKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSS 224
EK++D + ++ N+ M LR +HPYL + + DE++V +S
Sbjct: 434 EKDIDAVNGANGKRESKTRLLNIVMQLRKCCNHPYL----FEGAEPGPPYTTDEHLVYNS 489
Query: 225 GKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAV 284
GKM+VL++LL +LK + L+FS M +VL+ +E+ CV Y Y R+ G +E+R A+
Sbjct: 490 GKMVVLDKLLKRLKAQGSRVLIFSQMSRVLDILEDYCVFREYKYSRIDGGTAHEDRIAAI 549
Query: 285 QQFN--GSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKP 342
++N GS ++ VFLL+TRAGG G+NLT AD IL+DSDWNPQ D+QA R HRIGQTK
Sbjct: 550 DEYNKPGSEKF-VFLLTTRAGGLGINLTTADIVILFDSDWNPQADLQAMDRAHRIGQTKQ 608
Query: 343 VCIYRLVSHSTYQ 355
V +YR + +T +
Sbjct: 609 VYVYRFLVDNTIE 621
Score = 103 (41.3 bits), Expect = 4.8e-43, Sum P(2) = 4.8e-43
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +L+PF LRR+K DV +L PKK + M Q Y K+L K I
Sbjct: 389 LHRVLRPFLLRRVKADVEKSLLPKKEVNLYLKMTEMQRTWYQKILEKDI 437
>MGI|MGI:2444748 [details] [associations]
symbol:Chd7 "chromodomain helicase DNA binding protein 7"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001501 "skeletal system development"
evidence=ISO] [GO:0001568 "blood vessel development" evidence=IMP]
[GO:0001701 "in utero embryonic development" evidence=ISO;IMP]
[GO:0003007 "heart morphogenesis" evidence=ISO;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0007417 "central
nervous system development" evidence=ISO] [GO:0007512 "adult heart
development" evidence=IMP] [GO:0007605 "sensory perception of
sound" evidence=IMP] [GO:0007626 "locomotory behavior"
evidence=IMP] [GO:0007628 "adult walking behavior" evidence=IMP]
[GO:0008015 "blood circulation" evidence=IMP] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0021545 "cranial nerve
development" evidence=ISO] [GO:0030217 "T cell differentiation"
evidence=ISO] [GO:0030540 "female genitalia development"
evidence=IMP] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0042471 "ear morphogenesis"
evidence=IMP] [GO:0042472 "inner ear morphogenesis"
evidence=ISO;IMP] [GO:0043010 "camera-type eye development"
evidence=IMP] [GO:0043584 "nose development" evidence=ISO;IMP]
[GO:0048752 "semicircular canal morphogenesis" evidence=IGI]
[GO:0048806 "genitalia development" evidence=ISO] [GO:0048844
"artery morphogenesis" evidence=IGI] [GO:0050890 "cognition"
evidence=ISO] [GO:0060021 "palate development" evidence=ISO;IMP]
[GO:0060041 "retina development in camera-type eye" evidence=ISO]
[GO:0060123 "regulation of growth hormone secretion" evidence=ISO]
[GO:0060173 "limb development" evidence=ISO] [GO:0060324 "face
development" evidence=ISO] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 MGI:MGI:2444748 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0003677
GO:GO:0008015 GO:GO:0003007 GO:GO:0050890 GO:GO:0001701
GO:GO:0040018 GO:GO:0007417 GO:GO:0006351 GO:GO:0003682
GO:GO:0016568 GO:GO:0043010 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0030540 GO:GO:0007628 GO:GO:0030217
GO:GO:0048752 InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150
CTD:55636 HOGENOM:HOG000246942 KO:K14437 OrthoDB:EOG4MCWZD
OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584 GO:GO:0060123 EMBL:AK042727
EMBL:AK171051 EMBL:AK171857 EMBL:AK172025 EMBL:AL732627
EMBL:AL805903 EMBL:BC034239 IPI:IPI00345676 IPI:IPI00666779
IPI:IPI00849588 RefSeq:NP_001074886.1 UniGene:Mm.138792
ProteinModelPortal:A2AJK6 SMR:A2AJK6 IntAct:A2AJK6 STRING:A2AJK6
PhosphoSite:A2AJK6 PaxDb:A2AJK6 PRIDE:A2AJK6
Ensembl:ENSMUST00000039267 Ensembl:ENSMUST00000051558
Ensembl:ENSMUST00000127476 GeneID:320790 KEGG:mmu:320790
UCSC:uc008rxy.1 UCSC:uc008rya.1 GeneTree:ENSGT00560000077077
InParanoid:A2AJK6 NextBio:397435 Bgee:A2AJK6 CleanEx:MM_CHD7
Genevestigator:A2AJK6 Uniprot:A2AJK6
Length = 2986
Score = 408 (148.7 bits), Expect = 5.4e-43, Sum P(2) = 5.4e-43
Identities = 84/189 (44%), Positives = 126/189 (66%)
Query: 181 NV-KMTNVTMVLRNIISHPYLIN-KPYRIVDGKKEMVCDEN-------IVSSSGKMIVLN 231
NV + N M LR +HPYLIN +I++ KE E+ ++ ++GK+++++
Sbjct: 1227 NVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLID 1286
Query: 232 QLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-S 290
+LL KLK H+ L+FS MV+ L+ +E+ + Y Y R+ G +R R A+ +F+
Sbjct: 1287 KLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPD 1346
Query: 291 TEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVS 350
++ VFLL TRAGG G+NLTAADTCI++DSDWNPQ D+QA+ARCHRIGQ+K V IYRL++
Sbjct: 1347 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLIT 1406
Query: 351 HSTYQVHLF 359
++Y+ +F
Sbjct: 1407 RNSYEREMF 1415
Score = 98 (39.6 bits), Expect = 5.4e-43, Sum P(2) = 5.4e-43
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 4 ILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
ILKP LRRLK DV NL PK+ T+I+ + Q+ Y +L K
Sbjct: 1171 ILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEK 1214
Score = 43 (20.2 bits), Expect = 3.2e-37, Sum P(2) = 3.2e-37
Identities = 13/57 (22%), Positives = 26/57 (45%)
Query: 123 DLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEPCENSS--NAQDVPSAEEKNVDEIL 177
D E+DR+ D DD + + K P E+S+ QD+ + + ++++
Sbjct: 870 DYVEVDRIMDFARSTDDRGEPVIHYLVKWCSLPYEDSTWELKQDIDQTKIEEFEKLM 926
>UNIPROTKB|Q9P2D1 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0007512 "adult heart development" evidence=IEA] [GO:0007605
"sensory perception of sound" evidence=IEA] [GO:0007628 "adult
walking behavior" evidence=IEA] [GO:0008015 "blood circulation"
evidence=IEA] [GO:0030540 "female genitalia development"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IEA] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA] [GO:0048844 "artery morphogenesis"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0003007 "heart morphogenesis"
evidence=IMP] [GO:0042472 "inner ear morphogenesis" evidence=IMP]
[GO:0043584 "nose development" evidence=IMP] [GO:0048806 "genitalia
development" evidence=IMP] [GO:0060021 "palate development"
evidence=IMP] [GO:0060041 "retina development in camera-type eye"
evidence=IMP] [GO:0001501 "skeletal system development"
evidence=IMP] [GO:0050890 "cognition" evidence=IMP] [GO:0007417
"central nervous system development" evidence=IMP] [GO:0021545
"cranial nerve development" evidence=IMP] [GO:0060123 "regulation
of growth hormone secretion" evidence=IMP] [GO:0003682 "chromatin
binding" evidence=TAS] [GO:0030217 "T cell differentiation"
evidence=IMP] [GO:0060173 "limb development" evidence=IMP]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0060324 "face development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0008015 GO:GO:0003007 GO:GO:0050890
GO:GO:0001701 GO:GO:0040018 GO:GO:0007417 GO:GO:0006351
GO:GO:0003682 GO:GO:0016568 GO:GO:0048806 GO:GO:0042472
GO:GO:0001501 GO:GO:0060041 GO:GO:0007605 GO:GO:0007512
GO:GO:0004386 GO:GO:0035116 GO:GO:0060324 GO:GO:0060021
GO:GO:0060173 GO:GO:0048844 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150 CTD:55636
KO:K14437 OrthoDB:EOG4MCWZD EMBL:AC023102 EMBL:AC113143
EMBL:AB037837 EMBL:AK000364 EMBL:AK000368 EMBL:BC014681
EMBL:BC051264 EMBL:BC053890 EMBL:BC068000 EMBL:BC080627
EMBL:BC110818 IPI:IPI00472901 IPI:IPI00794880 RefSeq:NP_060250.2
UniGene:Hs.20395 UniGene:Hs.733236 PDB:2CKC PDB:2V0E PDB:2V0F
PDBsum:2CKC PDBsum:2V0E PDBsum:2V0F ProteinModelPortal:Q9P2D1
SMR:Q9P2D1 DIP:DIP-48685N IntAct:Q9P2D1 STRING:Q9P2D1
PhosphoSite:Q9P2D1 DMDM:148877246 PaxDb:Q9P2D1 PRIDE:Q9P2D1
Ensembl:ENST00000307121 Ensembl:ENST00000423902
Ensembl:ENST00000525508 GeneID:55636 KEGG:hsa:55636 UCSC:uc003xue.3
GeneCards:GC08P061642 H-InvDB:HIX0007533 HGNC:HGNC:20626 MIM:214800
MIM:608765 MIM:608892 MIM:612370 neXtProt:NX_Q9P2D1 Orphanet:138
Orphanet:478 Orphanet:432 PharmGKB:PA134948695 InParanoid:Q9P2D1
OMA:TFGVIFD EvolutionaryTrace:Q9P2D1 GenomeRNAi:55636 NextBio:60291
ArrayExpress:Q9P2D1 Bgee:Q9P2D1 CleanEx:HS_CHD7
Genevestigator:Q9P2D1 GermOnline:ENSG00000171316 GO:GO:0021545
GO:GO:0043584 GO:GO:0060123 Uniprot:Q9P2D1
Length = 2997
Score = 408 (148.7 bits), Expect = 5.5e-43, Sum P(2) = 5.5e-43
Identities = 84/189 (44%), Positives = 126/189 (66%)
Query: 181 NV-KMTNVTMVLRNIISHPYLIN-KPYRIVDGKKEMVCDEN-------IVSSSGKMIVLN 231
NV + N M LR +HPYLIN +I++ KE E+ ++ ++GK+++++
Sbjct: 1237 NVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQAAGKLVLID 1296
Query: 232 QLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-S 290
+LL KLK H+ L+FS MV+ L+ +E+ + Y Y R+ G +R R A+ +F+
Sbjct: 1297 KLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPD 1356
Query: 291 TEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVS 350
++ VFLL TRAGG G+NLTAADTCI++DSDWNPQ D+QA+ARCHRIGQ+K V IYRL++
Sbjct: 1357 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLIT 1416
Query: 351 HSTYQVHLF 359
++Y+ +F
Sbjct: 1417 RNSYEREMF 1425
Score = 98 (39.6 bits), Expect = 5.5e-43, Sum P(2) = 5.5e-43
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 4 ILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
ILKP LRRLK DV NL PK+ T+I+ + Q+ Y +L K
Sbjct: 1181 ILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEK 1224
Score = 47 (21.6 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 123 DLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEPCENSS--NAQDVPSAEEKNVDEIL 177
D E+DR+ D DD + K P E+S+ QD+ A+ + ++++
Sbjct: 880 DYVEVDRIMDFARSTDDRGEPVTHYLVKWCSLPYEDSTWERRQDIDQAKIEEFEKLM 936
>RGD|1561046 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10116 "Rattus norvegicus" [GO:0000733 "DNA strand
renaturation" evidence=ISO] [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0007420 "brain development"
evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO] [GO:0030182
"neuron differentiation" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0090537 "CERF
complex" evidence=ISO] [GO:2000177 "regulation of neural precursor
cell proliferation" evidence=ISO] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISO] [GO:0070615 "nucleosome-dependent ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1561046 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00947680
PRIDE:D3ZIE5 Ensembl:ENSRNOT00000068478 UCSC:RGD:1561046
ArrayExpress:D3ZIE5 Uniprot:D3ZIE5
Length = 1034
Score = 378 (138.1 bits), Expect = 7.6e-43, Sum P(2) = 7.6e-43
Identities = 79/188 (42%), Positives = 120/188 (63%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTN 241
+++ N+ M LR +HPYL + + DE+IVS+SGKM+ L++LL ++K+
Sbjct: 427 MRLLNILMQLRKCCNHPYLFDG----AEPGPPYTTDEHIVSNSGKMVALDKLLARIKEQG 482
Query: 242 HKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERN------------DAVQQFNG 289
+ L+FS M ++L+ +E+ C+ Y Y RL G +EER +A++ FN
Sbjct: 483 SRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEERENLFLHKHNLFSTEAIEAFNA 542
Query: 290 --STEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYR 347
S+++ +F+LSTRAGG G+NL +AD ILYDSDWNPQVD+QA R HRIGQ KPV ++R
Sbjct: 543 PNSSKF-IFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFR 601
Query: 348 LVSHSTYQ 355
L++ +T +
Sbjct: 602 LITDNTVE 609
Score = 114 (45.2 bits), Expect = 7.6e-43, Sum P(2) = 7.6e-43
Identities = 24/49 (48%), Positives = 30/49 (61%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +LKPF LRR+K DV +LPPKK I + Q YTK+L K I
Sbjct: 367 LHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDI 415
>UNIPROTKB|E1BPM4 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0060324 "face development" evidence=IEA] [GO:0060123
"regulation of growth hormone secretion" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0050890 "cognition"
evidence=IEA] [GO:0048844 "artery morphogenesis" evidence=IEA]
[GO:0048752 "semicircular canal morphogenesis" evidence=IEA]
[GO:0043584 "nose development" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030540 "female genitalia development" evidence=IEA]
[GO:0030217 "T cell differentiation" evidence=IEA] [GO:0021545
"cranial nerve development" evidence=IEA] [GO:0008015 "blood
circulation" evidence=IEA] [GO:0007628 "adult walking behavior"
evidence=IEA] [GO:0007605 "sensory perception of sound"
evidence=IEA] [GO:0007512 "adult heart development" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0003007 "heart morphogenesis" evidence=IEA] [GO:0001701 "in
utero embryonic development" evidence=IEA] [GO:0001501 "skeletal
system development" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0008015
GO:GO:0003007 GO:GO:0050890 GO:GO:0001701 GO:GO:0040018
GO:GO:0007417 GO:GO:0003682 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 EMBL:DAAA02038386
EMBL:DAAA02038387 EMBL:DAAA02038388 IPI:IPI00697020
Ensembl:ENSBTAT00000026607 Uniprot:E1BPM4
Length = 2940
Score = 406 (148.0 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
Identities = 84/189 (44%), Positives = 126/189 (66%)
Query: 181 NV-KMTNVTMVLRNIISHPYLIN-KPYRIVDGKKEMV-CD------ENIVSSSGKMIVLN 231
NV + N M LR +HPYLIN +I++ KE D + ++ ++GK+++++
Sbjct: 1187 NVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNADSPDFQLQAMIQAAGKLVLID 1246
Query: 232 QLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-S 290
+LL KLK H+ L+FS MV+ L+ +E+ + Y Y R+ G +R R A+ +F+
Sbjct: 1247 KLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPD 1306
Query: 291 TEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVS 350
++ VFLL TRAGG G+NLTAADTCI++DSDWNPQ D+QA+ARCHRIGQ+K V IYRL++
Sbjct: 1307 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLIT 1366
Query: 351 HSTYQVHLF 359
++Y+ +F
Sbjct: 1367 RNSYEREMF 1375
Score = 98 (39.6 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 4 ILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
ILKP LRRLK DV NL PK+ T+I+ + Q+ Y +L K
Sbjct: 1131 ILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEK 1174
Score = 44 (20.5 bits), Expect = 4.0e-37, Sum P(2) = 4.0e-37
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 123 DLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEPCENSS--NAQDVPSAEEKNVDEIL 177
D E+DR+ D DD + K P E+S+ QD+ A+ + ++++
Sbjct: 830 DYVEVDRIMDFARSTDDRGEPVTHYLVKWCSLPYEDSTWELRQDIDQAKIEEFEKLM 886
>UNIPROTKB|F1PWD8 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0003682 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 OMA:TFGVIFD EMBL:AAEX03015818
EMBL:AAEX03015819 EMBL:AAEX03015820 Ensembl:ENSCAFT00000011497
GeneTree:ENSGT00700000105087 Uniprot:F1PWD8
Length = 2994
Score = 406 (148.0 bits), Expect = 8.9e-43, Sum P(2) = 8.9e-43
Identities = 84/189 (44%), Positives = 126/189 (66%)
Query: 181 NV-KMTNVTMVLRNIISHPYLIN-KPYRIVDGKKEMV-CD------ENIVSSSGKMIVLN 231
NV + N M LR +HPYLIN +I++ KE D + ++ ++GK+++++
Sbjct: 1236 NVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNADSPDFQLQAMIQAAGKLVLID 1295
Query: 232 QLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-S 290
+LL KLK H+ L+FS MV+ L+ +E+ + Y Y R+ G +R R A+ +F+
Sbjct: 1296 KLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPD 1355
Query: 291 TEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVS 350
++ VFLL TRAGG G+NLTAADTCI++DSDWNPQ D+QA+ARCHRIGQ+K V IYRL++
Sbjct: 1356 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLIT 1415
Query: 351 HSTYQVHLF 359
++Y+ +F
Sbjct: 1416 RNSYEREMF 1424
Score = 98 (39.6 bits), Expect = 8.9e-43, Sum P(2) = 8.9e-43
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 4 ILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
ILKP LRRLK DV NL PK+ T+I+ + Q+ Y +L K
Sbjct: 1180 ILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEK 1223
>UNIPROTKB|Q06A37 [details] [associations]
symbol:CHD7 "Chromodomain-helicase-DNA-binding protein 7"
species:9031 "Gallus gallus" [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00592 SMART:SM00717
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOVERGEN:HBG081150 EMBL:DQ978381 IPI:IPI00590082
RefSeq:NP_001071054.1 UniGene:Gga.20865 ProteinModelPortal:Q06A37
SMR:Q06A37 GeneID:421140 KEGG:gga:421140 CTD:55636
HOGENOM:HOG000246942 InParanoid:Q06A37 KO:K14437 OrthoDB:EOG4MCWZD
NextBio:20823957 Uniprot:Q06A37
Length = 3011
Score = 406 (148.0 bits), Expect = 9.0e-43, Sum P(2) = 9.0e-43
Identities = 84/189 (44%), Positives = 126/189 (66%)
Query: 181 NV-KMTNVTMVLRNIISHPYLIN-KPYRIVDGKKEMV-CD------ENIVSSSGKMIVLN 231
NV + N M LR +HPYLIN +I++ KE D + ++ ++GK+++++
Sbjct: 1238 NVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNADSPDFQLQAMIQAAGKLVLID 1297
Query: 232 QLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-S 290
+LL KLK H+ L+FS MV+ L+ +E+ + Y Y R+ G +R R A+ +F+
Sbjct: 1298 KLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSRPD 1357
Query: 291 TEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVS 350
++ VFLL TRAGG G+NLTAADTCI++DSDWNPQ D+QA+ARCHRIGQ+K V IYRL++
Sbjct: 1358 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLIT 1417
Query: 351 HSTYQVHLF 359
++Y+ +F
Sbjct: 1418 RNSYEREMF 1426
Score = 98 (39.6 bits), Expect = 9.0e-43, Sum P(2) = 9.0e-43
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 4 ILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
ILKP LRRLK DV NL PK+ T+I+ + Q+ Y +L K
Sbjct: 1182 ILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEK 1225
Score = 46 (21.3 bits), Expect = 2.6e-37, Sum P(2) = 2.6e-37
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 123 DLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEPCENSS--NAQDVPSAEEKNVDEIL 177
D EIDR+ D DD + K P E+S+ QD+ A+ + ++++
Sbjct: 881 DYVEIDRILDFSRSTDDNGEPVTHYLVKWCSLPYEDSTWELKQDIDQAKIEEFEKLM 937
>ZFIN|ZDB-GENE-070912-179 [details] [associations]
symbol:chd7 "chromodomain helicase DNA binding
protein 7" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0007368 "determination of left/right symmetry"
evidence=IMP] [GO:0001756 "somitogenesis" evidence=IMP] [GO:0060041
"retina development in camera-type eye" evidence=IMP] [GO:0021602
"cranial nerve morphogenesis" evidence=IMP] [GO:0001947 "heart
looping" evidence=IMP] [GO:0030282 "bone mineralization"
evidence=IMP] [GO:0042472 "inner ear morphogenesis" evidence=IMP]
[GO:0014029 "neural crest formation" evidence=IMP]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 ZFIN:ZDB-GENE-070912-179 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0001756 GO:GO:0042472
GO:GO:0060041 GO:GO:0004386 GO:GO:0001947 GO:GO:0030282
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 GeneTree:ENSGT00560000077077
GO:GO:0021602 EMBL:CR450710 GO:GO:0014029 IPI:IPI00493585
Ensembl:ENSDART00000016208 Ensembl:ENSDART00000135230
Uniprot:F1QGL1
Length = 3140
Score = 403 (146.9 bits), Expect = 1.0e-42, Sum P(2) = 1.0e-42
Identities = 83/189 (43%), Positives = 126/189 (66%)
Query: 181 NV-KMTNVTMVLRNIISHPYLIN-KPYRIVDGKKEM-VCDEN------IVSSSGKMIVLN 231
NV + N M LR +HPYLIN +I++ +E D+ ++ ++GK+++++
Sbjct: 1289 NVPNLLNTMMELRKCCNHPYLINGAEEKIMEEFRETHPLDQPEFHLQAMIQAAGKLVLID 1348
Query: 232 QLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-S 290
+LL KLK H+ L+FS MV+ L+ +E+ + Y Y R+ G +R R A+ +F+
Sbjct: 1349 KLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSRPD 1408
Query: 291 TEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVS 350
++ VFLL TRAGG G+NLTAADTCI++DSDWNPQ D+QA+ARCHRIGQ+K V IYRL++
Sbjct: 1409 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLIT 1468
Query: 351 HSTYQVHLF 359
++Y+ +F
Sbjct: 1469 RNSYEREMF 1477
Score = 101 (40.6 bits), Expect = 1.0e-42, Sum P(2) = 1.0e-42
Identities = 21/47 (44%), Positives = 28/47 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+ ILKP LRRLK DV NL PK+ T+I+ + Q+ Y +L K
Sbjct: 1222 LQGILKPMMLRRLKEDVEKNLAPKEETIIEVELTNVQKKYYRAILEK 1268
Score = 45 (20.9 bits), Expect = 7.6e-37, Sum P(2) = 7.6e-37
Identities = 20/82 (24%), Positives = 31/82 (37%)
Query: 94 KAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDTEVQVEDKIKV 153
K K +T + + ++PK K KT S + D S + E K K
Sbjct: 710 KEPKTPKTPKTPKTPKEPKEPKEKKVKTATPKPKSSKKPSAKKSDSESGNSTKKEAKRKR 769
Query: 154 EPCENSSNAQDVPSAEEKNVDE 175
EP S + P + E+ D+
Sbjct: 770 EPSVTSDVEKTPPQSPEEEDDD 791
>UNIPROTKB|B5DE69 [details] [associations]
symbol:chd8 "Chromodomain-helicase-DNA-binding protein 8"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005634 "nucleus"
evidence=ISS] [GO:0071339 "MLL1 complex" evidence=ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0016055 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG107676 CTD:57680
KO:K04494 EMBL:BC168549 RefSeq:NP_001131089.2 UniGene:Str.42730
GeneID:100192376 KEGG:xtr:100192376 Xenbase:XB-GENE-966847
Uniprot:B5DE69
Length = 2184
Score = 402 (146.6 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
Identities = 83/185 (44%), Positives = 122/185 (65%)
Query: 184 MTNVTMVLRNIISHPYLIN-KPYRIVDGKKEMVC----DENI---VSSSGKMIVLNQLLH 235
+ N M LR +HPYLI +I+ +E D ++ V SSGK++++++LL
Sbjct: 1028 LLNTMMELRKCCNHPYLITGAEEKIISEFREATPVVPPDFHVQAMVRSSGKLVLIDKLLP 1087
Query: 236 KLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-STEWG 294
KL+ HK L+FS MV+ L+ +E+ + Y Y R+ G +R R A+ +F+ ++
Sbjct: 1088 KLRAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNMRQAAIDRFSRPDSDRF 1147
Query: 295 VFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTY 354
VFLL TRAGG G+NLTAADTCI++DSDWNPQ D+QA+ARCHRIGQ+K V IYRL++ ++Y
Sbjct: 1148 VFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKIYRLITRNSY 1207
Query: 355 QVHLF 359
+ +F
Sbjct: 1208 EREMF 1212
Score = 98 (39.6 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 4 ILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
ILKP LRRLK DV NL PK+ T+I+ + Q+ Y +L K
Sbjct: 968 ILKPMMLRRLKEDVEKNLAPKQETIIEVELTNIQKKYYRAILEK 1011
Score = 50 (22.7 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
Identities = 21/66 (31%), Positives = 28/66 (42%)
Query: 90 ASSVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDTEVQVED 149
AS + E ++ + +Q KR+K T DL D I DD D EV V
Sbjct: 502 ASQASPAEDEDSVQKRRSNRQVKRKKY----TEDL-------DIKIT-DDEDDEEVDVTG 549
Query: 150 KIKVEP 155
+K EP
Sbjct: 550 PVKTEP 555
>UNIPROTKB|F1NLW6 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 EMBL:AADN02019534 EMBL:AADN02019532
EMBL:AADN02019533 IPI:IPI00572954 Ensembl:ENSGALT00000002030
ArrayExpress:F1NLW6 Uniprot:F1NLW6
Length = 2005
Score = 397 (144.8 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
Identities = 80/190 (42%), Positives = 122/190 (64%)
Query: 179 HVNVKMTNVTMVLRNIISHPYLIN-KPYRIVDGKKEMVCDEN-------IVSSSGKMIVL 230
H + N M LR +HPYLIN +I++ ++ E ++ ++GK++++
Sbjct: 526 HNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPEAPDFQLQAMIQAAGKLVLI 585
Query: 231 NQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQF-NG 289
++LL KL HK L+FS MV+ L+ +E+ + Y Y R+ G +R R A+ +F
Sbjct: 586 DKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKP 645
Query: 290 STEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLV 349
++ VFLL TRAGG G+NLTAADTCI++DSDWNPQ D+QA+ARCHRIGQ+K V +YRL+
Sbjct: 646 DSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLI 705
Query: 350 SHSTYQVHLF 359
+ ++Y+ +F
Sbjct: 706 TRNSYEREMF 715
Score = 102 (41.0 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+ +ILKP LRRLK DV NL PK+ T+I+ + Q+ Y +L K
Sbjct: 468 LQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEK 514
>UNIPROTKB|F1NLV5 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
OMA:CKWATME GeneTree:ENSGT00560000077077 EMBL:AADN02019534
EMBL:AADN02019532 EMBL:AADN02019533 IPI:IPI00588365
Ensembl:ENSGALT00000002034 ArrayExpress:F1NLV5 Uniprot:F1NLV5
Length = 2007
Score = 397 (144.8 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
Identities = 80/190 (42%), Positives = 122/190 (64%)
Query: 179 HVNVKMTNVTMVLRNIISHPYLIN-KPYRIVDGKKEMVCDEN-------IVSSSGKMIVL 230
H + N M LR +HPYLIN +I++ ++ E ++ ++GK++++
Sbjct: 526 HNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPEAPDFQLQAMIQAAGKLVLI 585
Query: 231 NQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQF-NG 289
++LL KL HK L+FS MV+ L+ +E+ + Y Y R+ G +R R A+ +F
Sbjct: 586 DKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKP 645
Query: 290 STEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLV 349
++ VFLL TRAGG G+NLTAADTCI++DSDWNPQ D+QA+ARCHRIGQ+K V +YRL+
Sbjct: 646 DSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLI 705
Query: 350 SHSTYQVHLF 359
+ ++Y+ +F
Sbjct: 706 TRNSYEREMF 715
Score = 102 (41.0 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+ +ILKP LRRLK DV NL PK+ T+I+ + Q+ Y +L K
Sbjct: 468 LQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEK 514
>UNIPROTKB|H3BTW3 [details] [associations]
symbol:CHD9 "Chromodomain-helicase-DNA-binding protein 9"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00384 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 EMBL:AC007906
EMBL:AC079416 HGNC:HGNC:25701 Ensembl:ENST00000565803 Bgee:H3BTW3
Uniprot:H3BTW3
Length = 1099
Score = 399 (145.5 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
Identities = 82/189 (43%), Positives = 122/189 (64%)
Query: 181 NV-KMTNVTMVLRNIISHPYLINKPYRIVDGK-----KEMVCD---ENIVSSSGKMIVLN 231
NV + N M LR +HPYLI + G+ D + ++ S+GK+++++
Sbjct: 655 NVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLID 714
Query: 232 QLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-S 290
+LL K+K HK L+FS MV+ L+ +E+ + + Y Y R+ G +R R A+ +F+
Sbjct: 715 KLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPD 774
Query: 291 TEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVS 350
++ VFLL TRAGG G+NLTAADTCI++DSDWNPQ D+QA+ARCHRIGQ K V +YRLV+
Sbjct: 775 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVT 834
Query: 351 HSTYQVHLF 359
++Y+ +F
Sbjct: 835 RNSYEREMF 843
Score = 92 (37.4 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 4 ILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
ILKP LRRLK DV L PK+ T+I+ + Q+ Y +L K
Sbjct: 599 ILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEK 642
Score = 39 (18.8 bits), Expect = 4.1e-37, Sum P(2) = 4.1e-37
Identities = 11/47 (23%), Positives = 23/47 (48%)
Query: 120 KTYDLTEIDRM-FDSMIERDDTSDTEVQVEDKIKVEPCENSSNAQDV 165
K + L + R F + +E + + V+V+ ++V CE+ + V
Sbjct: 273 KRFKLRQAQRAHFFADMEEEPFNPDYVEVDRVLEVSFCEDKDTGEPV 319
>UNIPROTKB|F1PTH3 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 OMA:CKWATME GeneTree:ENSGT00560000077077
EMBL:AAEX03013942 EMBL:AAEX03013943 Ensembl:ENSCAFT00000014716
Uniprot:F1PTH3
Length = 2715
Score = 400 (145.9 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
Identities = 82/190 (43%), Positives = 123/190 (64%)
Query: 179 HVNVKMTNVTMVLRNIISHPYLIN-KPYRIV-DGKKEMVCD------ENIVSSSGKMIVL 230
H + N M LR +HPYLIN +I+ D +K D + ++ ++GK++++
Sbjct: 729 HNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLI 788
Query: 231 NQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQF-NG 289
++LL KL HK L+FS MV+ L+ +E+ + Y Y R+ G +R R A+ +F
Sbjct: 789 DKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKP 848
Query: 290 STEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLV 349
++ VFLL TRAGG G+NLTAADTCI++DSDWNPQ D+QA+ARCHRIGQ+K V +YRL+
Sbjct: 849 DSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLI 908
Query: 350 SHSTYQVHLF 359
+ ++Y+ +F
Sbjct: 909 TRNSYEREMF 918
Score = 102 (41.0 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+ +ILKP LRRLK DV NL PK+ T+I+ + Q+ Y +L K
Sbjct: 671 LQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEK 717
>UNIPROTKB|J9P0F6 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 CTD:84181 KO:K14436 GeneTree:ENSGT00560000077077
EMBL:AAEX03013942 EMBL:AAEX03013943 RefSeq:XP_534421.3
Ensembl:ENSCAFT00000048852 GeneID:477230 KEGG:cfa:477230
Uniprot:J9P0F6
Length = 2715
Score = 400 (145.9 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
Identities = 82/190 (43%), Positives = 123/190 (64%)
Query: 179 HVNVKMTNVTMVLRNIISHPYLIN-KPYRIV-DGKKEMVCD------ENIVSSSGKMIVL 230
H + N M LR +HPYLIN +I+ D +K D + ++ ++GK++++
Sbjct: 729 HNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLI 788
Query: 231 NQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQF-NG 289
++LL KL HK L+FS MV+ L+ +E+ + Y Y R+ G +R R A+ +F
Sbjct: 789 DKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKP 848
Query: 290 STEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLV 349
++ VFLL TRAGG G+NLTAADTCI++DSDWNPQ D+QA+ARCHRIGQ+K V +YRL+
Sbjct: 849 DSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLI 908
Query: 350 SHSTYQVHLF 359
+ ++Y+ +F
Sbjct: 909 TRNSYEREMF 918
Score = 102 (41.0 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+ +ILKP LRRLK DV NL PK+ T+I+ + Q+ Y +L K
Sbjct: 671 LQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEK 717
>UNIPROTKB|Q8TD26 [details] [associations]
symbol:CHD6 "Chromodomain-helicase-DNA-binding protein 6"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0006338 "chromatin remodeling" evidence=NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0003682
"chromatin binding" evidence=NAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0007399 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 CleanEx:HS_CHD5 EMBL:AY034072
EMBL:AL121674 EMBL:AL031669 EMBL:AL031667 EMBL:BC021907
EMBL:BC039860 EMBL:BC040016 EMBL:AF525085 EMBL:AB037756
EMBL:AK026022 IPI:IPI00220289 IPI:IPI00395823 IPI:IPI00513717
RefSeq:NP_115597.3 UniGene:Hs.740645 UniGene:Hs.741381 PDB:2EPB
PDBsum:2EPB ProteinModelPortal:Q8TD26 SMR:Q8TD26 IntAct:Q8TD26
MINT:MINT-1197235 STRING:Q8TD26 PhosphoSite:Q8TD26 DMDM:296439466
PaxDb:Q8TD26 PRIDE:Q8TD26 Ensembl:ENST00000373222
Ensembl:ENST00000373233 Ensembl:ENST00000440647 GeneID:84181
KEGG:hsa:84181 UCSC:uc002xka.1 UCSC:uc002xkc.3 CTD:84181
GeneCards:GC20M040030 H-InvDB:HIX0015824 H-InvDB:HIX0027712
HGNC:HGNC:19057 neXtProt:NX_Q8TD26 PharmGKB:PA134974700
HOVERGEN:HBG081150 InParanoid:Q8TD26 KO:K14436 OMA:CKWATME
OrthoDB:EOG4NP72J PhylomeDB:Q8TD26 ChiTaRS:CHD6
EvolutionaryTrace:Q8TD26 GenomeRNAi:84181 NextBio:73559
ArrayExpress:Q8TD26 Bgee:Q8TD26 CleanEx:HS_CHD6
Genevestigator:Q8TD26 GermOnline:ENSG00000124177 Uniprot:Q8TD26
Length = 2715
Score = 400 (145.9 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
Identities = 82/190 (43%), Positives = 123/190 (64%)
Query: 179 HVNVKMTNVTMVLRNIISHPYLIN-KPYRIV-DGKKEMVCD------ENIVSSSGKMIVL 230
H + N M LR +HPYLIN +I+ D +K D + ++ ++GK++++
Sbjct: 729 HNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLI 788
Query: 231 NQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQF-NG 289
++LL KL HK L+FS MV+ L+ +E+ + Y Y R+ G +R R A+ +F
Sbjct: 789 DKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKP 848
Query: 290 STEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLV 349
++ VFLL TRAGG G+NLTAADTCI++DSDWNPQ D+QA+ARCHRIGQ+K V +YRL+
Sbjct: 849 DSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLI 908
Query: 350 SHSTYQVHLF 359
+ ++Y+ +F
Sbjct: 909 TRNSYEREMF 918
Score = 102 (41.0 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+ +ILKP LRRLK DV NL PK+ T+I+ + Q+ Y +L K
Sbjct: 671 LQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEK 717
>ZFIN|ZDB-GENE-021125-1 [details] [associations]
symbol:smarca5 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 5"
species:7955 "Danio rerio" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 ZFIN:ZDB-GENE-021125-1 GO:GO:0005524
GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0060041
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OMA:EDYCHWR HOVERGEN:HBG056329 EMBL:CU550733
IPI:IPI00619566 UniGene:Dr.76168 Ensembl:ENSDART00000123972
ArrayExpress:B8A552 Bgee:B8A552 Uniprot:B8A552
Length = 1035
Score = 385 (140.6 bits), Expect = 1.5e-42, Sum P(2) = 1.5e-42
Identities = 78/176 (44%), Positives = 115/176 (65%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTN 241
+++ NV M LR +HPYL + + D ++V +SGKM+VL++LL KLK+
Sbjct: 427 MRLLNVLMQLRKCCNHPYLFDG----AEPGPPYTTDLHLVVNSGKMVVLDKLLPKLKEQG 482
Query: 242 HKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLS 299
+ L+FS M +VL+ +E+ C+ NY Y RL G +EER ++ FN S+++ +F+LS
Sbjct: 483 SRVLIFSQMTRVLDILEDYCMWRNYGYCRLDGQTPHEERQISINAFNEPNSSKF-LFMLS 541
Query: 300 TRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
TRAGG G+NL AD I+YDSDWNPQVD+QA R HRIGQ K V ++R ++ +T +
Sbjct: 542 TRAGGLGINLATADVVIIYDSDWNPQVDLQAMDRAHRIGQKKQVRVFRFITDNTVE 597
Score = 104 (41.7 bits), Expect = 1.5e-42, Sum P(2) = 1.5e-42
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +L+PF LRR+K DV +L PKK I + Q YTK+L K I
Sbjct: 367 LHTVLRPFLLRRIKADVEKSLLPKKEIKIYVGLSKMQREWYTKILMKDI 415
>ZFIN|ZDB-GENE-030131-6320 [details] [associations]
symbol:chd8 "chromodomain helicase DNA binding
protein 8" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0071339 "MLL1 complex" evidence=ISS] [GO:0016055 "Wnt receptor
signaling pathway" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 SMART:SM00717 Pfam:PF00385
ZFIN:ZDB-GENE-030131-6320 GO:GO:0005524 GO:GO:0006355 GO:GO:0016055
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071339
InterPro:IPR023780 PROSITE:PS00598 EMBL:AL928674 IPI:IPI00919855
UniGene:Dr.81397 PRIDE:B0R0I6 HOVERGEN:HBG107676 OrthoDB:EOG4ZPDTC
Uniprot:B0R0I6
Length = 2511
Score = 400 (145.9 bits), Expect = 1.5e-42, Sum P(2) = 1.5e-42
Identities = 83/185 (44%), Positives = 124/185 (67%)
Query: 181 NV-KMTNVTMVLRNIISHPYLIN-KPYRIVDGKKE----MVCD---ENIVSSSGKMIVLN 231
NV + N M LR +HPYLI +IV +E + D + +V S+GK+++L+
Sbjct: 1117 NVPNLLNTMMELRKCCNHPYLITGAEEKIVSELREVYDPLAPDFHLQALVRSAGKLVLLD 1176
Query: 232 QLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-S 290
+LL +LK HK L+FS MV+ L+ +E+ + + Y Y R+ G +R R A+ +F+
Sbjct: 1177 KLLPRLKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPD 1236
Query: 291 TEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVS 350
++ VFLL TRAGG G+NLTAADTC+++DSDWNPQ D+QA+ARCHRIGQ+K V +YRL++
Sbjct: 1237 SDRFVFLLCTRAGGLGINLTAADTCVIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLIT 1296
Query: 351 HSTYQ 355
++Y+
Sbjct: 1297 RNSYE 1301
Score = 100 (40.3 bits), Expect = 1.5e-42, Sum P(2) = 1.5e-42
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+ +ILKP LRRLK DV NL PK+ T+I+ + Q+ Y +L +
Sbjct: 1057 LQSILKPMMLRRLKEDVEKNLAPKQETIIEVELTDVQKKYYRAILER 1103
>RGD|1311921 [details] [associations]
symbol:Chd7 "chromodomain helicase DNA binding protein 7"
species:10116 "Rattus norvegicus" [GO:0001501 "skeletal system
development" evidence=IEA;ISO] [GO:0001568 "blood vessel
development" evidence=ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003007 "heart morphogenesis"
evidence=IEA;ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0007417 "central
nervous system development" evidence=IEA;ISO] [GO:0007512 "adult
heart development" evidence=IEA;ISO] [GO:0007605 "sensory
perception of sound" evidence=IEA;ISO] [GO:0007626 "locomotory
behavior" evidence=ISO] [GO:0007628 "adult walking behavior"
evidence=IEA;ISO] [GO:0008015 "blood circulation" evidence=IEA;ISO]
[GO:0021545 "cranial nerve development" evidence=IEA;ISO]
[GO:0030217 "T cell differentiation" evidence=IEA;ISO] [GO:0030540
"female genitalia development" evidence=IEA;ISO] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=IEA;ISO] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA;ISO] [GO:0042471 "ear morphogenesis" evidence=ISO]
[GO:0042472 "inner ear morphogenesis" evidence=ISO] [GO:0043010
"camera-type eye development" evidence=ISO] [GO:0043584 "nose
development" evidence=IEA;ISO] [GO:0048752 "semicircular canal
morphogenesis" evidence=IEA;ISO] [GO:0048806 "genitalia
development" evidence=ISO] [GO:0048844 "artery morphogenesis"
evidence=IEA;ISO] [GO:0050890 "cognition" evidence=IEA;ISO]
[GO:0060021 "palate development" evidence=IEA;ISO] [GO:0060041
"retina development in camera-type eye" evidence=IEA;ISO]
[GO:0060123 "regulation of growth hormone secretion"
evidence=IEA;ISO] [GO:0060173 "limb development" evidence=ISO]
[GO:0060324 "face development" evidence=IEA;ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 SMART:SM00717 Pfam:PF00385 RGD:1311921 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0008015 GO:GO:0003007
GO:GO:0050890 GO:GO:0001701 GO:GO:0040018 GO:GO:0007417
GO:GO:0003682 GO:GO:0001501 GO:GO:0060041 GO:GO:0007605
GO:GO:0007512 GO:GO:0004386 GO:GO:0035116 GO:GO:0060324
GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0030540
GO:GO:0007628 GO:GO:0030217 GO:GO:0048752 InterPro:IPR023780
CTD:55636 KO:K14437 OrthoDB:EOG4MCWZD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 IPI:IPI00366595
RefSeq:XP_003749947.1 PRIDE:D3ZAP7 Ensembl:ENSRNOT00000008901
GeneID:312974 KEGG:rno:312974 UCSC:RGD:1311921 Uniprot:D3ZAP7
Length = 2985
Score = 403 (146.9 bits), Expect = 1.8e-42, Sum P(2) = 1.8e-42
Identities = 83/189 (43%), Positives = 126/189 (66%)
Query: 181 NV-KMTNVTMVLRNIISHPYLIN-KPYRIVDGKKEMV-CD------ENIVSSSGKMIVLN 231
NV + N M LR +HPYLIN +I++ K+ D + ++ ++GK+++++
Sbjct: 1226 NVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKDAHNADSPDFQLQAMIQAAGKLVLID 1285
Query: 232 QLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-S 290
+LL KLK H+ L+FS MV+ L+ +E+ + Y Y R+ G +R R A+ +F+
Sbjct: 1286 KLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPD 1345
Query: 291 TEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVS 350
++ VFLL TRAGG G+NLTAADTCI++DSDWNPQ D+QA+ARCHRIGQ+K V IYRL++
Sbjct: 1346 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLIT 1405
Query: 351 HSTYQVHLF 359
++Y+ +F
Sbjct: 1406 RNSYEREMF 1414
Score = 98 (39.6 bits), Expect = 1.8e-42, Sum P(2) = 1.8e-42
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 4 ILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
ILKP LRRLK DV NL PK+ T+I+ + Q+ Y +L K
Sbjct: 1170 ILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEK 1213
Score = 42 (19.8 bits), Expect = 1.4e-36, Sum P(2) = 1.4e-36
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 123 DLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEPCENSS--NAQDVPSAEEKNVDEIL 177
D E+DR+ D DD + K P E+S+ QD+ A+ + ++++
Sbjct: 869 DYVEVDRIMDFARSTDDRGEPVTHYLVKWCSLPYEDSTWELRQDLDQAKIEEFEKLM 925
>ZFIN|ZDB-GENE-070705-296 [details] [associations]
symbol:si:dkey-148b12.1 "si:dkey-148b12.1"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 ZFIN:ZDB-GENE-070705-296 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 HOVERGEN:HBG056329 KO:K11727 OrthoDB:EOG44J2H9
EMBL:CR848717 EMBL:CU104724 IPI:IPI00488326 RefSeq:NP_001093467.1
UniGene:Dr.81160 SMR:A5WUY4 Ensembl:ENSDART00000020725
GeneID:559803 KEGG:dre:559803 OMA:IGHAWIN NextBio:20883144
Uniprot:A5WUY4
Length = 1036
Score = 382 (139.5 bits), Expect = 2.0e-42, Sum P(2) = 2.0e-42
Identities = 75/176 (42%), Positives = 115/176 (65%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTN 241
+++ N+ M LR +HPYL + + D ++V +SGKM+ L++LL K+++
Sbjct: 406 MRLLNILMQLRKCCNHPYLFDG----AEPGPPYTTDTHLVINSGKMVALDKLLPKVQEQG 461
Query: 242 HKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG--STEWGVFLLS 299
+ L+FS M +VL+ +E+ C+ + Y RL G+ +E R A+ FN S+++ +F+LS
Sbjct: 462 SRVLIFSQMTRVLDILEDYCMWRGFEYCRLDGNTPHEAREQAIDAFNAPNSSKF-IFMLS 520
Query: 300 TRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
TRAGG G+NL AD ILYDSDWNPQVD+QA R HRIGQ KPV ++RL++ +T +
Sbjct: 521 TRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQRKPVKVFRLITDNTVE 576
Score = 106 (42.4 bits), Expect = 2.0e-42, Sum P(2) = 2.0e-42
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +L+PF LRR+K +V +LPPKK I + Q YT++L K I
Sbjct: 346 LHAVLRPFLLRRIKAEVEKSLPPKKEVKIYLGLSKMQREWYTRILMKDI 394
>GENEDB_PFALCIPARUM|PF11_0053 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:5833
"Plasmodium falciparum" [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 377 (137.8 bits), Expect = 2.9e-42, Sum P(2) = 2.9e-42
Identities = 82/190 (43%), Positives = 122/190 (64%)
Query: 171 KNVDEILHHVNVK--MTNVTMVLRNIISHPYLINKPYRIVDGKKE--MVCDENIVSSSGK 226
KN+D + K M N+ M LR +HPYL DG +E + +++ +SGK
Sbjct: 575 KNIDVLNAMTGSKNQMLNILMQLRKCCNHPYLF-------DGIEEPPYIEGNHLIETSGK 627
Query: 227 MIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQ 286
M +L++LL +LK+ N + L+FS M ++L+ I++ C +NY Y R+ GS +ER + Q
Sbjct: 628 MSLLDKLLPRLKKENSRVLLFSQMTRLLDIIDDYCRWKNYPYLRIDGSTPGDERQVRINQ 687
Query: 287 FNG-STEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCI 345
FN ++++ +FLLSTRAGG G+NLT AD IL+DSD+NPQ+DIQA R HRIGQ K V +
Sbjct: 688 FNEPNSKYFIFLLSTRAGGIGINLTTADIVILFDSDYNPQMDIQAMDRAHRIGQKKRVIV 747
Query: 346 YRLVSHSTYQ 355
YR V+ ++ +
Sbjct: 748 YRFVTQNSVE 757
Score = 114 (45.2 bits), Expect = 2.9e-42, Sum P(2) = 2.9e-42
Identities = 23/49 (46%), Positives = 32/49 (65%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H ILKPF LRRLK +V +LPPK+ I M Q+ +Y+ +L+K I
Sbjct: 529 LHTILKPFMLRRLKVEVEQSLPPKREIYIFVGMSKLQKKLYSDILSKNI 577
Score = 58 (25.5 bits), Expect = 2.2e-36, Sum P(2) = 2.2e-36
Identities = 20/82 (24%), Positives = 39/82 (47%)
Query: 101 TIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEPCENSS 160
T + N + + RK LN + + D D + R+ +DT V +DK K N
Sbjct: 74 TKEGNNMNENMMNRK--LNSSVEDGN-DNNHDKNVHRNIGNDTHVSYDDKRKSYLDNNEE 130
Query: 161 NAQDV-PSAEEKNVDEILHHVN 181
N++ + + +++ ++EI + N
Sbjct: 131 NSEQMNDNMKKRKLNEISYDNN 152
Score = 38 (18.4 bits), Expect = 2.8e-34, Sum P(2) = 2.8e-34
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 13 LKCDVNLNLPPKKTTVIDCP 32
L C + N KK ++I CP
Sbjct: 360 LLCYLRFNKNIKKKSIIICP 379
>UNIPROTKB|Q8IIW0 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:36329 "Plasmodium
falciparum 3D7" [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 377 (137.8 bits), Expect = 2.9e-42, Sum P(2) = 2.9e-42
Identities = 82/190 (43%), Positives = 122/190 (64%)
Query: 171 KNVDEILHHVNVK--MTNVTMVLRNIISHPYLINKPYRIVDGKKE--MVCDENIVSSSGK 226
KN+D + K M N+ M LR +HPYL DG +E + +++ +SGK
Sbjct: 575 KNIDVLNAMTGSKNQMLNILMQLRKCCNHPYLF-------DGIEEPPYIEGNHLIETSGK 627
Query: 227 MIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQ 286
M +L++LL +LK+ N + L+FS M ++L+ I++ C +NY Y R+ GS +ER + Q
Sbjct: 628 MSLLDKLLPRLKKENSRVLLFSQMTRLLDIIDDYCRWKNYPYLRIDGSTPGDERQVRINQ 687
Query: 287 FNG-STEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCI 345
FN ++++ +FLLSTRAGG G+NLT AD IL+DSD+NPQ+DIQA R HRIGQ K V +
Sbjct: 688 FNEPNSKYFIFLLSTRAGGIGINLTTADIVILFDSDYNPQMDIQAMDRAHRIGQKKRVIV 747
Query: 346 YRLVSHSTYQ 355
YR V+ ++ +
Sbjct: 748 YRFVTQNSVE 757
Score = 114 (45.2 bits), Expect = 2.9e-42, Sum P(2) = 2.9e-42
Identities = 23/49 (46%), Positives = 32/49 (65%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H ILKPF LRRLK +V +LPPK+ I M Q+ +Y+ +L+K I
Sbjct: 529 LHTILKPFMLRRLKVEVEQSLPPKREIYIFVGMSKLQKKLYSDILSKNI 577
Score = 58 (25.5 bits), Expect = 2.2e-36, Sum P(2) = 2.2e-36
Identities = 20/82 (24%), Positives = 39/82 (47%)
Query: 101 TIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEPCENSS 160
T + N + + RK LN + + D D + R+ +DT V +DK K N
Sbjct: 74 TKEGNNMNENMMNRK--LNSSVEDGN-DNNHDKNVHRNIGNDTHVSYDDKRKSYLDNNEE 130
Query: 161 NAQDV-PSAEEKNVDEILHHVN 181
N++ + + +++ ++EI + N
Sbjct: 131 NSEQMNDNMKKRKLNEISYDNN 152
Score = 38 (18.4 bits), Expect = 2.8e-34, Sum P(2) = 2.8e-34
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 13 LKCDVNLNLPPKKTTVIDCP 32
L C + N KK ++I CP
Sbjct: 360 LLCYLRFNKNIKKKSIIICP 379
>ZFIN|ZDB-GENE-030131-497 [details] [associations]
symbol:chd9 "chromodomain helicase DNA binding
protein 9" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 ZFIN:ZDB-GENE-030131-497
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 GeneTree:ENSGT00560000077077
EMBL:CR318585 EMBL:CU464124 EMBL:FP015866 IPI:IPI00972236
Ensembl:ENSDART00000027807 Bgee:E7F7W5 Uniprot:E7F7W5
Length = 2948
Score = 406 (148.0 bits), Expect = 3.7e-42, Sum P(2) = 3.7e-42
Identities = 83/189 (43%), Positives = 125/189 (66%)
Query: 181 NV-KMTNVTMVLRNIISHPYLIN-KPYRIVDGKKEM----VCD---ENIVSSSGKMIVLN 231
NV + N M LR +HPYLI +I++ KE+ D + ++ S+GK+++++
Sbjct: 1182 NVPNLLNTMMELRKCCNHPYLIKGAEEKIMEDFKEVYSPAAVDFHLQAMIQSAGKLVLID 1241
Query: 232 QLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-S 290
+LL K+K HK L+FS MV+ L+ +E+ + Y Y R+ G +R R A+ +F+
Sbjct: 1242 KLLPKMKAGGHKVLIFSQMVRCLDILEDYLIQRRYLYERIDGRVRGNLRQAAIDRFSKPD 1301
Query: 291 TEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVS 350
++ VFLL TRAGG G+NLTAADTCI++DSDWNPQ D+QA+ARCHRIGQ K V +YRL++
Sbjct: 1302 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLIT 1361
Query: 351 HSTYQVHLF 359
++Y+ +F
Sbjct: 1362 RNSYEREMF 1370
Score = 92 (37.4 bits), Expect = 3.7e-42, Sum P(2) = 3.7e-42
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 4 ILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
ILKP LRRLK DV L PK+ T+I+ + Q+ Y +L K
Sbjct: 1126 ILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEK 1169
Score = 48 (22.0 bits), Expect = 1.5e-37, Sum P(2) = 1.5e-37
Identities = 14/63 (22%), Positives = 33/63 (52%)
Query: 104 SNQLVQQPKRRKCSLNKTYDLTEIDRM-FDSMIERDDTSDTEVQVEDKIKVEPCENSSNA 162
+ Q +++ KR + + K + + + + F + IE D + V+V+ ++V CE+ +
Sbjct: 785 TEQQLEKDKRIQQKI-KRFKIKQAQKAHFFADIEEDPFNPDYVEVDRVLEVSYCEDKDSG 843
Query: 163 QDV 165
+ V
Sbjct: 844 EPV 846
>UNIPROTKB|F1N734 [details] [associations]
symbol:CHD6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR002464 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 OMA:CKWATME GeneTree:ENSGT00560000077077
EMBL:DAAA02036652 EMBL:DAAA02036653 EMBL:DAAA02036654
EMBL:DAAA02036655 IPI:IPI00924240 Ensembl:ENSBTAT00000061177
ArrayExpress:F1N734 Uniprot:F1N734
Length = 2720
Score = 395 (144.1 bits), Expect = 3.9e-42, Sum P(2) = 3.9e-42
Identities = 81/190 (42%), Positives = 123/190 (64%)
Query: 179 HVNVKMTNVTMVLRNIISHPYLIN-KPYRIV-DGKKEMVCD------ENIVSSSGKMIVL 230
H + N M LR +HPYLI+ +I+ D +K D + ++ ++GK++++
Sbjct: 728 HNMPNLINTMMELRKCCNHPYLISGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLI 787
Query: 231 NQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQF-NG 289
++LL KL HK L+FS MV+ L+ +E+ + Y Y R+ G +R R A+ +F
Sbjct: 788 DKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKP 847
Query: 290 STEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLV 349
++ VFLL TRAGG G+NLTAADTCI++DSDWNPQ D+QA+ARCHRIGQ+K V +YRL+
Sbjct: 848 DSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLI 907
Query: 350 SHSTYQVHLF 359
+ ++Y+ +F
Sbjct: 908 TRNSYEREMF 917
Score = 102 (41.0 bits), Expect = 3.9e-42, Sum P(2) = 3.9e-42
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+ +ILKP LRRLK DV NL PK+ T+I+ + Q+ Y +L K
Sbjct: 670 LQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEK 716
>TAIR|locus:2173644 [details] [associations]
symbol:CHR1 "chromatin remodeling 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006349
"regulation of gene expression by genetic imprinting" evidence=IMP]
[GO:0044030 "regulation of DNA methylation" evidence=IMP]
[GO:0051574 "positive regulation of histone H3-K9 methylation"
evidence=IMP] [GO:0000786 "nucleosome" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IMP] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0090241 "negative regulation of
histone H4 acetylation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006344 "maintenance of chromatin silencing"
evidence=IMP] [GO:0009294 "DNA mediated transformation"
evidence=IMP] [GO:0032197 "transposition, RNA-mediated"
evidence=IMP] [GO:0006342 "chromatin silencing" evidence=RCA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IMP;RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0016246 "RNA interference" evidence=RCA] [GO:0016572 "histone
phosphorylation" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0004003 GO:GO:0006349 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009294
EMBL:AB018119 GO:GO:0000786 GO:GO:0051574 GO:GO:0044030
GO:GO:0090241 GO:GO:0032197 EMBL:AF143940 EMBL:AY099638
EMBL:BT002161 EMBL:AY699010 EMBL:AY699011 IPI:IPI00524705
RefSeq:NP_201476.1 UniGene:At.28851 ProteinModelPortal:Q9XFH4
SMR:Q9XFH4 STRING:Q9XFH4 PaxDb:Q9XFH4 PRIDE:Q9XFH4
EnsemblPlants:AT5G66750.1 GeneID:836808 KEGG:ath:AT5G66750
TAIR:At5g66750 HOGENOM:HOG000172362 InParanoid:Q9XFH4 OMA:ETFYTAI
PhylomeDB:Q9XFH4 ProtClustDB:CLSN2686877 Genevestigator:Q9XFH4
GO:GO:0006344 GO:GO:0006346 Uniprot:Q9XFH4
Length = 764
Score = 370 (135.3 bits), Expect = 4.5e-42, Sum P(2) = 4.5e-42
Identities = 77/167 (46%), Positives = 106/167 (63%)
Query: 183 KMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNH 242
K+ N+ + LR +HP L+ +DG E IV GK +L +LL +L NH
Sbjct: 485 KLNNLVIQLRKNCNHPDLLQGQ---IDGSYLYPPVEEIVGQCGKFRLLERLLVRLFANNH 541
Query: 243 KTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGS-TEWGVFLLSTR 301
K L+FS K+L+ ++ + + R+ GS++ +ER ++ F+ + +FLLSTR
Sbjct: 542 KVLIFSQWTKLLDIMDYYFSEKGFEVCRIDGSVKLDERRRQIKDFSDEKSSCSIFLLSTR 601
Query: 302 AGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRL 348
AGG G+NLTAADTCILYDSDWNPQ+D+QA RCHRIGQTKPV +YRL
Sbjct: 602 AGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRL 648
Score = 109 (43.4 bits), Expect = 4.5e-42, Sum P(2) = 4.5e-42
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI----GEN 52
+H IL+PF LRR+KCDV L+LP KK ++ M Q+ ++ T+ GEN
Sbjct: 420 LHGILRPFILRRMKCDVELSLPRKKEIIMYATMTDHQKKFQEHLVNNTLEAHLGEN 475
>RGD|1594200 [details] [associations]
symbol:LOC680231 "similar to chromodomain helicase DNA binding
protein 9" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 RGD:1594200 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 OrthoDB:EOG4548XQ IPI:IPI00957597
Ensembl:ENSRNOT00000018201 Uniprot:D3ZVE2
Length = 2881
Score = 401 (146.2 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
Identities = 83/189 (43%), Positives = 123/189 (65%)
Query: 181 NV-KMTNVTMVLRNIISHPYLIN-KPYRIV----DGKKEMVCD---ENIVSSSGKMIVLN 231
NV + N M LR +HPYLI +I+ D D + ++ S+GK+++++
Sbjct: 1128 NVPNLVNTMMELRKCCNHPYLIKGAEEKIIGEFRDTYNPSASDFHLQAMIQSAGKLVLID 1187
Query: 232 QLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-S 290
+LL K+K HK L+FS MV+ L+ +E+ + + Y Y R+ G +R R A+ +F+
Sbjct: 1188 KLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPD 1247
Query: 291 TEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVS 350
++ VFLL TRAGG G+NLTAADTCI++DSDWNPQ D+QA+ARCHRIGQ K V +YRLV+
Sbjct: 1248 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVT 1307
Query: 351 HSTYQVHLF 359
++Y+ +F
Sbjct: 1308 RNSYEREMF 1316
Score = 92 (37.4 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 4 ILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
ILKP LRRLK DV L PK+ T+I+ + Q+ Y +L K
Sbjct: 1072 ILKPMMLRRLKEDVEKRLAPKEETIIEVELTNIQKKYYRAILEK 1115
Score = 48 (22.0 bits), Expect = 4.9e-37, Sum P(2) = 4.9e-37
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 126 EIDRMFDS--MIERDDTSDTEVQVEDKIKVEPCENSSNAQDVPS 167
++DR F S M D + T++Q + + P NS Q VPS
Sbjct: 433 DLDRQFTSHLMARPSDMAQTQLQYQARGWPSPLPNSH--QHVPS 474
>WB|WBGene00002169 [details] [associations]
symbol:isw-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0040026 "positive regulation of vulval development"
evidence=IGI] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0016246 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0000790 GO:GO:0040035 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 GO:GO:0040027 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GO:GO:0040026 EMBL:FO081312 PIR:S44645
RefSeq:NP_498468.2 ProteinModelPortal:P41877 SMR:P41877
STRING:P41877 PaxDb:P41877 EnsemblMetazoa:F37A4.8 GeneID:175944
KEGG:cel:CELE_F37A4.8 UCSC:F37A4.8 CTD:175944 WormBase:F37A4.8
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 InParanoid:P41877
KO:K11654 OMA:MQRKWYK NextBio:890418 SUPFAM:SSF101224
Uniprot:P41877
Length = 1009
Score = 377 (137.8 bits), Expect = 1.3e-41, Sum P(2) = 1.3e-41
Identities = 71/172 (41%), Positives = 114/172 (66%)
Query: 183 KMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNH 242
++ N+ M LR ++HPYL + + D+++V +SGKM+VL++LL K K+
Sbjct: 397 RLMNILMHLRKCVNHPYLFDG----AEPGPPFTTDQHLVDNSGKMVVLDKLLMKFKEQGS 452
Query: 243 KTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-STEWGVFLLSTR 301
+ L+FS ++L+ +E+ C +Y Y RL GS +E+R++A++ +N ++ +F+L+TR
Sbjct: 453 RVLIFSQFSRMLDLLEDFCWWRHYEYCRLDGSTPHEDRSNAIEAYNAPDSKKFIFMLTTR 512
Query: 302 AGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHST 353
AGG G+NL AD I+YDSDWNPQ D+QA R HRIGQ K V ++RL++ +T
Sbjct: 513 AGGLGINLATADVVIIYDSDWNPQSDLQAMDRAHRIGQKKQVRVFRLITENT 564
Score = 103 (41.3 bits), Expect = 1.3e-41, Sum P(2) = 1.3e-41
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +L+PF LRR+K DV +L PKK + + Q YTKVL K I
Sbjct: 336 LHKVLQPFLLRRIKSDVEKSLLPKKEVKVYVGLSKMQREWYTKVLMKDI 384
>MGI|MGI:1924001 [details] [associations]
symbol:Chd9 "chromodomain helicase DNA binding protein 9"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00592
MGI:MGI:1924001 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 PROSITE:PS00598 HOVERGEN:HBG081150
HOGENOM:HOG000246942 GeneTree:ENSGT00560000077077 CTD:80205
KO:K14438 OMA:MWGHQTA EMBL:DQ127229 EMBL:AK034446 EMBL:AK039562
EMBL:AK084000 EMBL:AB093226 EMBL:BC052896 IPI:IPI00229650
IPI:IPI00758139 RefSeq:NP_796198.1 UniGene:Mm.100615
ProteinModelPortal:Q8BYH8 SMR:Q8BYH8 STRING:Q8BYH8
PhosphoSite:Q8BYH8 PaxDb:Q8BYH8 PRIDE:Q8BYH8
Ensembl:ENSMUST00000048665 Ensembl:ENSMUST00000109614 GeneID:109151
KEGG:mmu:109151 UCSC:uc009msf.2 UCSC:uc009msi.2 InParanoid:Q8BYH8
OrthoDB:EOG4548XQ ChiTaRS:CHD9 NextBio:361700 Bgee:Q8BYH8
CleanEx:MM_CHD9 Genevestigator:Q8BYH8 Uniprot:Q8BYH8
Length = 2885
Score = 399 (145.5 bits), Expect = 1.9e-41, Sum P(2) = 1.9e-41
Identities = 82/189 (43%), Positives = 122/189 (64%)
Query: 181 NV-KMTNVTMVLRNIISHPYLINKPYRIVDGK-----KEMVCD---ENIVSSSGKMIVLN 231
NV + N M LR +HPYLI + G+ D + ++ S+GK+++++
Sbjct: 1128 NVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPSASDFHLQAMIQSAGKLVLID 1187
Query: 232 QLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-S 290
+LL K+K HK L+FS MV+ L+ +E+ + + Y Y R+ G +R R A+ +F+
Sbjct: 1188 KLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPD 1247
Query: 291 TEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVS 350
++ VFLL TRAGG G+NLTAADTCI++DSDWNPQ D+QA+ARCHRIGQ K V +YRLV+
Sbjct: 1248 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVT 1307
Query: 351 HSTYQVHLF 359
++Y+ +F
Sbjct: 1308 RNSYEREMF 1316
Score = 92 (37.4 bits), Expect = 1.9e-41, Sum P(2) = 1.9e-41
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 4 ILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
ILKP LRRLK DV L PK+ T+I+ + Q+ Y +L K
Sbjct: 1072 ILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEK 1115
Score = 38 (18.4 bits), Expect = 8.9e-36, Sum P(2) = 8.9e-36
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 126 EIDRMFDS-MIER-DDTSDTEVQVEDKIKVEPCENSSNAQDVPS 167
++DR F S ++ R D + T++Q + + P S+N Q + S
Sbjct: 433 DLDRQFTSHLVSRPSDMAQTQLQYQARGWPSPL--STNHQHLHS 474
>UNIPROTKB|Q3L8U1 [details] [associations]
symbol:CHD9 "Chromodomain-helicase-DNA-binding protein 9"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0044255 "cellular lipid metabolic
process" evidence=TAS] [GO:0044281 "small molecule metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_111217 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005654 GO:GO:0006355 GO:GO:0044281
GO:GO:0003677 GO:GO:0044255 GO:GO:0006351 GO:GO:0016568
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOVERGEN:HBG081150 EMBL:AY243500 EMBL:DQ333316
EMBL:AY647157 EMBL:AC007906 EMBL:AC079416 EMBL:BC140815
EMBL:AB002306 EMBL:AF150735 EMBL:AK022582 IPI:IPI00383105
IPI:IPI00746795 IPI:IPI00914955 RefSeq:NP_079410.4 UniGene:Hs.59159
UniGene:Hs.622347 ProteinModelPortal:Q3L8U1 SMR:Q3L8U1
IntAct:Q3L8U1 STRING:Q3L8U1 PhosphoSite:Q3L8U1 DMDM:215273951
PaxDb:Q3L8U1 PRIDE:Q3L8U1 Ensembl:ENST00000398510
Ensembl:ENST00000447540 Ensembl:ENST00000564845
Ensembl:ENST00000566029 GeneID:80205 KEGG:hsa:80205 UCSC:uc002egy.3
UCSC:uc002ehb.3 UCSC:uc002ehc.3 CTD:80205 GeneCards:GC16P053041
HGNC:HGNC:25701 neXtProt:NX_Q3L8U1 PharmGKB:PA128394727
InParanoid:Q3L8U1 KO:K14438 OMA:MWGHQTA GenomeRNAi:80205
NextBio:70576 ArrayExpress:Q3L8U1 Bgee:Q3L8U1 CleanEx:HS_CHD9
Genevestigator:Q3L8U1 GermOnline:ENSG00000177200 Uniprot:Q3L8U1
Length = 2897
Score = 399 (145.5 bits), Expect = 1.9e-41, Sum P(2) = 1.9e-41
Identities = 82/189 (43%), Positives = 122/189 (64%)
Query: 181 NV-KMTNVTMVLRNIISHPYLINKPYRIVDGK-----KEMVCD---ENIVSSSGKMIVLN 231
NV + N M LR +HPYLI + G+ D + ++ S+GK+++++
Sbjct: 1129 NVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLID 1188
Query: 232 QLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-S 290
+LL K+K HK L+FS MV+ L+ +E+ + + Y Y R+ G +R R A+ +F+
Sbjct: 1189 KLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPD 1248
Query: 291 TEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVS 350
++ VFLL TRAGG G+NLTAADTCI++DSDWNPQ D+QA+ARCHRIGQ K V +YRLV+
Sbjct: 1249 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVT 1308
Query: 351 HSTYQVHLF 359
++Y+ +F
Sbjct: 1309 RNSYEREMF 1317
Score = 92 (37.4 bits), Expect = 1.9e-41, Sum P(2) = 1.9e-41
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 4 ILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
ILKP LRRLK DV L PK+ T+I+ + Q+ Y +L K
Sbjct: 1073 ILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEK 1116
Score = 39 (18.8 bits), Expect = 7.0e-36, Sum P(2) = 7.0e-36
Identities = 11/47 (23%), Positives = 23/47 (48%)
Query: 120 KTYDLTEIDRM-FDSMIERDDTSDTEVQVEDKIKVEPCENSSNAQDV 165
K + L + R F + +E + + V+V+ ++V CE+ + V
Sbjct: 747 KRFKLRQAQRAHFFADMEEEPFNPDYVEVDRVLEVSFCEDKDTGEPV 793
>UNIPROTKB|E1BDZ3 [details] [associations]
symbol:CHD9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:MWGHQTA EMBL:DAAA02046444
IPI:IPI00705152 Ensembl:ENSBTAT00000002955 Uniprot:E1BDZ3
Length = 2900
Score = 399 (145.5 bits), Expect = 1.9e-41, Sum P(2) = 1.9e-41
Identities = 82/189 (43%), Positives = 122/189 (64%)
Query: 181 NV-KMTNVTMVLRNIISHPYLINKPYRIVDGK-----KEMVCD---ENIVSSSGKMIVLN 231
NV + N M LR +HPYLI + G+ D + ++ S+GK+++++
Sbjct: 1130 NVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLID 1189
Query: 232 QLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-S 290
+LL K+K HK L+FS MV+ L+ +E+ + + Y Y R+ G +R R A+ +F+
Sbjct: 1190 KLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPD 1249
Query: 291 TEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVS 350
++ VFLL TRAGG G+NLTAADTCI++DSDWNPQ D+QA+ARCHRIGQ K V +YRLV+
Sbjct: 1250 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVT 1309
Query: 351 HSTYQVHLF 359
++Y+ +F
Sbjct: 1310 RNSYEREMF 1318
Score = 92 (37.4 bits), Expect = 1.9e-41, Sum P(2) = 1.9e-41
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 4 ILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
ILKP LRRLK DV L PK+ T+I+ + Q+ Y +L K
Sbjct: 1074 ILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEK 1117
Score = 40 (19.1 bits), Expect = 5.5e-36, Sum P(2) = 5.5e-36
Identities = 14/63 (22%), Positives = 31/63 (49%)
Query: 104 SNQLVQQPKRRKCSLNKTYDLTEIDRM-FDSMIERDDTSDTEVQVEDKIKVEPCENSSNA 162
+ Q + + KR + + K + L + R F + +E + + V+V+ ++V CE+
Sbjct: 733 TEQQLLKDKRIQQKI-KRFKLRQAQRAHFFADMEEEPFNPDYVEVDRVLEVSFCEDKDTG 791
Query: 163 QDV 165
+ V
Sbjct: 792 EPV 794
>UNIPROTKB|E2RDK8 [details] [associations]
symbol:CHD9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:MWGHQTA EMBL:AAEX03001603
EMBL:AAEX03001604 EMBL:AAEX03001605 Ensembl:ENSCAFT00000015413
Uniprot:E2RDK8
Length = 2902
Score = 399 (145.5 bits), Expect = 1.9e-41, Sum P(2) = 1.9e-41
Identities = 82/189 (43%), Positives = 122/189 (64%)
Query: 181 NV-KMTNVTMVLRNIISHPYLINKPYRIVDGK-----KEMVCD---ENIVSSSGKMIVLN 231
NV + N M LR +HPYLI + G+ D + ++ S+GK+++++
Sbjct: 1131 NVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFRDTYNPAASDFHLQAMIQSAGKLVLID 1190
Query: 232 QLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-S 290
+LL K+K HK L+FS MV+ L+ +E+ + + Y Y R+ G +R R A+ +F+
Sbjct: 1191 KLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPD 1250
Query: 291 TEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVS 350
++ VFLL TRAGG G+NLTAADTCI++DSDWNPQ D+QA+ARCHRIGQ K V +YRLV+
Sbjct: 1251 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLVT 1310
Query: 351 HSTYQVHLF 359
++Y+ +F
Sbjct: 1311 RNSYEREMF 1319
Score = 92 (37.4 bits), Expect = 1.9e-41, Sum P(2) = 1.9e-41
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 4 ILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
ILKP LRRLK DV L PK+ T+I+ + Q+ Y +L K
Sbjct: 1075 ILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEK 1118
>TAIR|locus:2182978 [details] [associations]
symbol:CHR17 "chromatin remodeling factor17" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] [GO:0000226 "microtubule
cytoskeleton organization" evidence=RCA] [GO:0000911 "cytokinesis
by cell plate formation" evidence=RCA] [GO:0006259 "DNA metabolic
process" evidence=RCA] [GO:0006261 "DNA-dependent DNA replication"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007126 "meiosis" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=RCA] [GO:0010413 "glucuronoxylan metabolic
process" evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016572 "histone phosphorylation" evidence=RCA] [GO:0031047
"gene silencing by RNA" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0045492 "xylan
biosynthetic process" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=IGI] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CP002688 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 GO:GO:0010228 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 KO:K11654 OMA:MQRKWYK SUPFAM:SSF101224
IPI:IPI00547773 RefSeq:NP_850847.1 UniGene:At.19176
ProteinModelPortal:F4JY25 SMR:F4JY25 IntAct:F4JY25 PRIDE:F4JY25
EnsemblPlants:AT5G18620.2 GeneID:831980 KEGG:ath:AT5G18620
PhylomeDB:F4JY25 Uniprot:F4JY25
Length = 1072
Score = 364 (133.2 bits), Expect = 2.8e-41, Sum P(2) = 2.8e-41
Identities = 71/175 (40%), Positives = 115/175 (65%)
Query: 183 KMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNH 242
++ N+ M LR +HPYL ++ + +++V+++GKM++L++LL KLK +
Sbjct: 457 RLLNIAMQLRKCCNHPYL----FQGAEPGPPYTTGDHLVTNAGKMVLLDKLLPKLKDRDS 512
Query: 243 KTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLST 300
+ L+FS M ++L+ +E+ + Y Y R+ G+ +ER+ +++ +N GS ++ VFLLST
Sbjct: 513 RVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDERDASIEAYNKPGSEKF-VFLLST 571
Query: 301 RAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
RAGG G+NL AD ILYDSDWNPQVD+QA+ R HRIGQ K V ++R + + +
Sbjct: 572 RAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTENAIE 626
Score = 114 (45.2 bits), Expect = 2.8e-41, Sum P(2) = 2.8e-41
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +L+PF LRRLK DV LPPKK T++ M Q+ Y +L K +
Sbjct: 398 LHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDL 446
>UNIPROTKB|Q9NW36 [details] [associations]
symbol:HELLS "cDNA FLJ10339 fis, clone NT2RM2000740, weakly
similar to POSSIBLE GLOBAL TRANSCRIPTION ACTIVATOR SNF2L"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0004386 EMBL:AL138759 UniGene:Hs.655830
HGNC:HGNC:4861 ChiTaRS:HELLS EMBL:AK001201 IPI:IPI00012073
SMR:Q9NW36 STRING:Q9NW36 Ensembl:ENST00000371327
HOGENOM:HOG000198825 HOVERGEN:HBG072129 Uniprot:Q9NW36
Length = 310
Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
Identities = 84/165 (50%), Positives = 116/165 (70%)
Query: 189 MVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFS 248
M+LR +HPYLI P V +E DE +V++SGK ++L+++L +LK+ HK L+FS
Sbjct: 2 MLLRKCCNHPYLIEYPIDPVT--QEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFS 59
Query: 249 TMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLN 308
M +L+ + + C L ++N+ RL GS+ ER + FN E +FL+STRAGG G+N
Sbjct: 60 QMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGIN 119
Query: 309 LTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHST 353
LTAADT I+YDSDWNPQ D+QA+ RCHRIGQTKPV +YRLV+ +T
Sbjct: 120 LTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANT 164
>FB|FBgn0086902 [details] [associations]
symbol:kis "kismet" species:7227 "Drosophila melanogaster"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS;IDA] [GO:0007379 "segment
specification" evidence=IMP] [GO:0007350 "blastoderm segmentation"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0019730 "antimicrobial humoral
response" evidence=IMP] [GO:0007298 "border follicle cell
migration" evidence=IMP] [GO:0005875 "microtubule associated
complex" evidence=IDA] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0016322 "neuron remodeling" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0007614 "short-term memory"
evidence=IMP] [GO:0046622 "positive regulation of organ growth"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0007476 "imaginal disc-derived
wing morphogenesis" evidence=IMP] [GO:0007031 "peroxisome
organization" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0007411 GO:GO:0045892 GO:GO:0005875
EMBL:AE014134 GO:GO:0003677 GO:GO:0006200 GO:GO:0016322
GO:GO:0007031 GO:GO:0016887 GO:GO:0007298 GO:GO:0007614
GO:GO:0004386 GO:GO:0007379 GO:GO:0046622 GO:GO:0007476
GO:GO:0019730 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0007350 InterPro:IPR023780
KO:K14437 GeneTree:ENSGT00560000077077 RefSeq:NP_001137761.1
UniGene:Dm.3182 ProteinModelPortal:B7Z002 SMR:B7Z002 STRING:B7Z002
EnsemblMetazoa:FBtr0299837 GeneID:33185 KEGG:dme:Dmel_CG3696
CTD:33185 FlyBase:FBgn0086902 OMA:TTFEMIV OrthoDB:EOG4BZKHC
PhylomeDB:B7Z002 GenomeRNAi:33185 NextBio:782323 Bgee:B7Z002
Uniprot:B7Z002
Length = 5517
Score = 405 (147.6 bits), Expect = 6.6e-41, Sum P(2) = 6.6e-41
Identities = 85/185 (45%), Positives = 121/185 (65%)
Query: 184 MTNVTMVLRNIISHPYLINKPYRIV--DGKKEMVCD-----ENIVSSSGKMIVLNQLLHK 236
+ N M LR HPYL+N + D K + D +N++ S+GKM+++++LL K
Sbjct: 2302 LMNTMMELRKCCIHPYLLNGAEEQIQYDFKSQHGEDPESYYKNLILSAGKMVLIDKLLPK 2361
Query: 237 LKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWG 294
LK H+ L+FS MV+ L+ +E+ V Y + R+ G IR R +A+ +++ GS +
Sbjct: 2362 LKANGHRVLIFSQMVRCLDILEDYLVYRKYPFERIDGRIRGNLRQEAIDRYSKPGSDRF- 2420
Query: 295 VFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTY 354
VFLL T+AGG G+NLTAADT I+YDSDWNPQ D+QA+ARCHRIGQ K V IYRL+ +TY
Sbjct: 2421 VFLLCTKAGGLGINLTAADTVIIYDSDWNPQNDLQAQARCHRIGQRKMVKIYRLLCRNTY 2480
Query: 355 QVHLF 359
+ +F
Sbjct: 2481 EREMF 2485
Score = 87 (35.7 bits), Expect = 6.6e-41, Sum P(2) = 6.6e-41
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 4 ILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVL 45
+LKP LRRLK DV +L PK+ T+I+ + Q+ Y +L
Sbjct: 2242 LLKPMMLRRLKDDVEKSLAPKEETIIEVELTNIQKKYYRGIL 2283
Score = 66 (28.3 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
Identities = 25/97 (25%), Positives = 49/97 (50%)
Query: 92 SVKAGKREQTIDS-NQLVQQPKR--RKCSLNK-TYDLTEIDRMFDSMIE-RDDTSDTE-- 144
+++ GKRE +D + +PK+ K L++ T D E D F + E + D +D+E
Sbjct: 1652 AMRMGKRELILDKPKEKAPEPKQDEEKSELDEATTDKPEGDEKFKTEGESKKDLTDSEET 1711
Query: 145 ------VQVEDKIKVEPCENSSNAQDVPSAEEKNVDE 175
++V+ K + EP ++ + +D ++ VD+
Sbjct: 1712 KLESSAMEVDSKEESEPDDSKKSDEDNKDKDKMEVDD 1748
Score = 64 (27.6 bits), Expect = 1.7e-38, Sum P(2) = 1.7e-38
Identities = 26/81 (32%), Positives = 35/81 (43%)
Query: 80 WFSEESTLSNASSVKAG-KREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERD 138
W +EE L V A +R Q S QL N+ D TE+DR+ D + D
Sbjct: 1896 WRTEEELLKGDRRVAAKIRRFQQKQSQQLNIFENIEDEPFNQ--DFTEVDRVLDMSVHTD 1953
Query: 139 DTS-DTEVQVEDKIKVEPCEN 158
+TS +T K K P E+
Sbjct: 1954 ETSGETTKHYLVKWKSLPYED 1974
Score = 45 (20.9 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 126 EIDRMFDSMIERDDT--SDTEVQVEDKIKVEPCENSSNAQDVPSAEEKNV 173
E+D +S E DD+ SD + + +DK++V+ S+ + P + + V
Sbjct: 1719 EVDSKEES--EPDDSKKSDEDNKDKDKMEVDDEVGKSDKESKPEEQSETV 1766
>UNIPROTKB|F1RT88 [details] [associations]
symbol:CHD7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0060324 "face development" evidence=IEA] [GO:0060123
"regulation of growth hormone secretion" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IEA] [GO:0060021
"palate development" evidence=IEA] [GO:0050890 "cognition"
evidence=IEA] [GO:0048844 "artery morphogenesis" evidence=IEA]
[GO:0048752 "semicircular canal morphogenesis" evidence=IEA]
[GO:0043584 "nose development" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030540 "female genitalia development" evidence=IEA]
[GO:0030217 "T cell differentiation" evidence=IEA] [GO:0021545
"cranial nerve development" evidence=IEA] [GO:0008015 "blood
circulation" evidence=IEA] [GO:0007628 "adult walking behavior"
evidence=IEA] [GO:0007605 "sensory perception of sound"
evidence=IEA] [GO:0007512 "adult heart development" evidence=IEA]
[GO:0007417 "central nervous system development" evidence=IEA]
[GO:0003007 "heart morphogenesis" evidence=IEA] [GO:0001701 "in
utero embryonic development" evidence=IEA] [GO:0001501 "skeletal
system development" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271
Pfam:PF07533 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SMART:SM00592 SMART:SM00717 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0008015
GO:GO:0003007 GO:GO:0050890 GO:GO:0001701 GO:GO:0040018
GO:GO:0007417 GO:GO:0003682 GO:GO:0001501 GO:GO:0060041
GO:GO:0007605 GO:GO:0007512 GO:GO:0004386 GO:GO:0035116
GO:GO:0060324 GO:GO:0060021 GO:GO:0048844 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0030540 GO:GO:0007628 GO:GO:0030217 GO:GO:0048752
InterPro:IPR023780 OMA:TFGVIFD GO:GO:0021545 GO:GO:0043584
GO:GO:0060123 GeneTree:ENSGT00560000077077 EMBL:CU179734
Ensembl:ENSSSCT00000006828 Uniprot:F1RT88
Length = 2991
Score = 387 (141.3 bits), Expect = 9.0e-41, Sum P(2) = 9.0e-41
Identities = 82/191 (42%), Positives = 125/191 (65%)
Query: 181 NV-KMTNVTMVLRNIISHPYLIN-KPYRIVDGKKEMV-CD------ENIVSSSGKMIVLN 231
NV + N M LR +HPYLIN +I++ KE D + ++ ++GK+++++
Sbjct: 1230 NVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNADSPDFQLQAMIQAAGKLVLID 1289
Query: 232 QLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-S 290
+LL KLK H+ L+FS MV+ L+ +E+ + Y Y R+ G +R R A+ +F+
Sbjct: 1290 KLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRFSKPD 1349
Query: 291 TEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQV--DIQAEARCHRIGQTKPVCIYRL 348
++ VFLL TRAGG G+NLTAADTCI++DSDWNP++ QA+ARCHRIGQ+K V IYRL
Sbjct: 1350 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPKMISSFQAQARCHRIGQSKSVKIYRL 1409
Query: 349 VSHSTYQVHLF 359
++ ++Y+ +F
Sbjct: 1410 ITRNSYEREMF 1420
Score = 98 (39.6 bits), Expect = 9.0e-41, Sum P(2) = 9.0e-41
Identities = 21/44 (47%), Positives = 27/44 (61%)
Query: 4 ILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
ILKP LRRLK DV NL PK+ T+I+ + Q+ Y +L K
Sbjct: 1174 ILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEK 1217
Score = 44 (20.5 bits), Expect = 4.2e-35, Sum P(2) = 4.2e-35
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 123 DLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEPCENSS--NAQDVPSAEEKNVDEIL 177
D E+DR+ D DD + K P E+S+ QD+ A+ + ++++
Sbjct: 873 DYVEVDRIMDFARSTDDRGEPVTHYLVKWCSLPYEDSTWELRQDIDQAKIEEFEKLM 929
>UNIPROTKB|E1BS48 [details] [associations]
symbol:CHD9 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:MWGHQTA EMBL:AADN02038292
EMBL:AADN02038293 EMBL:AADN02038294 EMBL:AADN02038295
EMBL:AADN02038296 EMBL:AADN02038297 EMBL:AADN02038298
IPI:IPI00579055 Ensembl:ENSGALT00000005902 Uniprot:E1BS48
Length = 2614
Score = 391 (142.7 bits), Expect = 1.0e-40, Sum P(2) = 1.0e-40
Identities = 83/190 (43%), Positives = 124/190 (65%)
Query: 181 NV-KMTNVTMVLRNIISHPYLINKPYRIVDGK-KEM----VCD---ENIVSSSGKMIVLN 231
NV + N M LR +HPYLI + G+ KE D + ++ S+GK+++++
Sbjct: 1126 NVPNLVNTMMELRKCCNHPYLIKGAEEKILGEFKETYNPTAPDFHLQAMIQSAGKLVLID 1185
Query: 232 QLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-S 290
+LL K+K HK L+FS MV+ L+ +E+ + + Y Y R+ G +R R A+ +F+
Sbjct: 1186 KLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPD 1245
Query: 291 TEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQ-AEARCHRIGQTKPVCIYRLV 349
++ VFLL TRAGG G+NLTAADTCI++DSDWNPQ D+Q A+ARCHRIGQ K V +YRL+
Sbjct: 1246 SDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQKAQARCHRIGQNKAVKVYRLI 1305
Query: 350 SHSTYQVHLF 359
+ ++Y+ +F
Sbjct: 1306 TRNSYEREMF 1315
Score = 92 (37.4 bits), Expect = 1.0e-40, Sum P(2) = 1.0e-40
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 4 ILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
ILKP LRRLK DV L PK+ T+I+ + Q+ Y +L K
Sbjct: 1070 ILKPMMLRRLKEDVEKKLAPKEETIIEVELTNIQKKYYRAILEK 1113
Score = 41 (19.5 bits), Expect = 2.3e-35, Sum P(2) = 2.3e-35
Identities = 14/63 (22%), Positives = 31/63 (49%)
Query: 104 SNQLVQQPKRRKCSLNKTYDLTEIDRM-FDSMIERDDTSDTEVQVEDKIKVEPCENSSNA 162
+ Q + + KR + + K + L + R F + +E + + V+V+ ++V CE+
Sbjct: 729 TEQQLLKDKRIQQKI-KRFKLRQAQRAHFFADMEEEPFNPDYVEVDRVLEVSLCEDKDTG 787
Query: 163 QDV 165
+ V
Sbjct: 788 EPV 790
>SGD|S000000449 [details] [associations]
symbol:ISW1 "ATPase subunit of imitation-switch (ISWI) class
chromatin remodelers" species:4932 "Saccharomyces cerevisiae"
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0031491 "nucleosome binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0000182 "rDNA
binding" evidence=IDA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] [GO:0070870 "heterochromatin
maintenance involved in chromatin silencing" evidence=IGI;IMP]
[GO:0016587 "Isw1 complex" evidence=IPI] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=IMP;IDA] [GO:0006338 "chromatin
remodeling" evidence=IEA;IGI;IMP;IPI] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IMP] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000000449 GO:GO:0005524 GO:GO:0006200
GO:GO:0045944 EMBL:BK006936 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0006338 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
GO:GO:0034401 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006363 GO:GO:0006354 GO:GO:0006369
GeneTree:ENSGT00670000098110 GO:GO:0030874 GO:GO:0000182
GO:GO:0001178 GO:GO:0070870 GO:GO:0016587 PDB:2Y9Y PDB:2Y9Z
PDBsum:2Y9Y PDBsum:2Y9Z HOGENOM:HOG000192862 SUPFAM:SSF101224
EMBL:Z36114 PIR:S46122 RefSeq:NP_009804.1 ProteinModelPortal:P38144
SMR:P38144 DIP:DIP-6601N IntAct:P38144 MINT:MINT-614918
STRING:P38144 PaxDb:P38144 PeptideAtlas:P38144 EnsemblFungi:YBR245C
GeneID:852547 KEGG:sce:YBR245C CYGD:YBR245c OMA:LEMITHG
OrthoDB:EOG48SM27 EvolutionaryTrace:P38144 NextBio:971628
Genevestigator:P38144 GermOnline:YBR245C Uniprot:P38144
Length = 1129
Score = 376 (137.4 bits), Expect = 1.1e-40, Sum P(2) = 1.1e-40
Identities = 74/174 (42%), Positives = 113/174 (64%)
Query: 183 KMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNH 242
++ N+ M LR +HPYL + + DE++V ++ K+ VL++LL KLK+
Sbjct: 464 RLLNIMMQLRKCCNHPYLFDG----AEPGPPYTTDEHLVYNAAKLQVLDKLLKKLKEEGS 519
Query: 243 KTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-STEWGVFLLSTR 301
+ L+FS M ++L+ +E+ C NY Y R+ GS +E+R A+ +N ++ VFLL+TR
Sbjct: 520 RVLIFSQMSRLLDILEDYCYFRNYEYCRIDGSTAHEDRIQAIDDYNAPDSKKFVFLLTTR 579
Query: 302 AGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
AGG G+NLT+AD +LYDSDWNPQ D+QA R HRIGQ K V ++RLV+ ++ +
Sbjct: 580 AGGLGINLTSADVVVLYDSDWNPQADLQAMDRAHRIGQKKQVKVFRLVTDNSVE 633
Score = 97 (39.2 bits), Expect = 1.1e-40, Sum P(2) = 1.1e-40
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +L+PF LRR+K DV +L PKK + M Q+ Y K+L K +
Sbjct: 401 LHTVLQPFLLRRIKSDVETSLLPKKELNLYVGMSSMQKKWYKKILEKDL 449
>FB|FBgn0023395 [details] [associations]
symbol:Chd3 "Chd3" species:7227 "Drosophila melanogaster"
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS;NAS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:AE014296 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0006333
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 GeneTree:ENSGT00560000076896
InterPro:IPR009463 Pfam:PF06465 EMBL:AY071503 EMBL:AF007780
RefSeq:NP_649111.1 ProteinModelPortal:O16102 SMR:O16102
DIP:DIP-21327N MINT:MINT-1651376 STRING:O16102 PaxDb:O16102
EnsemblMetazoa:FBtr0074998 GeneID:40111 KEGG:dme:Dmel_CG9594
UCSC:CG9594-RA CTD:1107 FlyBase:FBgn0023395 InParanoid:O16102
OMA:IKWRDLA OrthoDB:EOG4JH9WN PhylomeDB:O16102 GenomeRNAi:40111
NextBio:817050 Bgee:O16102 GermOnline:CG9594 Uniprot:O16102
Length = 892
Score = 370 (135.3 bits), Expect = 1.4e-40, Sum P(2) = 1.4e-40
Identities = 78/183 (42%), Positives = 112/183 (61%)
Query: 184 MTNVTMVLRNIISHPYLINKPYRIV----DGKKEMVCDENIVSSSGKMIVLNQLLHKLKQ 239
+ N+ M LR +HPYL G EM ++ +SGK+ +L+++L +LK
Sbjct: 544 LLNIMMDLRKCCNHPYLFPSAAEEATISPSGLYEM---SSLTKASGKLDLLSKMLKQLKA 600
Query: 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGS-TEWGVFLL 298
NH+ L+FS M K+LN +E E Y Y R+ GSI+ + R A+ +FN +E VFLL
Sbjct: 601 DNHRVLLFSQMTKMLNVLEHFLEGEGYQYDRIDGSIKGDLRQKAIDRFNDPVSEHFVFLL 660
Query: 299 STRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHL 358
STRAGG G+NL ADT I++DSDWNP D+QA +R HR+GQ K V IYR V+H++ + +
Sbjct: 661 STRAGGLGINLATADTVIIFDSDWNPHNDVQAFSRAHRMGQKKKVMIYRFVTHNSVEERI 720
Query: 359 FTI 361
+
Sbjct: 721 MQV 723
Score = 98 (39.6 bits), Expect = 1.4e-40, Sum P(2) = 1.4e-40
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H IL+P LRRLK DV ++PPK ++ + Q+ Y +LTK
Sbjct: 482 LHEILEPHMLRRLKADVLKSMPPKSEFIVRVELSSMQKKFYKHILTK 528
Score = 43 (20.2 bits), Expect = 8.4e-35, Sum P(2) = 8.4e-35
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 33 MVPAQELMYTKVLTKTIGENREQ 55
++ E+ + +V TKT+ EN+ Q
Sbjct: 356 VIRKHEISFEEVTTKTMRENQTQ 378
>UNIPROTKB|I3LRQ2 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:CT954235 EMBL:CU466964
Ensembl:ENSSSCT00000027293 Uniprot:I3LRQ2
Length = 1051
Score = 380 (138.8 bits), Expect = 1.6e-40, Sum P(2) = 1.6e-40
Identities = 78/173 (45%), Positives = 119/173 (68%)
Query: 186 NVTMVLRNIISHPYLINKPYRIV-DGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKT 244
N+ M L+ +H YLI P + +E++ +++ SSGK+I+L++LL +L++ ++
Sbjct: 755 NIVMELKKCCNHCYLIKPPEENERENGQEILL--SLIRSSGKLILLDKLLTRLRERGNRV 812
Query: 245 LVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLSTRA 302
L+FS MV++L+ + E +++Y + RL GSI+ E R A+ FN GS ++ FLLSTRA
Sbjct: 813 LIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDF-CFLLSTRA 871
Query: 303 GGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
GG G+NL +ADT +++DSDWNPQ D+QA+AR HRIGQ K V IYRLV+ T +
Sbjct: 872 GGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVE 924
Score = 90 (36.7 bits), Expect = 1.6e-40, Sum P(2) = 1.6e-40
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H +L+PF LRR+K DV +LP K ++ M Q+ Y +LT+
Sbjct: 691 LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTR 737
>DICTYBASE|DDB_G0280705 [details] [associations]
symbol:DDB_G0280705 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00717
dictyBase:DDB_G0280705 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0003682 EMBL:AAFI02000037
GO:GO:0004003 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
KO:K14437 RefSeq:XP_641133.1 ProteinModelPortal:Q54UZ8
EnsemblProtists:DDB0220644 GeneID:8622691 KEGG:ddi:DDB_G0280705
InParanoid:Q54UZ8 OMA:YPHERID ProtClustDB:CLSZ2846801
Uniprot:Q54UZ8
Length = 2373
Score = 400 (145.9 bits), Expect = 1.7e-40, Sum P(2) = 1.7e-40
Identities = 82/182 (45%), Positives = 123/182 (67%)
Query: 184 MTNVTMVLRNIISHPYLI-----NKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLK 238
+ N+ M LR +HPYL ++ I D K+ + + ++ +SGK++++++LL KLK
Sbjct: 790 LLNIMMELRKCCNHPYLTKGVEQSETSSIKD--KDQIF-QKLIQASGKLVLIDKLLPKLK 846
Query: 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-STEWGVFL 297
NHK L+FS MV VL+ +++ Y + R+ GSI+ +R A+ +F+ ++ VFL
Sbjct: 847 LGNHKVLIFSQMVSVLDILDDYLTYRGYPHERIDGSIKGNDRQAAIDRFSKPDSDRFVFL 906
Query: 298 LSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVH 357
L TRAGG G+NLTAADT I++DSDWNPQ D+QA+ARCHRIGQ K V +YRLV+ +TY+
Sbjct: 907 LCTRAGGIGINLTAADTVIIFDSDWNPQNDLQAQARCHRIGQDKMVKVYRLVTKNTYERL 966
Query: 358 LF 359
+F
Sbjct: 967 MF 968
Score = 80 (33.2 bits), Expect = 1.7e-40, Sum P(2) = 1.7e-40
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 4 ILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
ILKP+ LRR+K V ++ PK+ T+++ + Q+ Y + K
Sbjct: 730 ILKPYLLRRMKERVEKSIAPKEETIVEVELTTVQKKYYRAIYEK 773
Score = 48 (22.0 bits), Expect = 3.8e-37, Sum P(2) = 3.8e-37
Identities = 18/91 (19%), Positives = 40/91 (43%)
Query: 85 STLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLT-EIDRMFDSMIERDDTSDT 143
+ L N + + D+N + K K +K +L+ E D+ +E+D+ +
Sbjct: 41 AALKN-KEILENNNDSDSDNNNN-KNKKSTKSKNSKKSNLSGEDSENDDNDVEKDENENN 98
Query: 144 EVQVEDKIKVEPCENSSNAQDVPSAEEKNVD 174
+V+++D+ + E E ++ E + D
Sbjct: 99 DVEMKDEEEEEEEEEELEEEEEEDDSEDSDD 129
Score = 41 (19.5 bits), Expect = 2.1e-36, Sum P(2) = 2.1e-36
Identities = 21/101 (20%), Positives = 41/101 (40%)
Query: 79 IWFSEESTLSNAS----SVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSM 134
+W E+ L+ + S+ A K ++ +++N NK T+ S
Sbjct: 22 LWKGEQDILNYSGLSRRSIAALKNKEILENNNDSDSDNNN----NKNKKSTKSKNSKKSN 77
Query: 135 IERDDTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEKNVDE 175
+ +D+ + D VE EN +N ++ EE+ +E
Sbjct: 78 LSGEDSEN------DDNDVEKDENENNDVEMKDEEEEEEEE 112
>UNIPROTKB|F1NS62 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:AADN02037964
EMBL:AADN02037962 EMBL:AADN02037963 IPI:IPI00573125
Ensembl:ENSGALT00000024254 Uniprot:F1NS62
Length = 895
Score = 370 (135.3 bits), Expect = 1.8e-40, Sum P(2) = 1.8e-40
Identities = 83/174 (47%), Positives = 113/174 (64%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTN 241
V + NV + LR ++HPYL N V+ + + D +IV +SGK+ +L++LL L
Sbjct: 309 VMLQNVLIQLRKCVAHPYLFNG----VEPEPFEIGD-HIVEASGKLCLLDKLLSFLYDGG 363
Query: 242 HKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTR 301
H+ L+FS M K+L+ +++ Y+Y RL GS+R EER+ A++ F G VFLLSTR
Sbjct: 364 HRVLLFSQMTKLLDILQDYMDYRGYSYERLDGSVRGEERHLAIKNF-GQQPIFVFLLSTR 422
Query: 302 AGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
AGG G+NLTAADT I DSD+NPQ D+QA AR HRIGQ KPV I RL+ T +
Sbjct: 423 AGGVGMNLTAADTVIFTDSDFNPQNDLQAIARAHRIGQHKPVKIIRLIGRDTVE 476
Score = 97 (39.2 bits), Expect = 1.8e-40, Sum P(2) = 1.8e-40
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+HN+L+PF LRR+K +V +LP K V+ M Q Y +LTK +
Sbjct: 250 LHNLLQPFLLRRVKSEVTADLPKKVEVVLYHGMSALQRKYYKAILTKDL 298
>DICTYBASE|DDB_G0284171 [details] [associations]
symbol:DDB_G0284171 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 dictyBase:DDB_G0284171
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006357 EMBL:AAFI02000063 GO:GO:0004003 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907
KO:K11367 RefSeq:XP_638708.1 ProteinModelPortal:Q54Q16
STRING:Q54Q16 EnsemblProtists:DDB0220640 GeneID:8624452
KEGG:ddi:DDB_G0284171 InParanoid:Q54Q16 OMA:DINATEF
ProtClustDB:CLSZ2732060 Uniprot:Q54Q16
Length = 1917
Score = 375 (137.1 bits), Expect = 2.6e-40, Sum P(2) = 2.6e-40
Identities = 80/190 (42%), Positives = 125/190 (65%)
Query: 171 KNVDEILHHVNVKMT--NVTMVLRNIISHPYLINKPYRIVD-GKKEMVCDENIVSSSGKM 227
KN E+ K T N+ L+ +HPYL + G K+++ ++++ +SGK+
Sbjct: 1010 KNFQELNKGKGEKTTLLNIMTELKKTCNHPYLYQNARDECELGAKDLL--DSMIRASGKL 1067
Query: 228 IVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQF 287
++L++LL +LK+T H+ L+FS MV++L+ + + ++ + RL GS+ E+R+ A+ +F
Sbjct: 1068 VLLDKLLIRLKETGHRVLIFSQMVRMLDILADYLKGRSFQFQRLDGSMSREKRSQAMDRF 1127
Query: 288 NG--STEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCI 345
N S ++ FLLST+AGG G+NL+ ADT I++DSDWNPQ D+QAEAR HRIGQ V I
Sbjct: 1128 NAVDSPDF-CFLLSTKAGGLGINLSTADTVIIFDSDWNPQNDLQAEARAHRIGQKNHVNI 1186
Query: 346 YRLVSHSTYQ 355
YRLVS S+ +
Sbjct: 1187 YRLVSKSSVE 1196
Score = 101 (40.6 bits), Expect = 2.6e-40, Sum P(2) = 2.6e-40
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTIGE 51
+H++LKP LRR+K DV +LPPK ++ + Q+ Y +LTK E
Sbjct: 964 LHSVLKPHLLRRIKKDVEKSLPPKTERILRVDLSNVQKKYYKWILTKNFQE 1014
>UNIPROTKB|D4AD08 [details] [associations]
symbol:Chd2 "Chromodomain helicase DNA binding protein 2
(Predicted)" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 EMBL:CH473980
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 KO:K11367 CTD:1106 OrthoDB:EOG4QRH36
IPI:IPI00778855 RefSeq:NP_001100993.1 UniGene:Rn.225034
Ensembl:ENSRNOT00000055829 GeneID:308738 KEGG:rno:308738
RGD:1310056 NextBio:659434 Uniprot:D4AD08
Length = 1834
Score = 385 (140.6 bits), Expect = 2.9e-40, Sum P(2) = 2.9e-40
Identities = 79/174 (45%), Positives = 120/174 (68%)
Query: 186 NVTMVLRNIISHPYLINKPYRIVDGKKEMVCD--ENIVSSSGKMIVLNQLLHKLKQTNHK 243
N+ M L+ +H YLI P D ++E + ++++ SSGK+I+L++LL +L++ ++
Sbjct: 760 NIVMELKKCCNHCYLIRAPE---DSERETGQEVLQSLIRSSGKLILLDKLLTRLRERGNR 816
Query: 244 TLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLSTR 301
L+FS MV++L+ + E +++Y + RL GSI+ E R A+ FN GS ++ FLLSTR
Sbjct: 817 VLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDF-CFLLSTR 875
Query: 302 AGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
AGG G+NL +ADT +++DSDWNPQ D+QA+AR HRIGQ K V IYRLV+ T +
Sbjct: 876 AGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVE 929
Score = 90 (36.7 bits), Expect = 2.9e-40, Sum P(2) = 2.9e-40
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H +L+PF LRR+K DV +LP K ++ M Q+ Y +LT+
Sbjct: 696 LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTR 742
>WB|WBGene00002637 [details] [associations]
symbol:let-418 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0048557 "embryonic digestive tract
morphogenesis" evidence=IGI] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IDA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0008134 "transcription
factor binding" evidence=IPI] [GO:0016581 "NuRD complex"
evidence=ISS] [GO:0040027 "negative regulation of vulval
development" evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0000122 GO:GO:0040035
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
GO:GO:0048557 HSSP:Q14839 EMBL:AF308445 EMBL:FO080294 PIR:T34239
RefSeq:NP_504523.1 UniGene:Cel.16862 ProteinModelPortal:G5EBZ4
SMR:G5EBZ4 IntAct:G5EBZ4 STRING:Q19815 EnsemblMetazoa:F26F12.7
GeneID:178970 KEGG:cel:CELE_F26F12.7 CTD:178970 WormBase:F26F12.7
OMA:VTQDATE NextBio:903342 Uniprot:G5EBZ4
Length = 1829
Score = 385 (140.6 bits), Expect = 3.6e-40, Sum P(2) = 3.6e-40
Identities = 76/183 (41%), Positives = 116/183 (63%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDEN-IVSSSGKMIVLNQLLHKLKQT 240
+ + NV M L+ +HPYL K +K + + ++ +SGK ++L ++L KLK
Sbjct: 882 MSLMNVLMELKKCCNHPYLFVKAELEAPKEKNGMYEGTALIKNSGKFVLLQKMLRKLKDG 941
Query: 241 NHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLL 298
H+ L+FS M ++L+ +E+LC E Y Y R+ GSI + R DA+ ++N G+ ++ +FLL
Sbjct: 942 GHRVLIFSQMTRMLDIMEDLCEYEGYRYERIDGSIMGQMRQDAIDRYNAPGAQQF-IFLL 1000
Query: 299 STRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHL 358
STRAGG G+NL ADT I+YDSDWNP DIQA +R HR+GQ V IYR V+ + + +
Sbjct: 1001 STRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKKSVEEKI 1060
Query: 359 FTI 361
++
Sbjct: 1061 TSV 1063
Score = 89 (36.4 bits), Expect = 3.6e-40, Sum P(2) = 3.6e-40
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+HN+L P LRRLK DV +P K ++ + Q+ Y +LT+
Sbjct: 822 LHNLLGPHMLRRLKADVLTGMPSKSELIVRVELSAMQKKWYKNILTR 868
>UNIPROTKB|G5EBZ4 [details] [associations]
symbol:let-418 "Protein let-418" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0000122 GO:GO:0040035
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
GO:GO:0048557 HSSP:Q14839 EMBL:AF308445 EMBL:FO080294 PIR:T34239
RefSeq:NP_504523.1 UniGene:Cel.16862 ProteinModelPortal:G5EBZ4
SMR:G5EBZ4 IntAct:G5EBZ4 STRING:Q19815 EnsemblMetazoa:F26F12.7
GeneID:178970 KEGG:cel:CELE_F26F12.7 CTD:178970 WormBase:F26F12.7
OMA:VTQDATE NextBio:903342 Uniprot:G5EBZ4
Length = 1829
Score = 385 (140.6 bits), Expect = 3.6e-40, Sum P(2) = 3.6e-40
Identities = 76/183 (41%), Positives = 116/183 (63%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDEN-IVSSSGKMIVLNQLLHKLKQT 240
+ + NV M L+ +HPYL K +K + + ++ +SGK ++L ++L KLK
Sbjct: 882 MSLMNVLMELKKCCNHPYLFVKAELEAPKEKNGMYEGTALIKNSGKFVLLQKMLRKLKDG 941
Query: 241 NHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLL 298
H+ L+FS M ++L+ +E+LC E Y Y R+ GSI + R DA+ ++N G+ ++ +FLL
Sbjct: 942 GHRVLIFSQMTRMLDIMEDLCEYEGYRYERIDGSIMGQMRQDAIDRYNAPGAQQF-IFLL 1000
Query: 299 STRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHL 358
STRAGG G+NL ADT I+YDSDWNP DIQA +R HR+GQ V IYR V+ + + +
Sbjct: 1001 STRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKKSVEEKI 1060
Query: 359 FTI 361
++
Sbjct: 1061 TSV 1063
Score = 89 (36.4 bits), Expect = 3.6e-40, Sum P(2) = 3.6e-40
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+HN+L P LRRLK DV +P K ++ + Q+ Y +LT+
Sbjct: 822 LHNLLGPHMLRRLKADVLTGMPSKSELIVRVELSAMQKKWYKNILTR 868
>UNIPROTKB|J9NSS6 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000043290 Uniprot:J9NSS6
Length = 1379
Score = 380 (138.8 bits), Expect = 4.2e-40, Sum P(2) = 4.2e-40
Identities = 78/173 (45%), Positives = 119/173 (68%)
Query: 186 NVTMVLRNIISHPYLINKPYRIV-DGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKT 244
N+ M L+ +H YLI P + +E++ +++ SSGK+I+L++LL +L++ ++
Sbjct: 753 NIVMELKKCCNHCYLIKPPEENERENGQEVLL--SLIRSSGKLILLDKLLTRLRERGNRV 810
Query: 245 LVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLSTRA 302
L+FS MV++L+ + E +++Y + RL GSI+ E R A+ FN GS ++ FLLSTRA
Sbjct: 811 LIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDF-CFLLSTRA 869
Query: 303 GGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
GG G+NL +ADT +++DSDWNPQ D+QA+AR HRIGQ K V IYRLV+ T +
Sbjct: 870 GGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVE 922
Score = 90 (36.7 bits), Expect = 4.2e-40, Sum P(2) = 4.2e-40
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H +L+PF LRR+K DV +LP K ++ M Q+ Y +LT+
Sbjct: 689 LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTR 735
>WB|WBGene00000482 [details] [associations]
symbol:chd-3 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=TAS]
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0046580 "negative regulation of Ras protein
signal transduction" evidence=IMP] [GO:0001709 "cell fate
determination" evidence=IMP] [GO:0000118 "histone deacetylase
complex" evidence=ISS] [GO:0003682 "chromatin binding"
evidence=TAS] [GO:0003678 "DNA helicase activity" evidence=ISS]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003682 GO:GO:0006338
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0001709 GO:GO:0046580 GO:GO:0008026 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0000118 GeneTree:ENSGT00560000076896
EMBL:AF308444 EMBL:Z67884 EMBL:Z67881 PIR:T20160 RefSeq:NP_510140.1
UniGene:Cel.16950 ProteinModelPortal:Q22516 SMR:Q22516
STRING:Q22516 PaxDb:Q22516 EnsemblMetazoa:T14G8.1 GeneID:181421
KEGG:cel:CELE_T14G8.1 UCSC:T14G8.1 CTD:181421 WormBase:T14G8.1
HOGENOM:HOG000231124 InParanoid:Q22516 OMA:INIIMEL NextBio:913870
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
Uniprot:Q22516
Length = 1787
Score = 382 (139.5 bits), Expect = 5.6e-40, Sum P(2) = 5.6e-40
Identities = 75/183 (40%), Positives = 114/183 (62%)
Query: 182 VKMTNVTMVLRNIISHPYLINKP-YRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQT 240
+ + N+ M L+ +HPYL K K M ++ ++GK ++L ++L KLK
Sbjct: 896 MSLINIIMELKKCCNHPYLFMKACLEAPKLKNGMYEGSALIKNAGKFVLLQKMLRKLKDG 955
Query: 241 NHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLL 298
H+ L+FS M +L+ +E+ C +E Y Y R+ GSI ++R DA+ ++N G+ ++ VFLL
Sbjct: 956 GHRVLIFSQMTMMLDILEDFCDVEGYKYERIDGSITGQQRQDAIDRYNAPGAKQF-VFLL 1014
Query: 299 STRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHL 358
STRAGG G+NL ADT I+YDSDWNP DIQA +R HR+GQ V IYR V+ + + +
Sbjct: 1015 STRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKGSVEERI 1074
Query: 359 FTI 361
++
Sbjct: 1075 TSV 1077
Score = 90 (36.7 bits), Expect = 5.6e-40, Sum P(2) = 5.6e-40
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+HN+L P LRRLK DV +P K+ ++ + Q+ Y +LT+
Sbjct: 836 LHNLLGPHMLRRLKADVLTGMPSKQELIVRVELSAMQKKYYKNILTR 882
>UNIPROTKB|Q22516 [details] [associations]
symbol:chd-3 "Chromodomain-helicase-DNA-binding protein 3
homolog" species:6239 "Caenorhabditis elegans" [GO:0032508 "DNA
duplex unwinding" evidence=ISS] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003682 GO:GO:0006338 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 GO:GO:0040027 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0001709 GO:GO:0046580
GO:GO:0008026 InterPro:IPR023780 PROSITE:PS00598 GO:GO:0000118
GeneTree:ENSGT00560000076896 EMBL:AF308444 EMBL:Z67884 EMBL:Z67881
PIR:T20160 RefSeq:NP_510140.1 UniGene:Cel.16950
ProteinModelPortal:Q22516 SMR:Q22516 STRING:Q22516 PaxDb:Q22516
EnsemblMetazoa:T14G8.1 GeneID:181421 KEGG:cel:CELE_T14G8.1
UCSC:T14G8.1 CTD:181421 WormBase:T14G8.1 HOGENOM:HOG000231124
InParanoid:Q22516 OMA:INIIMEL NextBio:913870 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 Uniprot:Q22516
Length = 1787
Score = 382 (139.5 bits), Expect = 5.6e-40, Sum P(2) = 5.6e-40
Identities = 75/183 (40%), Positives = 114/183 (62%)
Query: 182 VKMTNVTMVLRNIISHPYLINKP-YRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQT 240
+ + N+ M L+ +HPYL K K M ++ ++GK ++L ++L KLK
Sbjct: 896 MSLINIIMELKKCCNHPYLFMKACLEAPKLKNGMYEGSALIKNAGKFVLLQKMLRKLKDG 955
Query: 241 NHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLL 298
H+ L+FS M +L+ +E+ C +E Y Y R+ GSI ++R DA+ ++N G+ ++ VFLL
Sbjct: 956 GHRVLIFSQMTMMLDILEDFCDVEGYKYERIDGSITGQQRQDAIDRYNAPGAKQF-VFLL 1014
Query: 299 STRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHL 358
STRAGG G+NL ADT I+YDSDWNP DIQA +R HR+GQ V IYR V+ + + +
Sbjct: 1015 STRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRLGQKHKVMIYRFVTKGSVEERI 1074
Query: 359 FTI 361
++
Sbjct: 1075 TSV 1077
Score = 90 (36.7 bits), Expect = 5.6e-40, Sum P(2) = 5.6e-40
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+HN+L P LRRLK DV +P K+ ++ + Q+ Y +LT+
Sbjct: 836 LHNLLGPHMLRRLKADVLTGMPSKQELIVRVELSAMQKKYYKNILTR 882
>UNIPROTKB|E1C1A9 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AADN02041467 EMBL:AADN02041468 EMBL:AADN02041469
EMBL:AADN02041470 IPI:IPI00575702 Ensembl:ENSGALT00000011260
Uniprot:E1C1A9
Length = 1727
Score = 381 (139.2 bits), Expect = 6.5e-40, Sum P(2) = 6.5e-40
Identities = 78/172 (45%), Positives = 118/172 (68%)
Query: 186 NVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTL 245
N+ M L+ +H YLI KP + + + ++++ SSGK+I+L++LL +L+ ++ L
Sbjct: 755 NIVMELKKCCNHCYLI-KPPEENERENGIETLQSLIRSSGKLILLDKLLTRLRDRGNRVL 813
Query: 246 VFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLSTRAG 303
+FS MV++L+ + E +++Y + RL GSI+ E R A+ FN GS ++ FLLSTRAG
Sbjct: 814 IFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDF-CFLLSTRAG 872
Query: 304 GQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
G G+NL +ADT +++DSDWNPQ D+QA+AR HRIGQ K V IYRLV+ T +
Sbjct: 873 GLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVE 924
Score = 90 (36.7 bits), Expect = 6.5e-40, Sum P(2) = 6.5e-40
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H +L+PF LRR+K DV +LP K ++ M Q+ Y +LT+
Sbjct: 691 LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTR 737
>DICTYBASE|DDB_G0292948 [details] [associations]
symbol:isw "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0016587 "Isw1
complex" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0292948 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0003677 EMBL:AAFI02000197
GO:GO:0016887 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016587 KO:K11654 SUPFAM:SSF101224
RefSeq:XP_629432.1 ProteinModelPortal:Q54CI4 STRING:Q54CI4
PRIDE:Q54CI4 EnsemblProtists:DDB0231763 GeneID:8628951
KEGG:ddi:DDB_G0292948 InParanoid:Q54CI4 OMA:IREANAF
ProtClustDB:CLSZ2728711 Uniprot:Q54CI4
Length = 1221
Score = 369 (135.0 bits), Expect = 7.7e-40, Sum P(2) = 7.7e-40
Identities = 73/177 (41%), Positives = 114/177 (64%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKE--MVCDENIVSSSGKMIVLNQLLHKLKQ 239
V++ N+ M LR +HPYL DG +E E+++ +SGKM +L++LL KLK+
Sbjct: 543 VRLLNICMQLRKACNHPYLF-------DGAEEEPYTTGEHLIDNSGKMALLDKLLKKLKE 595
Query: 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-STEWGVFLL 298
+ L+FS M ++L+ +E+ + Y Y R+ GS + R ++++ +N ++ FLL
Sbjct: 596 RGSRVLIFSQMSRMLDILEDYMLYRGYKYARIDGSTESIVRENSIENYNKPGSDLFAFLL 655
Query: 299 STRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
+TRAGG G+ L AD IL+DSDWNPQ+D+QA+ R HRIGQTKPV +YR V+ ++ +
Sbjct: 656 TTRAGGLGITLNTADIVILFDSDWNPQMDLQAQDRAHRIGQTKPVTVYRFVTENSME 712
Score = 97 (39.2 bits), Expect = 7.7e-40, Sum P(2) = 7.7e-40
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +L+PF LRR+K +V +LPPKK + + Q+ Y ++L+K +
Sbjct: 481 LHKVLRPFLLRRIKTEVEKSLPPKKEIKLFVGLSTMQKEWYKRLLSKDL 529
Score = 43 (20.2 bits), Expect = 3.6e-34, Sum P(2) = 3.6e-34
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 138 DDTSDTEVQVEDKIKVEPCENSSNAQDVPSA--EEKNVDE 175
+D + E +V ++ +V+ E + N +D P ++ VD+
Sbjct: 65 NDNENEEDEVMEEEEVDDNEENGNDEDAPHPFFDDDQVDD 104
>UNIPROTKB|J9NX79 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000044612
Uniprot:J9NX79
Length = 1689
Score = 380 (138.8 bits), Expect = 7.7e-40, Sum P(2) = 7.7e-40
Identities = 78/173 (45%), Positives = 119/173 (68%)
Query: 186 NVTMVLRNIISHPYLINKPYRIV-DGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKT 244
N+ M L+ +H YLI P + +E++ +++ SSGK+I+L++LL +L++ ++
Sbjct: 722 NIVMELKKCCNHCYLIKPPEENERENGQEVLL--SLIRSSGKLILLDKLLTRLRERGNRV 779
Query: 245 LVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLSTRA 302
L+FS MV++L+ + E +++Y + RL GSI+ E R A+ FN GS ++ FLLSTRA
Sbjct: 780 LIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDF-CFLLSTRA 838
Query: 303 GGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
GG G+NL +ADT +++DSDWNPQ D+QA+AR HRIGQ K V IYRLV+ T +
Sbjct: 839 GGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVE 891
Score = 90 (36.7 bits), Expect = 7.7e-40, Sum P(2) = 7.7e-40
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H +L+PF LRR+K DV +LP K ++ M Q+ Y +LT+
Sbjct: 658 LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTR 704
>UNIPROTKB|I3LQZ8 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000025402
Uniprot:I3LQZ8
Length = 1709
Score = 380 (138.8 bits), Expect = 8.0e-40, Sum P(2) = 8.0e-40
Identities = 78/173 (45%), Positives = 119/173 (68%)
Query: 186 NVTMVLRNIISHPYLINKPYRIV-DGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKT 244
N+ M L+ +H YLI P + +E++ +++ SSGK+I+L++LL +L++ ++
Sbjct: 742 NIVMELKKCCNHCYLIKPPEENERENGQEILL--SLIRSSGKLILLDKLLTRLRERGNRV 799
Query: 245 LVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLSTRA 302
L+FS MV++L+ + E +++Y + RL GSI+ E R A+ FN GS ++ FLLSTRA
Sbjct: 800 LIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDF-CFLLSTRA 858
Query: 303 GGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
GG G+NL +ADT +++DSDWNPQ D+QA+AR HRIGQ K V IYRLV+ T +
Sbjct: 859 GGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVE 911
Score = 90 (36.7 bits), Expect = 8.0e-40, Sum P(2) = 8.0e-40
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H +L+PF LRR+K DV +LP K ++ M Q+ Y +LT+
Sbjct: 678 LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTR 724
>UNIPROTKB|O14647 [details] [associations]
symbol:CHD2 "Chromodomain-helicase-DNA-binding protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0004003 EMBL:CH471101
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 KO:K11367 HOGENOM:HOG000207917
EMBL:AF006514 EMBL:BT007050 EMBL:FJ515838 EMBL:AC013394
EMBL:BC007347 EMBL:CR978407 IPI:IPI00023109 IPI:IPI00815893
RefSeq:NP_001036037.1 RefSeq:NP_001262.3 UniGene:Hs.220864
ProteinModelPortal:O14647 SMR:O14647 IntAct:O14647 STRING:O14647
PhosphoSite:O14647 PaxDb:O14647 PRIDE:O14647 DNASU:1106
Ensembl:ENST00000394196 Ensembl:ENST00000420239
Ensembl:ENST00000557381 GeneID:1106 KEGG:hsa:1106 UCSC:uc002bso.1
UCSC:uc002bsp.3 CTD:1106 GeneCards:GC15P093533 HGNC:HGNC:1917
MIM:602119 neXtProt:NX_O14647 PharmGKB:PA26453 InParanoid:O14647
OMA:AHSWCKN OrthoDB:EOG4QRH36 ChiTaRS:CHD2 GenomeRNAi:1106
NextBio:4584 ArrayExpress:O14647 Bgee:O14647 CleanEx:HS_CHD2
Genevestigator:O14647 GermOnline:ENSG00000173575 Uniprot:O14647
Length = 1828
Score = 380 (138.8 bits), Expect = 9.7e-40, Sum P(2) = 9.7e-40
Identities = 78/173 (45%), Positives = 119/173 (68%)
Query: 186 NVTMVLRNIISHPYLINKPYRIV-DGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKT 244
N+ M L+ +H YLI P + +E++ +++ SSGK+I+L++LL +L++ ++
Sbjct: 753 NIVMELKKCCNHCYLIKPPEENERENGQEILL--SLIRSSGKLILLDKLLTRLRERGNRV 810
Query: 245 LVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLSTRA 302
L+FS MV++L+ + E +++Y + RL GSI+ E R A+ FN GS ++ FLLSTRA
Sbjct: 811 LIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDF-CFLLSTRA 869
Query: 303 GGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
GG G+NL +ADT +++DSDWNPQ D+QA+AR HRIGQ K V IYRLV+ T +
Sbjct: 870 GGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVE 922
Score = 90 (36.7 bits), Expect = 9.7e-40, Sum P(2) = 9.7e-40
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H +L+PF LRR+K DV +LP K ++ M Q+ Y +LT+
Sbjct: 689 LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTR 735
>UNIPROTKB|E2R5Z7 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000017614
NextBio:20854276 Uniprot:E2R5Z7
Length = 1831
Score = 380 (138.8 bits), Expect = 9.7e-40, Sum P(2) = 9.7e-40
Identities = 78/173 (45%), Positives = 119/173 (68%)
Query: 186 NVTMVLRNIISHPYLINKPYRIV-DGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKT 244
N+ M L+ +H YLI P + +E++ +++ SSGK+I+L++LL +L++ ++
Sbjct: 756 NIVMELKKCCNHCYLIKPPEENERENGQEVLL--SLIRSSGKLILLDKLLTRLRERGNRV 813
Query: 245 LVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLSTRA 302
L+FS MV++L+ + E +++Y + RL GSI+ E R A+ FN GS ++ FLLSTRA
Sbjct: 814 LIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDF-CFLLSTRA 872
Query: 303 GGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
GG G+NL +ADT +++DSDWNPQ D+QA+AR HRIGQ K V IYRLV+ T +
Sbjct: 873 GGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVE 925
Score = 90 (36.7 bits), Expect = 9.7e-40, Sum P(2) = 9.7e-40
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H +L+PF LRR+K DV +LP K ++ M Q+ Y +LT+
Sbjct: 692 LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTR 738
>UNIPROTKB|F1SA77 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000002524
Uniprot:F1SA77
Length = 1831
Score = 380 (138.8 bits), Expect = 9.7e-40, Sum P(2) = 9.7e-40
Identities = 78/173 (45%), Positives = 119/173 (68%)
Query: 186 NVTMVLRNIISHPYLINKPYRIV-DGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKT 244
N+ M L+ +H YLI P + +E++ +++ SSGK+I+L++LL +L++ ++
Sbjct: 755 NIVMELKKCCNHCYLIKPPEENERENGQEILL--SLIRSSGKLILLDKLLTRLRERGNRV 812
Query: 245 LVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLSTRA 302
L+FS MV++L+ + E +++Y + RL GSI+ E R A+ FN GS ++ FLLSTRA
Sbjct: 813 LIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDF-CFLLSTRA 871
Query: 303 GGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
GG G+NL +ADT +++DSDWNPQ D+QA+AR HRIGQ K V IYRLV+ T +
Sbjct: 872 GGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVE 924
Score = 90 (36.7 bits), Expect = 9.7e-40, Sum P(2) = 9.7e-40
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H +L+PF LRR+K DV +LP K ++ M Q+ Y +LT+
Sbjct: 691 LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTR 737
>UNIPROTKB|J9PA90 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000045903 Uniprot:J9PA90
Length = 1840
Score = 380 (138.8 bits), Expect = 9.8e-40, Sum P(2) = 9.8e-40
Identities = 78/173 (45%), Positives = 119/173 (68%)
Query: 186 NVTMVLRNIISHPYLINKPYRIV-DGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKT 244
N+ M L+ +H YLI P + +E++ +++ SSGK+I+L++LL +L++ ++
Sbjct: 766 NIVMELKKCCNHCYLIKPPEENERENGQEVLL--SLIRSSGKLILLDKLLTRLRERGNRV 823
Query: 245 LVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLSTRA 302
L+FS MV++L+ + E +++Y + RL GSI+ E R A+ FN GS ++ FLLSTRA
Sbjct: 824 LIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDF-CFLLSTRA 882
Query: 303 GGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
GG G+NL +ADT +++DSDWNPQ D+QA+AR HRIGQ K V IYRLV+ T +
Sbjct: 883 GGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVE 935
Score = 90 (36.7 bits), Expect = 9.8e-40, Sum P(2) = 9.8e-40
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H +L+PF LRR+K DV +LP K ++ M Q+ Y +LT+
Sbjct: 702 LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTR 748
>ZFIN|ZDB-GENE-050419-256 [details] [associations]
symbol:chd2 "chromodomain helicase DNA binding
protein 2" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-050419-256
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:BX649578 IPI:IPI00999128
Ensembl:ENSDART00000127730 ArrayExpress:E7F7R2 Bgee:E7F7R2
Uniprot:E7F7R2
Length = 1813
Score = 376 (137.4 bits), Expect = 2.0e-39, Sum P(2) = 2.0e-39
Identities = 76/174 (43%), Positives = 117/174 (67%)
Query: 186 NVTMVLRNIISHPYLINKPYRIVDGKKEMVCD--ENIVSSSGKMIVLNQLLHKLKQTNHK 243
N+ M L+ +H +LI +P DG+ + + +++V GK+++L++LL +LK ++
Sbjct: 758 NIVMELKKCCNHAFLIKQPE---DGENDAPQEHLQSLVRGGGKLVLLDKLLTRLKDRGNR 814
Query: 244 TLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLSTR 301
L+FS MV++L+ + + ++ Y + RL GSI+ E R A+ FN GS ++ FLLSTR
Sbjct: 815 VLIFSQMVRMLDILADYLSMKRYQFQRLDGSIKGELRKQALDHFNAEGSEDF-CFLLSTR 873
Query: 302 AGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
AGG G+NL +ADT +++DSDWNPQ D+QA+AR HRIGQ K V IYRLV+ T +
Sbjct: 874 AGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVE 927
Score = 91 (37.1 bits), Expect = 2.0e-39, Sum P(2) = 2.0e-39
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H +L+PF LRR+K DV +LP K ++ M Q+ Y +LT+
Sbjct: 694 LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVDMSAQQKQFYKWILTR 740
Score = 51 (23.0 bits), Expect = 3.1e-35, Sum P(2) = 3.1e-35
Identities = 16/62 (25%), Positives = 27/62 (43%)
Query: 83 EESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSD 142
EE SS ++ + E+ + S +L + + K S +K R +S E DD D
Sbjct: 160 EEDVEEETSSSESEQEEKKVRSRRLPARRPQTKSSASKQSQKGRKQRKQESSDEDDDDDD 219
Query: 143 TE 144
+
Sbjct: 220 DD 221
Score = 49 (22.3 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
Identities = 27/100 (27%), Positives = 38/100 (38%)
Query: 83 EESTLSNASSVKAGKREQTI--------DSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSM 134
E ST SNASS A + +S Q ++ + R N T D +E S
Sbjct: 12 EGSTQSNASSNSASEESNRSGSESGSQSESEQGSEKAQSRHSESNSTSD-SESHSESGSE 70
Query: 135 IERDDTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEKNVD 174
+ + QV+DK P N DV E++ D
Sbjct: 71 SNGSKSHQSSAQVKDK----PVRKKDNLADVKKMWEEHPD 106
Score = 37 (18.1 bits), Expect = 9.1e-34, Sum P(2) = 9.1e-34
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 110 QPKRRKCSLNKTYDLTEIDRMFDSMIERD---DTSDTEVQVEDK 150
+ +RK S K + T D DS E D +TS +E + E+K
Sbjct: 136 ESSKRKSSRQKKKENTWKDD--DSNDEEDVEEETSSSESEQEEK 177
>UNIPROTKB|G3MXX3 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:DAAA02051958 Ensembl:ENSBTAT00000065179
Uniprot:G3MXX3
Length = 1810
Score = 375 (137.1 bits), Expect = 3.2e-39, Sum P(2) = 3.2e-39
Identities = 77/173 (44%), Positives = 119/173 (68%)
Query: 186 NVTMVLRNIISHPYLINKPYRIV-DGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKT 244
N+ M L+ +H +LI P + +E++ +++ SSGK+I+L++LL +L++ ++
Sbjct: 735 NIVMELKKCCNHCHLIKPPEENERENGQEVLL--SLIRSSGKLILLDKLLTRLRERGNRV 792
Query: 245 LVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLSTRA 302
L+FS MV++L+ + E +++Y + RL GSI+ E R A+ FN GS ++ FLLSTRA
Sbjct: 793 LIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDF-CFLLSTRA 851
Query: 303 GGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
GG G+NL +ADT +++DSDWNPQ D+QA+AR HRIGQ K V IYRLV+ T +
Sbjct: 852 GGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTVE 904
Score = 90 (36.7 bits), Expect = 3.2e-39, Sum P(2) = 3.2e-39
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H +L+PF LRR+K DV +LP K ++ M Q+ Y +LT+
Sbjct: 671 LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTR 717
>SGD|S000000966 [details] [associations]
symbol:CHD1 "Chromatin remodeler that regulates various
aspects of transcription" species:4932 "Saccharomyces cerevisiae"
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0042766
"nucleosome mobilization" evidence=IDA] [GO:0000182 "rDNA binding"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0046695 "SLIK (SAGA-like)
complex" evidence=IDA] [GO:0000124 "SAGA complex" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IGI;IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IDA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:2000616
"negative regulation of histone H3-K9 acetylation" evidence=IMP]
[GO:0071441 "negative regulation of histone H3-K14 acetylation"
evidence=IMP] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IGI;IPI] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0031490 "chromatin DNA binding"
evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IDA] [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=IGI;IMP] [GO:0071894 "histone H2B conserved C-terminal
lysine ubiquitination" evidence=IMP] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0035064 "methylated histone residue binding" evidence=IDA]
[GO:2000104 "negative regulation of DNA-dependent DNA replication"
evidence=IGI] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SGD:S000000966 Pfam:PF00385 GO:GO:0005739
GO:GO:0005524 GO:GO:2000104 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:BK006939 GO:GO:0000124 GO:GO:0046695 GO:GO:0004386
GO:GO:0034401 GO:GO:0006368 GO:GO:0035064 GO:GO:0031490
GO:GO:0042766 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
GO:GO:0016584 EMBL:U18917 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 GO:GO:0006363 GO:GO:0008094 GO:GO:0006369
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 PIR:S30818 RefSeq:NP_011091.1
PDB:2DY7 PDB:2DY8 PDB:2H1E PDB:2XB0 PDB:3MWY PDB:3TED PDBsum:2DY7
PDBsum:2DY8 PDBsum:2H1E PDBsum:2XB0 PDBsum:3MWY PDBsum:3TED
ProteinModelPortal:P32657 SMR:P32657 DIP:DIP-6362N IntAct:P32657
MINT:MINT-618890 STRING:P32657 PaxDb:P32657 PeptideAtlas:P32657
EnsemblFungi:YER164W GeneID:856911 KEGG:sce:YER164W CYGD:YER164w
OMA:IKWQFMA OrthoDB:EOG4TF3TB SABIO-RK:P32657
EvolutionaryTrace:P32657 NextBio:983353 Genevestigator:P32657
GermOnline:YER164W GO:GO:0030874 GO:GO:0000182 GO:GO:0071441
GO:GO:2000616 GO:GO:0001178 Uniprot:P32657
Length = 1468
Score = 374 (136.7 bits), Expect = 4.6e-39, Sum P(2) = 4.6e-39
Identities = 79/181 (43%), Positives = 118/181 (65%)
Query: 184 MTNVTMVLRNIISHPYLI-NKPYRIV----DGK--KEMVCDENIVSSSGKMIVLNQLLHK 236
+ N+ L+ +HPYL N R++ DGK +E V ++ SSGKM++L+QLL +
Sbjct: 648 LLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVL-RGLIMSSGKMVLLDQLLTR 706
Query: 237 LKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG--STEWG 294
LK+ H+ L+FS MV++L+ + + ++ N+ RL G++ + +R ++ FN S ++
Sbjct: 707 LKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDF- 765
Query: 295 VFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTY 354
VFLLSTRAGG G+NL ADT +++DSDWNPQ D+QA AR HRIGQ V +YRLVS T
Sbjct: 766 VFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDTV 825
Query: 355 Q 355
+
Sbjct: 826 E 826
Score = 87 (35.7 bits), Expect = 4.6e-39, Sum P(2) = 4.6e-39
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H ++PF LRRLK DV +LP K ++ + Q Y +LTK
Sbjct: 586 LHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTK 632
>POMBASE|SPAC1783.05 [details] [associations]
symbol:hrp1 "ATP-dependent DNA helicase Hrp1"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0000779 "condensed chromosome, centromeric
region" evidence=IDA] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISM] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=IMP] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IMP] [GO:0007076 "mitotic chromosome
condensation" evidence=IMP] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0016592 "mediator complex"
evidence=IPI] [GO:0030466 "chromatin silencing at silent
mating-type cassette" evidence=IMP] [GO:0030702 "chromatin
silencing at centromere" evidence=IMP] [GO:0035067 "negative
regulation of histone acetylation" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0048096 "chromatin-mediated maintenance
of transcription" evidence=TAS] [GO:0060303 "regulation of
nucleosome density" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 PomBase:SPAC1783.05 Pfam:PF00385 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0045944
GO:GO:0030466 GO:GO:0000122 GO:GO:0000790 GO:GO:0030702
GO:GO:0004003 GO:GO:0007076 GO:GO:0048096 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000779 GO:GO:0035067 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0016592 GO:GO:0006369 KO:K11367
HOGENOM:HOG000207917 OrthoDB:EOG4TF3TB EMBL:X99021 EMBL:AB027852
PIR:T43334 PIR:T50107 RefSeq:NP_593660.1 ProteinModelPortal:Q9US25
MINT:MINT-4979817 STRING:Q9US25 EnsemblFungi:SPAC1783.05.1
GeneID:2542363 KEGG:spo:SPAC1783.05 OMA:VERVIKW NextBio:20803422
GO:GO:0060303 Uniprot:Q9US25
Length = 1373
Score = 377 (137.8 bits), Expect = 6.0e-39, Sum P(2) = 6.0e-39
Identities = 79/179 (44%), Positives = 113/179 (63%)
Query: 182 VKMTNVTMVLRNIISHPYLI-NKPYRIVDGKKEMVCD--ENIVSSSGKMIVLNQLLHKLK 238
+ + N+ + L+ + +HPYL + + G+K D I+ +SGKM++L++LL +LK
Sbjct: 658 LSLLNIVVELKKVSNHPYLFPGAAEKWMMGRKMTREDTLRGIIMNSGKMVLLDKLLQRLK 717
Query: 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG--STEWGVF 296
H+ L+FS MV++LN + E L YNY RL G+I R ++ FN S ++ VF
Sbjct: 718 HDGHRVLIFSQMVRMLNILGEYMSLRGYNYQRLDGTIPASVRRVSIDHFNAPDSPDF-VF 776
Query: 297 LLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
LLSTRAGG G+NL ADT I++DSDWNPQ D+QA AR HRIGQ V +YR +S T +
Sbjct: 777 LLSTRAGGLGINLNTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVNVYRFLSKDTVE 835
Score = 82 (33.9 bits), Expect = 6.0e-39, Sum P(2) = 6.0e-39
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 5 LKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
L+PF LRRLK DV +LP K ++ + Q Y +LTK
Sbjct: 601 LQPFILRRLKKDVEKSLPSKSERILRVELSDMQTEWYKNILTK 643
Score = 39 (18.8 bits), Expect = 1.9e-34, Sum P(2) = 1.9e-34
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 138 DDTSDTEVQVEDKIKVE 154
DD D E +VE++++ E
Sbjct: 188 DDFEDEEEEVEEQVEEE 204
>UNIPROTKB|F5GWX5 [details] [associations]
symbol:CHD4 "Chromodomain-helicase-DNA-binding protein 4"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:AC006064
IPI:IPI00000846 HGNC:HGNC:1919 ChiTaRS:CHD4
ProteinModelPortal:F5GWX5 SMR:F5GWX5 PRIDE:F5GWX5
Ensembl:ENST00000544040 UCSC:uc001qpn.3 ArrayExpress:F5GWX5
Bgee:F5GWX5 Uniprot:F5GWX5
Length = 1905
Score = 370 (135.3 bits), Expect = 6.0e-39, Sum P(2) = 6.0e-39
Identities = 77/179 (43%), Positives = 111/179 (62%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKE---MVCDENIVSSSGKMIVLNQLLHKLK 238
V + NV M L+ +HPYL P ++ K M ++ +SGK+++L ++L LK
Sbjct: 999 VSLLNVVMDLKKCCNHPYLF--PVAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLK 1056
Query: 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVF 296
+ H+ L+FS M K+L+ +E+ E Y Y R+ G I R +A+ +FN G+ ++ F
Sbjct: 1057 EGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQF-CF 1115
Query: 297 LLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
LLSTRAGG G+NL ADT I+YDSDWNP DIQA +R HRIGQ K V IYR V+ ++ +
Sbjct: 1116 LLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE 1174
Score = 93 (37.8 bits), Expect = 6.0e-39, Sum P(2) = 6.0e-39
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H++L P LRRLK DV N+P K ++ + P Q+ Y +LT+
Sbjct: 939 LHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTR 985
>WB|WBGene00010369 [details] [associations]
symbol:chd-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0009792 GO:GO:0003677
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 OMA:VERVIKW EMBL:Z92970 PIR:T23056
RefSeq:NP_491994.2 ProteinModelPortal:O17909 SMR:O17909
STRING:O17909 PaxDb:O17909 EnsemblMetazoa:H06O01.2 GeneID:172432
KEGG:cel:CELE_H06O01.2 UCSC:H06O01.2 CTD:172432 WormBase:H06O01.2
InParanoid:O17909 NextBio:875487 Uniprot:O17909
Length = 1461
Score = 360 (131.8 bits), Expect = 6.0e-39, Sum P(2) = 6.0e-39
Identities = 77/172 (44%), Positives = 112/172 (65%)
Query: 186 NVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTL 245
N+ M L+ +H L + I D + + + ++ SSGK+I+L++LL +LK H+ L
Sbjct: 674 NLVMELKKCCNHASLTRQYDHIYDDAQGRL--QQLLKSSGKLILLDKLLCRLKDKGHRVL 731
Query: 246 VFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLSTRAG 303
+FS MV +L+ ++E L + RL GS+R + R A+ +N GST++ FLLSTRAG
Sbjct: 732 IFSQMVMMLDILQEYLQLRRFPSQRLDGSMRADLRKQALDHYNAPGSTDFA-FLLSTRAG 790
Query: 304 GQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
G G+NL ADT I++DSDWNPQ D+QA +R HRIGQTK V IYRLV+ + +
Sbjct: 791 GLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQTKTVNIYRLVTKGSVE 842
Score = 100 (40.3 bits), Expect = 6.0e-39, Sum P(2) = 6.0e-39
Identities = 21/51 (41%), Positives = 29/51 (56%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTIGE 51
+H L+PF LRR+K DV +LPPK ++ M Q+ Y +LTK E
Sbjct: 610 LHKKLEPFLLRRVKKDVEKSLPPKTEQILRVDMTAHQKQFYKWILTKNYRE 660
>UNIPROTKB|E2RHA0 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1108 KO:K11643 EMBL:AAEX03015287 RefSeq:XP_867754.2
Ensembl:ENSCAFT00000023774 GeneID:477714 KEGG:cfa:477714
Uniprot:E2RHA0
Length = 1912
Score = 370 (135.3 bits), Expect = 6.1e-39, Sum P(2) = 6.1e-39
Identities = 77/179 (43%), Positives = 111/179 (62%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKE---MVCDENIVSSSGKMIVLNQLLHKLK 238
V + NV M L+ +HPYL P ++ K M ++ +SGK+++L ++L LK
Sbjct: 1006 VSLLNVVMDLKKCCNHPYLF--PVAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLK 1063
Query: 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVF 296
+ H+ L+FS M K+L+ +E+ E Y Y R+ G I R +A+ +FN G+ ++ F
Sbjct: 1064 EGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQF-CF 1122
Query: 297 LLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
LLSTRAGG G+NL ADT I+YDSDWNP DIQA +R HRIGQ K V IYR V+ ++ +
Sbjct: 1123 LLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE 1181
Score = 93 (37.8 bits), Expect = 6.1e-39, Sum P(2) = 6.1e-39
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H++L P LRRLK DV N+P K ++ + P Q+ Y +LT+
Sbjct: 946 LHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTR 992
>UNIPROTKB|Q14839 [details] [associations]
symbol:CHD4 "Chromodomain-helicase-DNA-binding protein 4"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005813 "centrosome" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 GO:GO:0016568
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786 PROSITE:PS01359
Pathway_Interaction_DB:hdac_classi_pathway InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016581 InterPro:IPR023780 PROSITE:PS00598
HOGENOM:HOG000231124 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326 EMBL:X86691
EMBL:AC006064 EMBL:BC038596 IPI:IPI00000846 IPI:IPI00455210
RefSeq:NP_001264.2 UniGene:Hs.162233 PDB:1MM2 PDB:1MM3 PDB:2EE1
PDB:2L5U PDB:2L75 PDBsum:1MM2 PDBsum:1MM3 PDBsum:2EE1 PDBsum:2L5U
PDBsum:2L75 ProteinModelPortal:Q14839 SMR:Q14839 DIP:DIP-31183N
IntAct:Q14839 MINT:MINT-349766 STRING:Q14839 PhosphoSite:Q14839
DMDM:311033360 PaxDb:Q14839 PRIDE:Q14839 DNASU:1108
Ensembl:ENST00000309577 Ensembl:ENST00000357008
Ensembl:ENST00000544484 GeneID:1108 KEGG:hsa:1108 UCSC:uc001qpo.3
UCSC:uc001qpp.3 CTD:1108 GeneCards:GC12M006679 H-InvDB:HIX0201859
HGNC:HGNC:1919 HPA:HPA012008 MIM:603277 neXtProt:NX_Q14839
PharmGKB:PA26455 KO:K11643 OMA:ERMLLCR OrthoDB:EOG4WH8JX
ChiTaRS:CHD4 EvolutionaryTrace:Q14839 GenomeRNAi:1108 NextBio:4598
PMAP-CutDB:Q14839 ArrayExpress:Q14839 Bgee:Q14839 CleanEx:HS_CHD4
Genevestigator:Q14839 GermOnline:ENSG00000111642 Uniprot:Q14839
Length = 1912
Score = 370 (135.3 bits), Expect = 6.1e-39, Sum P(2) = 6.1e-39
Identities = 77/179 (43%), Positives = 111/179 (62%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKE---MVCDENIVSSSGKMIVLNQLLHKLK 238
V + NV M L+ +HPYL P ++ K M ++ +SGK+++L ++L LK
Sbjct: 1006 VSLLNVVMDLKKCCNHPYLF--PVAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLK 1063
Query: 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVF 296
+ H+ L+FS M K+L+ +E+ E Y Y R+ G I R +A+ +FN G+ ++ F
Sbjct: 1064 EGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQF-CF 1122
Query: 297 LLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
LLSTRAGG G+NL ADT I+YDSDWNP DIQA +R HRIGQ K V IYR V+ ++ +
Sbjct: 1123 LLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE 1181
Score = 93 (37.8 bits), Expect = 6.1e-39, Sum P(2) = 6.1e-39
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H++L P LRRLK DV N+P K ++ + P Q+ Y +LT+
Sbjct: 946 LHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTR 992
>UNIPROTKB|F1SLR5 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016581 "NuRD complex" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1108 KO:K11643 OMA:ERMLLCR EMBL:CU914489 EMBL:GACC01000070
RefSeq:XP_003126577.3 UniGene:Ssc.25044 Ensembl:ENSSSCT00000000759
GeneID:100515610 KEGG:ssc:100515610 Uniprot:F1SLR5
Length = 1912
Score = 370 (135.3 bits), Expect = 6.1e-39, Sum P(2) = 6.1e-39
Identities = 77/179 (43%), Positives = 111/179 (62%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKE---MVCDENIVSSSGKMIVLNQLLHKLK 238
V + NV M L+ +HPYL P ++ K M ++ +SGK+++L ++L LK
Sbjct: 1006 VSLLNVVMDLKKCCNHPYLF--PVAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLK 1063
Query: 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVF 296
+ H+ L+FS M K+L+ +E+ E Y Y R+ G I R +A+ +FN G+ ++ F
Sbjct: 1064 EGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQF-CF 1122
Query: 297 LLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
LLSTRAGG G+NL ADT I+YDSDWNP DIQA +R HRIGQ K V IYR V+ ++ +
Sbjct: 1123 LLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE 1181
Score = 93 (37.8 bits), Expect = 6.1e-39, Sum P(2) = 6.1e-39
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H++L P LRRLK DV N+P K ++ + P Q+ Y +LT+
Sbjct: 946 LHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTR 992
>MGI|MGI:1344380 [details] [associations]
symbol:Chd4 "chromodomain helicase DNA binding protein 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001103 "RNA polymerase II repressing
transcription factor binding" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005813 "centrosome" evidence=ISO] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IPI] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=ISO;IDA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016818
"hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 MGI:MGI:1344380 Pfam:PF00385
GO:GO:0005524 GO:GO:0005737 GO:GO:0005813 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
GO:GO:0016568 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 PROSITE:PS00598
GeneTree:ENSGT00560000076896 HOGENOM:HOG000231124
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
HOVERGEN:HBG005326 CTD:1108 KO:K11643 OrthoDB:EOG4WH8JX
ChiTaRS:CHD4 EMBL:BC058578 IPI:IPI00396802 RefSeq:NP_666091.1
UniGene:Mm.333388 ProteinModelPortal:Q6PDQ2 SMR:Q6PDQ2
DIP:DIP-59651N IntAct:Q6PDQ2 STRING:Q6PDQ2 PhosphoSite:Q6PDQ2
PaxDb:Q6PDQ2 PRIDE:Q6PDQ2 Ensembl:ENSMUST00000056889 GeneID:107932
KEGG:mmu:107932 UCSC:uc009dtk.1 NextBio:359735 PMAP-CutDB:Q6PDQ2
Bgee:Q6PDQ2 CleanEx:MM_CHD4 Genevestigator:Q6PDQ2
GermOnline:ENSMUSG00000063870 Uniprot:Q6PDQ2
Length = 1915
Score = 370 (135.3 bits), Expect = 6.1e-39, Sum P(2) = 6.1e-39
Identities = 77/179 (43%), Positives = 111/179 (62%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKE---MVCDENIVSSSGKMIVLNQLLHKLK 238
V + NV M L+ +HPYL P ++ K M ++ +SGK+++L ++L LK
Sbjct: 999 VSLLNVVMDLKKCCNHPYLF--PVAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLK 1056
Query: 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVF 296
+ H+ L+FS M K+L+ +E+ E Y Y R+ G I R +A+ +FN G+ ++ F
Sbjct: 1057 EGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQF-CF 1115
Query: 297 LLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
LLSTRAGG G+NL ADT I+YDSDWNP DIQA +R HRIGQ K V IYR V+ ++ +
Sbjct: 1116 LLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE 1174
Score = 93 (37.8 bits), Expect = 6.1e-39, Sum P(2) = 6.1e-39
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H++L P LRRLK DV N+P K ++ + P Q+ Y +LT+
Sbjct: 939 LHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTR 985
>UNIPROTKB|E9PU01 [details] [associations]
symbol:Chd4 "Protein Chd4" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 RGD:620064 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI01016558 PRIDE:E9PU01 Ensembl:ENSRNOT00000055970
ArrayExpress:E9PU01 Uniprot:E9PU01
Length = 1915
Score = 370 (135.3 bits), Expect = 6.1e-39, Sum P(2) = 6.1e-39
Identities = 77/179 (43%), Positives = 111/179 (62%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKE---MVCDENIVSSSGKMIVLNQLLHKLK 238
V + NV M L+ +HPYL P ++ K M ++ +SGK+++L ++L LK
Sbjct: 999 VSLLNVVMDLKKCCNHPYLF--PVAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLK 1056
Query: 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVF 296
+ H+ L+FS M K+L+ +E+ E Y Y R+ G I R +A+ +FN G+ ++ F
Sbjct: 1057 EGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQF-CF 1115
Query: 297 LLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
LLSTRAGG G+NL ADT I+YDSDWNP DIQA +R HRIGQ K V IYR V+ ++ +
Sbjct: 1116 LLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE 1174
Score = 93 (37.8 bits), Expect = 6.1e-39, Sum P(2) = 6.1e-39
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H++L P LRRLK DV N+P K ++ + P Q+ Y +LT+
Sbjct: 939 LHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTR 985
>ZFIN|ZDB-GENE-041111-187 [details] [associations]
symbol:chd4a "chromodomain helicase DNA binding
protein 4a" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-041111-187
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:BX004850
IPI:IPI00962864 Ensembl:ENSDART00000005453 ArrayExpress:F1QWV5
Bgee:F1QWV5 Uniprot:F1QWV5
Length = 1930
Score = 376 (137.4 bits), Expect = 6.1e-39, Sum P(2) = 6.1e-39
Identities = 79/179 (44%), Positives = 112/179 (62%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKE---MVCDENIVSSSGKMIVLNQLLHKLK 238
V + NV M L+ +HPYL P ++ K M + SSGK+++L ++L KLK
Sbjct: 990 VSLLNVVMDLKKCCNHPYLF--PAAAMEAAKMPNGMYEGGGLTKSSGKLLLLQKMLRKLK 1047
Query: 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVF 296
+ H+ L+FS M K+L+ +E+ E Y Y R+ G I R +A+ +FN G+ ++ VF
Sbjct: 1048 EGGHRVLIFSQMTKMLDLLEDFLENEGYKYERIDGGITGGMRQEAIDRFNAPGAPQF-VF 1106
Query: 297 LLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
LLSTRAGG G+NL ADT ++YDSDWNP DIQA +R HRIGQ K V IYR V+ ++ +
Sbjct: 1107 LLSTRAGGLGINLATADTVVIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTKASVE 1165
Score = 87 (35.7 bits), Expect = 6.1e-39, Sum P(2) = 6.1e-39
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H++L P LRRLK DV ++P K ++ + P Q+ Y +LT+
Sbjct: 930 LHDMLGPHMLRRLKADVFKHMPSKTELIVRVELSPMQKKYYKFILTR 976
Score = 44 (20.5 bits), Expect = 2.0e-34, Sum P(2) = 2.0e-34
Identities = 22/98 (22%), Positives = 39/98 (39%)
Query: 82 SEESTLS---NASSVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERD 138
S EST + + K GK ++ +P+ +K K L F+S +R
Sbjct: 236 SPESTPAAPVRKAKTKEGKGPNARKKSKPAPKPQEKKVKTKKVAPLKIKLGGFNSKRKRS 295
Query: 139 DTSDTEVQVED-----KIKVEPCENSSNAQDVPSAEEK 171
+ + +V V+ I N SN++ S+ +K
Sbjct: 296 SSEEDDVDVDSDFDDGSINSVSVSNGSNSRSSRSSAKK 333
>UNIPROTKB|J9NW81 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:ERMLLCR EMBL:AAEX03015287 Ensembl:ENSCAFT00000048002
Uniprot:J9NW81
Length = 1932
Score = 370 (135.3 bits), Expect = 6.2e-39, Sum P(2) = 6.2e-39
Identities = 77/179 (43%), Positives = 111/179 (62%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKE---MVCDENIVSSSGKMIVLNQLLHKLK 238
V + NV M L+ +HPYL P ++ K M ++ +SGK+++L ++L LK
Sbjct: 1026 VSLLNVVMDLKKCCNHPYLF--PVAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLK 1083
Query: 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVF 296
+ H+ L+FS M K+L+ +E+ E Y Y R+ G I R +A+ +FN G+ ++ F
Sbjct: 1084 EGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQF-CF 1142
Query: 297 LLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
LLSTRAGG G+NL ADT I+YDSDWNP DIQA +R HRIGQ K V IYR V+ ++ +
Sbjct: 1143 LLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE 1201
Score = 93 (37.8 bits), Expect = 6.2e-39, Sum P(2) = 6.2e-39
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H++L P LRRLK DV N+P K ++ + P Q+ Y +LT+
Sbjct: 966 LHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTR 1012
>UNIPROTKB|F1N3F6 [details] [associations]
symbol:CHD4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016581 "NuRD complex" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0005813
"centrosome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005737 GO:GO:0005813 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:ERMLLCR EMBL:DAAA02014463 IPI:IPI00877578
Ensembl:ENSBTAT00000019612 ArrayExpress:F1N3F6 Uniprot:F1N3F6
Length = 1934
Score = 370 (135.3 bits), Expect = 6.2e-39, Sum P(2) = 6.2e-39
Identities = 77/179 (43%), Positives = 111/179 (62%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKE---MVCDENIVSSSGKMIVLNQLLHKLK 238
V + NV M L+ +HPYL P ++ K M ++ +SGK+++L ++L LK
Sbjct: 1028 VSLLNVVMDLKKCCNHPYLF--PVAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLK 1085
Query: 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVF 296
+ H+ L+FS M K+L+ +E+ E Y Y R+ G I R +A+ +FN G+ ++ F
Sbjct: 1086 EGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQF-CF 1144
Query: 297 LLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
LLSTRAGG G+NL ADT I+YDSDWNP DIQA +R HRIGQ K V IYR V+ ++ +
Sbjct: 1145 LLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE 1203
Score = 93 (37.8 bits), Expect = 6.2e-39, Sum P(2) = 6.2e-39
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H++L P LRRLK DV N+P K ++ + P Q+ Y +LT+
Sbjct: 968 LHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTR 1014
>UNIPROTKB|F1LM59 [details] [associations]
symbol:Chd4 "Protein Chd4" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 RGD:620064 GO:GO:0005524 GO:GO:0005737 GO:GO:0005813
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI00365698 PRIDE:F1LM59 Ensembl:ENSRNOT00000024864
ArrayExpress:F1LM59 Uniprot:F1LM59
Length = 1945
Score = 370 (135.3 bits), Expect = 6.3e-39, Sum P(2) = 6.3e-39
Identities = 77/179 (43%), Positives = 111/179 (62%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKE---MVCDENIVSSSGKMIVLNQLLHKLK 238
V + NV M L+ +HPYL P ++ K M ++ +SGK+++L ++L LK
Sbjct: 1027 VSLLNVVMDLKKCCNHPYLF--PVAAMEAPKMPNGMYDGSALIRASGKLLLLQKMLKNLK 1084
Query: 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVF 296
+ H+ L+FS M K+L+ +E+ E Y Y R+ G I R +A+ +FN G+ ++ F
Sbjct: 1085 EGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQF-CF 1143
Query: 297 LLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
LLSTRAGG G+NL ADT I+YDSDWNP DIQA +R HRIGQ K V IYR V+ ++ +
Sbjct: 1144 LLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE 1202
Score = 93 (37.8 bits), Expect = 6.3e-39, Sum P(2) = 6.3e-39
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H++L P LRRLK DV N+P K ++ + P Q+ Y +LT+
Sbjct: 967 LHDMLGPHMLRRLKADVFKNMPSKTELIVRVELSPMQKKYYKYILTR 1013
>UNIPROTKB|K7EMY3 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL031847 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:AL035406
HGNC:HGNC:16816 Ensembl:ENST00000462991 Uniprot:K7EMY3
Length = 1060
Score = 367 (134.2 bits), Expect = 1.4e-38, Sum P(2) = 1.4e-38
Identities = 77/179 (43%), Positives = 110/179 (61%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGK---KEMVCDENIVSSSGKMIVLNQLLHKLK 238
V + N+ M L+ +HPYL P V+ ++V SSGK+++L ++L KL+
Sbjct: 363 VSLLNIMMDLKKCCNHPYLF--PVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLR 420
Query: 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVF 296
H+ L+FS M K+L+ +E+ E Y Y R+ G I R +A+ +FN G+ ++ F
Sbjct: 421 DEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQF-CF 479
Query: 297 LLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
LLSTRAGG G+NL ADT I+YDSDWNP DIQA +R HRIGQ K V IYR V+ ++ +
Sbjct: 480 LLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE 538
Score = 85 (35.0 bits), Expect = 1.4e-38, Sum P(2) = 1.4e-38
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H++L P LRRLK DV N+P K ++ + Q+ Y +LT+
Sbjct: 303 LHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTR 349
>DICTYBASE|DDB_G0285205 [details] [associations]
symbol:snf2a "SNF2-related protein SNF2a"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 dictyBase:DDB_G0285205 GO:GO:0005524 GO:GO:0003677
EMBL:AAFI02000075 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K11647 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 RefSeq:XP_638342.2
ProteinModelPortal:Q54NM0 STRING:Q54NM0 PRIDE:Q54NM0
EnsemblProtists:DDB0233441 GeneID:8624967 KEGG:ddi:DDB_G0285205
OMA:HASKHRV Uniprot:Q54NM0
Length = 1604
Score = 359 (131.4 bits), Expect = 1.6e-38, Sum P(2) = 1.6e-38
Identities = 72/172 (41%), Positives = 111/172 (64%)
Query: 186 NVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTL 245
N+ L+ I +HPYL K E +E+++ +SGK ++Q+L K+ + H+ L
Sbjct: 908 NIVKQLQKICNHPYLF---------KDEWDINEDLIRTSGKFDTMDQILTKMHASKHRVL 958
Query: 246 VFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLSTRAG 303
+F+ M +V+N +EE L+ + + RL GS + EER V ++N S W +F+LST AG
Sbjct: 959 IFTQMTEVINLMEEYFSLKEWTFLRLDGSTKPEERAHLVVEWNRPDSPFW-IFVLSTHAG 1017
Query: 304 GQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
G G+NL ADT I++DSDWNPQ+D+QA+ RCHRIGQT V ++RL+S ++ +
Sbjct: 1018 GLGMNLQTADTVIIFDSDWNPQMDLQAQDRCHRIGQTNSVSVFRLISANSIE 1069
Score = 98 (39.6 bits), Expect = 1.6e-38, Sum P(2) = 1.6e-38
Identities = 21/45 (46%), Positives = 26/45 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVL 45
+H +L+ F LRRLK DV LP KK VI C M Q MY ++
Sbjct: 838 LHQVLRFFLLRRLKSDVESQLPDKKEKVIKCNMSALQIAMYRSLV 882
Score = 46 (21.3 bits), Expect = 4.6e-33, Sum P(2) = 4.6e-33
Identities = 7/30 (23%), Positives = 18/30 (60%)
Query: 135 IERDDTSDTEVQVEDKIKVEPCENSSNAQD 164
++R +D +++ED++ + +N+S D
Sbjct: 367 LQRKLRNDVSLEMEDQVLIRSIQNNSKGYD 396
>RGD|1311923 [details] [associations]
symbol:Chd3 "chromodomain helicase DNA binding protein 3"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005813 "centrosome" evidence=ISO]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISO]
[GO:0007051 "spindle organization" evidence=ISO] [GO:0016581 "NuRD
complex" evidence=ISO] [GO:0045111 "intermediate filament
cytoskeleton" evidence=ISO] [GO:0051297 "centrosome organization"
evidence=ISO] InterPro:IPR001841 InterPro:IPR009071
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326
IPI:IPI00369880 EMBL:AY903245 EMBL:AY903246 UniGene:Rn.232095
STRING:Q2KML1 UCSC:RGD:1311923 Genevestigator:Q2KML1 Uniprot:Q2KML1
Length = 1925
Score = 363 (132.8 bits), Expect = 2.7e-38, Sum P(2) = 2.7e-38
Identities = 76/179 (42%), Positives = 111/179 (62%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKK-EMVCDEN--IVSSSGKMIVLNQLLHKLK 238
V + N+ M L+ +HPYL P ++ K E ++ SSGK+++L ++L KLK
Sbjct: 972 VSLLNIMMDLKKCCNHPYLF--PVAAMESPKLPSGAYEGGALIKSSGKLLLLQKMLRKLK 1029
Query: 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVF 296
+ H+ L+FS M K+L+ +E+ E Y Y R+ G I R +A+ +FN G+ ++ F
Sbjct: 1030 EQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQF-CF 1088
Query: 297 LLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
LLSTRAGG G+NL ADT I++DSDWNP DIQA +R HRIGQ V IYR V+ ++ +
Sbjct: 1089 LLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1147
Score = 94 (38.1 bits), Expect = 2.7e-38, Sum P(2) = 2.7e-38
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H++L P LRRLK DV N+P K ++ + P Q+ Y +LT+
Sbjct: 912 LHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTR 958
Score = 38 (18.4 bits), Expect = 2.0e-32, Sum P(2) = 2.0e-32
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 24 KKTTVIDCPMVPAQE 38
KK V+ CP V +E
Sbjct: 312 KKKKVLGCPTVTGEE 326
>UNIPROTKB|F1LPP7 [details] [associations]
symbol:Chd3 "Protein Chd3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 IPI:IPI00369880
Ensembl:ENSRNOT00000057060 Uniprot:F1LPP7
Length = 2020
Score = 363 (132.8 bits), Expect = 3.0e-38, Sum P(2) = 3.0e-38
Identities = 76/179 (42%), Positives = 111/179 (62%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKK-EMVCDEN--IVSSSGKMIVLNQLLHKLK 238
V + N+ M L+ +HPYL P ++ K E ++ SSGK+++L ++L KLK
Sbjct: 1067 VSLLNIMMDLKKCCNHPYLF--PVAAMESPKLPSGAYEGGALIKSSGKLLLLQKMLRKLK 1124
Query: 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVF 296
+ H+ L+FS M K+L+ +E+ E Y Y R+ G I R +A+ +FN G+ ++ F
Sbjct: 1125 EQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQF-CF 1183
Query: 297 LLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
LLSTRAGG G+NL ADT I++DSDWNP DIQA +R HRIGQ V IYR V+ ++ +
Sbjct: 1184 LLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1242
Score = 94 (38.1 bits), Expect = 3.0e-38, Sum P(2) = 3.0e-38
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H++L P LRRLK DV N+P K ++ + P Q+ Y +LT+
Sbjct: 1007 LHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTR 1053
Score = 39 (18.8 bits), Expect = 1.8e-32, Sum P(2) = 1.8e-32
Identities = 8/38 (21%), Positives = 21/38 (55%)
Query: 138 DDTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEKNVDE 175
++ + E+ V ++ + E E ++V +A+E + +E
Sbjct: 4 EEEEEEEMVVSEEEEEEEEEGDEEEEEVEAADEDDEEE 41
Score = 38 (18.4 bits), Expect = 2.3e-32, Sum P(2) = 2.3e-32
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 24 KKTTVIDCPMVPAQE 38
KK V+ CP V +E
Sbjct: 407 KKKKVLGCPTVTGEE 421
>UNIPROTKB|F1M7Q0 [details] [associations]
symbol:Chd3 "Protein Chd3" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1311923 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:1.10.30.10 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR
IPI:IPI00959834 Ensembl:ENSRNOT00000012983 Uniprot:F1M7Q0
Length = 2054
Score = 363 (132.8 bits), Expect = 3.2e-38, Sum P(2) = 3.2e-38
Identities = 76/179 (42%), Positives = 111/179 (62%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKK-EMVCDEN--IVSSSGKMIVLNQLLHKLK 238
V + N+ M L+ +HPYL P ++ K E ++ SSGK+++L ++L KLK
Sbjct: 1067 VSLLNIMMDLKKCCNHPYLF--PVAAMESPKLPSGAYEGGALIKSSGKLLLLQKMLRKLK 1124
Query: 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVF 296
+ H+ L+FS M K+L+ +E+ E Y Y R+ G I R +A+ +FN G+ ++ F
Sbjct: 1125 EQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQF-CF 1183
Query: 297 LLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
LLSTRAGG G+NL ADT I++DSDWNP DIQA +R HRIGQ V IYR V+ ++ +
Sbjct: 1184 LLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1242
Score = 94 (38.1 bits), Expect = 3.2e-38, Sum P(2) = 3.2e-38
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H++L P LRRLK DV N+P K ++ + P Q+ Y +LT+
Sbjct: 1007 LHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTR 1053
Score = 39 (18.8 bits), Expect = 1.9e-32, Sum P(2) = 1.9e-32
Identities = 8/38 (21%), Positives = 21/38 (55%)
Query: 138 DDTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEKNVDE 175
++ + E+ V ++ + E E ++V +A+E + +E
Sbjct: 4 EEEEEEEMVVSEEEEEEEEEGDEEEEEVEAADEDDEEE 41
Score = 38 (18.4 bits), Expect = 2.4e-32, Sum P(2) = 2.4e-32
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 24 KKTTVIDCPMVPAQE 38
KK V+ CP V +E
Sbjct: 407 KKKKVLGCPTVTGEE 421
>ZFIN|ZDB-GENE-030131-4532 [details] [associations]
symbol:chd4b "chromodomain helicase DNA binding
protein 4b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-030131-4532
GO:GO:0005524 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 EMBL:BX511250
IPI:IPI00931161 RefSeq:XP_685699.4 UniGene:Dr.75373
Ensembl:ENSDART00000092902 Ensembl:ENSDART00000148389 GeneID:560622
KEGG:dre:560622 CTD:560622 NextBio:20883532 Uniprot:F1RBT2
Length = 1953
Score = 368 (134.6 bits), Expect = 3.5e-38, Sum P(2) = 3.5e-38
Identities = 78/179 (43%), Positives = 111/179 (62%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKE---MVCDENIVSSSGKMIVLNQLLHKLK 238
V + NV M L+ +HPYL P + K M + +SGK+++L ++L KLK
Sbjct: 1016 VSLLNVVMDLKKCCNHPYLF--PTAATEAPKMPNGMYDGSALTKASGKLMLLFKMLKKLK 1073
Query: 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVF 296
+ H+ L+FS M K+L+ +E+ E Y Y R+ G + R +A+ +FN G+ ++ VF
Sbjct: 1074 EGGHRVLIFSQMTKMLDLLEDFLENEGYKYERIDGGVTGGMRQEAIDRFNAPGAPQF-VF 1132
Query: 297 LLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
LLSTRAGG G+NL ADT I+YDSDWNP DIQA +R HRIGQ K V IYR V+ ++ +
Sbjct: 1133 LLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTKASVE 1191
Score = 88 (36.0 bits), Expect = 3.5e-38, Sum P(2) = 3.5e-38
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H++L P LRRLK DV ++P K ++ + P Q+ Y +LT+
Sbjct: 956 LHDMLGPHMLRRLKADVFKHMPSKTELIVRVELSPMQKKYYKYILTR 1002
>UNIPROTKB|Q12873 [details] [associations]
symbol:CHD3 "Chromodomain-helicase-DNA-binding protein 3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0004386 "helicase activity" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0008270
"zinc ion binding" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007051 "spindle organization" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0051297 "centrosome organization" evidence=IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=TAS] [GO:0016581 "NuRD complex" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR001841
InterPro:IPR009071 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005737 GO:GO:0005813
EMBL:CH471108 GO:GO:0005730 GO:GO:0051297 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
GO:GO:0016568 Gene3D:1.10.30.10 GO:GO:0045111 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004003
InterPro:IPR019786 PROSITE:PS01359
Pathway_Interaction_DB:hdac_classi_pathway InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007051 GO:GO:0016581 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOGENOM:HOG000231124
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1107 EMBL:U91543 EMBL:AF006515 EMBL:U08379 IPI:IPI00373870
IPI:IPI00411592 RefSeq:NP_001005271.2 RefSeq:NP_001005273.1
RefSeq:NP_005843.2 UniGene:Hs.25601 ProteinModelPortal:Q12873
SMR:Q12873 DIP:DIP-32496N IntAct:Q12873 MINT:MINT-1185641
STRING:Q12873 PhosphoSite:Q12873 DMDM:88911273 PaxDb:Q12873
PRIDE:Q12873 Ensembl:ENST00000330494 Ensembl:ENST00000358181
GeneID:1107 KEGG:hsa:1107 UCSC:uc002gje.2 UCSC:uc002gjf.2
GeneCards:GC17P007788 H-InvDB:HIX0013516 HGNC:HGNC:1918
HPA:HPA043368 MIM:602120 neXtProt:NX_Q12873 PharmGKB:PA26454
HOVERGEN:HBG005326 KO:K11642 PhylomeDB:Q12873 ChiTaRS:CHD3
GenomeRNAi:1107 NextBio:4590 ArrayExpress:Q12873 Bgee:Q12873
CleanEx:HS_CHD3 Genevestigator:Q12873 GermOnline:ENSG00000170004
Uniprot:Q12873
Length = 2000
Score = 362 (132.5 bits), Expect = 3.8e-38, Sum P(2) = 3.8e-38
Identities = 76/179 (42%), Positives = 111/179 (62%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKK-EMVCDEN--IVSSSGKMIVLNQLLHKLK 238
V + N+ M L+ +HPYL P ++ K E ++ SSGK+++L ++L KLK
Sbjct: 1016 VSLLNIMMDLKKCCNHPYLF--PVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLK 1073
Query: 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVF 296
+ H+ L+FS M K+L+ +E+ E Y Y R+ G I R +A+ +FN G+ ++ F
Sbjct: 1074 EQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQF-CF 1132
Query: 297 LLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
LLSTRAGG G+NL ADT I++DSDWNP DIQA +R HRIGQ V IYR V+ ++ +
Sbjct: 1133 LLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1191
Score = 94 (38.1 bits), Expect = 3.8e-38, Sum P(2) = 3.8e-38
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H++L P LRRLK DV N+P K ++ + P Q+ Y +LT+
Sbjct: 956 LHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTR 1002
Score = 38 (18.4 bits), Expect = 2.8e-32, Sum P(2) = 2.8e-32
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 24 KKTTVIDCPMVPAQE 38
KK V+ CP V +E
Sbjct: 355 KKKKVLGCPAVAGEE 369
>UNIPROTKB|E9PG89 [details] [associations]
symbol:CHD3 "Chromodomain-helicase-DNA-binding protein 3"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006333 "chromatin assembly or
disassembly" evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IDA] InterPro:IPR001841 InterPro:IPR009071
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR012957
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184
SMART:SM00249 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005730 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:1.10.30.10 GO:GO:0045111
GO:GO:0006333 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0016581 InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
CTD:1107 RefSeq:NP_001005271.2 UniGene:Hs.25601 GeneID:1107
KEGG:hsa:1107 HGNC:HGNC:1918 KO:K11642 ChiTaRS:CHD3 GenomeRNAi:1107
NextBio:4590 EMBL:AC104581 IPI:IPI00465222
ProteinModelPortal:E9PG89 SMR:E9PG89 PRIDE:E9PG89
Ensembl:ENST00000380358 UCSC:uc002gjd.2 OMA:EPEPGYR
ArrayExpress:E9PG89 Bgee:E9PG89 Uniprot:E9PG89
Length = 2059
Score = 362 (132.5 bits), Expect = 4.1e-38, Sum P(2) = 4.1e-38
Identities = 76/179 (42%), Positives = 111/179 (62%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKK-EMVCDEN--IVSSSGKMIVLNQLLHKLK 238
V + N+ M L+ +HPYL P ++ K E ++ SSGK+++L ++L KLK
Sbjct: 1075 VSLLNIMMDLKKCCNHPYLF--PVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLK 1132
Query: 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVF 296
+ H+ L+FS M K+L+ +E+ E Y Y R+ G I R +A+ +FN G+ ++ F
Sbjct: 1133 EQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQF-CF 1191
Query: 297 LLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
LLSTRAGG G+NL ADT I++DSDWNP DIQA +R HRIGQ V IYR V+ ++ +
Sbjct: 1192 LLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1250
Score = 94 (38.1 bits), Expect = 4.1e-38, Sum P(2) = 4.1e-38
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H++L P LRRLK DV N+P K ++ + P Q+ Y +LT+
Sbjct: 1015 LHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTR 1061
Score = 38 (18.4 bits), Expect = 3.0e-32, Sum P(2) = 3.0e-32
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 24 KKTTVIDCPMVPAQE 38
KK V+ CP V +E
Sbjct: 414 KKKKVLGCPAVAGEE 428
>CGD|CAL0000801 [details] [associations]
symbol:orf19.1720 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0006312 "mitotic
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
CGD:CAL0000801 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 RefSeq:XP_721671.1
RefSeq:XP_721791.1 ProteinModelPortal:Q5AJ72 GeneID:3636620
GeneID:3636670 KEGG:cal:CaO19.1720 KEGG:cal:CaO19.9288
Uniprot:Q5AJ72
Length = 864
Score = 416 (151.5 bits), Expect = 5.5e-38, P = 5.5e-38
Identities = 116/354 (32%), Positives = 179/354 (50%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTIGENREQVAEYF 60
+H ILKPF LRRLK DV NLPPKK ++ PM Q+ +Y + + ++ +
Sbjct: 401 LHTILKPFMLRRLKRDVIKNLPPKKEYLLHIPMTKLQKKIYYDAVNDKLFDSLVETNLKA 460
Query: 61 XXXXXXXXXXXXXXXXXYIWFSEESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNK 120
Y+ + + + R D N L + K + ++
Sbjct: 461 FIKFNHEELFNGFDVDEYLKTRRQRDSFMETGGLSKLRGSRSDRNSLKRSYK--EADSDE 518
Query: 121 TYDLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEKNVDEILHHV 180
+++ +D DS+ R +T T E +K+ ++ + Q + + +IL
Sbjct: 519 EFEI--MDAEDDSLTGRGNT--TPSYDEALVKIRHIKSKTKIQSI--LIDAIYQDILKEA 572
Query: 181 -NVKMTNVTMV-LRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLK 238
++K+ N+ M+ LRNI + P++ Y I+D ++ +S K VLNQLL L
Sbjct: 573 KHLKLQNLKMIQLRNICNSPFIYYN-YPILD-------QAEVIRNSAKFQVLNQLLPPLL 624
Query: 239 QTNHKTLVFSTMVKVLNFIE---ELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGV 295
+ HK L+F+ KVL+ +E E L + RL GS ++ R++ + QFN + ++ V
Sbjct: 625 SSGHKVLIFAQFTKVLDLLEDWLEESPLSHGKICRLDGSTNHQIRDEQISQFNNNPKFKV 684
Query: 296 FLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLV 349
FL STRAGG G+NL AADT IL D+DWNPQ+D+QA R HRIGQ PV I+R V
Sbjct: 685 FLSSTRAGGLGINLVAADTVILMDNDWNPQMDLQAIDRVHRIGQINPVKIFRFV 738
>UNIPROTKB|Q5AJ72 [details] [associations]
symbol:CaO19.1720 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0000801 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 EMBL:AACQ01000014 EMBL:AACQ01000013 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 RefSeq:XP_721671.1
RefSeq:XP_721791.1 ProteinModelPortal:Q5AJ72 GeneID:3636620
GeneID:3636670 KEGG:cal:CaO19.1720 KEGG:cal:CaO19.9288
Uniprot:Q5AJ72
Length = 864
Score = 416 (151.5 bits), Expect = 5.5e-38, P = 5.5e-38
Identities = 116/354 (32%), Positives = 179/354 (50%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTIGENREQVAEYF 60
+H ILKPF LRRLK DV NLPPKK ++ PM Q+ +Y + + ++ +
Sbjct: 401 LHTILKPFMLRRLKRDVIKNLPPKKEYLLHIPMTKLQKKIYYDAVNDKLFDSLVETNLKA 460
Query: 61 XXXXXXXXXXXXXXXXXYIWFSEESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNK 120
Y+ + + + R D N L + K + ++
Sbjct: 461 FIKFNHEELFNGFDVDEYLKTRRQRDSFMETGGLSKLRGSRSDRNSLKRSYK--EADSDE 518
Query: 121 TYDLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEKNVDEILHHV 180
+++ +D DS+ R +T T E +K+ ++ + Q + + +IL
Sbjct: 519 EFEI--MDAEDDSLTGRGNT--TPSYDEALVKIRHIKSKTKIQSI--LIDAIYQDILKEA 572
Query: 181 -NVKMTNVTMV-LRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLK 238
++K+ N+ M+ LRNI + P++ Y I+D ++ +S K VLNQLL L
Sbjct: 573 KHLKLQNLKMIQLRNICNSPFIYYN-YPILD-------QAEVIRNSAKFQVLNQLLPPLL 624
Query: 239 QTNHKTLVFSTMVKVLNFIE---ELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGV 295
+ HK L+F+ KVL+ +E E L + RL GS ++ R++ + QFN + ++ V
Sbjct: 625 SSGHKVLIFAQFTKVLDLLEDWLEESPLSHGKICRLDGSTNHQIRDEQISQFNNNPKFKV 684
Query: 296 FLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLV 349
FL STRAGG G+NL AADT IL D+DWNPQ+D+QA R HRIGQ PV I+R V
Sbjct: 685 FLSSTRAGGLGINLVAADTVILMDNDWNPQMDLQAIDRVHRIGQINPVKIFRFV 738
>TAIR|locus:2087780 [details] [associations]
symbol:PIE1 "PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009910 "negative regulation of flower development"
evidence=IGI] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0048441 "petal development" evidence=IGI] [GO:0048451 "petal
formation" evidence=IGI;RCA] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042742 "defense
response to bacterium" evidence=IGI;RCA] [GO:0046686 "response to
cadmium ion" evidence=IEP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0003002 "regionalization" evidence=RCA]
[GO:0006338 "chromatin remodeling" evidence=RCA] [GO:0007155 "cell
adhesion" evidence=RCA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0048765 "root hair cell differentiation" evidence=RCA]
[GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005618
GO:GO:0046686 EMBL:CP002686 GO:GO:0003677 GO:GO:0042742
GO:GO:0003682 Gene3D:1.10.10.60 GO:GO:0016514 GO:GO:0004386
GO:GO:0009910 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 KO:K11320 GO:GO:0048451
EMBL:AY279398 IPI:IPI00545059 RefSeq:NP_187887.3 UniGene:At.39549
SMR:Q7X9V2 IntAct:Q7X9V2 STRING:Q7X9V2 EnsemblPlants:AT3G12810.1
GeneID:820463 KEGG:ath:AT3G12810 TAIR:At3g12810 InParanoid:Q7X9V2
OMA:CCHPPPS ProtClustDB:CLSN2680833 Genevestigator:Q7X9V2
Uniprot:Q7X9V2
Length = 2055
Score = 341 (125.1 bits), Expect = 5.5e-38, Sum P(3) = 5.5e-38
Identities = 69/143 (48%), Positives = 93/143 (65%)
Query: 217 DENIVS-SSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSI 275
D ++ GK+ L LL KLK H+ L+F+ M K+L+ +E L Y Y RL GS
Sbjct: 1066 DRRLIQFDCGKLQELAMLLRKLKFGGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGST 1125
Query: 276 RNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCH 335
EER +Q+FN + + +F+LSTR+GG G+NL ADT I YDSDWNP +D QA+ RCH
Sbjct: 1126 PPEERQTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCH 1185
Query: 336 RIGQTKPVCIYRLVSHSTYQVHL 358
RIGQT+ V IYRL+S ST + ++
Sbjct: 1186 RIGQTREVHIYRLISESTIEENI 1208
Score = 102 (41.0 bits), Expect = 5.5e-38, Sum P(3) = 5.5e-38
Identities = 21/48 (43%), Positives = 27/48 (56%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKT 48
+HN+L+PF LRRLK DV LP K VI C + Q +Y + T
Sbjct: 747 LHNVLRPFLLRRLKRDVEKQLPSKHEHVIFCRLSKRQRNLYEDFIAST 794
Score = 46 (21.3 bits), Expect = 3.6e-32, Sum P(3) = 3.6e-32
Identities = 19/80 (23%), Positives = 31/80 (38%)
Query: 99 EQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDTEVQVEDKIK-VEPCE 157
E D + Q P S E+D +D E D+T D E +E+ K E
Sbjct: 181 ESKSDEERAEQIPPEINSSAGLESGSPELDEDYDLKSE-DETEDDEDTIEEDEKHFTKRE 239
Query: 158 NSSNAQDVPSAEEKNVDEIL 177
+ + + + V+E+L
Sbjct: 240 RQEELEALQNEVDLPVEELL 259
Score = 41 (19.5 bits), Expect = 2.4e-30, Sum P(2) = 2.4e-30
Identities = 28/146 (19%), Positives = 63/146 (43%)
Query: 79 IWFSEESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSM--IE 136
I + +S S + KR++T+++ + +P+R K T D + + M +
Sbjct: 12 IVMASKSGKSKPDNESRAKRQKTLEAPK---EPRRPK---------THWDHVLEEMAWLS 59
Query: 137 RDDTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEKNVDEILHHVNVKMTNVTMVLRNI-I 195
+D S+ + ++ KV S D S EE+ + E + N++ ++ +
Sbjct: 60 KDFESERKWKLAQAKKVA-LRASKGMLDQASREERKLKEEEQRLRKVALNISKDMKKFWM 118
Query: 196 SHPYLINKPYRIV-DGKKEMVCDENI 220
L+ +++V + KK+ D+ +
Sbjct: 119 KVEKLVLYKHQLVRNEKKKKAMDKQL 144
Score = 40 (19.1 bits), Expect = 1.5e-31, Sum P(3) = 1.5e-31
Identities = 7/52 (13%), Positives = 24/52 (46%)
Query: 121 TYDLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEKN 172
TYD + D ++ + D E + + ++ +N + +++ ++++
Sbjct: 363 TYDFNDEQEDVDFVLANGEEKDDEATLAVEEELAKADNEDHVEEIALLQKES 414
Score = 38 (18.4 bits), Expect = 5.5e-38, Sum P(3) = 5.5e-38
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 184 MTNVTMVLRNIISHPYL 200
M ++ M LR + +HP L
Sbjct: 808 MISIIMQLRKVCNHPDL 824
>UNIPROTKB|F1NH78 [details] [associations]
symbol:F1NH78 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:AADN02040929 EMBL:AADN02040930 IPI:IPI00571784
Ensembl:ENSGALT00000023340 ArrayExpress:F1NH78 Uniprot:F1NH78
Length = 1781
Score = 368 (134.6 bits), Expect = 5.6e-38, Sum P(2) = 5.6e-38
Identities = 79/179 (44%), Positives = 111/179 (62%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGK--KEMVCDEN-IVSSSGKMIVLNQLLHKLK 238
V + N+ M L+ +HPYL P V+ D N +V SSGK+++L ++L KL+
Sbjct: 912 VSLLNIMMDLKKCCNHPYLF--PVAAVEAPVLPNGSYDGNSLVKSSGKLMLLQKMLKKLR 969
Query: 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVF 296
H+ L+FS M K+L+ +E+ E Y Y R+ G I R +A+ +FN G+ ++ F
Sbjct: 970 DGGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQF-CF 1028
Query: 297 LLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
LLSTRAGG G+NL ADT I+YDSDWNP DIQA +R HRIGQ K V IYR V+ ++ +
Sbjct: 1029 LLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE 1087
Score = 85 (35.0 bits), Expect = 5.6e-38, Sum P(2) = 5.6e-38
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H++L P LRRLK DV N+P K ++ + Q+ Y +LT+
Sbjct: 852 LHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTR 898
Score = 48 (22.0 bits), Expect = 4.3e-34, Sum P(2) = 4.3e-34
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 138 DDTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEK 171
D+ SD + ++E+K + E + S N + +EK
Sbjct: 4 DEISDNDEEIEEKSESEGSDYSPNKKKKKKLKEK 37
>UNIPROTKB|F1SSZ2 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
EMBL:FP102454 Ensembl:ENSSSCT00000019561 Uniprot:F1SSZ2
Length = 1667
Score = 367 (134.2 bits), Expect = 6.0e-38, Sum P(2) = 6.0e-38
Identities = 77/179 (43%), Positives = 110/179 (61%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGK---KEMVCDENIVSSSGKMIVLNQLLHKLK 238
V + N+ M L+ +HPYL P V+ ++V SSGK+++L ++L KL+
Sbjct: 896 VSLLNIMMDLKKCCNHPYLF--PVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLR 953
Query: 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVF 296
H+ L+FS M K+L+ +E+ E Y Y R+ G I R +A+ +FN G+ ++ F
Sbjct: 954 DEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQF-CF 1012
Query: 297 LLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
LLSTRAGG G+NL ADT I+YDSDWNP DIQA +R HRIGQ K V IYR V+ ++ +
Sbjct: 1013 LLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE 1071
Score = 85 (35.0 bits), Expect = 6.0e-38, Sum P(2) = 6.0e-38
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H++L P LRRLK DV N+P K ++ + Q+ Y +LT+
Sbjct: 836 LHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTR 882
>UNIPROTKB|F1RIM3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:FP102454 Ensembl:ENSSSCT00000003736 Uniprot:F1RIM3
Length = 1723
Score = 367 (134.2 bits), Expect = 6.5e-38, Sum P(2) = 6.5e-38
Identities = 77/179 (43%), Positives = 110/179 (61%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGK---KEMVCDENIVSSSGKMIVLNQLLHKLK 238
V + N+ M L+ +HPYL P V+ ++V SSGK+++L ++L KL+
Sbjct: 912 VSLLNIMMDLKKCCNHPYLF--PVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLR 969
Query: 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVF 296
H+ L+FS M K+L+ +E+ E Y Y R+ G I R +A+ +FN G+ ++ F
Sbjct: 970 DEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQF-CF 1028
Query: 297 LLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
LLSTRAGG G+NL ADT I+YDSDWNP DIQA +R HRIGQ K V IYR V+ ++ +
Sbjct: 1029 LLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE 1087
Score = 85 (35.0 bits), Expect = 6.5e-38, Sum P(2) = 6.5e-38
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H++L P LRRLK DV N+P K ++ + Q+ Y +LT+
Sbjct: 852 LHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTR 898
Score = 40 (19.1 bits), Expect = 3.4e-33, Sum P(2) = 3.4e-33
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 138 DDTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEK 171
D+ S+ E +E+K + E + S N + ++K
Sbjct: 5 DELSENEEDLEEKSESEGSDYSPNKKKKKKLKDK 38
>ZFIN|ZDB-GENE-040426-892 [details] [associations]
symbol:chd1l "chromodomain helicase DNA binding
protein 1-like" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA;ISS]
[GO:0000166 "nucleotide binding" evidence=IEA;ISS] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 InterPro:IPR001357
ZFIN:ZDB-GENE-040426-892 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 GO:GO:0004386 SUPFAM:SSF52113 PROSITE:PS50172
HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154 CTD:9557
HOGENOM:HOG000030789 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV
EMBL:BC050498 IPI:IPI00482841 RefSeq:NP_956607.1 UniGene:Dr.84280
ProteinModelPortal:Q7ZU90 PRIDE:Q7ZU90 GeneID:393283
KEGG:dre:393283 InParanoid:Q7ZU90 NextBio:20814340
ArrayExpress:Q7ZU90 Uniprot:Q7ZU90
Length = 1026
Score = 365 (133.5 bits), Expect = 6.8e-38, Sum P(2) = 6.8e-38
Identities = 76/178 (42%), Positives = 115/178 (64%)
Query: 183 KMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNH 242
++ NV M LR + HPYL + + EM E++V +SGK+ +L+ +L L++ H
Sbjct: 299 RLLNVLMQLRKCVDHPYLFDG---VEPEPFEM--GEHLVEASGKLSLLDSMLAYLQEGGH 353
Query: 243 KTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRA 302
L+FS M ++L+ +++ Y+Y RL GS+R EERN A++ F+ + +FLLST+A
Sbjct: 354 HVLLFSQMTRMLDILQDYLEYRGYSYERLDGSVRGEERNLAIKNFSTKDVF-IFLLSTKA 412
Query: 303 GGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFT 360
GG G+NLTAADT I D D+NPQ D+QA AR HRIGQT+PV + RL+ T + +++
Sbjct: 413 GGVGMNLTAADTVIFVDGDFNPQNDLQAAARAHRIGQTRPVKVIRLLGRDTIEEIIYS 470
Score = 80 (33.2 bits), Expect = 6.8e-38, Sum P(2) = 6.8e-38
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +L+PF LRR+K +V LP K V+ + Q+ Y +L + +
Sbjct: 239 LHQVLQPFLLRRVKAEVAAELPKKTELVVFHGLSALQKRYYKAILMRDL 287
>CGD|CAL0001390 [details] [associations]
symbol:orf19.3035 species:5476 "Candida albicans" [GO:0000124
"SAGA complex" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0046695 "SLIK (SAGA-like)
complex" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0030874 "nucleolar chromatin" evidence=IEA] [GO:2000616
"negative regulation of histone H3-K9 acetylation" evidence=IEA]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IEA] [GO:0071441 "negative regulation of histone H3-K14
acetylation" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IEA] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IEA] [GO:0060303 "regulation
of nucleosome density" evidence=IEA] [GO:0006200 "ATP catabolic
process" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:2000104 "negative regulation of
DNA-dependent DNA replication" evidence=IEA] [GO:0042766
"nucleosome mobilization" evidence=IEA] [GO:0001178 "regulation of
transcriptional start site selection at RNA polymerase II promoter"
evidence=IEA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IEA] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IEA] [GO:0000182 "rDNA
binding" evidence=IEA] [GO:0031490 "chromatin DNA binding"
evidence=IEA] [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 CGD:CAL0001390
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 EMBL:AACQ01000017
EMBL:AACQ01000015 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907 KO:K11367
RefSeq:XP_721262.1 RefSeq:XP_721533.1 ProteinModelPortal:Q5AI17
STRING:Q5AI17 GeneID:3636889 GeneID:3637077 KEGG:cal:CaO19.10553
KEGG:cal:CaO19.3035 Uniprot:Q5AI17
Length = 1410
Score = 372 (136.0 bits), Expect = 7.4e-38, Sum P(2) = 7.4e-38
Identities = 78/180 (43%), Positives = 112/180 (62%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDEN----IVSSSGKMIVLNQLLHKL 237
+ + N+ L+ +HPYL + V K EN IV SSGKM++L QLL +L
Sbjct: 627 ISLLNIMSELKKASNHPYLFDGAEDKVLDKAGSPSRENTLKGIVMSSGKMVLLEQLLSRL 686
Query: 238 KQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGV 295
++ H+ L+FS MV++L+ + + ++ Y + RL G++ + +R A+ FN GS ++
Sbjct: 687 RKEGHRVLIFSQMVRMLDILGDYMFIKGYQFQRLDGTVPSSKRKIAIDHFNAPGSKDFA- 745
Query: 296 FLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
FLLSTRAGG G+NL ADT I++DSDWNPQ D+QA AR HRIGQ V +YR VS T +
Sbjct: 746 FLLSTRAGGLGINLMTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVSVYRFVSKDTVE 805
Score = 77 (32.2 bits), Expect = 7.4e-38, Sum P(2) = 7.4e-38
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 5 LKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+ PF LRRLK DV +LP K ++ + Q Y ++TK
Sbjct: 571 ISPFILRRLKKDVEKSLPSKSERILRVELSDIQTEYYKNIITK 613
>UNIPROTKB|E2R1M3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:AAEX03003895 EMBL:AAEX03003896 EMBL:AAEX03003897
Ensembl:ENSCAFT00000031086 Uniprot:E2R1M3
Length = 1812
Score = 367 (134.2 bits), Expect = 7.5e-38, Sum P(2) = 7.5e-38
Identities = 77/179 (43%), Positives = 110/179 (61%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGK---KEMVCDENIVSSSGKMIVLNQLLHKLK 238
V + N+ M L+ +HPYL P V+ ++V SSGK+++L ++L KL+
Sbjct: 843 VSLLNIMMDLKKCCNHPYLF--PVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLR 900
Query: 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVF 296
H+ L+FS M K+L+ +E+ E Y Y R+ G I R +A+ +FN G+ ++ F
Sbjct: 901 DEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQF-CF 959
Query: 297 LLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
LLSTRAGG G+NL ADT I+YDSDWNP DIQA +R HRIGQ K V IYR V+ ++ +
Sbjct: 960 LLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE 1018
Score = 85 (35.0 bits), Expect = 7.5e-38, Sum P(2) = 7.5e-38
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H++L P LRRLK DV N+P K ++ + Q+ Y +LT+
Sbjct: 783 LHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTR 829
>UNIPROTKB|F1N544 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR EMBL:DAAA02048806
IPI:IPI00716282 Ensembl:ENSBTAT00000019119 ArrayExpress:F1N544
Uniprot:F1N544
Length = 1998
Score = 359 (131.4 bits), Expect = 7.8e-38, Sum P(2) = 7.8e-38
Identities = 75/179 (41%), Positives = 111/179 (62%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKK-EMVCDEN--IVSSSGKMIVLNQLLHKLK 238
V + N+ M L+ +HPYL P ++ K E ++ +SGK+++L ++L KLK
Sbjct: 1012 VSLLNIMMDLKKCCNHPYLF--PVAAMESPKLPSGAYEGGALIKASGKLMLLQKMLRKLK 1069
Query: 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVF 296
+ H+ L+FS M K+L+ +E+ E Y Y R+ G I R +A+ +FN G+ ++ F
Sbjct: 1070 EQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAHGAQQF-CF 1128
Query: 297 LLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
LLSTRAGG G+NL ADT I++DSDWNP DIQA +R HRIGQ V IYR V+ ++ +
Sbjct: 1129 LLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1187
Score = 94 (38.1 bits), Expect = 7.8e-38, Sum P(2) = 7.8e-38
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H++L P LRRLK DV N+P K ++ + P Q+ Y +LT+
Sbjct: 952 LHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTR 998
Score = 38 (18.4 bits), Expect = 5.8e-32, Sum P(2) = 5.8e-32
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 24 KKTTVIDCPMVPAQE 38
KK V+ CP V +E
Sbjct: 351 KKKKVLGCPAVAGEE 365
>UNIPROTKB|E2RTI2 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 OMA:EPEPGYR EMBL:AAEX03003635
EMBL:AAEX03003636 Ensembl:ENSCAFT00000026729 Uniprot:E2RTI2
Length = 1998
Score = 359 (131.4 bits), Expect = 7.8e-38, Sum P(2) = 7.8e-38
Identities = 75/179 (41%), Positives = 111/179 (62%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKK-EMVCDEN--IVSSSGKMIVLNQLLHKLK 238
V + N+ M L+ +HPYL P ++ K E ++ +SGK+++L ++L KLK
Sbjct: 1014 VSLLNIMMDLKKCCNHPYLF--PVAAMESPKLPSGAYEGGALIKASGKLMLLQKMLRKLK 1071
Query: 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVF 296
+ H+ L+FS M K+L+ +E+ E Y Y R+ G I R +A+ +FN G+ ++ F
Sbjct: 1072 EQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQF-CF 1130
Query: 297 LLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
LLSTRAGG G+NL ADT I++DSDWNP DIQA +R HRIGQ V IYR V+ ++ +
Sbjct: 1131 LLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1189
Score = 94 (38.1 bits), Expect = 7.8e-38, Sum P(2) = 7.8e-38
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H++L P LRRLK DV N+P K ++ + P Q+ Y +LT+
Sbjct: 954 LHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTR 1000
Score = 38 (18.4 bits), Expect = 5.8e-32, Sum P(2) = 5.8e-32
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 24 KKTTVIDCPMVPAQE 38
KK V+ CP V +E
Sbjct: 354 KKRKVLGCPTVAGEE 368
>UNIPROTKB|F1ST12 [details] [associations]
symbol:CHD3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0016581 "NuRD complex" evidence=IEA] [GO:0006333
"chromatin assembly or disassembly" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR009071 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:1.10.30.10 GO:GO:0006333 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0016581 InterPro:IPR023780
GeneTree:ENSGT00560000076896 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 CTD:1107 KO:K11642 OMA:EPEPGYR
EMBL:CU972380 RefSeq:XP_003132000.1 UniGene:Ssc.1663
Ensembl:ENSSSCT00000019548 GeneID:100188906 KEGG:ssc:100188906
Uniprot:F1ST12
Length = 2002
Score = 359 (131.4 bits), Expect = 7.8e-38, Sum P(2) = 7.8e-38
Identities = 75/179 (41%), Positives = 111/179 (62%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKK-EMVCDEN--IVSSSGKMIVLNQLLHKLK 238
V + N+ M L+ +HPYL P ++ K E ++ +SGK+++L ++L KLK
Sbjct: 1016 VSLLNIMMDLKKCCNHPYLF--PVAAMESPKLPSGAYEGGALIKASGKLMLLQKMLRKLK 1073
Query: 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVF 296
+ H+ L+FS M K+L+ +E+ E Y Y R+ G I R +A+ +FN G+ ++ F
Sbjct: 1074 EQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQF-CF 1132
Query: 297 LLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
LLSTRAGG G+NL ADT I++DSDWNP DIQA +R HRIGQ V IYR V+ ++ +
Sbjct: 1133 LLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASVE 1191
Score = 94 (38.1 bits), Expect = 7.8e-38, Sum P(2) = 7.8e-38
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H++L P LRRLK DV N+P K ++ + P Q+ Y +LT+
Sbjct: 956 LHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSPMQKKYYKYILTR 1002
Score = 38 (18.4 bits), Expect = 5.8e-32, Sum P(2) = 5.8e-32
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 24 KKTTVIDCPMVPAQE 38
KK V+ CP V +E
Sbjct: 355 KKKKVLGCPAVAGEE 369
>UNIPROTKB|F1MFF9 [details] [associations]
symbol:Bt.62145 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.40.10
InterPro:IPR011011 InterPro:IPR013083 SUPFAM:SSF57903
InterPro:IPR019786 PROSITE:PS01359 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR023780 GeneTree:ENSGT00560000076896
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
OMA:KRIDDGD EMBL:DAAA02043090 IPI:IPI00688794
Ensembl:ENSBTAT00000010688 Uniprot:F1MFF9
Length = 1852
Score = 367 (134.2 bits), Expect = 8.0e-38, Sum P(2) = 8.0e-38
Identities = 77/179 (43%), Positives = 110/179 (61%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGK---KEMVCDENIVSSSGKMIVLNQLLHKLK 238
V + N+ M L+ +HPYL P V+ ++V SSGK+++L ++L KL+
Sbjct: 926 VSLLNIMMDLKKCCNHPYLF--PVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLR 983
Query: 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVF 296
H+ L+FS M K+L+ +E+ E Y Y R+ G I R +A+ +FN G+ ++ F
Sbjct: 984 DEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQF-CF 1042
Query: 297 LLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
LLSTRAGG G+NL ADT I+YDSDWNP DIQA +R HRIGQ K V IYR V+ ++ +
Sbjct: 1043 LLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE 1101
Score = 85 (35.0 bits), Expect = 8.0e-38, Sum P(2) = 8.0e-38
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H++L P LRRLK DV N+P K ++ + Q+ Y +LT+
Sbjct: 866 LHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTR 912
Score = 40 (19.1 bits), Expect = 4.2e-33, Sum P(2) = 4.2e-33
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 138 DDTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEK 171
D+ S+ E +E+K + E + S N + ++K
Sbjct: 3 DELSENEEDLEEKSESEGSDYSPNKKKKKKLKDK 36
>UNIPROTKB|O14646 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0035064 "methylated histone residue
binding" evidence=IDA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=TAS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0006357 GO:GO:0006351 GO:GO:0006338
GO:GO:0004003 GO:GO:0035064 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
HOVERGEN:HBG005325 InterPro:IPR025260 Pfam:PF13907 CTD:1105
KO:K11367 EMBL:AF006513 EMBL:AC022121 EMBL:BC117134 IPI:IPI00297851
IPI:IPI00954192 RefSeq:NP_001261.2 UniGene:Hs.643465 PDB:2B2T
PDB:2B2U PDB:2B2V PDB:2B2W PDB:2B2Y PDB:4B4C PDBsum:2B2T
PDBsum:2B2U PDBsum:2B2V PDBsum:2B2W PDBsum:2B2Y PDBsum:4B4C
ProteinModelPortal:O14646 SMR:O14646 IntAct:O14646 STRING:O14646
PhosphoSite:O14646 PaxDb:O14646 PRIDE:O14646
Ensembl:ENST00000284049 GeneID:1105 KEGG:hsa:1105 UCSC:uc003knf.3
GeneCards:GC05M098219 H-InvDB:HIX0005061 HGNC:HGNC:1915
HPA:HPA022236 MIM:602118 neXtProt:NX_O14646 PharmGKB:PA26451
HOGENOM:HOG000207917 InParanoid:O14646 OMA:AETHENE
OrthoDB:EOG4PG601 PhylomeDB:O14646 DrugBank:DB00445
EvolutionaryTrace:O14646 GenomeRNAi:1105 NextBio:4580
ArrayExpress:O14646 Bgee:O14646 CleanEx:HS_CHD1
Genevestigator:O14646 GermOnline:ENSG00000153922 Uniprot:O14646
Length = 1710
Score = 367 (134.2 bits), Expect = 8.2e-38, Sum P(2) = 8.2e-38
Identities = 77/173 (44%), Positives = 116/173 (67%)
Query: 186 NVTMVLRNIISHPYLINKP-YRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKT 244
N+ M L+ +H YLI P K+E + ++++ SSGK+I+L++LL +L++ ++
Sbjct: 750 NIMMELKKCCNHCYLIKPPDNNEFYNKQEAL--QHLIRSSGKLILLDKLLIRLRERGNRV 807
Query: 245 LVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLSTRA 302
L+FS MV++L+ + E + + RL GSI+ E R A+ FN GS ++ FLLSTRA
Sbjct: 808 LIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDF-CFLLSTRA 866
Query: 303 GGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
GG G+NL +ADT +++DSDWNPQ D+QA+AR HRIGQ K V IYRLV+ + +
Sbjct: 867 GGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVE 919
Score = 84 (34.6 bits), Expect = 8.2e-38, Sum P(2) = 8.2e-38
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H L+PF LRR+K DV +LP K ++ M Q+ Y +LT+
Sbjct: 686 LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTR 732
Score = 43 (20.2 bits), Expect = 1.6e-33, Sum P(2) = 1.6e-33
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 109 QQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSD 142
++P+ R S N L + R DS E DD D
Sbjct: 191 RKPQNRSKSKNGKKILGQKKRQIDSSEEDDDEED 224
>UNIPROTKB|E2QUI5 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 CTD:1105
GeneTree:ENSGT00560000076896 KO:K11367 EMBL:AAEX03002026
RefSeq:XP_848459.1 Ensembl:ENSCAFT00000012332 GeneID:488891
KEGG:cfa:488891 NextBio:20862162 Uniprot:E2QUI5
Length = 1711
Score = 367 (134.2 bits), Expect = 8.2e-38, Sum P(2) = 8.2e-38
Identities = 77/173 (44%), Positives = 116/173 (67%)
Query: 186 NVTMVLRNIISHPYLINKP-YRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKT 244
N+ M L+ +H YLI P K+E + ++++ SSGK+I+L++LL +L++ ++
Sbjct: 749 NIMMELKKCCNHCYLIKPPDNNEFYNKQEAL--QHLIRSSGKLILLDKLLIRLRERGNRV 806
Query: 245 LVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLSTRA 302
L+FS MV++L+ + E + + RL GSI+ E R A+ FN GS ++ FLLSTRA
Sbjct: 807 LIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDF-CFLLSTRA 865
Query: 303 GGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
GG G+NL +ADT +++DSDWNPQ D+QA+AR HRIGQ K V IYRLV+ + +
Sbjct: 866 GGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVE 918
Score = 84 (34.6 bits), Expect = 8.2e-38, Sum P(2) = 8.2e-38
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H L+PF LRR+K DV +LP K ++ M Q+ Y +LT+
Sbjct: 685 LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTR 731
Score = 42 (19.8 bits), Expect = 2.1e-33, Sum P(2) = 2.1e-33
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 109 QQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSD 142
++P+ R + N L + R DS E DD D
Sbjct: 190 RKPQNRSKAKNGKKILGQKKRQIDSSEEEDDEED 223
Score = 37 (18.1 bits), Expect = 6.9e-33, Sum P(2) = 6.9e-33
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 136 ERDDTS--DTEVQVE--DKIKVEPCENSSNAQD 164
ERD +S +TE E +K+K +N S A++
Sbjct: 168 ERDKSSCDETESDYEPKNKVKSRKPQNRSKAKN 200
>MGI|MGI:88393 [details] [associations]
symbol:Chd1 "chromodomain helicase DNA binding protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=NAS] [GO:0004386 "helicase activity"
evidence=NAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=NAS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=NAS]
[GO:0006338 "chromatin remodeling" evidence=IGI] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 MGI:MGI:88393 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0003682 GO:GO:0006338 GO:GO:0006333
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 CTD:1105
GeneTree:ENSGT00560000076896 KO:K11367 HOGENOM:HOG000207917
OMA:AETHENE OrthoDB:EOG4PG601 EMBL:L10410 EMBL:CH466630
EMBL:BC115822 IPI:IPI00107999 PIR:A47392 RefSeq:NP_031716.2
UniGene:Mm.8137 ProteinModelPortal:P40201 SMR:P40201 IntAct:P40201
STRING:P40201 PhosphoSite:P40201 PaxDb:P40201 PRIDE:P40201
Ensembl:ENSMUST00000024627 GeneID:12648 KEGG:mmu:12648
InParanoid:Q14BJ0 NextBio:281852 Bgee:P40201 CleanEx:MM_CHD1
Genevestigator:P40201 GermOnline:ENSMUSG00000023852 Uniprot:P40201
Length = 1711
Score = 367 (134.2 bits), Expect = 8.2e-38, Sum P(2) = 8.2e-38
Identities = 77/173 (44%), Positives = 116/173 (67%)
Query: 186 NVTMVLRNIISHPYLINKP-YRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKT 244
N+ M L+ +H YLI P K+E + ++++ SSGK+I+L++LL +L++ ++
Sbjct: 748 NIMMELKKCCNHCYLIKPPDNNEFYNKQEAL--QHLIRSSGKLILLDKLLIRLRERGNRV 805
Query: 245 LVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLSTRA 302
L+FS MV++L+ + E + + RL GSI+ E R A+ FN GS ++ FLLSTRA
Sbjct: 806 LIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDF-CFLLSTRA 864
Query: 303 GGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
GG G+NL +ADT +++DSDWNPQ D+QA+AR HRIGQ K V IYRLV+ + +
Sbjct: 865 GGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVE 917
Score = 84 (34.6 bits), Expect = 8.2e-38, Sum P(2) = 8.2e-38
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H L+PF LRR+K DV +LP K ++ M Q+ Y +LT+
Sbjct: 684 LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTR 730
Score = 37 (18.1 bits), Expect = 6.9e-33, Sum P(2) = 6.9e-33
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 109 QQPKRRKCSLNKTYDLTEIDRMFDSMIERDD 139
++P+ R S N L + R DS + DD
Sbjct: 190 RKPQNRSKSKNGKKILGQKKRQIDSSEDEDD 220
>RGD|1582725 [details] [associations]
symbol:Chd5 "chromodomain helicase DNA binding protein 5"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR002464 InterPro:IPR012957 InterPro:IPR012958
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
Pfam:PF08073 Pfam:PF08074 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1582725 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 OrthoDB:EOG4WH8JX
IPI:IPI00948282 Ensembl:ENSRNOT00000067364 UCSC:RGD:1582725
ArrayExpress:D4A5U0 Uniprot:D4A5U0
Length = 1940
Score = 367 (134.2 bits), Expect = 9.0e-38, Sum P(2) = 9.0e-38
Identities = 77/179 (43%), Positives = 110/179 (61%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGK---KEMVCDENIVSSSGKMIVLNQLLHKLK 238
V + N+ M L+ +HPYL P V+ ++V SSGK+++L ++L KL+
Sbjct: 978 VSLLNIMMDLKKCCNHPYLF--PVAAVEAPMLPNGSYDGSSLVKSSGKLMLLQKMLKKLR 1035
Query: 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVF 296
H+ L+FS M K+L+ +E+ E Y Y R+ G I R +A+ +FN G+ ++ F
Sbjct: 1036 DEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQF-CF 1094
Query: 297 LLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
LLSTRAGG G+NL ADT I+YDSDWNP DIQA +R HRIGQ K V IYR V+ ++ +
Sbjct: 1095 LLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE 1153
Score = 85 (35.0 bits), Expect = 9.0e-38, Sum P(2) = 9.0e-38
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H++L P LRRLK DV N+P K ++ + Q+ Y +LT+
Sbjct: 918 LHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTR 964
Score = 37 (18.1 bits), Expect = 9.8e-33, Sum P(2) = 9.8e-33
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 138 DDTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEK 171
D+ S+ E +E+K + E + S + +EK
Sbjct: 72 DELSENEEDLEEKSESEGSDYSPTKKKKKKLKEK 105
>UNIPROTKB|J9P6Y8 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AETHENE EMBL:AAEX03002026 Ensembl:ENSCAFT00000043995
Uniprot:J9P6Y8
Length = 1782
Score = 367 (134.2 bits), Expect = 9.1e-38, Sum P(2) = 9.1e-38
Identities = 77/173 (44%), Positives = 116/173 (67%)
Query: 186 NVTMVLRNIISHPYLINKP-YRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKT 244
N+ M L+ +H YLI P K+E + ++++ SSGK+I+L++LL +L++ ++
Sbjct: 732 NIMMELKKCCNHCYLIKPPDNNEFYNKQEAL--QHLIRSSGKLILLDKLLIRLRERGNRV 789
Query: 245 LVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLSTRA 302
L+FS MV++L+ + E + + RL GSI+ E R A+ FN GS ++ FLLSTRA
Sbjct: 790 LIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDF-CFLLSTRA 848
Query: 303 GGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
GG G+NL +ADT +++DSDWNPQ D+QA+AR HRIGQ K V IYRLV+ + +
Sbjct: 849 GGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVE 901
Score = 84 (34.6 bits), Expect = 9.1e-38, Sum P(2) = 9.1e-38
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H L+PF LRR+K DV +LP K ++ M Q+ Y +LT+
Sbjct: 668 LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTR 714
Score = 42 (19.8 bits), Expect = 2.3e-33, Sum P(2) = 2.3e-33
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 109 QQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSD 142
++P+ R + N L + R DS E DD D
Sbjct: 173 RKPQNRSKAKNGKKILGQKKRQIDSSEEEDDEED 206
Score = 37 (18.1 bits), Expect = 7.8e-33, Sum P(2) = 7.8e-33
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 136 ERDDTS--DTEVQVE--DKIKVEPCENSSNAQD 164
ERD +S +TE E +K+K +N S A++
Sbjct: 151 ERDKSSCDETESDYEPKNKVKSRKPQNRSKAKN 183
>UNIPROTKB|Q8TDI0 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
EMBL:AF425231 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 GO:GO:0016568 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AL031847
GO:GO:0008026 InterPro:IPR023780 PROSITE:PS00598
HOGENOM:HOG000231124 InterPro:IPR009462 InterPro:IPR009463
Pfam:PF06461 Pfam:PF06465 HOVERGEN:HBG005326 OrthoDB:EOG4WH8JX
EMBL:AL035406 EMBL:AL117491 EMBL:AB007913 IPI:IPI00152535
PIR:T17269 RefSeq:NP_056372.1 UniGene:Hs.522898
ProteinModelPortal:Q8TDI0 SMR:Q8TDI0 IntAct:Q8TDI0 STRING:Q8TDI0
PhosphoSite:Q8TDI0 DMDM:51701343 PaxDb:Q8TDI0 PRIDE:Q8TDI0
DNASU:26038 Ensembl:ENST00000262450 GeneID:26038 KEGG:hsa:26038
UCSC:uc001amb.2 CTD:26038 GeneCards:GC01M006096 HGNC:HGNC:16816
HPA:HPA015809 MIM:610771 neXtProt:NX_Q8TDI0 PharmGKB:PA134969178
InParanoid:Q8TDI0 KO:K14435 OMA:KRIDDGD PhylomeDB:Q8TDI0
ChiTaRS:CHD5 GenomeRNAi:26038 NextBio:47863 ArrayExpress:Q8TDI0
Bgee:Q8TDI0 CleanEx:HS_CHD5 Genevestigator:Q8TDI0
GermOnline:ENSG00000116254 Uniprot:Q8TDI0
Length = 1954
Score = 367 (134.2 bits), Expect = 9.2e-38, Sum P(2) = 9.2e-38
Identities = 77/179 (43%), Positives = 110/179 (61%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGK---KEMVCDENIVSSSGKMIVLNQLLHKLK 238
V + N+ M L+ +HPYL P V+ ++V SSGK+++L ++L KL+
Sbjct: 980 VSLLNIMMDLKKCCNHPYLF--PVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLR 1037
Query: 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVF 296
H+ L+FS M K+L+ +E+ E Y Y R+ G I R +A+ +FN G+ ++ F
Sbjct: 1038 DEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQF-CF 1096
Query: 297 LLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
LLSTRAGG G+NL ADT I+YDSDWNP DIQA +R HRIGQ K V IYR V+ ++ +
Sbjct: 1097 LLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE 1155
Score = 85 (35.0 bits), Expect = 9.2e-38, Sum P(2) = 9.2e-38
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H++L P LRRLK DV N+P K ++ + Q+ Y +LT+
Sbjct: 920 LHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTR 966
Score = 40 (19.1 bits), Expect = 4.8e-33, Sum P(2) = 4.8e-33
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 138 DDTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEK 171
D+ S+ E +E+K + E + S N + ++K
Sbjct: 73 DELSENEEDLEEKSESEGSDYSPNKKKKKKLKDK 106
>UNIPROTKB|F1MGF2 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006338 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:DAAA02021391
EMBL:DAAA02021392 IPI:IPI00717393 UniGene:Bt.105262
Ensembl:ENSBTAT00000034967 NextBio:20866990 Uniprot:F1MGF2
Length = 1810
Score = 367 (134.2 bits), Expect = 9.5e-38, Sum P(2) = 9.5e-38
Identities = 77/173 (44%), Positives = 116/173 (67%)
Query: 186 NVTMVLRNIISHPYLINKP-YRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKT 244
N+ M L+ +H YLI P K+E + ++++ SSGK+I+L++LL +L++ ++
Sbjct: 762 NIMMELKKCCNHCYLIKPPDNNEFYNKQEAL--QHLIRSSGKLILLDKLLIRLRERGNRV 819
Query: 245 LVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLSTRA 302
L+FS MV++L+ + E + + RL GSI+ E R A+ FN GS ++ FLLSTRA
Sbjct: 820 LIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDF-CFLLSTRA 878
Query: 303 GGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
GG G+NL +ADT +++DSDWNPQ D+QA+AR HRIGQ K V IYRLV+ + +
Sbjct: 879 GGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVE 931
Score = 84 (34.6 bits), Expect = 9.5e-38, Sum P(2) = 9.5e-38
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H L+PF LRR+K DV +LP K ++ M Q+ Y +LT+
Sbjct: 698 LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTR 744
Score = 42 (19.8 bits), Expect = 2.4e-33, Sum P(2) = 2.4e-33
Identities = 14/42 (33%), Positives = 19/42 (45%)
Query: 109 QQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDTEVQVEDK 150
++P+ R S N + + R DS E DD D E DK
Sbjct: 189 RKPQNRSKSKNGKKIIGQKKRQIDSSEEEDD--DEEEYDNDK 228
>UNIPROTKB|B6ZLK2 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0000775 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 EMBL:AB465210 IPI:IPI00573130 UniGene:Gga.4301
UniGene:Gga.8463 STRING:B6ZLK2 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 Uniprot:B6ZLK2
Length = 1719
Score = 366 (133.9 bits), Expect = 1.1e-37, Sum P(2) = 1.1e-37
Identities = 77/173 (44%), Positives = 116/173 (67%)
Query: 186 NVTMVLRNIISHPYLINKPY-RIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKT 244
N+ M L+ +H YLI P K+E + ++++ SSGK+I+L++LL +L++ ++
Sbjct: 746 NIMMELKKCCNHCYLIKPPDDNEFYNKQEAL--QHLIRSSGKLILLDKLLIRLRERGNRV 803
Query: 245 LVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLSTRA 302
L+FS MV++L+ + E + + RL GSI+ E R A+ FN GS ++ FLLSTRA
Sbjct: 804 LIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDF-CFLLSTRA 862
Query: 303 GGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
GG G+NL +ADT +++DSDWNPQ D+QA+AR HRIGQ K V IYRLV+ + +
Sbjct: 863 GGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVE 915
Score = 84 (34.6 bits), Expect = 1.1e-37, Sum P(2) = 1.1e-37
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H L+PF LRR+K DV +LP K ++ M Q+ Y +LT+
Sbjct: 682 LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTR 728
>UNIPROTKB|F1NP27 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:AADN02065411 EMBL:AADN02065412
EMBL:AADN02065413 IPI:IPI00591777 Ensembl:ENSGALT00000024661
ArrayExpress:F1NP27 Uniprot:F1NP27
Length = 1803
Score = 366 (133.9 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
Identities = 77/173 (44%), Positives = 116/173 (67%)
Query: 186 NVTMVLRNIISHPYLINKPY-RIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKT 244
N+ M L+ +H YLI P K+E + ++++ SSGK+I+L++LL +L++ ++
Sbjct: 742 NIMMELKKCCNHCYLIKPPDDNEFYNKQEAL--QHLIRSSGKLILLDKLLIRLRERGNRV 799
Query: 245 LVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLSTRA 302
L+FS MV++L+ + E + + RL GSI+ E R A+ FN GS ++ FLLSTRA
Sbjct: 800 LIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDF-CFLLSTRA 858
Query: 303 GGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
GG G+NL +ADT +++DSDWNPQ D+QA+AR HRIGQ K V IYRLV+ + +
Sbjct: 859 GGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVE 911
Score = 84 (34.6 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H L+PF LRR+K DV +LP K ++ M Q+ Y +LT+
Sbjct: 678 LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTR 724
>UNIPROTKB|F1N8K8 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:AADN02065411
EMBL:AADN02065412 EMBL:AADN02065413 IPI:IPI00588290
Ensembl:ENSGALT00000023601 ArrayExpress:F1N8K8 Uniprot:F1N8K8
Length = 1804
Score = 366 (133.9 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
Identities = 77/173 (44%), Positives = 116/173 (67%)
Query: 186 NVTMVLRNIISHPYLINKPY-RIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKT 244
N+ M L+ +H YLI P K+E + ++++ SSGK+I+L++LL +L++ ++
Sbjct: 742 NIMMELKKCCNHCYLIKPPDDNEFYNKQEAL--QHLIRSSGKLILLDKLLIRLRERGNRV 799
Query: 245 LVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLSTRA 302
L+FS MV++L+ + E + + RL GSI+ E R A+ FN GS ++ FLLSTRA
Sbjct: 800 LIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDF-CFLLSTRA 858
Query: 303 GGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
GG G+NL +ADT +++DSDWNPQ D+QA+AR HRIGQ K V IYRLV+ + +
Sbjct: 859 GGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVE 911
Score = 84 (34.6 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H L+PF LRR+K DV +LP K ++ M Q+ Y +LT+
Sbjct: 678 LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTR 724
>POMBASE|SPAC11E3.01c [details] [associations]
symbol:swr1 "SNF2 family helicase Swr1" species:4896
"Schizosaccharomyces pombe" [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISM] [GO:0005524
"ATP binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IPI] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043486 "histone exchange" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC11E3.01c GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0000812 GO:GO:0004003 GO:GO:0043486
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 PROSITE:PS51204 KO:K11681 HOGENOM:HOG000186095
OrthoDB:EOG49S9FK PIR:T37528 RefSeq:XP_001713118.1
ProteinModelPortal:O13682 STRING:O13682 EnsemblFungi:SPAC11E3.01c.1
GeneID:3361561 KEGG:spo:SPAC11E3.01c OMA:VKNEREG NextBio:20811602
Uniprot:O13682
Length = 1288
Score = 336 (123.3 bits), Expect = 1.4e-37, Sum P(3) = 1.4e-37
Identities = 64/134 (47%), Positives = 91/134 (67%)
Query: 225 GKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAV 284
GK+ VL++LL L H+ L+F+ M KVL+ +E+ + + Y RL G+ + E+R
Sbjct: 991 GKLQVLDRLLKDLVSNGHRVLIFTQMTKVLDILEQFLNIHGHRYLRLDGATKIEQRQILT 1050
Query: 285 QQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVC 344
++FN + VF+LSTR+GG G+NLT ADT I YDSDWNPQ+D QA+ R HRIGQT+ V
Sbjct: 1051 ERFNNDDKIPVFILSTRSGGLGINLTGADTVIFYDSDWNPQLDAQAQDRSHRIGQTRDVH 1110
Query: 345 IYRLVSHSTYQVHL 358
IYRL+S T + ++
Sbjct: 1111 IYRLISEYTVESNM 1124
Score = 89 (36.4 bits), Expect = 1.4e-37, Sum P(3) = 1.4e-37
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTIGENREQVA 57
+H +L+P+ LRRLK +V +P K V+ C + Q +Y + + RE +A
Sbjct: 668 LHRVLRPYLLRRLKTEVEKQMPAKYEHVVYCQLSKRQRFLYDDFINRA--RTREILA 722
Score = 61 (26.5 bits), Expect = 1.8e-32, Sum P(2) = 1.8e-32
Identities = 23/81 (28%), Positives = 39/81 (48%)
Query: 154 EPCENSSNAQDVPSAEEKNVDE-ILHHVNVKMTNVTMVLRNIISHPYLINKPYRIVDGKK 212
E E +S+ + + S +E+N DE I N++ V+ R + HP + + R KK
Sbjct: 280 EEAEETSDDEPLSSEDEENEDEDITEESNLRKRKVSDKTRVVNKHPPSLRRSRRFF-AKK 338
Query: 213 EMVCDENIVSS-SGKMIVLNQ 232
N VS G++IV+ +
Sbjct: 339 SY----NHVSDLDGEVIVMKK 355
Score = 44 (20.5 bits), Expect = 1.4e-37, Sum P(3) = 1.4e-37
Identities = 20/70 (28%), Positives = 33/70 (47%)
Query: 175 EILHHVN-VKMTNVTMVLRNIISHPYLINKPYRIVDG---KKEMVCDENIVSSSGKMIVL 230
EIL N + + N M LR + +HP L ++ IV ++ + D I ++V
Sbjct: 719 EILASGNFMSIINCLMQLRKVCNHPNL-HEERPIVTSFALRRSAIADLEIKD----LLVR 773
Query: 231 NQLLHKLKQT 240
+LLH+ T
Sbjct: 774 KRLLHEEPMT 783
>RGD|1311935 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005886 "plasma membrane"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=ISO] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 RGD:1311935 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 OrthoDB:EOG4SXNBV GeneTree:ENSGT00670000098110
IPI:IPI00560655 Ensembl:ENSRNOT00000043937 UCSC:RGD:1311935
ArrayExpress:D4ACG6 Uniprot:D4ACG6
Length = 903
Score = 351 (128.6 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
Identities = 78/174 (44%), Positives = 110/174 (63%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTN 241
VK+ NV LR + HPYL + V+ + V E+++ +SGK+ +L++LL L
Sbjct: 303 VKLQNVLTQLRKCVDHPYLFDG----VEPEPFEV-GEHLIEASGKLHLLDRLLAFLYSGG 357
Query: 242 HKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTR 301
H+ L+FS M +L+ +++ Y+Y R+ GS+R EER+ A++ F G VFLLSTR
Sbjct: 358 HRVLLFSQMTHMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNF-GKQPIFVFLLSTR 416
Query: 302 AGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
AGG G+NLTAADT I DSD+NPQ D+QA AR HRIGQ K V + RL+ T +
Sbjct: 417 AGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVE 470
Score = 88 (36.0 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
Identities = 20/58 (34%), Positives = 29/58 (50%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTIGENREQVAE 58
+H +L+PF LRR+K V LP K VI M Q+ Y +L K + + A+
Sbjct: 244 LHRLLRPFLLRRVKAQVATELPKKTEVVIYHGMSALQKKYYKAILMKDLDAFENETAK 301
>FB|FBgn0032157 [details] [associations]
symbol:Etl1 "Etl1 homologue" species:7227 "Drosophila
melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:AE014134 GO:GO:0003677
GO:GO:0006281 GO:GO:0016568 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K14439
GeneTree:ENSGT00630000089890 OMA:KEERYMA EMBL:AY060597
RefSeq:NP_001033889.1 RefSeq:NP_001033890.1 RefSeq:NP_609320.2
UniGene:Dm.3953 ProteinModelPortal:Q9VL72 SMR:Q9VL72 IntAct:Q9VL72
STRING:Q9VL72 PRIDE:Q9VL72 EnsemblMetazoa:FBtr0079901 GeneID:34311
KEGG:dme:Dmel_CG5899 UCSC:CG5899-RA FlyBase:FBgn0032157
InParanoid:Q9VL72 PhylomeDB:Q9VL72 GenomeRNAi:34311 NextBio:787873
Bgee:Q9VL72 Uniprot:Q9VL72
Length = 844
Score = 347 (127.2 bits), Expect = 2.3e-37, Sum P(2) = 2.3e-37
Identities = 66/138 (47%), Positives = 91/138 (65%)
Query: 218 ENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRN 277
+N++ SGK + L+ LL KLK H+ L+FS +L+ +EE + + + RL G+
Sbjct: 645 DNLICDSGKFLYLDTLLPKLKAEGHRVLLFSQFTMMLDIVEEYLRIRKFGFCRLDGATAV 704
Query: 278 EERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRI 337
R D + FNG VFLLST+AGG G+NLTAADTC+++D D+NP D QAE RCHR+
Sbjct: 705 NVRQDLITDFNGDDSIFVFLLSTKAGGVGINLTAADTCVIHDIDFNPYNDKQAEDRCHRM 764
Query: 338 GQTKPVCIYRLVSHSTYQ 355
GQ +PV IYRL+S ST +
Sbjct: 765 GQQRPVTIYRLISESTIE 782
Score = 90 (36.7 bits), Expect = 2.3e-37, Sum P(2) = 2.3e-37
Identities = 23/53 (43%), Positives = 30/53 (56%)
Query: 4 ILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTIGENREQV 56
I+KPF LRRLK DV NLP K + V PM Q++ Y + L N+ +V
Sbjct: 511 IMKPFVLRRLKKDVLKNLPKKLSLVEKVPMSSQQKIYYHE-LVDYYSNNKGEV 562
>UNIPROTKB|Q86WJ1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IDA] [GO:0016887 "ATPase activity"
evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006974 "response to DNA
damage stimulus" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0006200 "ATP
catabolic process" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 EMBL:AL356378 GO:GO:0006338
GO:GO:0004003 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
CTD:9557 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV EMBL:AF537213
EMBL:AK001342 EMBL:AK027631 EMBL:EF560738 EMBL:BC001171
EMBL:BC005038 EMBL:BC008649 EMBL:BC043501 EMBL:BC077717
EMBL:AK223496 IPI:IPI00329088 IPI:IPI00854584 IPI:IPI00890729
IPI:IPI00890749 RefSeq:NP_001243265.1 RefSeq:NP_001243266.1
RefSeq:NP_001243267.1 RefSeq:NP_004275.4 RefSeq:NP_078844.2
RefSeq:XP_003960255.1 RefSeq:XP_003960264.1 UniGene:Hs.191164
ProteinModelPortal:Q86WJ1 SMR:Q86WJ1 DIP:DIP-48933N IntAct:Q86WJ1
STRING:Q86WJ1 PhosphoSite:Q86WJ1 DMDM:311033359 PaxDb:Q86WJ1
PRIDE:Q86WJ1 Ensembl:ENST00000369258 Ensembl:ENST00000369259
Ensembl:ENST00000431239 Ensembl:ENST00000579763
Ensembl:ENST00000583055 GeneID:101060601 GeneID:9557
KEGG:hsa:101060601 KEGG:hsa:9557 UCSC:uc001epm.4 UCSC:uc001epo.4
UCSC:uc009wjh.3 GeneCards:GC01P146717 H-InvDB:HIX0000988
H-InvDB:HIX0028745 HGNC:HGNC:1916 HPA:HPA027789 HPA:HPA028670
MIM:613039 neXtProt:NX_Q86WJ1 PharmGKB:PA26452 InParanoid:Q86WJ1
OMA:TCQTIAL PhylomeDB:Q86WJ1 ChiTaRS:CHD1L GenomeRNAi:9557
NextBio:35849 ArrayExpress:Q86WJ1 Bgee:Q86WJ1 CleanEx:HS_CHD1L
Genevestigator:Q86WJ1 Uniprot:Q86WJ1
Length = 897
Score = 348 (127.6 bits), Expect = 3.0e-37, Sum P(2) = 3.0e-37
Identities = 77/174 (44%), Positives = 110/174 (63%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTN 241
VK+ N+ LR + HPYL + V+ + V D ++ +SGK+ +L++LL L
Sbjct: 309 VKLQNILSQLRKCVDHPYLFDG----VEPEPFEVGD-HLTEASGKLHLLDKLLAFLYSGG 363
Query: 242 HKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTR 301
H+ L+FS M ++L+ +++ Y+Y R+ GS+R EER+ A++ F G VFLLSTR
Sbjct: 364 HRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNF-GQQPIFVFLLSTR 422
Query: 302 AGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
AGG G+NLTAADT I DSD+NPQ D+QA AR HRIGQ K V + RL+ T +
Sbjct: 423 AGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVE 476
Score = 89 (36.4 bits), Expect = 3.0e-37, Sum P(2) = 3.0e-37
Identities = 20/58 (34%), Positives = 30/58 (51%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTIGENREQVAE 58
+H +L+PF LRR+K +V LP K VI M Q+ Y +L K + + A+
Sbjct: 250 LHKLLQPFLLRRVKAEVATELPKKTEVVIYHGMSALQKKYYKAILMKDLDAFENETAK 307
>DICTYBASE|DDB_G0267638 [details] [associations]
symbol:DDB_G0267638 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0267638 GO:GO:0005524
GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0003682 SUPFAM:SSF46689
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR014012 PROSITE:PS51204 KO:K11320 RefSeq:XP_647182.1
ProteinModelPortal:Q55GK2 EnsemblProtists:DDB0220518 GeneID:8615986
KEGG:ddi:DDB_G0267638 InParanoid:Q55GK2 OMA:ISFEAFA Uniprot:Q55GK2
Length = 3069
Score = 328 (120.5 bits), Expect = 3.1e-37, Sum P(3) = 3.1e-37
Identities = 64/143 (44%), Positives = 92/143 (64%)
Query: 217 DENIVS-SSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSI 275
D+ ++ GK+ L LL +LKQ H+ L+F+ M K+L+ E L Y Y RL GS
Sbjct: 1370 DKRLIQYDCGKLQQLAILLRRLKQQGHRALIFTQMTKMLDIFETFLNLHAYTYLRLDGST 1429
Query: 276 RNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCH 335
+ ++R ++FN + +F+LSTR+GG GLNLT ADT I YD+DWNP +D QA+ RCH
Sbjct: 1430 KIDKRQVLTERFNTDPKIFLFILSTRSGGLGLNLTGADTVIFYDTDWNPSMDAQAQDRCH 1489
Query: 336 RIGQTKPVCIYRLVSHSTYQVHL 358
RIGQT+ V IYR ++ T + ++
Sbjct: 1490 RIGQTREVNIYRFITQHTIEENI 1512
Score = 113 (44.8 bits), Expect = 3.1e-37, Sum P(3) = 3.1e-37
Identities = 20/60 (33%), Positives = 34/60 (56%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTIGENREQVAEYF 60
+H +L+PF LRRLK DV +PPK T ++ C M Q+ +Y + + + ++ +F
Sbjct: 992 LHAVLRPFLLRRLKKDVEKQMPPKHTHIVPCSMSRRQKFLYEEFINSSSTQSTLSSGSFF 1051
Score = 41 (19.5 bits), Expect = 9.1e-30, Sum P(3) = 9.1e-30
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 139 DTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEKNVDEIL 177
D SD + E+ E E+ +++ E +DE+L
Sbjct: 666 DLSDDNINEEEDDDGEQLESKEYLEELKLESEMPLDELL 704
Score = 39 (18.8 bits), Expect = 3.1e-37, Sum P(3) = 3.1e-37
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 186 NVTMVLRNIISHPYL 200
N+ M LR + +HP L
Sbjct: 1055 NILMQLRKVCNHPDL 1069
>TAIR|locus:2040184 [details] [associations]
symbol:PKL "PICKLE" species:3702 "Arabidopsis thaliana"
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA;ISS] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA;IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003678 "DNA helicase activity" evidence=ISS] [GO:0016568
"chromatin modification" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0009736 "cytokinin
mediated signaling pathway" evidence=IMP] [GO:0009733 "response to
auxin stimulus" evidence=IMP] [GO:2000023 "regulation of lateral
root development" evidence=IMP] [GO:0009788 "negative regulation of
abscisic acid mediated signaling pathway" evidence=IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0016246 "RNA interference" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=IMP] [GO:0009739 "response to gibberellin
stimulus" evidence=IMP] [GO:0048364 "root development"
evidence=IMP] InterPro:IPR001841 InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 Pfam:PF00628
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS50089 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 Prosite:PS00518 GO:GO:0005524 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009733
GO:GO:0046872 GO:GO:0003677 GO:GO:0008283 GO:GO:0008270
GO:GO:0016568 GO:GO:0048364 GO:GO:0009739 GO:GO:0009788
GO:GO:0009736 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
PROSITE:PS00598 HOGENOM:HOG000231124 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
EMBL:AF185578 EMBL:AF185577 EMBL:AK229409 IPI:IPI00521160
PIR:T52301 RefSeq:NP_565587.1 UniGene:At.11745
ProteinModelPortal:Q9S775 SMR:Q9S775 STRING:Q9S775 PaxDb:Q9S775
PRIDE:Q9S775 EnsemblPlants:AT2G25170.1 GeneID:817055
KEGG:ath:AT2G25170 TAIR:At2g25170 InParanoid:Q9S775 OMA:NVVMYFG
PhylomeDB:Q9S775 ProtClustDB:CLSN2688404 Genevestigator:Q9S775
GermOnline:AT2G25170 GO:GO:2000023 Uniprot:Q9S775
Length = 1384
Score = 359 (131.4 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
Identities = 66/181 (36%), Positives = 109/181 (60%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTN 241
+ + N+ M LR + HPY++ ++ E + ++ S GK+ +L++++ KLK+
Sbjct: 554 ISLNNIMMELRKVCCHPYMLEGVEPVIHDANEAF--KQLLESCGKLQLLDKMMVKLKEQG 611
Query: 242 HKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-STEWGVFLLST 300
H+ L+++ +L+ +E+ C + + Y R+ G + ER + +FN ++ FLLST
Sbjct: 612 HRVLIYTQFQHMLDLLEDYCTHKKWQYERIDGKVGGAERQIRIDRFNAKNSNKFCFLLST 671
Query: 301 RAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFT 360
RAGG G+NL ADT I+YDSDWNP D+QA AR HR+GQT V IYRL++ T + +
Sbjct: 672 RAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLINRGTIEERMMQ 731
Query: 361 I 361
+
Sbjct: 732 L 732
Score = 84 (34.6 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H +L P LRR+K DV ++PPKK ++ + Q+ Y + T+
Sbjct: 495 LHKMLAPHLLRRVKKDVMKDMPPKKELILRVDLSSLQKEYYKAIFTR 541
>UNIPROTKB|Q9ULG1 [details] [associations]
symbol:INO80 "DNA helicase INO80" species:9606 "Homo
sapiens" [GO:0003779 "actin binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005874 "microtubule" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0034644 "cellular
response to UV" evidence=IMP] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=IMP] [GO:0070914
"UV-damage excision repair" evidence=IMP] [GO:0071479 "cellular
response to ionizing radiation" evidence=IMP] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0030307 "positive regulation of cell growth"
evidence=IMP] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IMP] [GO:0010571 "positive regulation of DNA
replication involved in S phase" evidence=IMP] [GO:0043014
"alpha-tubulin binding" evidence=IMP] [GO:0051225 "spindle
assembly" evidence=IMP] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0032508 "DNA duplex unwinding" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
GO:GO:0005524 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043014
GO:GO:0003678 GO:GO:0070914 GO:GO:2000045 EMBL:CH471125
GO:GO:0010571 KO:K11665 CTD:54617 ChiTaRS:INO80 EMBL:AB033085
EMBL:BC146785 EMBL:AL137280 IPI:IPI00008091 PIR:T46350
RefSeq:NP_060023.1 UniGene:Hs.292949 ProteinModelPortal:Q9ULG1
SMR:Q9ULG1 DIP:DIP-34296N IntAct:Q9ULG1 STRING:Q9ULG1
PhosphoSite:Q9ULG1 DMDM:114149322 PaxDb:Q9ULG1 PRIDE:Q9ULG1
Ensembl:ENST00000361937 Ensembl:ENST00000401393 GeneID:54617
KEGG:hsa:54617 UCSC:uc001zni.3 GeneCards:GC15M041271
HGNC:HGNC:26956 MIM:610169 neXtProt:NX_Q9ULG1 PharmGKB:PA162392040
HOGENOM:HOG000231795 HOVERGEN:HBG057875 InParanoid:Q9ULG1
OMA:KVIRKFW OrthoDB:EOG4ZKJKF GenomeRNAi:54617 NextBio:57137
ArrayExpress:Q9ULG1 Bgee:Q9ULG1 CleanEx:HS_INO80
Genevestigator:Q9ULG1 GermOnline:ENSG00000128908 Uniprot:Q9ULG1
Length = 1556
Score = 354 (129.7 bits), Expect = 4.5e-37, Sum P(2) = 4.5e-37
Identities = 68/138 (49%), Positives = 91/138 (65%)
Query: 218 ENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRN 277
E++++ SGK+ L+ LL +LK H+ L++S M ++++ +EE V + Y RL GS +
Sbjct: 1094 ESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKI 1153
Query: 278 EERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRI 337
ER D V F + VFLLSTRAGG G+NLTAADT I YDSDWNP VD QA R HR+
Sbjct: 1154 SERRDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRL 1213
Query: 338 GQTKPVCIYRLVSHSTYQ 355
GQTK V +YRL+ T +
Sbjct: 1214 GQTKQVTVYRLICKGTIE 1231
Score = 89 (36.4 bits), Expect = 4.5e-37, Sum P(2) = 4.5e-37
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H ILKPF LRR+K DV L K ++ C + Q+L+Y + K
Sbjct: 735 LHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNK 781
Score = 44 (20.5 bits), Expect = 2.3e-32, Sum P(2) = 2.3e-32
Identities = 26/128 (20%), Positives = 53/128 (41%)
Query: 80 WFSEESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDD 139
WFS++ S+A + A ID NQL R + K + L I + ++ E D
Sbjct: 712 WFSKDIE-SHAENKSA------IDENQL-----SRLHMILKPFMLRRIKKDVEN--ELSD 757
Query: 140 TSDT----EVQVEDKIKVEPCENSSNAQDVPSAEEKNVDEILHHVNVKMTNVTMVLRNII 195
+ ++ K+ + +N + +D+ + + + + + N+ M R +
Sbjct: 758 KIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQA-QNTTSSLMNLVMQFRKVC 816
Query: 196 SHPYLINK 203
+HP L +
Sbjct: 817 NHPELFER 824
>UNIPROTKB|F1PKX5 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000045 "regulation of G1/S transition of
mitotic cell cycle" evidence=IEA] [GO:0071479 "cellular response to
ionizing radiation" evidence=IEA] [GO:0070914 "UV-damage excision
repair" evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AAEX03016071 RefSeq:XP_849183.1
Ensembl:ENSCAFT00000015097 GeneID:478262 KEGG:cfa:478262
Uniprot:F1PKX5
Length = 1560
Score = 354 (129.7 bits), Expect = 4.5e-37, Sum P(2) = 4.5e-37
Identities = 68/138 (49%), Positives = 91/138 (65%)
Query: 218 ENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRN 277
E++++ SGK+ L+ LL +LK H+ L++S M ++++ +EE V + Y RL GS +
Sbjct: 1098 ESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKI 1157
Query: 278 EERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRI 337
ER D V F + VFLLSTRAGG G+NLTAADT I YDSDWNP VD QA R HR+
Sbjct: 1158 SERRDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRL 1217
Query: 338 GQTKPVCIYRLVSHSTYQ 355
GQTK V +YRL+ T +
Sbjct: 1218 GQTKQVTVYRLICKGTIE 1235
Score = 89 (36.4 bits), Expect = 4.5e-37, Sum P(2) = 4.5e-37
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H ILKPF LRR+K DV L K ++ C + Q+L+Y + K
Sbjct: 738 LHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNK 784
Score = 41 (19.5 bits), Expect = 4.8e-32, Sum P(2) = 4.8e-32
Identities = 17/71 (23%), Positives = 30/71 (42%)
Query: 85 STLSNASSVKAGKREQTIDSNQLVQ-QPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDT 143
S L S T N ++Q + K K +L L + + S++ D++S+
Sbjct: 79 SLLGETSGAGNSGMLNTYSLNGVLQSESKSDKGNLYNFSKLKKSRKWLKSILLSDESSEA 138
Query: 144 EVQVEDKIKVE 154
+ Q ED + E
Sbjct: 139 DSQSEDNEEEE 149
Score = 41 (19.5 bits), Expect = 4.8e-32, Sum P(2) = 4.8e-32
Identities = 26/128 (20%), Positives = 52/128 (40%)
Query: 80 WFSEESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDD 139
WFS++ S+A + A ID NQL R + K + L I + ++ E D
Sbjct: 715 WFSKDIE-SHAENKSA------IDENQL-----SRLHMILKPFMLRRIKKDVEN--ELSD 760
Query: 140 TSDT----EVQVEDKIKVEPCENSSNAQDVPSAEEKNVDEILHHVNVKMTNVTMVLRNII 195
+ ++ K+ + +N + +D+ + + + + N+ M R +
Sbjct: 761 KIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQA-QTTTSSLMNLVMQFRKVC 819
Query: 196 SHPYLINK 203
+HP L +
Sbjct: 820 NHPELFER 827
>UNIPROTKB|F1SSV0 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:FP015925 RefSeq:XP_003121636.1 UniGene:Ssc.45003
Ensembl:ENSSSCT00000005252 GeneID:100517567 KEGG:ssc:100517567
Uniprot:F1SSV0
Length = 1566
Score = 354 (129.7 bits), Expect = 4.5e-37, Sum P(2) = 4.5e-37
Identities = 68/138 (49%), Positives = 91/138 (65%)
Query: 218 ENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRN 277
E++++ SGK+ L+ LL +LK H+ L++S M ++++ +EE V + Y RL GS +
Sbjct: 1104 ESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKI 1163
Query: 278 EERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRI 337
ER D V F + VFLLSTRAGG G+NLTAADT I YDSDWNP VD QA R HR+
Sbjct: 1164 SERRDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRL 1223
Query: 338 GQTKPVCIYRLVSHSTYQ 355
GQTK V +YRL+ T +
Sbjct: 1224 GQTKQVTVYRLICKGTIE 1241
Score = 89 (36.4 bits), Expect = 4.5e-37, Sum P(2) = 4.5e-37
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H ILKPF LRR+K DV L K ++ C + Q+L+Y + K
Sbjct: 744 LHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNK 790
Score = 51 (23.0 bits), Expect = 4.4e-33, Sum P(2) = 4.4e-33
Identities = 21/87 (24%), Positives = 36/87 (41%)
Query: 85 STLSNASSVKAGKREQTIDSNQLVQ-QPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDT 143
S L S + T N ++Q + K K +L L + R S++ D++S+
Sbjct: 79 SLLGETSGASSSGMLNTYSLNGVLQSESKSDKGNLYNFSKLKKSRRWLKSILLSDESSEA 138
Query: 144 EVQVEDKIKVEPCENSSNAQDVPSAEE 170
+ Q ED + E + + S EE
Sbjct: 139 DSQSEDNEEEEEDDEEEEEELNLSREE 165
Score = 41 (19.5 bits), Expect = 4.9e-32, Sum P(2) = 4.9e-32
Identities = 26/128 (20%), Positives = 52/128 (40%)
Query: 80 WFSEESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDD 139
WFS++ S+A + A ID NQL R + K + L I + ++ E D
Sbjct: 721 WFSKDIE-SHAENKSA------IDENQL-----SRLHMILKPFMLRRIKKDVEN--ELSD 766
Query: 140 TSDT----EVQVEDKIKVEPCENSSNAQDVPSAEEKNVDEILHHVNVKMTNVTMVLRNII 195
+ ++ K+ + +N + +D+ + + + + N+ M R +
Sbjct: 767 KIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQA-QTTTSSLMNLVMQFRKVC 825
Query: 196 SHPYLINK 203
+HP L +
Sbjct: 826 NHPELFER 833
>ZFIN|ZDB-GENE-041014-72 [details] [associations]
symbol:ino80 "INO80 homolog (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
ZFIN:ZDB-GENE-041014-72 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:BX897725
HOGENOM:HOG000231795 HOVERGEN:HBG057875 OMA:KVIRKFW IPI:IPI00516098
UniGene:Dr.84310 ProteinModelPortal:Q5RGG8 STRING:Q5RGG8
InParanoid:Q5RGG8 Uniprot:Q5RGG8
Length = 1582
Score = 357 (130.7 bits), Expect = 4.6e-37, Sum P(2) = 4.6e-37
Identities = 69/138 (50%), Positives = 92/138 (66%)
Query: 218 ENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRN 277
E++++ SGK+ L+ LL +LK H+ L++S M ++++ +EE V + Y RL GS +
Sbjct: 1125 ESLITDSGKLHTLDLLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKI 1184
Query: 278 EERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRI 337
ER D V F T+ VFLLSTRAGG G+NLTAADT I YDSDWNP VD QA R HR+
Sbjct: 1185 SERRDMVADFQSRTDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRL 1244
Query: 338 GQTKPVCIYRLVSHSTYQ 355
GQTK V +YRL+ T +
Sbjct: 1245 GQTKQVTVYRLICKGTIE 1262
Score = 86 (35.3 bits), Expect = 4.6e-37, Sum P(2) = 4.6e-37
Identities = 19/47 (40%), Positives = 25/47 (53%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H ILKPF LRR+K DV L K + C + Q L+Y + K
Sbjct: 736 LHMILKPFMLRRIKKDVENELSDKIEILTYCQLTSRQRLLYQALKNK 782
Score = 49 (22.3 bits), Expect = 3.5e-33, Sum P(2) = 3.5e-33
Identities = 26/126 (20%), Positives = 53/126 (42%)
Query: 80 WFSEESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDD 139
WFS++ S+A + A ID NQL R + K + L I + ++ +
Sbjct: 713 WFSKDIE-SHAENKSA------IDENQL-----SRLHMILKPFMLRRIKKDVENELSDKI 760
Query: 140 TSDTEVQVEDKIKV--EPCENSSNAQDVPSAEEKNVDEILHHVNVKMTNVTMVLRNIISH 197
T Q+ + ++ + +N + +D+ + + + H + N+ M R + +H
Sbjct: 761 EILTYCQLTSRQRLLYQALKNKISIEDLLQSSMGSAQQA-HSTTSSLMNLVMQFRKVCNH 819
Query: 198 PYLINK 203
P L +
Sbjct: 820 PDLFER 825
Score = 48 (22.0 bits), Expect = 4.5e-33, Sum P(2) = 4.5e-33
Identities = 14/58 (24%), Positives = 28/58 (48%)
Query: 92 SVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDTEVQVED 149
S + G+ E + ++Q+ K K SL L + + ++ DDT+D++ +D
Sbjct: 95 SCRDGETECGTLNGAVLQEHKADKASLYNFSRLKKSRKWLKGILLSDDTTDSDSDSDD 152
>UNIPROTKB|Q3B7N1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006200 "ATP catabolic
process" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006974 "response to DNA damage stimulus" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=ISS] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
GO:GO:0008026 EMBL:BC107534 IPI:IPI00710168 RefSeq:NP_001032909.1
UniGene:Bt.18335 ProteinModelPortal:Q3B7N1 PRIDE:Q3B7N1
GeneID:524787 KEGG:bta:524787 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 InParanoid:Q3B7N1 OrthoDB:EOG4SXNBV
NextBio:20874039 Uniprot:Q3B7N1
Length = 897
Score = 352 (129.0 bits), Expect = 6.1e-37, Sum P(2) = 6.1e-37
Identities = 76/174 (43%), Positives = 111/174 (63%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTN 241
VK+ NV LR + HPYL + V+ + + D +++ +SGK+ +L++LL L
Sbjct: 311 VKLQNVLSQLRKCVDHPYLFDG----VEPEPFEIGD-HLIEASGKLHLLDKLLAFLYSKG 365
Query: 242 HKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTR 301
H+ L+FS M ++L+ +++ Y+Y R+ GS+R EER+ A++ F G FLLSTR
Sbjct: 366 HRVLLFSQMTQMLDILQDYLDYRGYSYERVDGSVRGEERHLAIKNF-GQQPIFTFLLSTR 424
Query: 302 AGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
AGG G+NLTAADT I +DSD+NPQ D+QA AR HRIGQ K V + RL+ T +
Sbjct: 425 AGGVGMNLTAADTVIFFDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVE 478
Score = 82 (33.9 bits), Expect = 6.1e-37, Sum P(2) = 6.1e-37
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTIGENREQVAE 58
++ +L+PF LRR+K +V LP K VI M Q+ Y +L K + + A+
Sbjct: 252 LYKLLQPFLLRRVKAEVATELPRKTEVVIYHGMSALQKKYYKAILMKDLDAFENETAK 309
>FB|FBgn0086613 [details] [associations]
symbol:Ino80 "Ino80" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0000975 "regulatory region DNA
binding" evidence=IDA] [GO:0010468 "regulation of gene expression"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006355 GO:GO:0006281 GO:GO:0006351 GO:GO:0016887
GO:GO:0006338 GO:GO:0031011 GO:GO:0006310 GO:GO:0005700
GO:GO:0010468 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0000975 KO:K11665
EMBL:AY069786 RefSeq:NP_732413.1 UniGene:Dm.33518
ProteinModelPortal:Q9VDY1 SMR:Q9VDY1 IntAct:Q9VDY1 STRING:Q9VDY1
PaxDb:Q9VDY1 EnsemblMetazoa:FBtr0083771 GeneID:42314
KEGG:dme:Dmel_CG31212 UCSC:CG31212-RA CTD:54617 FlyBase:FBgn0086613
GeneTree:ENSGT00680000100052 InParanoid:Q9VDY1 OMA:NTMAEVR
OrthoDB:EOG4SQVBH PhylomeDB:Q9VDY1 ChiTaRS:INO80 GenomeRNAi:42314
NextBio:828189 Bgee:Q9VDY1 Uniprot:Q9VDY1
Length = 1638
Score = 346 (126.9 bits), Expect = 6.7e-37, Sum P(2) = 6.7e-37
Identities = 73/166 (43%), Positives = 100/166 (60%)
Query: 192 RNIISHPYLINKPYRIVDGKKEMVCD--ENIVSSSGKMIVLNQLLHKLKQTNHKTLVFST 249
R ++S + KP+ G +V E +++ +GK+ VL+ LL +LK H+ L++S
Sbjct: 1124 RELVSSGLALCKPH---GGWSSIVVPDKETLITDAGKLFVLDNLLTRLKANGHRVLIYSQ 1180
Query: 250 MVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNL 309
M K+++ +EE + Y RL GS + R D V F + VFLLSTRAGG G+NL
Sbjct: 1181 MTKMIDLLEEYMWHRKHRYMRLDGSSKISARRDMVADFQTRADIFVFLLSTRAGGLGINL 1240
Query: 310 TAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
TAADT I YDSDWNP VD QA R HR+GQTK V +YRL+ T +
Sbjct: 1241 TAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIE 1286
Score = 96 (38.9 bits), Expect = 6.7e-37, Sum P(2) = 6.7e-37
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H ILKPF LRR+K DV L K ++ CP+ Q+L+Y + K
Sbjct: 752 LHMILKPFMLRRIKKDVENELSDKIEIMVYCPLTIRQKLLYRALKQK 798
>UNIPROTKB|E1BAN8 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:DAAA02028556 EMBL:DAAA02028557 IPI:IPI00685860
RefSeq:NP_001192313.1 UniGene:Bt.55708 Ensembl:ENSBTAT00000013708
GeneID:505992 KEGG:bta:505992 NextBio:20867400 Uniprot:E1BAN8
Length = 1566
Score = 352 (129.0 bits), Expect = 7.4e-37, Sum P(2) = 7.4e-37
Identities = 68/138 (49%), Positives = 91/138 (65%)
Query: 218 ENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRN 277
E++++ SGK+ L+ LL +LK H+ L++S M ++++ +EE V + Y RL GS +
Sbjct: 1104 ESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKI 1163
Query: 278 EERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRI 337
ER D V F + VFLLSTRAGG G+NLTAADT I YDSDWNP VD QA R HR+
Sbjct: 1164 SERRDMVADFQTRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRL 1223
Query: 338 GQTKPVCIYRLVSHSTYQ 355
GQTK V +YRL+ T +
Sbjct: 1224 GQTKQVTVYRLICKGTIE 1241
Score = 89 (36.4 bits), Expect = 7.4e-37, Sum P(2) = 7.4e-37
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H ILKPF LRR+K DV L K ++ C + Q+L+Y + K
Sbjct: 744 LHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNK 790
Score = 41 (19.5 bits), Expect = 8.0e-32, Sum P(2) = 8.0e-32
Identities = 26/128 (20%), Positives = 52/128 (40%)
Query: 80 WFSEESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDD 139
WFS++ S+A + A ID NQL R + K + L I + ++ E D
Sbjct: 721 WFSKDIE-SHAENKSA------IDENQL-----SRLHMILKPFMLRRIKKDVEN--ELSD 766
Query: 140 TSDT----EVQVEDKIKVEPCENSSNAQDVPSAEEKNVDEILHHVNVKMTNVTMVLRNII 195
+ ++ K+ + +N + +D+ + + + + N+ M R +
Sbjct: 767 KIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQA-QTTTSSLMNLVMQFRKVC 825
Query: 196 SHPYLINK 203
+HP L +
Sbjct: 826 NHPELFER 833
>FB|FBgn0262519 [details] [associations]
symbol:Mi-2 species:7227 "Drosophila melanogaster"
[GO:0016887 "ATPase activity" evidence=IDA;NAS] [GO:0005634
"nucleus" evidence=ISS;IDA;NAS] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=ISS] [GO:0004386 "helicase activity"
evidence=ISS] [GO:0016581 "NuRD complex" evidence=ISS;TAS]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS;IDA] [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0005700 "polytene chromosome"
evidence=IDA] [GO:0042766 "nucleosome mobilization" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0007517 "muscle
organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0031491 "nucleosome binding"
evidence=IDA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0070615
"nucleosome-dependent ATPase activity" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 EMBL:AE014296 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0000122
GO:GO:0048813 GO:GO:0007517 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786
PROSITE:PS01359 GO:GO:0005700 GO:GO:0042766 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
EMBL:AF119716 EMBL:AY113368 RefSeq:NP_001163476.1
RefSeq:NP_649154.2 UniGene:Dm.28317 ProteinModelPortal:O97159
SMR:O97159 DIP:DIP-22862N IntAct:O97159 MINT:MINT-864813
STRING:O97159 PaxDb:O97159 EnsemblMetazoa:FBtr0074919
EnsemblMetazoa:FBtr0302046 GeneID:40170 KEGG:dme:Dmel_CG8103
CTD:40170 FlyBase:FBgn0262519 InParanoid:O97159 OrthoDB:EOG4T76J4
ChiTaRS:Mi-2 GenomeRNAi:40170 NextBio:817384 Bgee:O97159
GermOnline:CG8103 Uniprot:O97159
Length = 1982
Score = 357 (130.7 bits), Expect = 8.6e-37, Sum P(2) = 8.6e-37
Identities = 73/175 (41%), Positives = 109/175 (62%)
Query: 184 MTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDEN-IVSSSGKMIVLNQLLHKLKQTNH 242
+ N+ M L+ +HPYL + + N + ++GK+++L+++L +LK NH
Sbjct: 1010 LINIMMDLKKCCNHPYLFPSAAEEATTAAGGLYEINSLTKAAGKLVLLSKMLKQLKAQNH 1069
Query: 243 KTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLST 300
+ L+FS M K+L+ +E+ E Y Y R+ G I R +A+ +FN G+ ++ VFLLST
Sbjct: 1070 RVLIFSQMTKMLDILEDFLEGEQYKYERIDGGITGTLRQEAIDRFNAPGAQQF-VFLLST 1128
Query: 301 RAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
RAGG G+NL ADT I+YDSDWNP DIQA +R HRIGQ V IYR V+ ++ +
Sbjct: 1129 RAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVE 1183
Score = 86 (35.3 bits), Expect = 8.6e-37, Sum P(2) = 8.6e-37
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H +L P LRRLK DV N+P K ++ + Q+ Y +LTK
Sbjct: 948 LHEMLGPHMLRRLKTDVLKNMPSKSEFIVRVELSAMQKKFYKFILTK 994
Score = 45 (20.9 bits), Expect = 1.7e-32, Sum P(2) = 1.7e-32
Identities = 19/78 (24%), Positives = 40/78 (51%)
Query: 94 KAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDT-EVQVEDKIK 152
K GK+ +T + ++ K+RK N++ + ++ + D +E TS + E+K
Sbjct: 54 KKGKKRKTRKGEEKGRKKKKRK--KNESEEDSDFVQ-HDEEVEYPSTSKRGRKRKEEKQA 110
Query: 153 VEPCENSSNAQDVPSAEE 170
+ E++S+ +PS E+
Sbjct: 111 AKEKESASSG--MPSVED 126
Score = 39 (18.8 bits), Expect = 7.3e-32, Sum P(2) = 7.3e-32
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 117 SLNKTYDLTEIDRMFDSMIERDDTSDTEVQV-EDKI 151
S + YD+ E + F+ ++ DT +Q +DK+
Sbjct: 553 SFQRKYDMEEPPK-FEESLDEADTRYKRIQRHKDKV 587
>RGD|1310969 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0000070 "mitotic sister chromatid
segregation" evidence=ISO] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA;ISO] [GO:0003678 "DNA helicase activity"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006302 "double-strand break repair" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0030307 "positive
regulation of cell growth" evidence=ISO] [GO:0031011 "Ino80
complex" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0034644 "cellular response to UV" evidence=ISO]
[GO:0043014 "alpha-tubulin binding" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0051225 "spindle assembly"
evidence=ISO] [GO:0070914 "UV-damage excision repair" evidence=ISO]
[GO:0071479 "cellular response to ionizing radiation" evidence=ISO]
[GO:2000045 "regulation of G1/S transition of mitotic cell cycle"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 RGD:1310969
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00680000100052
IPI:IPI00569811 Ensembl:ENSRNOT00000031672 UCSC:RGD:1310969
Uniprot:D4A6Q6
Length = 1553
Score = 351 (128.6 bits), Expect = 9.2e-37, Sum P(2) = 9.2e-37
Identities = 68/138 (49%), Positives = 91/138 (65%)
Query: 218 ENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRN 277
E++++ SGK+ L+ LL +LK H+ L++S M ++++ +EE V + Y RL GS +
Sbjct: 1091 ESLITDSGKLYALDILLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKI 1150
Query: 278 EERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRI 337
ER D V F + VFLLSTRAGG G+NLTAADT I YDSDWNP VD QA R HR+
Sbjct: 1151 SERRDMVADFQTRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRL 1210
Query: 338 GQTKPVCIYRLVSHSTYQ 355
GQTK V +YRL+ T +
Sbjct: 1211 GQTKQVTVYRLICKGTIE 1228
Score = 89 (36.4 bits), Expect = 9.2e-37, Sum P(2) = 9.2e-37
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H ILKPF LRR+K DV L K ++ C + Q+L+Y + K
Sbjct: 731 LHMILKPFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNK 777
Score = 44 (20.5 bits), Expect = 4.8e-32, Sum P(2) = 4.8e-32
Identities = 26/128 (20%), Positives = 53/128 (41%)
Query: 80 WFSEESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDD 139
WFS++ S+A + A ID NQL R + K + L I + ++ E D
Sbjct: 708 WFSKDIE-SHAENKSA------IDENQL-----SRLHMILKPFMLRRIKKDVEN--ELSD 753
Query: 140 TSDT----EVQVEDKIKVEPCENSSNAQDVPSAEEKNVDEILHHVNVKMTNVTMVLRNII 195
+ ++ K+ + +N + +D+ + + + + + N+ M R +
Sbjct: 754 KIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQA-QNTTSSLMNLVMQFRKVC 812
Query: 196 SHPYLINK 203
+HP L +
Sbjct: 813 NHPELFER 820
Score = 38 (18.4 bits), Expect = 2.0e-31, Sum P(2) = 2.0e-31
Identities = 15/66 (22%), Positives = 28/66 (42%)
Query: 85 STLSNASSVKAGKREQTIDSNQLVQ-QPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDT 143
S L S + N ++Q + K K +L L + + S++ D++S+
Sbjct: 79 SLLGETSGASSSGLLNPYSLNGVLQSESKSDKGNLYNFSKLKKSRKWLKSILLSDESSEA 138
Query: 144 EVQVED 149
+ Q ED
Sbjct: 139 DSQSED 144
>FB|FBgn0250786 [details] [associations]
symbol:Chd1 "Chromodomain-helicase-DNA-binding protein 1"
species:7227 "Drosophila melanogaster" [GO:0005705 "polytene
chromosome interband" evidence=IDA] [GO:0004386 "helicase activity"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005703 "polytene chromosome puff" evidence=IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0035042 "fertilization,
exchange of chromosomal proteins" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0007476 "imaginal disc-derived wing
morphogenesis" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
EMBL:AE014134 GO:GO:0006355 GO:GO:0003677 GO:GO:0048477
GO:GO:0006351 GO:GO:0003682 GO:GO:0004386 GO:GO:0007476
InterPro:IPR016197 SUPFAM:SSF54160 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598 GO:GO:0005703
InterPro:IPR025260 Pfam:PF13907 EMBL:L77907 PIR:T13944
RefSeq:NP_477197.1 ProteinModelPortal:Q7KU24 SMR:Q7KU24
STRING:Q7KU24 PaxDb:Q7KU24 PRIDE:Q7KU24 EnsemblMetazoa:FBtr0077674
GeneID:33505 KEGG:dme:Dmel_CG3733 UCSC:CG3733-RA CTD:1105
FlyBase:FBgn0250786 GeneTree:ENSGT00560000076896 InParanoid:Q7KU24
KO:K11367 OrthoDB:EOG45MKM5 PhylomeDB:Q7KU24 ChiTaRS:CHD1
GenomeRNAi:33505 NextBio:783939 Bgee:Q7KU24 GO:GO:0005705
GO:GO:0035042 Uniprot:Q7KU24
Length = 1883
Score = 355 (130.0 bits), Expect = 9.6e-37, Sum P(2) = 9.6e-37
Identities = 73/167 (43%), Positives = 110/167 (65%)
Query: 186 NVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTL 245
N+ + L+ +H LI + G ++ + ++ SGK+++L++LL +LK+T H+ L
Sbjct: 797 NIVIELKKCCNHAALIRPSEFELMGLQQDEALQTLLKGSGKLVLLDKLLCRLKETGHRVL 856
Query: 246 VFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLSTRAG 303
+FS MV++L+ + + ++ + RL GSI+ E R A+ FN GS ++ FLLSTRAG
Sbjct: 857 IFSQMVRMLDVLADYLQKRHFPFQRLDGSIKGEMRRQALDHFNAEGSQDF-CFLLSTRAG 915
Query: 304 GQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVS 350
G G+NL ADT I++DSDWNPQ D+QA+AR HRIGQ V IYRLV+
Sbjct: 916 GLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKNQVNIYRLVT 962
Score = 87 (35.7 bits), Expect = 9.6e-37, Sum P(2) = 9.6e-37
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTIGENRE 54
+H L+P+ LRR+K DV +LP K ++ M Q+ Y +LTK R+
Sbjct: 733 LHQQLEPYILRRVKKDVEKSLPAKVEQILRVEMTSLQKQYYKWILTKNFDALRK 786
Score = 52 (23.4 bits), Expect = 4.5e-33, Sum P(2) = 4.5e-33
Identities = 18/74 (24%), Positives = 35/74 (47%)
Query: 81 FSEESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDD- 139
+ E + A++ + ++ +TI+ L Q+ +R C+ N+T + FD D+
Sbjct: 299 YDESQAATTAATAEEEEKCETIE-RILAQRAGKRGCTGNQTTIYAIEENGFDPHAGFDEK 357
Query: 140 -TSDTEVQVEDKIK 152
T D E + + IK
Sbjct: 358 QTPDAETEAQFLIK 371
Score = 52 (23.4 bits), Expect = 4.5e-33, Sum P(2) = 4.5e-33
Identities = 29/114 (25%), Positives = 49/114 (42%)
Query: 80 WFSEESTLSNASSVK---AGKREQ--TIDSNQLVQQPKRRKCSLNKTYDLTEID------ 128
W S+ES S S + A KR+ T ++L QQ +RR+ + D + D
Sbjct: 211 WDSDESDESEDSDDEVSTAQKRKPAATTSRSKLAQQQQRRRVKPFSSEDSDDDDASKRCA 270
Query: 129 -RMFDSMIERDDTSDTEV-QVEDKIKVEPCENSSNAQDVPSAEEKNVDEILHHV 180
R + + + S+ E ED ++ E + S A +AEE+ E + +
Sbjct: 271 TRRKGAAVSYKEASEDEATDSEDLLEFE-YDESQAATTAATAEEEEKCETIERI 323
>UNIPROTKB|F1SDB8 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:CU462855
Ensembl:ENSSSCT00000007340 Uniprot:F1SDB8
Length = 905
Score = 351 (128.6 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
Identities = 76/174 (43%), Positives = 111/174 (63%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTN 241
VK+ NV LR + HPYL + V+ + + D +++ +SGK+ +L++LL L
Sbjct: 314 VKLQNVLSQLRKCVDHPYLFDG----VEPEPFEIGD-HLIEASGKLHLLDKLLAFLYSKG 368
Query: 242 HKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTR 301
H+ L+FS M ++L+ +++ Y+Y R+ GS+R EER+ A++ F G +FLLSTR
Sbjct: 369 HRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNF-GQQPIFIFLLSTR 427
Query: 302 AGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
AGG G+NLTAADT I DSD+NPQ D+QA AR HRIGQ K V + RL+ T +
Sbjct: 428 AGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVE 481
Score = 81 (33.6 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
++ +L+PF LRR+K +V LP K VI M Q+ Y +L K +
Sbjct: 252 LYKLLQPFLLRRVKAEVAAELPKKTEVVIYHGMSALQKKYYKAILMKDL 300
>MGI|MGI:1915392 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000070 "mitotic sister chromatid segregation"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003678
"DNA helicase activity" evidence=ISO] [GO:0003779 "actin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005874 "microtubule" evidence=IEA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0010571 "positive regulation of DNA replication involved in S
phase" evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0031011 "Ino80 complex" evidence=ISO] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0034644 "cellular response to UV"
evidence=ISO] [GO:0043014 "alpha-tubulin binding" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0051225 "spindle
assembly" evidence=ISO] [GO:0051301 "cell division" evidence=IEA]
[GO:0070914 "UV-damage excision repair" evidence=ISO] [GO:0071479
"cellular response to ionizing radiation" evidence=ISO] [GO:2000045
"regulation of G1/S transition of mitotic cell cycle" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 MGI:MGI:1915392 GO:GO:0005524
GO:GO:0005634 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0070914 GO:GO:2000045 GO:GO:0010571 EMBL:AL844862 KO:K11665
CTD:54617 GeneTree:ENSGT00680000100052 HOGENOM:HOG000231795
HOVERGEN:HBG057875 OMA:KVIRKFW OrthoDB:EOG4ZKJKF EMBL:AK040612
EMBL:AK129317 EMBL:BC059235 IPI:IPI00378561 IPI:IPI00785415
RefSeq:NP_080850.2 UniGene:Mm.330496 ProteinModelPortal:Q6ZPV2
SMR:Q6ZPV2 IntAct:Q6ZPV2 STRING:Q6ZPV2 PhosphoSite:Q6ZPV2
PaxDb:Q6ZPV2 PRIDE:Q6ZPV2 Ensembl:ENSMUST00000049920
Ensembl:ENSMUST00000110808 GeneID:68142 KEGG:mmu:68142
InParanoid:Q6ZPV2 NextBio:326516 Bgee:Q6ZPV2 Genevestigator:Q6ZPV2
GermOnline:ENSMUSG00000034154 Uniprot:Q6ZPV2
Length = 1559
Score = 352 (129.0 bits), Expect = 1.2e-36, Sum P(2) = 1.2e-36
Identities = 68/138 (49%), Positives = 91/138 (65%)
Query: 218 ENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRN 277
E++++ SGK+ L+ LL +LK H+ L++S M ++++ +EE V + Y RL GS +
Sbjct: 1097 ESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKI 1156
Query: 278 EERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRI 337
ER D V F + VFLLSTRAGG G+NLTAADT I YDSDWNP VD QA R HR+
Sbjct: 1157 SERRDMVADFQTRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRL 1216
Query: 338 GQTKPVCIYRLVSHSTYQ 355
GQTK V +YRL+ T +
Sbjct: 1217 GQTKQVTVYRLICKGTIE 1234
Score = 87 (35.7 bits), Expect = 1.2e-36, Sum P(2) = 1.2e-36
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H ILKPF LRR+K DV L K + C + Q+L+Y + K
Sbjct: 737 LHMILKPFMLRRIKKDVENELSDKIEILTYCQLTSRQKLLYQALKNK 783
Score = 47 (21.6 bits), Expect = 1.8e-32, Sum P(2) = 1.8e-32
Identities = 26/126 (20%), Positives = 53/126 (42%)
Query: 80 WFSEESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDD 139
WFS++ S+A + A ID NQL R + K + L I + ++ +
Sbjct: 714 WFSKDIE-SHAENKSA------IDENQL-----SRLHMILKPFMLRRIKKDVENELSDKI 761
Query: 140 TSDTEVQVEDKIKV--EPCENSSNAQDVPSAEEKNVDEILHHVNVKMTNVTMVLRNIISH 197
T Q+ + K+ + +N + +D+ + + + + + N+ M R + +H
Sbjct: 762 EILTYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQA-QNTTSSLMNLVMQFRKVCNH 820
Query: 198 PYLINK 203
P L +
Sbjct: 821 PELFER 826
Score = 38 (18.4 bits), Expect = 1.6e-31, Sum P(2) = 1.6e-31
Identities = 15/66 (22%), Positives = 28/66 (42%)
Query: 85 STLSNASSVKAGKREQTIDSNQLVQ-QPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDT 143
S L S + N ++Q + K K +L L + + S++ D++S+
Sbjct: 79 SLLGETSGASSSGLLNPYSLNGVLQSESKSDKGNLYNFSKLKKSRKWLKSILLSDESSEA 138
Query: 144 EVQVED 149
+ Q ED
Sbjct: 139 DSQSED 144
>UNIPROTKB|F1NYY9 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0030307 "positive
regulation of cell growth" evidence=IEA] [GO:0031011 "Ino80
complex" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0043014 "alpha-tubulin binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051225 "spindle
assembly" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0071479 "cellular response to ionizing radiation"
evidence=IEA] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003678 "DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 GO:GO:0005524
GO:GO:0030307 GO:GO:0051225 GO:GO:0003677 GO:GO:0045944
GO:GO:0016887 GO:GO:0006338 GO:GO:0000070 GO:GO:0031011
GO:GO:0000724 GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914
GO:GO:2000045 GO:GO:0010571 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AADN02033529 EMBL:AADN02033530 IPI:IPI00604387
Ensembl:ENSGALT00000013933 Uniprot:F1NYY9
Length = 1564
Score = 352 (129.0 bits), Expect = 1.2e-36, Sum P(2) = 1.2e-36
Identities = 68/138 (49%), Positives = 91/138 (65%)
Query: 218 ENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRN 277
E++++ SGK+ L+ LL +LK H+ L++S M ++++ +EE V + Y RL GS +
Sbjct: 1102 ESLITDSGKLHALDLLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKI 1161
Query: 278 EERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRI 337
ER D V F + VFLLSTRAGG G+NLTAADT I YDSDWNP VD QA R HR+
Sbjct: 1162 SERRDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRL 1221
Query: 338 GQTKPVCIYRLVSHSTYQ 355
GQTK V +YRL+ T +
Sbjct: 1222 GQTKQVTVYRLICKGTIE 1239
Score = 87 (35.7 bits), Expect = 1.2e-36, Sum P(2) = 1.2e-36
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H ILKPF LRR+K DV L K ++ C Q+L+Y + K
Sbjct: 740 LHMILKPFMLRRIKKDVENELSDKIEILMYCQQTSRQKLLYQALKNK 786
Score = 47 (21.6 bits), Expect = 1.9e-32, Sum P(2) = 1.9e-32
Identities = 20/109 (18%), Positives = 48/109 (44%)
Query: 108 VQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEP-CENSSNAQDVP 166
++ K ++++ L+ + + + R D E ++ DKI++ C+ +S + +
Sbjct: 722 IESHAENKSAIDEN-QLSRLHMILKPFMLRRIKKDVENELSDKIEILMYCQQTSRQKLLY 780
Query: 167 SA-EEK-NVDEILHH----------VNVKMTNVTMVLRNIISHPYLINK 203
A + K ++D++L + N+ M R + +HP L +
Sbjct: 781 QALKNKISIDDLLQSSMGTTQQAQTTTSSLMNLVMQFRKVCNHPELFER 829
Score = 44 (20.5 bits), Expect = 3.8e-32, Sum P(2) = 3.8e-32
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 87 LSNASSVKAGKREQTIDSNQLVQ-QPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDTE 144
L +S V T N ++Q + K K SL L + + S++ DD+SDT+
Sbjct: 84 LGESSGVGNSGVLSTHSLNGVLQTESKSEKGSLYNFSKLKKSRKWLKSILLSDDSSDTD 142
>ASPGD|ASPL0000047400 [details] [associations]
symbol:AN2285 species:162425 "Emericella nidulans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0042766 "nucleosome
mobilization" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0043486 "histone exchange" evidence=IEA] [GO:0006348 "chromatin
silencing at telomere" evidence=IEA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0043618 "regulation of transcription from RNA
polymerase II promoter in response to stress" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001307 GO:GO:0006281
GO:GO:0006351 GO:GO:0016568 GO:GO:0004386 EMBL:AACD01000038
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_659889.1 ProteinModelPortal:Q5BAZ5
STRING:Q5BAZ5 EnsemblFungi:CADANIAT00008977 GeneID:2874790
KEGG:ani:AN2285.2 HOGENOM:HOG000048482 OMA:LYFQMTR
OrthoDB:EOG41G6C8 Uniprot:Q5BAZ5
Length = 1612
Score = 350 (128.3 bits), Expect = 1.5e-36, Sum P(3) = 1.5e-36
Identities = 67/135 (49%), Positives = 91/135 (67%)
Query: 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEER 280
V+ SGK+ L++LL +LK H+ L++ M ++++ +EE NY Y RL GS + E+R
Sbjct: 1317 VTDSGKLAKLDELLRELKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDR 1376
Query: 281 NDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQT 340
D V F + VFLLSTRAGG G+NLTAADT I YDSDWNP +D QA R HR+GQT
Sbjct: 1377 RDTVADFQQRPDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQT 1436
Query: 341 KPVCIYRLVSHSTYQ 355
+ V +YRL++ ST +
Sbjct: 1437 RQVTVYRLITRSTIE 1451
Score = 76 (31.8 bits), Expect = 1.5e-36, Sum P(3) = 1.5e-36
Identities = 17/44 (38%), Positives = 23/44 (52%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKV 44
+H ILKPF LRR+K V L K + C + Q +YT +
Sbjct: 1016 LHMILKPFMLRRVKKHVQQELGDKVEKDVFCDLTYRQRALYTNL 1059
Score = 43 (20.2 bits), Expect = 4.1e-33, Sum P(3) = 4.1e-33
Identities = 14/71 (19%), Positives = 29/71 (40%)
Query: 120 KTYDLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEKNVDEILHH 179
K D+ + + +E+ ++D + +K ++ EN +N P + I+
Sbjct: 232 KVGDIEPVPPVSAPRLEKKPSADKRQRNTEKEDLKSAENPTNGVTEPPKILRPPRRIMSE 291
Query: 180 VNVKMTNVTMV 190
+M N MV
Sbjct: 292 KETEMVNKYMV 302
Score = 37 (18.1 bits), Expect = 1.5e-36, Sum P(3) = 1.5e-36
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 184 MTNVTMVLRNIISHPYLINK 203
+ N+ M R + +HP L +
Sbjct: 1083 LMNLVMQFRKVCNHPDLFER 1102
>UNIPROTKB|I3LDG1 [details] [associations]
symbol:LOC100738357 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00560000077077 EMBL:FP236283
Ensembl:ENSSSCT00000031310 OMA:ENWRTEL Uniprot:I3LDG1
Length = 323
Score = 306 (112.8 bits), Expect = 2.2e-36, Sum P(2) = 2.2e-36
Identities = 67/164 (40%), Positives = 99/164 (60%)
Query: 179 HVNVKMTNVTMVLRNIISHPYLIN-KPYRIV-DGKKEMVCD------ENIVSSSGKMIVL 230
H + N M LR +HPYLIN +I+ D +K D + ++ ++GK++++
Sbjct: 151 HNMPNLINTMMELRKCCNHPYLINGAEEKILEDFRKTHSPDAPDFQLQAMIQAAGKLVLI 210
Query: 231 NQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQF-NG 289
++LL KL HK L+FS MV+ L+ +E+ + Y Y R+ G +R R A+ +F
Sbjct: 211 DKLLPKLIAGGHKVLIFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFCKP 270
Query: 290 STEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEAR 333
++ VFLL TRAGG G+NLTAADTCI++DSDWNPQ D+Q R
Sbjct: 271 DSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQVTIR 314
Score = 102 (41.0 bits), Expect = 2.2e-36, Sum P(2) = 2.2e-36
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+ +ILKP LRRLK DV NL PK+ T+I+ + Q+ Y +L K
Sbjct: 93 LQSILKPMMLRRLKDDVEKNLAPKQETIIEVELTNIQKKYYRAILEK 139
>UNIPROTKB|Q6ZRS2 [details] [associations]
symbol:SRCAP "Helicase SRCAP" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=TAS] [GO:0004402 "histone
acetyltransferase activity" evidence=TAS] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0016573 "histone acetylation" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0019048 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0006357 GO:GO:0006351 GO:GO:0003713
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC106886 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 GO:GO:0004402
EMBL:AC093249 EMBL:AK128030 EMBL:AB002307 EMBL:BC159099
EMBL:AF143946 IPI:IPI00009101 IPI:IPI00444046 IPI:IPI00550342
RefSeq:NP_006653.2 UniGene:Hs.647334 ProteinModelPortal:Q6ZRS2
SMR:Q6ZRS2 IntAct:Q6ZRS2 MINT:MINT-123408 STRING:Q6ZRS2
PhosphoSite:Q6ZRS2 DMDM:296452947 PaxDb:Q6ZRS2 PRIDE:Q6ZRS2
DNASU:10847 Ensembl:ENST00000262518 Ensembl:ENST00000344771
Ensembl:ENST00000380361 Ensembl:ENST00000395059 GeneID:10847
KEGG:hsa:10847 UCSC:uc002dze.1 UCSC:uc002dzg.1 CTD:10847
GeneCards:GC16P030710 H-InvDB:HIX0012970 HGNC:HGNC:16974
HPA:HPA028929 MIM:136140 MIM:611421 neXtProt:NX_Q6ZRS2
Orphanet:2044 PharmGKB:PA162404706 HOGENOM:HOG000168717
InParanoid:Q6ZRS2 KO:K11661 OMA:LGTGNPQ OrthoDB:EOG4B2SWB
ChiTaRS:SRCAP GenomeRNAi:10847 NextBio:41182 ArrayExpress:Q6ZRS2
Bgee:Q6ZRS2 CleanEx:HS_SRCAP Genevestigator:Q6ZRS2 Uniprot:Q6ZRS2
Length = 3230
Score = 334 (122.6 bits), Expect = 2.5e-36, Sum P(3) = 2.5e-36
Identities = 66/155 (42%), Positives = 96/155 (61%)
Query: 205 YRIVDGKKEMVCDENIVS-SSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVL 263
+RIV + D ++ GK+ L LL +LK H+ L+F+ M ++L+ +E+
Sbjct: 2022 HRIVCNMRTQFPDLRLIQYDCGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTY 2081
Query: 264 ENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWN 323
+ Y RL GS R E+R +++FN F+LSTR+GG G+NLT ADT + YDSDWN
Sbjct: 2082 HGHLYLRLDGSTRVEQRQALMERFNADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWN 2141
Query: 324 PQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHL 358
P +D QA+ RCHRIGQT+ V IYRL+S T + ++
Sbjct: 2142 PTMDAQAQDRCHRIGQTRDVHIYRLISERTVEENI 2176
Score = 96 (38.9 bits), Expect = 2.5e-36, Sum P(3) = 2.5e-36
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKT 48
+H +L+PF LRR+K DV +P K VI C + Q +Y + +T
Sbjct: 829 LHKVLRPFLLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQT 876
Score = 42 (19.8 bits), Expect = 2.5e-36, Sum P(3) = 2.5e-36
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 182 VKMTNVTMVLRNIISHPYLIN 202
+ + N+ M LR + +HP L +
Sbjct: 888 MSVINILMQLRKVCNHPNLFD 908
Score = 41 (19.5 bits), Expect = 1.3e-30, Sum P(3) = 1.3e-30
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 132 DSMIERDDTSDTEVQVEDKIKVEPCENSSNAQDVPSAEE 170
DS + D D ED+ E + S+A + +EE
Sbjct: 492 DSSSQSDSVEDRSEDEEDEHSEEEETSGSSASEESESEE 530
Score = 40 (19.1 bits), Expect = 1.6e-30, Sum P(3) = 1.6e-30
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 137 RDDTSDTEVQVEDKIKVEPCENSSNAQDV-PSAEEKNVDE 175
++D+S VED+ + E E+S + SA E++ E
Sbjct: 490 QEDSSSQSDSVEDRSEDEEDEHSEEEETSGSSASEESESE 529
Score = 40 (19.1 bits), Expect = 1.6e-30, Sum P(3) = 1.6e-30
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 132 DSMIERDDTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEKNVDE 175
D E ++TS + E + E S +AQ A+E+ D+
Sbjct: 509 DEHSEEEETSGSSASEESE-----SEESEDAQSQSQADEEEEDD 547
Score = 37 (18.1 bits), Expect = 3.2e-30, Sum P(3) = 3.2e-30
Identities = 16/79 (20%), Positives = 32/79 (40%)
Query: 99 EQTIDSNQLVQQPKRRKCSLNKTYDLT--EIDRMFDSMIERDDTSDTEVQVEDKIKVEPC 156
E+ + Q + ++RK +L+ D + ++ D + + S + K PC
Sbjct: 210 EKVVQFKQQSRLEEKRKKALDLHLDFIVGQTEKYSDLLSQ----SLNQPLTSSKAGSSPC 265
Query: 157 ENSSNAQDVPSAEEKNVDE 175
SS+A P +D+
Sbjct: 266 LGSSSAASSPPPPASRLDD 284
>UNIPROTKB|F1RG74 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043234 "protein complex" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GeneTree:ENSGT00530000063427 OMA:LGTGNPQ EMBL:FP102572
Ensembl:ENSSSCT00000008537 Uniprot:F1RG74
Length = 3230
Score = 334 (122.6 bits), Expect = 2.5e-36, Sum P(3) = 2.5e-36
Identities = 66/155 (42%), Positives = 96/155 (61%)
Query: 205 YRIVDGKKEMVCDENIVS-SSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVL 263
+RIV + D ++ GK+ L LL +LK H+ L+F+ M ++L+ +E+
Sbjct: 2022 HRIVCNMRTQFPDLRLIQYDCGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTY 2081
Query: 264 ENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWN 323
+ Y RL GS R E+R +++FN F+LSTR+GG G+NLT ADT + YDSDWN
Sbjct: 2082 HGHLYLRLDGSTRVEQRQALMERFNADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWN 2141
Query: 324 PQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHL 358
P +D QA+ RCHRIGQT+ V IYRL+S T + ++
Sbjct: 2142 PTMDAQAQDRCHRIGQTRDVHIYRLISERTVEENI 2176
Score = 96 (38.9 bits), Expect = 2.5e-36, Sum P(3) = 2.5e-36
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKT 48
+H +L+PF LRR+K DV +P K VI C + Q +Y + +T
Sbjct: 836 LHKVLRPFLLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQT 883
Score = 55 (24.4 bits), Expect = 4.4e-32, Sum P(3) = 4.4e-32
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 139 DTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEKNVDEILHHVNVKMTN 186
D+S++E + + + P E+SS+ D SAEE++ DE H + T+
Sbjct: 479 DSSESEPEGAAEAEEAPHEDSSSQSD--SAEEQSEDEEDEHSEEEETS 524
Score = 42 (19.8 bits), Expect = 2.5e-36, Sum P(3) = 2.5e-36
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 182 VKMTNVTMVLRNIISHPYLIN 202
+ + N+ M LR + +HP L +
Sbjct: 895 MSVINILMQLRKVCNHPNLFD 915
Score = 40 (19.1 bits), Expect = 1.6e-30, Sum P(3) = 1.6e-30
Identities = 19/95 (20%), Positives = 39/95 (41%)
Query: 82 SEESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIER-DDT 140
S+ S + SS + + E DS++ +P+ + ++ + DS E+ +D
Sbjct: 458 SDASAPGSGSSEEEEEDEVEADSSE--SEPEGAAEAEEAPHE--DSSSQSDSAEEQSEDE 513
Query: 141 SDTEVQVEDKIKVEPCENSSNAQDVPSAEEKNVDE 175
D + E+ + E S + + S + DE
Sbjct: 514 EDEHSEEEETSRSSESEESESEESEESQSQSQADE 548
>UNIPROTKB|E1BC33 [details] [associations]
symbol:LOC788113 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0043234 "protein complex" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GeneTree:ENSGT00530000063427 OMA:LGTGNPQ
EMBL:DAAA02057908 IPI:IPI00705506 Ensembl:ENSBTAT00000018503
Uniprot:E1BC33
Length = 3242
Score = 334 (122.6 bits), Expect = 2.5e-36, Sum P(3) = 2.5e-36
Identities = 66/155 (42%), Positives = 96/155 (61%)
Query: 205 YRIVDGKKEMVCDENIVS-SSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVL 263
+RIV + D ++ GK+ L LL +LK H+ L+F+ M ++L+ +E+
Sbjct: 2033 HRIVCNMRTQFPDLRLIQYDCGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTY 2092
Query: 264 ENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWN 323
+ Y RL GS R E+R +++FN F+LSTR+GG G+NLT ADT + YDSDWN
Sbjct: 2093 HGHLYLRLDGSTRVEQRQALMERFNADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWN 2152
Query: 324 PQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHL 358
P +D QA+ RCHRIGQT+ V IYRL+S T + ++
Sbjct: 2153 PTMDAQAQDRCHRIGQTRDVHIYRLISERTVEENI 2187
Score = 96 (38.9 bits), Expect = 2.5e-36, Sum P(3) = 2.5e-36
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKT 48
+H +L+PF LRR+K DV +P K VI C + Q +Y + +T
Sbjct: 837 LHKVLRPFLLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQT 884
Score = 54 (24.1 bits), Expect = 5.7e-32, Sum P(3) = 5.7e-32
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 139 DTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEKNVDEILHHVNVKMTN 186
++SD E + + + P E+SS+ D SAEE++ DE H + T+
Sbjct: 479 NSSDCEPEGATEAEEAPQEDSSSQSD--SAEEQSEDEDEEHSEEEETS 524
Score = 42 (19.8 bits), Expect = 2.5e-36, Sum P(3) = 2.5e-36
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 182 VKMTNVTMVLRNIISHPYLIN 202
+ + N+ M LR + +HP L +
Sbjct: 896 MSVINILMQLRKVCNHPNLFD 916
Score = 40 (19.1 bits), Expect = 1.6e-30, Sum P(3) = 1.6e-30
Identities = 18/85 (21%), Positives = 40/85 (47%)
Query: 88 SNASSVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDTEVQV 147
S+AS+ +G E+ D +++ + C + E + DS + D+++ + +
Sbjct: 458 SDASAPGSGSSEEE-DEDEV--EANSSDCEPEGATEAEEAPQE-DSS-SQSDSAEEQSED 512
Query: 148 EDKIKVEPCENSSNAQDVPSAEEKN 172
ED+ E E S +++ S E++
Sbjct: 513 EDEEHSEEEETSESSESEESESEES 537
>RGD|1565642 [details] [associations]
symbol:Srcap "Snf2-related CREBBP activator protein"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005794 "Golgi apparatus" evidence=ISO]
[GO:0043234 "protein complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00384 SMART:SM00490 RGD:1565642
GO:GO:0005524 GO:GO:0005634 GO:GO:0005794 GO:GO:0043234
GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 OrthoDB:EOG4B2SWB
IPI:IPI00778475 Ensembl:ENSRNOT00000054997 UCSC:RGD:1565642
ArrayExpress:D3ZWX7 Uniprot:D3ZWX7
Length = 3182
Score = 333 (122.3 bits), Expect = 3.0e-36, Sum P(3) = 3.0e-36
Identities = 66/156 (42%), Positives = 97/156 (62%)
Query: 205 YRIVDGKKEMVCDENIVS--SSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCV 262
+RIV + D ++ +GK+ L LL +LK H+ L+F+ M ++L+ +E+
Sbjct: 2009 HRIVCNMRTQFPDLRLIQYDCAGKLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLT 2068
Query: 263 LENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDW 322
+ Y RL GS R E+R +++FN F+LSTR+GG G+NLT ADT + YDSDW
Sbjct: 2069 YHGHLYLRLDGSTRVEQRQALMERFNADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDW 2128
Query: 323 NPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHL 358
NP +D QA+ RCHRIGQT+ V IYRL+S T + ++
Sbjct: 2129 NPTMDAQAQDRCHRIGQTRDVHIYRLISERTVEENI 2164
Score = 96 (38.9 bits), Expect = 3.0e-36, Sum P(3) = 3.0e-36
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKT 48
+H +L+PF LRR+K DV +P K VI C + Q +Y + +T
Sbjct: 839 LHKVLRPFLLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQT 886
Score = 54 (24.1 bits), Expect = 6.8e-32, Sum P(3) = 6.8e-32
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 116 CSLNKTYDLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEKN 172
C L +T D+ E + DS + D + ED+ E SS +++ S E ++
Sbjct: 481 CELEETRDVEEAAQE-DSSSQSDSAEEHSEDEEDEHSEEEMSGSSQSEESESDESED 536
Score = 50 (22.7 bits), Expect = 1.8e-31, Sum P(3) = 1.8e-31
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 139 DTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEKNVDEILHHVNVKMT 185
++SD E++ ++ E+SS+ D SAEE + DE H +M+
Sbjct: 477 NSSDCELEETRDVEEAAQEDSSSQSD--SAEEHSEDEEDEHSEEEMS 521
Score = 49 (22.3 bits), Expect = 2.2e-31, Sum P(3) = 2.2e-31
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 136 ERDDTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEKNVDE 175
E D+ S+ E+ + + + S +AQ A+E+ DE
Sbjct: 511 EEDEHSEEEMSGSSQSEESESDESEDAQSQSQADEEQEDE 550
Score = 44 (20.5 bits), Expect = 7.4e-31, Sum P(3) = 7.4e-31
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 155 PCENSSNAQDVPSAEEKNVDE 175
P + S+ D P E+N++E
Sbjct: 352 PSQTPSHDSDTPDGPEENIEE 372
Score = 42 (19.8 bits), Expect = 3.0e-36, Sum P(3) = 3.0e-36
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 182 VKMTNVTMVLRNIISHPYLIN 202
+ + N+ M LR + +HP L +
Sbjct: 898 MSVINILMQLRKVCNHPNLFD 918
>UNIPROTKB|E1C2F7 [details] [associations]
symbol:E1C2F7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0008285
"negative regulation of cell proliferation" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0030308 "negative
regulation of cell growth" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0045111 "intermediate filament cytoskeleton" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] [GO:0071778 "WINAC complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0030308 GO:GO:0045944
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0004386 GO:GO:0001105
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ EMBL:AADN02068434 EMBL:AADN02068435 EMBL:AADN02068436
EMBL:AADN02068437 EMBL:AADN02068438 EMBL:AADN02068439
EMBL:AADN02068440 EMBL:AADN02068441 IPI:IPI00583413
Ensembl:ENSGALT00000016528 Uniprot:E1C2F7
Length = 1546
Score = 332 (121.9 bits), Expect = 3.2e-36, Sum P(2) = 3.2e-36
Identities = 70/170 (41%), Positives = 106/170 (62%)
Query: 184 MTNVTMVLRNIISHPYL---INKPYRIVDGKKEMVCD-ENIVSSSGKMIVLNQLLHKLKQ 239
+ N M LR I +HPY+ I + + G V + + +SGK +L+++L KL+
Sbjct: 979 LMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRA 1038
Query: 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-STEWGVFLL 298
TNH+ L+F M ++ +E+ N+ Y RL G+ ++E+R +++FN +++ +FLL
Sbjct: 1039 TNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLL 1098
Query: 299 STRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRL 348
STRAGG GLNL AADT I++DSDWNP D+QA+ R HRIGQ V + RL
Sbjct: 1099 STRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRL 1148
Score = 103 (41.3 bits), Expect = 3.2e-36, Sum P(2) = 3.2e-36
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +L+PF LRRLK +V LP K VI C M Q+++Y + K I
Sbjct: 912 LHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGI 960
Score = 42 (19.8 bits), Expect = 7.9e-30, Sum P(2) = 7.9e-30
Identities = 9/40 (22%), Positives = 22/40 (55%)
Query: 136 ERDDTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEKNVDE 175
E D+ + ++ ++KI ++P N+++V + K + E
Sbjct: 619 EDDEEESSRLEADEKILLDP-----NSEEVSEKDAKQIIE 653
>UNIPROTKB|D4A4J2 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
Pfam:PF08880 PROSITE:PS51194 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
IPI:IPI00777186 Ensembl:ENSRNOT00000016283 ArrayExpress:D4A4J2
Uniprot:D4A4J2
Length = 1506
Score = 331 (121.6 bits), Expect = 3.8e-36, Sum P(2) = 3.8e-36
Identities = 69/170 (40%), Positives = 106/170 (62%)
Query: 184 MTNVTMVLRNIISHPYL---INKPYRIVDGKKEMVCD-ENIVSSSGKMIVLNQLLHKLKQ 239
+ N M LR I +HPY+ I + + G V + + +SGK +L+++L KL+
Sbjct: 1012 LMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRA 1071
Query: 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-STEWGVFLL 298
TNH+ L+F M ++ +E+ N+ Y RL G+ ++E+R +++FN +++ +FLL
Sbjct: 1072 TNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLL 1131
Query: 299 STRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRL 348
STRAGG GLNL AADT +++DSDWNP D+QA+ R HRIGQ V + RL
Sbjct: 1132 STRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRL 1181
Score = 103 (41.3 bits), Expect = 3.8e-36, Sum P(2) = 3.8e-36
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +L+PF LRRLK +V LP K VI C M Q+++Y + K I
Sbjct: 945 LHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGI 993
>UNIPROTKB|F2Z2R5 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AL031847
GO:GO:0008026 InterPro:IPR023780 EMBL:AL035406 HGNC:HGNC:16816
ChiTaRS:CHD5 IPI:IPI00444866 ProteinModelPortal:F2Z2R5 SMR:F2Z2R5
Ensembl:ENST00000496404 ArrayExpress:F2Z2R5 Bgee:F2Z2R5
Uniprot:F2Z2R5
Length = 1225
Score = 346 (126.9 bits), Expect = 4.0e-36, Sum P(2) = 4.0e-36
Identities = 73/165 (44%), Positives = 102/165 (61%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGK---KEMVCDENIVSSSGKMIVLNQLLHKLK 238
V + N+ M L+ +HPYL P V+ ++V SSGK+++L ++L KL+
Sbjct: 980 VSLLNIMMDLKKCCNHPYLF--PVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLR 1037
Query: 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVF 296
H+ L+FS M K+L+ +E+ E Y Y R+ G I R +A+ +FN G+ ++ F
Sbjct: 1038 DEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQF-CF 1096
Query: 297 LLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTK 341
LLSTRAGG G+NL ADT I+YDSDWNP DIQA +R HRIGQTK
Sbjct: 1097 LLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQTK 1141
Score = 85 (35.0 bits), Expect = 4.0e-36, Sum P(2) = 4.0e-36
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H++L P LRRLK DV N+P K ++ + Q+ Y +LT+
Sbjct: 920 LHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTR 966
Score = 40 (19.1 bits), Expect = 2.1e-31, Sum P(2) = 2.1e-31
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 138 DDTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEK 171
D+ S+ E +E+K + E + S N + ++K
Sbjct: 73 DELSENEEDLEEKSESEGSDYSPNKKKKKKLKDK 106
>UNIPROTKB|A5PKK5 [details] [associations]
symbol:SMARCA2 "SMARCA2 protein" species:9913 "Bos taurus"
[GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OMA:PQEGMHQ GO:GO:0035887 OrthoDB:EOG418BMJ EMBL:DAAA02022747
EMBL:DAAA02022748 EMBL:DAAA02022749 EMBL:BC142521 IPI:IPI00854472
RefSeq:NP_001092585.1 UniGene:Bt.63204 SMR:A5PKK5 STRING:A5PKK5
Ensembl:ENSBTAT00000035681 GeneID:540904 KEGG:bta:540904
InParanoid:A5PKK5 NextBio:20878906 Uniprot:A5PKK5
Length = 1554
Score = 331 (121.6 bits), Expect = 4.1e-36, Sum P(2) = 4.1e-36
Identities = 69/170 (40%), Positives = 106/170 (62%)
Query: 184 MTNVTMVLRNIISHPYL---INKPYRIVDGKKEMVCD-ENIVSSSGKMIVLNQLLHKLKQ 239
+ N M LR I +HPY+ I + + G V + + +SGK +L+++L KL+
Sbjct: 987 LMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRA 1046
Query: 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-STEWGVFLL 298
TNH+ L+F M ++ +E+ N+ Y RL G+ ++E+R +++FN +++ +FLL
Sbjct: 1047 TNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLL 1106
Query: 299 STRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRL 348
STRAGG GLNL AADT +++DSDWNP D+QA+ R HRIGQ V + RL
Sbjct: 1107 STRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRL 1156
Score = 103 (41.3 bits), Expect = 4.1e-36, Sum P(2) = 4.1e-36
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +L+PF LRRLK +V LP K VI C M Q+++Y + K I
Sbjct: 920 LHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGI 968
>UNIPROTKB|E2RKP4 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0071778 "WINAC complex" evidence=IEA]
[GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0030308 "negative regulation of cell growth"
evidence=IEA] [GO:0016514 "SWI/SNF complex" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IEA] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0045892 GO:GO:0008285
GO:GO:0030308 GO:GO:0045944 GO:GO:0044212 GO:GO:0045111
GO:GO:0000790 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0071778 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0035887
EMBL:AAEX03000600 Ensembl:ENSCAFT00000003206 NextBio:20852013
Uniprot:E2RKP4
Length = 1556
Score = 331 (121.6 bits), Expect = 4.1e-36, Sum P(2) = 4.1e-36
Identities = 69/170 (40%), Positives = 106/170 (62%)
Query: 184 MTNVTMVLRNIISHPYL---INKPYRIVDGKKEMVCD-ENIVSSSGKMIVLNQLLHKLKQ 239
+ N M LR I +HPY+ I + + G V + + +SGK +L+++L KL+
Sbjct: 989 LMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRA 1048
Query: 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-STEWGVFLL 298
TNH+ L+F M ++ +E+ N+ Y RL G+ ++E+R +++FN +++ +FLL
Sbjct: 1049 TNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLL 1108
Query: 299 STRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRL 348
STRAGG GLNL AADT +++DSDWNP D+QA+ R HRIGQ V + RL
Sbjct: 1109 STRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRL 1158
Score = 103 (41.3 bits), Expect = 4.1e-36, Sum P(2) = 4.1e-36
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +L+PF LRRLK +V LP K VI C M Q+++Y + K I
Sbjct: 922 LHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGI 970
>UNIPROTKB|F1SJG5 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 OMA:PQEGMHQ GO:GO:0035887
EMBL:CT998562 EMBL:CU062411 Ensembl:ENSSSCT00000005766
Uniprot:F1SJG5
Length = 1556
Score = 331 (121.6 bits), Expect = 4.1e-36, Sum P(2) = 4.1e-36
Identities = 69/170 (40%), Positives = 106/170 (62%)
Query: 184 MTNVTMVLRNIISHPYL---INKPYRIVDGKKEMVCD-ENIVSSSGKMIVLNQLLHKLKQ 239
+ N M LR I +HPY+ I + + G V + + +SGK +L+++L KL+
Sbjct: 989 LMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRA 1048
Query: 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-STEWGVFLL 298
TNH+ L+F M ++ +E+ N+ Y RL G+ ++E+R +++FN +++ +FLL
Sbjct: 1049 TNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLL 1108
Query: 299 STRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRL 348
STRAGG GLNL AADT +++DSDWNP D+QA+ R HRIGQ V + RL
Sbjct: 1109 STRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRL 1158
Score = 103 (41.3 bits), Expect = 4.1e-36, Sum P(2) = 4.1e-36
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +L+PF LRRLK +V LP K VI C M Q+++Y + K I
Sbjct: 922 LHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGI 970
>UNIPROTKB|J9P5P2 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 OMA:PQEGMHQ EMBL:AAEX03000600 RefSeq:XP_850159.1
Ensembl:ENSCAFT00000046362 GeneID:476335 KEGG:cfa:476335
Uniprot:J9P5P2
Length = 1574
Score = 331 (121.6 bits), Expect = 4.3e-36, Sum P(2) = 4.3e-36
Identities = 69/170 (40%), Positives = 106/170 (62%)
Query: 184 MTNVTMVLRNIISHPYL---INKPYRIVDGKKEMVCD-ENIVSSSGKMIVLNQLLHKLKQ 239
+ N M LR I +HPY+ I + + G V + + +SGK +L+++L KL+
Sbjct: 989 LMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRA 1048
Query: 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-STEWGVFLL 298
TNH+ L+F M ++ +E+ N+ Y RL G+ ++E+R +++FN +++ +FLL
Sbjct: 1049 TNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLL 1108
Query: 299 STRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRL 348
STRAGG GLNL AADT +++DSDWNP D+QA+ R HRIGQ V + RL
Sbjct: 1109 STRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRL 1158
Score = 103 (41.3 bits), Expect = 4.3e-36, Sum P(2) = 4.3e-36
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +L+PF LRRLK +V LP K VI C M Q+++Y + K I
Sbjct: 922 LHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGI 970
>MGI|MGI:99603 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0006325 "chromatin organization"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=ISO;TAS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IMP] [GO:0044212 "transcription regulatory region DNA
binding" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0071564 "npBAF complex"
evidence=IDA] [GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778
"WINAC complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 MGI:MGI:99603 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0007399 GO:GO:0030308
GO:GO:0045944 GO:GO:0044212 GO:GO:0045111 GO:GO:0000790
GO:GO:0071564 GO:GO:0016514 GO:GO:0071565 GO:GO:0004386
GO:GO:0001105 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778 KO:K11647
ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
EMBL:BC075641 IPI:IPI01018407 RefSeq:NP_035546.2 UniGene:Mm.313303
ProteinModelPortal:Q6DIC0 SMR:Q6DIC0 DIP:DIP-48888N STRING:Q6DIC0
PhosphoSite:Q6DIC0 PaxDb:Q6DIC0 PRIDE:Q6DIC0 GeneID:67155
KEGG:mmu:67155 UCSC:uc008hbn.1 InParanoid:Q6DIC0 OrthoDB:EOG418BMJ
NextBio:323746 Bgee:Q6DIC0 Genevestigator:Q6DIC0 Uniprot:Q6DIC0
Length = 1577
Score = 331 (121.6 bits), Expect = 4.3e-36, Sum P(2) = 4.3e-36
Identities = 69/170 (40%), Positives = 106/170 (62%)
Query: 184 MTNVTMVLRNIISHPYL---INKPYRIVDGKKEMVCD-ENIVSSSGKMIVLNQLLHKLKQ 239
+ N M LR I +HPY+ I + + G V + + +SGK +L+++L KL+
Sbjct: 1010 LMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRA 1069
Query: 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-STEWGVFLL 298
TNH+ L+F M ++ +E+ N+ Y RL G+ ++E+R +++FN +++ +FLL
Sbjct: 1070 TNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLL 1129
Query: 299 STRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRL 348
STRAGG GLNL AADT +++DSDWNP D+QA+ R HRIGQ V + RL
Sbjct: 1130 STRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRL 1179
Score = 103 (41.3 bits), Expect = 4.3e-36, Sum P(2) = 4.3e-36
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +L+PF LRRLK +V LP K VI C M Q+++Y + K I
Sbjct: 943 LHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGI 991
>UNIPROTKB|P51531 [details] [associations]
symbol:SMARCA2 "Probable global transcription activator
SNF2L2" species:9606 "Homo sapiens" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0035887 "aortic
smooth muscle cell differentiation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0071564 "npBAF complex"
evidence=ISS] [GO:0071565 "nBAF complex" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IDA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA;TAS] [GO:0071778 "WINAC
complex" evidence=IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0030308 "negative regulation of cell
growth" evidence=IMP] [GO:0006338 "chromatin remodeling"
evidence=TAS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=TAS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0008285 GO:GO:0007399
GO:GO:0005654 GO:GO:0030308 GO:GO:0006338 GO:GO:0000122
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 EMBL:CH471071 GO:GO:0004386
Pathway_Interaction_DB:ar_tf_pathway GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 EMBL:X72889 EMBL:D26155 EMBL:AL359076 EMBL:AL138755
IPI:IPI00386718 IPI:IPI00514648 PIR:S39580 PIR:S45251
RefSeq:NP_003061.3 RefSeq:NP_620614.2 UniGene:Hs.298990 PDB:2DAT
PDBsum:2DAT ProteinModelPortal:P51531 SMR:P51531 DIP:DIP-29005N
IntAct:P51531 MINT:MINT-1898892 STRING:P51531 PhosphoSite:P51531
DMDM:212276472 PaxDb:P51531 PRIDE:P51531 DNASU:6595
Ensembl:ENST00000349721 Ensembl:ENST00000357248
Ensembl:ENST00000382194 Ensembl:ENST00000382203 GeneID:6595
KEGG:hsa:6595 UCSC:uc003zhc.3 UCSC:uc003zhd.3 CTD:6595
GeneCards:GC09P002005 HGNC:HGNC:11098 HPA:HPA029981 MIM:600014
MIM:601358 neXtProt:NX_P51531 Orphanet:3051 PharmGKB:PA35948
HOGENOM:HOG000172363 HOVERGEN:HBG056636 InParanoid:P51531
OMA:PQEGMHQ PhylomeDB:P51531 EvolutionaryTrace:P51531
GenomeRNAi:6595 NextBio:25649 PMAP-CutDB:P51531 ArrayExpress:P51531
Bgee:P51531 CleanEx:HS_SMARCA2 Genevestigator:P51531
GermOnline:ENSG00000080503 GO:GO:0035887 Uniprot:P51531
Length = 1590
Score = 331 (121.6 bits), Expect = 4.4e-36, Sum P(2) = 4.4e-36
Identities = 69/170 (40%), Positives = 106/170 (62%)
Query: 184 MTNVTMVLRNIISHPYL---INKPYRIVDGKKEMVCD-ENIVSSSGKMIVLNQLLHKLKQ 239
+ N M LR I +HPY+ I + + G V + + +SGK +L+++L KL+
Sbjct: 1005 LMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRA 1064
Query: 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-STEWGVFLL 298
TNH+ L+F M ++ +E+ N+ Y RL G+ ++E+R +++FN +++ +FLL
Sbjct: 1065 TNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLL 1124
Query: 299 STRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRL 348
STRAGG GLNL AADT +++DSDWNP D+QA+ R HRIGQ V + RL
Sbjct: 1125 STRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRL 1174
Score = 103 (41.3 bits), Expect = 4.4e-36, Sum P(2) = 4.4e-36
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +L+PF LRRLK +V LP K VI C M Q+++Y + K I
Sbjct: 938 LHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGI 986
>RGD|1302988 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0008285 "negative regulation of cell
proliferation" evidence=ISO] [GO:0016514 "SWI/SNF complex"
evidence=ISO] [GO:0030308 "negative regulation of cell growth"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=ISO] [GO:0044212
"transcription regulatory region DNA binding" evidence=ISO]
[GO:0045111 "intermediate filament cytoskeleton" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO] [GO:0071565 "nBAF
complex" evidence=ISO] [GO:0071778 "WINAC complex" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OrthoDB:EOG418BMJ IPI:IPI00464435 EMBL:AY643746
RefSeq:NP_001004446.1 UniGene:Rn.94939 ProteinModelPortal:Q6DUH4
SMR:Q6DUH4 STRING:Q6DUH4 GeneID:361745 KEGG:rno:361745
UCSC:RGD:1302988 InParanoid:Q6DUH4 NextBio:677480
Genevestigator:Q6DUH4 Uniprot:Q6DUH4
Length = 1597
Score = 331 (121.6 bits), Expect = 4.5e-36, Sum P(2) = 4.5e-36
Identities = 69/170 (40%), Positives = 106/170 (62%)
Query: 184 MTNVTMVLRNIISHPYL---INKPYRIVDGKKEMVCD-ENIVSSSGKMIVLNQLLHKLKQ 239
+ N M LR I +HPY+ I + + G V + + +SGK +L+++L KL+
Sbjct: 1012 LMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRA 1071
Query: 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-STEWGVFLL 298
TNH+ L+F M ++ +E+ N+ Y RL G+ ++E+R +++FN +++ +FLL
Sbjct: 1072 TNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLL 1131
Query: 299 STRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRL 348
STRAGG GLNL AADT +++DSDWNP D+QA+ R HRIGQ V + RL
Sbjct: 1132 STRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRL 1181
Score = 103 (41.3 bits), Expect = 4.5e-36, Sum P(2) = 4.5e-36
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +L+PF LRRLK +V LP K VI C M Q+++Y + K I
Sbjct: 945 LHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGI 993
>UNIPROTKB|E9PTG1 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071778 "WINAC complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ GO:GO:0035887 IPI:IPI00464435
Ensembl:ENSRNOT00000016740 ArrayExpress:E9PTG1 Uniprot:E9PTG1
Length = 1597
Score = 331 (121.6 bits), Expect = 4.5e-36, Sum P(2) = 4.5e-36
Identities = 69/170 (40%), Positives = 106/170 (62%)
Query: 184 MTNVTMVLRNIISHPYL---INKPYRIVDGKKEMVCD-ENIVSSSGKMIVLNQLLHKLKQ 239
+ N M LR I +HPY+ I + + G V + + +SGK +L+++L KL+
Sbjct: 1012 LMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRA 1071
Query: 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-STEWGVFLL 298
TNH+ L+F M ++ +E+ N+ Y RL G+ ++E+R +++FN +++ +FLL
Sbjct: 1072 TNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLL 1131
Query: 299 STRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRL 348
STRAGG GLNL AADT +++DSDWNP D+QA+ R HRIGQ V + RL
Sbjct: 1132 STRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRL 1181
Score = 103 (41.3 bits), Expect = 4.5e-36, Sum P(2) = 4.5e-36
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +L+PF LRRLK +V LP K VI C M Q+++Y + K I
Sbjct: 945 LHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGI 993
>TAIR|locus:2054955 [details] [associations]
symbol:ASG3 "ALTERED SEED GERMINATION 3" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002685
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 IPI:IPI00520375 RefSeq:NP_973689.2 UniGene:At.47803
ProteinModelPortal:F4IV45 SMR:F4IV45 PRIDE:F4IV45
EnsemblPlants:AT2G44980.2 GeneID:819106 KEGG:ath:AT2G44980
OMA:WALMHFC PhylomeDB:F4IV45 ArrayExpress:F4IV45 Uniprot:F4IV45
Length = 877
Score = 356 (130.4 bits), Expect = 4.7e-36, Sum P(2) = 4.7e-36
Identities = 83/192 (43%), Positives = 113/192 (58%)
Query: 181 NVKMTNVTMVLRNIISHPYLIN--KPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLK 238
+ + N+ + LR SHPYL +P +G E++V +SGK++VL+QLL +L
Sbjct: 338 HTSLQNIVIQLRKACSHPYLFPGIEPEPFEEG-------EHLVQASGKLLVLDQLLKRLH 390
Query: 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWG---- 294
+ H+ L+FS M L+ +++ L Y+Y RL GS+R EER A++ F+ TE G
Sbjct: 391 DSGHRVLLFSQMTSTLDILQDFMELRRYSYERLDGSVRAEERFAAIKNFSAKTERGLDSE 450
Query: 295 -------VFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYR 347
VF++STRAGG GLNL AADT I Y+ DWNPQVD QA R HRIGQ V
Sbjct: 451 VDGSNAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQISHVLSIN 510
Query: 348 LVS-HSTYQVHL 358
LV+ HS +V L
Sbjct: 511 LVTEHSVEEVIL 522
Score = 69 (29.3 bits), Expect = 4.7e-36, Sum P(2) = 4.7e-36
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 4 ILKPFFLRRLKCDV----NLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
IL F LRR K + NL LPP + P+V Q+ +YT +L K +
Sbjct: 276 ILGAFMLRRTKSLLIESGNLVLPPLTELTVMVPLVSLQKKIYTSILRKEL 325
>CGD|CAL0003962 [details] [associations]
symbol:orf19.239 species:5476 "Candida albicans" [GO:0016586
"RSC complex" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0031055 "chromatin remodeling at
centromere" evidence=IEA] [GO:0006337 "nucleosome disassembly"
evidence=IEA] [GO:0016584 "nucleosome positioning" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA] [GO:0007010
"cytoskeleton organization" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0000086
"G2/M transition of mitotic cell cycle" evidence=IEA] [GO:0015616
"DNA translocase activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0070577 "histone acetyl-lysine binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0003962 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
EMBL:AACQ01000027 EMBL:AACQ01000026 InterPro:IPR014012
PROSITE:PS51204 KO:K11786 RefSeq:XP_719938.1 RefSeq:XP_720068.1
ProteinModelPortal:Q5AEM9 STRING:Q5AEM9 GeneID:3638290
GeneID:3638351 KEGG:cal:CaO19.239 KEGG:cal:CaO19.7869
Uniprot:Q5AEM9
Length = 1303
Score = 331 (121.6 bits), Expect = 6.5e-36, Sum P(2) = 6.5e-36
Identities = 66/173 (38%), Positives = 110/173 (63%)
Query: 184 MTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHK 243
+ N M LR I +HP++ + +++ + + ++ I SGK +L+++L K K++ H+
Sbjct: 781 LNNKIMQLRKICNHPFVFEEVESVLNSSR--LTNDLIWRVSGKFELLDRVLPKFKKSGHR 838
Query: 244 TLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-STEWGVFLLSTRA 302
L+F M ++++ +E+ ++ Y RL GS + EER D ++ FN +++ FLLSTRA
Sbjct: 839 VLMFFQMTQIMDIMEDFLRWKDMKYLRLDGSTKAEERQDMLKVFNAPDSDYFCFLLSTRA 898
Query: 303 GGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
GG GLNL ADT I++D+DWNP D+QA+ R HRIGQ V I RL+++ + +
Sbjct: 899 GGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITNDSVE 951
Score = 99 (39.9 bits), Expect = 6.5e-36, Sum P(2) = 6.5e-36
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVL 45
+H +L+PF LRRLK DV +LP K V+ C + Q ++Y ++L
Sbjct: 716 LHKVLRPFLLRRLKKDVEKDLPDKVEKVLKCNLSGLQYVLYQQML 760
>ASPGD|ASPL0000052010 [details] [associations]
symbol:AN1255 species:162425 "Emericella nidulans"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000070
"mitotic sister chromatid segregation" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0060303 "regulation of nucleosome density" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:BN001308 GO:GO:0003677 EMBL:AACD01000017
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
KO:K11367 HOGENOM:HOG000207917 OrthoDB:EOG4TF3TB RefSeq:XP_658859.1
ProteinModelPortal:Q5BDX5 STRING:Q5BDX5
EnsemblFungi:CADANIAT00001368 GeneID:2877029 KEGG:ani:AN1255.2
OMA:GPRRMAI Uniprot:Q5BDX5
Length = 1517
Score = 401 (146.2 bits), Expect = 6.9e-36, P = 6.9e-36
Identities = 96/245 (39%), Positives = 147/245 (60%)
Query: 120 KTYDLTEIDRMFDSMIERDDT---SDTEVQVEDKIKVEPCE-NSSNAQDVPSAEEKNVDE 175
K +LT+ F M+ R T SD + E I+VE + +++ + ++E
Sbjct: 647 KLAELTKAISPF--MLRRTKTKVESDLPPKTEKIIRVELSDVQLEYYKNILTKNYAALNE 704
Query: 176 ILHHVNVKMTNVTMVLRNIISHPYLI-NKPYRIVDG--KKEMVCDENIVSSSGKMIVLNQ 232
+ N+ M L+ +HP++ + +I++G ++E V +++SSGKM++L+Q
Sbjct: 705 GTKGQKQSLLNIMMELKKASNHPFMFPSAETKILEGSTRREDVL-RALITSSGKMMLLDQ 763
Query: 233 LLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG--S 290
LL KLK+ H+ L+FS MVK+L+ + + Y Y RL G+I + R A++ +N S
Sbjct: 764 LLAKLKRDGHRVLIFSQMVKMLDILGDYMEYRGYTYQRLDGTIPSASRRLAIEHYNAPDS 823
Query: 291 TEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVS 350
+++ F+LSTRAGG G+NL ADT IL+DSDWNPQ D+QA AR HRIGQTKPV +YRLVS
Sbjct: 824 SDFA-FILSTRAGGLGINLMTADTVILFDSDWNPQADLQAMARAHRIGQTKPVSVYRLVS 882
Query: 351 HSTYQ 355
T +
Sbjct: 883 KDTVE 887
>UNIPROTKB|F1S594 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000014884 OMA:KSSGHER Uniprot:F1S594
Length = 866
Score = 323 (118.8 bits), Expect = 7.1e-36, Sum P(2) = 7.1e-36
Identities = 70/170 (41%), Positives = 104/170 (61%)
Query: 184 MTNVTMVLRNIISHPYL---INKPYRIVDG-KKEMVCDENIVSSSGKMIVLNQLLHKLKQ 239
+ N M LR I +HPY+ I + + G +V ++ +SGK +L+++L KL+
Sbjct: 287 LMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRA 346
Query: 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-STEWGVFLL 298
TNHK L+F M ++ +E+ + Y RL G+ + E+R ++ FN +E+ +FLL
Sbjct: 347 TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLL 406
Query: 299 STRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRL 348
STRAGG GLNL +ADT I++DSDWNP D+QA+ R HRIGQ V + RL
Sbjct: 407 STRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRL 456
Score = 101 (40.6 bits), Expect = 7.1e-36, Sum P(2) = 7.1e-36
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +L+PF LRRLK +V LP K VI C M Q ++Y + K +
Sbjct: 220 LHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGV 268
>POMBASE|SPAC3G6.01 [details] [associations]
symbol:hrp3 "ATP-dependent DNA helicase Hrp3"
species:4896 "Schizosaccharomyces pombe" [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] [GO:0000790 "nuclear
chromatin" evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IC] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=NAS] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISM] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IMP]
[GO:0031934 "mating-type region heterochromatin" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEP] [GO:0060303 "regulation of
nucleosome density" evidence=IMP] [GO:0030702 "chromatin silencing
at centromere" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
PomBase:SPAC3G6.01 Pfam:PF00385 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0006338 GO:GO:0030466 GO:GO:0000790 GO:GO:0000070
GO:GO:0004003 GO:GO:0031934 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 KO:K11367 HOGENOM:HOG000207917
OrthoDB:EOG4TF3TB GO:GO:0060303 PIR:T38720 RefSeq:NP_594967.1
ProteinModelPortal:O14139 MINT:MINT-4670837 STRING:O14139
EnsemblFungi:SPAC3G6.01.1 GeneID:2543064 KEGG:spo:SPAC3G6.01
OMA:HINGSST NextBio:20804092 Uniprot:O14139
Length = 1388
Score = 353 (129.3 bits), Expect = 7.4e-36, Sum P(2) = 7.4e-36
Identities = 73/182 (40%), Positives = 118/182 (64%)
Query: 182 VKMTNVTMVLRNIISHPYL---INKPY--RI-VDGKKEMVCDENIVSSSGKMIVLNQLLH 235
+ + N+ + L+ +HPYL + + + +I G+++ V + ++ +SGKM++L++LL
Sbjct: 642 ISLLNIVVELKKASNHPYLFDGVEESWMQKINSQGRRDEVL-KGLIMNSGKMVLLDKLLS 700
Query: 236 KLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG--STEW 293
+L++ H+ L+FS MV++L+ + + L Y + RL G++ R ++ FN S ++
Sbjct: 701 RLRRDGHRVLIFSQMVRMLDILGDYLSLRGYPHQRLDGTVPAAVRRTSIDHFNAPNSPDF 760
Query: 294 GVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHST 353
VFLLSTRAGG G+NL ADT I++DSDWNPQ D+QA AR HRIGQ V +YRL+S T
Sbjct: 761 -VFLLSTRAGGLGINLMTADTVIIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLLSKDT 819
Query: 354 YQ 355
+
Sbjct: 820 IE 821
Score = 77 (32.2 bits), Expect = 7.4e-36, Sum P(2) = 7.4e-36
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 5 LKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
L+P+ LRRLK DV +LP K ++ + Q Y +LT+
Sbjct: 585 LQPYILRRLKKDVEKSLPSKSERILRVELSDLQMYWYKNILTR 627
>UNIPROTKB|F1RN66 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CU570924 EMBL:CU928692 Ensembl:ENSSSCT00000015489
Uniprot:F1RN66
Length = 1794
Score = 349 (127.9 bits), Expect = 7.5e-36, Sum P(2) = 7.5e-36
Identities = 74/173 (42%), Positives = 113/173 (65%)
Query: 186 NVTMVLRNIISHPYLINKP-YRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKT 244
N+ M L+ +H YLI P K+E + ++++ SSGK+I+L++LL +L++ ++
Sbjct: 744 NIMMELKKCCNHCYLIKPPDNNEFYNKQEAL--QHLIRSSGKLILLDKLLIRLRERGNRV 801
Query: 245 LVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLSTRA 302
L+FS MV++L+ + E + + RL GSI+ E R A+ FN GS ++ FLLSTRA
Sbjct: 802 LIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDF-CFLLSTRA 860
Query: 303 GGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
GG G+NL +ADT +++DSDWNPQ D+QA+AR HR G V IYRLV+ + +
Sbjct: 861 GGLGINLASADTVVIFDSDWNPQNDLQAQARAHRHGYLSQVNIYRLVTKGSVE 913
Score = 84 (34.6 bits), Expect = 7.5e-36, Sum P(2) = 7.5e-36
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H L+PF LRR+K DV +LP K ++ M Q+ Y +LT+
Sbjct: 680 LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTR 726
Score = 41 (19.5 bits), Expect = 2.4e-31, Sum P(2) = 2.4e-31
Identities = 21/95 (22%), Positives = 45/95 (47%)
Query: 88 SNASSVK-AGKREQTIDSNQLVQQPKRRK--CSLNKTYDLTEIDRMFDSMIERDDTS--D 142
SN+ S + + E + DS+ V++ K + ++ + ++ +S ER+ +S +
Sbjct: 114 SNSGSEEDSSSSEDSDDSSSEVKRKKHKDEDWQMSGSGSPSQSGSDSESEEEREKSSCDE 173
Query: 143 TEVQVEDKIKVEPCEN---SSNAQDVPSAEEKNVD 174
TE E K K +N S N + + +++ +D
Sbjct: 174 TESDYEPKNKSRKPQNRSKSKNGKKIIGQKKRQID 208
>UNIPROTKB|I3L6N4 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CU570924 EMBL:CU928692 Ensembl:ENSSSCT00000022643
Uniprot:I3L6N4
Length = 1798
Score = 349 (127.9 bits), Expect = 7.5e-36, Sum P(2) = 7.5e-36
Identities = 74/173 (42%), Positives = 113/173 (65%)
Query: 186 NVTMVLRNIISHPYLINKP-YRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKT 244
N+ M L+ +H YLI P K+E + ++++ SSGK+I+L++LL +L++ ++
Sbjct: 744 NIMMELKKCCNHCYLIKPPDNNEFYNKQEAL--QHLIRSSGKLILLDKLLIRLRERGNRV 801
Query: 245 LVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLSTRA 302
L+FS MV++L+ + E + + RL GSI+ E R A+ FN GS ++ FLLSTRA
Sbjct: 802 LIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDF-CFLLSTRA 860
Query: 303 GGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
GG G+NL +ADT +++DSDWNPQ D+QA+AR HR G V IYRLV+ + +
Sbjct: 861 GGLGINLASADTVVIFDSDWNPQNDLQAQARAHRHGYLSQVNIYRLVTKGSVE 913
Score = 84 (34.6 bits), Expect = 7.5e-36, Sum P(2) = 7.5e-36
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H L+PF LRR+K DV +LP K ++ M Q+ Y +LT+
Sbjct: 680 LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTR 726
Score = 41 (19.5 bits), Expect = 2.4e-31, Sum P(2) = 2.4e-31
Identities = 21/95 (22%), Positives = 45/95 (47%)
Query: 88 SNASSVK-AGKREQTIDSNQLVQQPKRRK--CSLNKTYDLTEIDRMFDSMIERDDTS--D 142
SN+ S + + E + DS+ V++ K + ++ + ++ +S ER+ +S +
Sbjct: 114 SNSGSEEDSSSSEDSDDSSSEVKRKKHKDEDWQMSGSGSPSQSGSDSESEEEREKSSCDE 173
Query: 143 TEVQVEDKIKVEPCEN---SSNAQDVPSAEEKNVD 174
TE E K K +N S N + + +++ +D
Sbjct: 174 TESDYEPKNKSRKPQNRSKSKNGKKIIGQKKRQID 208
>UNIPROTKB|I3LIS2 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006338 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:CU570924
EMBL:CU928692 Ensembl:ENSSSCT00000032432 Uniprot:I3LIS2
Length = 1799
Score = 349 (127.9 bits), Expect = 7.5e-36, Sum P(2) = 7.5e-36
Identities = 74/173 (42%), Positives = 113/173 (65%)
Query: 186 NVTMVLRNIISHPYLINKP-YRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKT 244
N+ M L+ +H YLI P K+E + ++++ SSGK+I+L++LL +L++ ++
Sbjct: 745 NIMMELKKCCNHCYLIKPPDNNEFYNKQEAL--QHLIRSSGKLILLDKLLIRLRERGNRV 802
Query: 245 LVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLSTRA 302
L+FS MV++L+ + E + + RL GSI+ E R A+ FN GS ++ FLLSTRA
Sbjct: 803 LIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDF-CFLLSTRA 861
Query: 303 GGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
GG G+NL +ADT +++DSDWNPQ D+QA+AR HR G V IYRLV+ + +
Sbjct: 862 GGLGINLASADTVVIFDSDWNPQNDLQAQARAHRHGYLSQVNIYRLVTKGSVE 914
Score = 84 (34.6 bits), Expect = 7.5e-36, Sum P(2) = 7.5e-36
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H L+PF LRR+K DV +LP K ++ M Q+ Y +LT+
Sbjct: 681 LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTR 727
Score = 41 (19.5 bits), Expect = 2.4e-31, Sum P(2) = 2.4e-31
Identities = 21/95 (22%), Positives = 45/95 (47%)
Query: 88 SNASSVK-AGKREQTIDSNQLVQQPKRRK--CSLNKTYDLTEIDRMFDSMIERDDTS--D 142
SN+ S + + E + DS+ V++ K + ++ + ++ +S ER+ +S +
Sbjct: 115 SNSGSEEDSSSSEDSDDSSSEVKRKKHKDEDWQMSGSGSPSQSGSDSESEEEREKSSCDE 174
Query: 143 TEVQVEDKIKVEPCEN---SSNAQDVPSAEEKNVD 174
TE E K K +N S N + + +++ +D
Sbjct: 175 TESDYEPKNKSRKPQNRSKSKNGKKIIGQKKRQID 209
>ZFIN|ZDB-GENE-030605-1 [details] [associations]
symbol:smarca4 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 4"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031101 "fin regeneration" evidence=IMP] [GO:0003407 "neural
retina development" evidence=IMP] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0014032 "neural crest cell
development" evidence=IMP] [GO:0060059 "embryonic retina
morphogenesis in camera-type eye" evidence=IMP] [GO:0010842 "retina
layer formation" evidence=IMP] [GO:0021634 "optic nerve formation"
evidence=IMP] [GO:0030182 "neuron differentiation" evidence=IMP]
[GO:0060973 "cell migration involved in heart development"
evidence=IMP] [GO:0001947 "heart looping" evidence=IMP] [GO:0060038
"cardiac muscle cell proliferation" evidence=IMP] [GO:0048596
"embryonic camera-type eye morphogenesis" evidence=IMP] [GO:0000185
"activation of MAPKKK activity" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 ZFIN:ZDB-GENE-030605-1 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0030182 GO:GO:0003677 GO:GO:0007417
GO:GO:0004386 GO:GO:0001947 GO:GO:0010842 GO:GO:0014032
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0031101 GO:GO:0060038 GO:GO:0048596
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 GO:GO:0060059 GO:GO:0000185 HOGENOM:HOG000172363
HOVERGEN:HBG056636 CTD:6597 OMA:HKPMESM EMBL:BX322663 EMBL:BC163918
EMBL:BC163920 EMBL:AY205256 EMBL:AY218841 IPI:IPI00493397
RefSeq:NP_853634.1 UniGene:Dr.2414 SMR:Q7ZSY3 STRING:Q7ZSY3
Ensembl:ENSDART00000115110 Ensembl:ENSDART00000134514 GeneID:353295
KEGG:dre:353295 InParanoid:Q7ZSY3 NextBio:20812727 GO:GO:0060973
GO:GO:0021634 Uniprot:Q7ZSY3
Length = 1627
Score = 331 (121.6 bits), Expect = 7.6e-36, Sum P(2) = 7.6e-36
Identities = 71/170 (41%), Positives = 105/170 (61%)
Query: 184 MTNVTMVLRNIISHPYL---INKPYRIVDG-KKEMVCDENIVSSSGKMIVLNQLLHKLKQ 239
+ N M LR I +HPY+ I + + G +V ++ +SGK +L+++L KL+
Sbjct: 1047 LMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGSDLYRASGKFELLDRILPKLRA 1106
Query: 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-STEWGVFLL 298
TNHK L+F M ++ +E+ N+ Y RL G+ + E+R ++ FN S ++ +FLL
Sbjct: 1107 TNHKVLLFCQMTTLMTIMEDYFAYRNFKYLRLDGTTKAEDRGMLLKNFNDPSHQYFIFLL 1166
Query: 299 STRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRL 348
STRAGG GLNL +ADT I++DSDWNP D+QA+ R HRIGQ V + RL
Sbjct: 1167 STRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRL 1216
Score = 101 (40.6 bits), Expect = 7.6e-36, Sum P(2) = 7.6e-36
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +L+PF LRRLK +V LP K VI C M Q ++Y + K +
Sbjct: 980 LHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGV 1028
>SGD|S000002742 [details] [associations]
symbol:SWR1 "Swi2/Snf2-related ATPase structural component of
the SWR1 complex" species:4932 "Saccharomyces cerevisiae"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IGI;IMP;IDA] [GO:0005198 "structural molecule
activity" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SGD:S000002742 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
GO:GO:0005198 EMBL:BK006938 GO:GO:0006351 GO:GO:0000812
GO:GO:0004386 GO:GO:0043486 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:U51032 KO:K11681 HOGENOM:HOG000186095 OrthoDB:EOG49S9FK
PIR:S70099 RefSeq:NP_010621.1 ProteinModelPortal:Q05471 SMR:Q05471
DIP:DIP-2845N IntAct:Q05471 MINT:MINT-1165514 STRING:Q05471
PaxDb:Q05471 EnsemblFungi:YDR334W GeneID:851934 KEGG:sce:YDR334W
CYGD:YDR334w OMA:APGFKVL NextBio:970001 Genevestigator:Q05471
GermOnline:YDR334W Uniprot:Q05471
Length = 1514
Score = 338 (124.0 bits), Expect = 7.8e-36, Sum P(2) = 7.8e-36
Identities = 82/269 (30%), Positives = 141/269 (52%)
Query: 97 KREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMF-DSMIERDDTSDTEVQVEDKIKVEP 155
K E T+D ++ + +C + ID + D ++ D +S + ++ ++
Sbjct: 1111 KLEGTVDMLNFLKMVNKLRCDRRPIFGKNLIDLLTKDRRVKYDKSSIIDNELIKPLQTRV 1170
Query: 156 CEN----SSNAQDVPSAEEKNVDEILHHVNVKMTNVTMVLRNIISHPYLINKPYRIVDGK 211
+N + A PSA ++ ++ +N + ++ + + ++ P + K
Sbjct: 1171 LDNRKIIDTFAVLTPSAVSLDMRKLALGLNDDSSVGENTRLKVMQNCFEVSNPLHQLQTK 1230
Query: 212 KEMVC-DENIVS-SSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYY 269
+ D++++ GK+ L LL +LK H+ L+F+ M KVL+ +E+ Y Y
Sbjct: 1231 LTIAFPDKSLLQYDCGKLQKLAILLQQLKDNGHRALIFTQMTKVLDVLEQFLNYHGYLYM 1290
Query: 270 RLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQ 329
RL G+ + E+R ++FN + VF+LS+R+GG G+NLT ADT I YDSDWNP +D Q
Sbjct: 1291 RLDGATKIEDRQILTERFNTDSRITVFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQ 1350
Query: 330 AEARCHRIGQTKPVCIYRLVSHSTYQVHL 358
+ RCHRIGQT+ V IYR VS T + ++
Sbjct: 1351 CQDRCHRIGQTRDVHIYRFVSEHTIESNI 1379
Score = 93 (37.8 bits), Expect = 7.8e-36, Sum P(2) = 7.8e-36
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H +L+P+ LRRLK DV +P K ++ C + Q +Y +++
Sbjct: 921 LHQVLRPYLLRRLKADVEKQMPAKYEHIVYCKLSKRQRFLYDDFMSR 967
>ASPGD|ASPL0000042729 [details] [associations]
symbol:AN2278 species:162425 "Emericella nidulans"
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194
SMART:SM00297 SMART:SM00490 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 EMBL:BN001307
GO:GO:0004386 EMBL:AACD01000038 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R RefSeq:XP_659882.1
ProteinModelPortal:Q5BB02 STRING:Q5BB02
EnsemblFungi:CADANIAT00008970 GeneID:2875521 KEGG:ani:AN2278.2
OMA:GSDHSSP Uniprot:Q5BB02
Length = 1407
Score = 337 (123.7 bits), Expect = 1.0e-35, Sum P(2) = 1.0e-35
Identities = 68/173 (39%), Positives = 111/173 (64%)
Query: 184 MTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHK 243
++N+ M LR + +HP++ + V+ + ++ I ++GK +L+++L K K T H+
Sbjct: 817 LSNMLMQLRKLCNHPFVFEQVEDQVNPGRGT--NDLIWRTAGKFELLDRILPKFKATGHR 874
Query: 244 TLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-STEWGVFLLSTRA 302
L+F M +++N +E+ L Y RL GS ++++R+D ++ FN +E+ FLLSTRA
Sbjct: 875 VLMFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDDRSDLLKLFNAPDSEYFCFLLSTRA 934
Query: 303 GGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
GG GLNL ADT I++DSDWNP D+QA+ R HRIGQ V I RL++ ++ +
Sbjct: 935 GGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRILRLITSNSVE 987
Score = 92 (37.4 bits), Expect = 1.0e-35, Sum P(2) = 1.0e-35
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLT 46
+H +L+PF LRRLK DV +LP K+ VI C Q + ++ T
Sbjct: 753 LHKVLRPFLLRRLKKDVEKDLPDKQERVIKCRFSALQAKLNKQLAT 798
>UNIPROTKB|K7GT64 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000034320 Uniprot:K7GT64
Length = 980
Score = 323 (118.8 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
Identities = 70/170 (41%), Positives = 104/170 (61%)
Query: 184 MTNVTMVLRNIISHPYL---INKPYRIVDG-KKEMVCDENIVSSSGKMIVLNQLLHKLKQ 239
+ N M LR I +HPY+ I + + G +V ++ +SGK +L+++L KL+
Sbjct: 368 LMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRA 427
Query: 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-STEWGVFLL 298
TNHK L+F M ++ +E+ + Y RL G+ + E+R ++ FN +E+ +FLL
Sbjct: 428 TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLL 487
Query: 299 STRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRL 348
STRAGG GLNL +ADT I++DSDWNP D+QA+ R HRIGQ V + RL
Sbjct: 488 STRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRL 537
Score = 101 (40.6 bits), Expect = 1.1e-35, Sum P(2) = 1.1e-35
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +L+PF LRRLK +V LP K VI C M Q ++Y + K +
Sbjct: 301 LHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGV 349
>UNIPROTKB|F1MFS2 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005886 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006974
GO:GO:0006338 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 GO:GO:0008026 IPI:IPI00710168
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:DAAA02007335
Ensembl:ENSBTAT00000027762 Uniprot:F1MFS2
Length = 896
Score = 339 (124.4 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 75/174 (43%), Positives = 110/174 (63%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTN 241
VK+ NV LR + HPYL + V+ + + D +++ +SGK+ +L++LL L
Sbjct: 311 VKLQNVLSQLRKCVDHPYLFDG----VEPEPFEIGD-HLIEASGKLHLLDKLLAFLYSKG 365
Query: 242 HKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTR 301
H+ L+FS M ++L+ +++ Y+Y R+ GS+R EER+ A++ F G FL STR
Sbjct: 366 HRVLLFSQMTQMLDILQDYLDYRGYSYERVDGSVRGEERHLAIKNF-GQQPIFTFL-STR 423
Query: 302 AGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
AGG G+NLTAADT I +DSD+NPQ D+QA AR HRIGQ K V + RL+ T +
Sbjct: 424 AGGVGMNLTAADTVIFFDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVE 477
Score = 83 (34.3 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTIGENREQVAE 58
++ +L+PF LRR+K +V LP K VI M Q+ Y +L K + ++A+
Sbjct: 252 LYKLLQPFLLRRVKAEVATELPRKTEVVIYHGMSALQKKYYKAILMKDLDAFENEMAK 309
>UNIPROTKB|J9NRN3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 EMBL:AAEX03003895
EMBL:AAEX03003896 EMBL:AAEX03003897 Ensembl:ENSCAFT00000044104
Uniprot:J9NRN3
Length = 1195
Score = 341 (125.1 bits), Expect = 1.3e-35, Sum P(2) = 1.3e-35
Identities = 72/165 (43%), Positives = 101/165 (61%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGK---KEMVCDENIVSSSGKMIVLNQLLHKLK 238
V + N+ M L+ +HPYL P V+ ++V SSGK+++L ++L KL+
Sbjct: 954 VSLLNIMMDLKKCCNHPYLF--PVAAVEAPVLPNGSYDGSSLVKSSGKLMLLQKMLKKLR 1011
Query: 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVF 296
H+ L+FS M K+L+ +E+ E Y Y R+ G I R +A+ +FN G+ ++ F
Sbjct: 1012 DEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQF-CF 1070
Query: 297 LLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTK 341
LLSTRAGG G+NL ADT I+YDSDWNP DIQA +R HRIGQ K
Sbjct: 1071 LLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNK 1115
Score = 85 (35.0 bits), Expect = 1.3e-35, Sum P(2) = 1.3e-35
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H++L P LRRLK DV N+P K ++ + Q+ Y +LT+
Sbjct: 894 LHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYKFILTR 940
Score = 39 (18.8 bits), Expect = 8.4e-31, Sum P(2) = 8.4e-31
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 138 DDTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEK 171
D+ S+ E +E+K + E + S N + ++K
Sbjct: 47 DELSENEDDLEEKSESEGSDYSPNKKKKKKLKDK 80
>DICTYBASE|DDB_G0292358 [details] [associations]
symbol:ino80 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0031011 "Ino80 complex" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0006338 "chromatin remodeling" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
dictyBase:DDB_G0292358 GO:GO:0005524 GenomeReviews:CM000155_GR
GO:GO:0003677 GO:GO:0006281 GO:GO:0016887 GO:GO:0006338
GO:GO:0006366 GO:GO:0031011 GO:GO:0004386 EMBL:AAFI02000189
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_629681.1 ProteinModelPortal:Q54DG0
STRING:Q54DG0 PRIDE:Q54DG0 EnsemblProtists:DDB0233012
GeneID:8628597 KEGG:ddi:DDB_G0292358 InParanoid:Q54DG0 OMA:MINILED
ProtClustDB:CLSZ2497087 Uniprot:Q54DG0
Length = 2129
Score = 343 (125.8 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 64/135 (47%), Positives = 90/135 (66%)
Query: 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEER 280
++ SGK+ VL++LL LK H+ L++S K++N +E+ + Y Y RL GS + ++R
Sbjct: 1763 LNDSGKLQVLDKLLKDLKVGGHRVLIYSQFTKMINILEDFMIFRKYKYLRLDGSSKLDDR 1822
Query: 281 NDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQT 340
D V F FLLSTRA G G+NLT+ADT I YDSDWNP VD QA+ R HR+GQT
Sbjct: 1823 RDMVDDFQSDPSIFAFLLSTRACGIGINLTSADTVIFYDSDWNPTVDEQAQDRAHRLGQT 1882
Query: 341 KPVCIYRLVSHSTYQ 355
+PV +YRL++ +T +
Sbjct: 1883 RPVTVYRLITKNTIE 1897
Score = 89 (36.4 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKV 44
+H ILKPF LRR+K DV +P K + C + Q+ +Y +
Sbjct: 1379 LHMILKPFMLRRIKRDVENEMPSKTEVEVYCNLTHRQKKLYQSI 1422
Score = 53 (23.7 bits), Expect = 8.9e-32, Sum P(2) = 8.9e-32
Identities = 19/75 (25%), Positives = 37/75 (49%)
Query: 83 EESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSL--NKTYDLTEIDRMFDSMIERD-D 139
EES+ + + K E+ + S L + K + L KT+D +++++ +S E +
Sbjct: 1058 EESSDDEGKTEQEKKEEEELKSEALKKTQKAIELQLLKTKTFD-RDVNKIKNSATEGGGE 1116
Query: 140 TSDTEVQVEDKIKVE 154
T + V DK+ V+
Sbjct: 1117 TIPESLAVSDKMMVD 1131
Score = 41 (19.5 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 94 KAGKREQTIDSNQL-----VQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTS 141
+A +R + ++NQ VQ+ KR++ LN TE+ F S + DD S
Sbjct: 964 EAKRRAEKEEANQRKREEEVQEAKRQQRKLNFLISQTELYSHFMSK-KLDDPS 1015
Score = 38 (18.4 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 158 NSSNAQDVPSAEEKNVDEILHHVNV 182
NSSN+ + N+ IL ++++
Sbjct: 143 NSSNSSNKSKNSNNNIPNILPYISL 167
>CGD|CAL0005422 [details] [associations]
symbol:ISW2 species:5476 "Candida albicans" [GO:0001410
"chlamydospore formation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0071280 "cellular response to copper ion"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0008623 "CHRAC" evidence=IEA] [GO:0060195 "negative regulation
of antisense RNA transcription" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0046020 "negative
regulation of transcription from RNA polymerase II promoter by
pheromones" evidence=IEA] [GO:0006348 "chromatin silencing at
telomere" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 395 (144.1 bits), Expect = 1.6e-35, P = 1.6e-35
Identities = 91/261 (34%), Positives = 149/261 (57%)
Query: 103 DSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEPCENSSNA 162
+S +L ++ K+R+ +K ++E+ ++ + R +D E + KI+ ++
Sbjct: 332 NSEELDEEEKQRR--QDKA--VSELHQLLSPFLLRRVKADVEKSLLPKIETNVYIGMTDM 387
Query: 163 QD--VPSAEEKNVDEILHHVN-----VKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMV 215
Q EK++D + V ++ N+ M LR +HPYL + +
Sbjct: 388 QVEWYKRLLEKDIDAVNGVVGKREGKTRLLNIVMQLRKCCNHPYLFDG----AEPGPPYT 443
Query: 216 CDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSI 275
DE++V +SGKMI+L+++L K K + L+FS M +VL+ +E+ C +Y Y R+ GS
Sbjct: 444 TDEHLVYNSGKMIILDKMLKKFKAEGSRVLIFSQMSRVLDILEDYCYFRDYEYCRIDGST 503
Query: 276 RNEERNDAVQQFNG-STEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARC 334
+E+R +A+ ++N +E +FLL+TRAGG G+NLT+AD ILYDSDWNPQ D+QA R
Sbjct: 504 SHEDRIEAIDEYNAPDSEKFIFLLTTRAGGLGINLTSADIVILYDSDWNPQADLQAMDRA 563
Query: 335 HRIGQTKPVCIYRLVSHSTYQ 355
HRIGQ K V ++R V+ +
Sbjct: 564 HRIGQKKQVKVFRFVTEKAIE 584
>UNIPROTKB|Q5A310 [details] [associations]
symbol:ISW2 "Putative uncharacterized protein ISW2"
species:237561 "Candida albicans SC5314" [GO:0001410 "chlamydospore
formation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0071280 "cellular response to copper ion" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 395 (144.1 bits), Expect = 1.6e-35, P = 1.6e-35
Identities = 91/261 (34%), Positives = 149/261 (57%)
Query: 103 DSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEPCENSSNA 162
+S +L ++ K+R+ +K ++E+ ++ + R +D E + KI+ ++
Sbjct: 332 NSEELDEEEKQRR--QDKA--VSELHQLLSPFLLRRVKADVEKSLLPKIETNVYIGMTDM 387
Query: 163 QD--VPSAEEKNVDEILHHVN-----VKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMV 215
Q EK++D + V ++ N+ M LR +HPYL + +
Sbjct: 388 QVEWYKRLLEKDIDAVNGVVGKREGKTRLLNIVMQLRKCCNHPYLFDG----AEPGPPYT 443
Query: 216 CDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSI 275
DE++V +SGKMI+L+++L K K + L+FS M +VL+ +E+ C +Y Y R+ GS
Sbjct: 444 TDEHLVYNSGKMIILDKMLKKFKAEGSRVLIFSQMSRVLDILEDYCYFRDYEYCRIDGST 503
Query: 276 RNEERNDAVQQFNG-STEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARC 334
+E+R +A+ ++N +E +FLL+TRAGG G+NLT+AD ILYDSDWNPQ D+QA R
Sbjct: 504 SHEDRIEAIDEYNAPDSEKFIFLLTTRAGGLGINLTSADIVILYDSDWNPQADLQAMDRA 563
Query: 335 HRIGQTKPVCIYRLVSHSTYQ 355
HRIGQ K V ++R V+ +
Sbjct: 564 HRIGQKKQVKVFRFVTEKAIE 584
>TAIR|locus:2041644 [details] [associations]
symbol:CHR5 "chromatin remodeling 5" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0009506 GO:GO:0005524 GO:GO:0005634
EMBL:CP002685 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907 KO:K11367
IPI:IPI00521189 RefSeq:NP_178970.3 UniGene:At.40665 PRIDE:F4IV99
EnsemblPlants:AT2G13370.1 GeneID:815823 KEGG:ath:AT2G13370
OMA:ARNTKSY Uniprot:F4IV99
Length = 1724
Score = 353 (129.3 bits), Expect = 1.7e-35, Sum P(2) = 1.7e-35
Identities = 71/176 (40%), Positives = 111/176 (63%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGK-KEMVCDENIVSSSGKMIVLNQLLHKLKQT 240
V + N+ + L+ +HP+L G + + I+ SSGK+++L++LL +L++T
Sbjct: 895 VSLLNIVVELKKCCNHPFLFESADHGYGGDINDNSKLDKIILSSGKLVILDKLLVRLRET 954
Query: 241 NHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-STEWGVFLLS 299
H+ L+FS MV++L+ + E L + + RL GS + E R A+ FN +++ FLLS
Sbjct: 955 KHRVLIFSQMVRMLDILAEYLSLRGFQFQRLDGSTKAELRQQAMDHFNAPASDDFCFLLS 1014
Query: 300 TRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
TRAGG G+NL ADT +++DSDWNPQ D+QA +R HRIGQ + V IYR V+ + +
Sbjct: 1015 TRAGGLGINLATADTVVIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVE 1070
Score = 76 (31.8 bits), Expect = 1.7e-35, Sum P(2) = 1.7e-35
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H L+P LRR+ DV +LPPK ++ M P Q+ Y +L +
Sbjct: 835 LHLELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILER 881
Score = 50 (22.7 bits), Expect = 9.3e-33, Sum P(2) = 9.3e-33
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 96 GKREQTIDSNQLVQQPKR--RKCSLNKTYDLTEIDRMFDSMIERDDTSDTEVQVEDKI 151
G+ TI + V+ R RK S ++ D +ID + ++DD + + V +K+
Sbjct: 368 GRSTNTIGQSSEVRSSTRSVRKVSYVESEDSEDIDDGKNRKNQKDDIEEEDADVIEKV 425
Score = 46 (21.3 bits), Expect = 2.4e-32, Sum P(2) = 2.4e-32
Identities = 15/72 (20%), Positives = 31/72 (43%)
Query: 98 REQTIDS-NQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEPC 156
R + +DS N+ + + +NK + + D D M+ + E D + +
Sbjct: 138 RSEKLDSENENDNENEEEDNEMNK-HQSGQADVPADEMLSDEYYEQDEDNQSDHVHYKGY 196
Query: 157 ENSSNAQDVPSA 168
N +N++ +P A
Sbjct: 197 SNPTNSRSLPKA 208
Score = 39 (18.8 bits), Expect = 1.3e-31, Sum P(2) = 1.3e-31
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 102 IDSNQLVQQPKRRKCS-LNKTYDLTEIDRMFDSMIERDDTSDTE 144
+D N+ Q + S LN+ D T +R FD ++ SD E
Sbjct: 17 LDENEERQNAATFQSSPLNEDVDGTYSERGFDMNMDVQYQSDPE 60
>ZFIN|ZDB-GENE-030131-5964 [details] [associations]
symbol:smarca2 "SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, subfamily a,
member 2" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 ZFIN:ZDB-GENE-030131-5964 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 CTD:6595
HOVERGEN:HBG056636 EMBL:BC060676 IPI:IPI00483012 RefSeq:NP_997881.1
UniGene:Dr.93531 ProteinModelPortal:Q6P9P2 SMR:Q6P9P2 STRING:Q6P9P2
GeneID:334032 KEGG:dre:334032 InParanoid:Q6P9P2 NextBio:20810237
ArrayExpress:Q6P9P2 Uniprot:Q6P9P2
Length = 1568
Score = 328 (120.5 bits), Expect = 1.8e-35, Sum P(2) = 1.8e-35
Identities = 68/170 (40%), Positives = 107/170 (62%)
Query: 184 MTNVTMVLRNIISHPYL---INKPYRIVDG-KKEMVCDENIVSSSGKMIVLNQLLHKLKQ 239
+ N M L+ I +HPY+ I + + G ++ ++ +SGK +L+++L KLK
Sbjct: 1007 LMNTIMQLKKICNHPYMFQHIEESFAEHLGFPNGIISGPDLYRASGKFELLDRILPKLKA 1066
Query: 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGS-TEWGVFLL 298
TNH+ L+F M ++ +E+ N+ Y RL G+ ++E+R +++FN +++ +FLL
Sbjct: 1067 TNHRVLLFCQMTSLMTILEDYFGYRNFLYLRLDGTTKSEDRAMLLKKFNEEGSQYFIFLL 1126
Query: 299 STRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRL 348
STRAGG GLNL AADT +++DSDWNP D+QA+ R HRIGQ V + RL
Sbjct: 1127 STRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRL 1176
Score = 100 (40.3 bits), Expect = 1.8e-35, Sum P(2) = 1.8e-35
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +L+PF LRRLK +V LP K VI C M Q+++Y + K I
Sbjct: 940 LHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSAIQKVLYRHMQGKGI 988
>FB|FBgn0000212 [details] [associations]
symbol:brm "brahma" species:7227 "Drosophila melanogaster"
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=ISS;IDA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS;IDA] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=NAS]
[GO:0003713 "transcription coactivator activity" evidence=ISS;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0048096
"chromatin-mediated maintenance of transcription" evidence=NAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0035060 "brahma
complex" evidence=IDA;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0045749 "negative regulation of S phase of mitotic cell cycle"
evidence=IGI] [GO:0035172 "hemocyte proliferation" evidence=TAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0007474 "imaginal disc-derived wing vein specification"
evidence=IMP] [GO:0048666 "neuron development" evidence=IMP]
[GO:0007517 "muscle organ development" evidence=IMP] [GO:0048813
"dendrite morphogenesis" evidence=IMP] [GO:0006911 "phagocytosis,
engulfment" evidence=IMP] [GO:0007409 "axonogenesis" evidence=IMP]
[GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IGI]
[GO:0008586 "imaginal disc-derived wing vein morphogenesis"
evidence=IMP] [GO:0008587 "imaginal disc-derived wing margin
morphogenesis" evidence=IMP] [GO:0045742 "positive regulation of
epidermal growth factor receptor signaling pathway" evidence=IMP]
[GO:0070983 "dendrite guidance" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] [GO:0043974 "histone H3-K27
acetylation" evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045893 GO:GO:0006911 EMBL:AE014296 GO:GO:0003677
GO:GO:0008586 GO:GO:0007474 GO:GO:0048477 GO:GO:0006351
GO:GO:0016887 GO:GO:0007517 GO:GO:0007409 GO:GO:0004386
GO:GO:0045742 GO:GO:0007480 GO:GO:0045749 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0008587 KO:K11647 EMBL:M85049
EMBL:AY095048 EMBL:BT009972 PIR:A42091 RefSeq:NP_536745.4
RefSeq:NP_536746.1 RefSeq:NP_730088.1 RefSeq:NP_730089.1
UniGene:Dm.5356 ProteinModelPortal:P25439 SMR:P25439 DIP:DIP-36728N
IntAct:P25439 MINT:MINT-6541230 STRING:P25439 PaxDb:P25439
EnsemblMetazoa:FBtr0075525 EnsemblMetazoa:FBtr0075526 GeneID:39744
KEGG:dme:Dmel_CG5942 CTD:39744 FlyBase:FBgn0000212
GeneTree:ENSGT00550000074659 InParanoid:P25439 OMA:QKKYTIS
OrthoDB:EOG4K3JB3 PhylomeDB:P25439 ChiTaRS:SMARCA2 GenomeRNAi:39744
NextBio:815155 Bgee:P25439 GermOnline:CG5942 GO:GO:0035060
GO:GO:0070983 GO:GO:0035172 GO:GO:0043974 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 Uniprot:P25439
Length = 1638
Score = 329 (120.9 bits), Expect = 2.0e-35, Sum P(2) = 2.0e-35
Identities = 68/171 (39%), Positives = 105/171 (61%)
Query: 184 MTNVTMVLRNIISHPYL---INKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQT 240
+ N + LR + +HP++ I + Y G +V ++ SGK +L+++L KLK T
Sbjct: 1054 LMNTIVQLRKLCNHPFMFQHIEEKYCDHTGGHGVVSGPDLYRVSGKFELLDRILPKLKAT 1113
Query: 241 NHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGS-TEWGVFLLS 299
NH+ L+F M + + IE+ + Y RL G+ + E+R + +++FN ++ VFLLS
Sbjct: 1114 NHRVLLFCQMTQCMTIIEDYLGWRQFGYLRLDGTTKAEDRGELLRKFNAKGSDVFVFLLS 1173
Query: 300 TRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVS 350
TRAGG GLNL ADT +++DSDWNP D+QA+ R HRIGQ V + RL++
Sbjct: 1174 TRAGGLGLNLQTADTVVIFDSDWNPHQDLQAQDRAHRIGQRNEVRVLRLMT 1224
Score = 99 (39.9 bits), Expect = 2.0e-35, Sum P(2) = 2.0e-35
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +L+PF LRRLK +V LP K +I C M Q ++Y + +K +
Sbjct: 987 LHKVLRPFLLRRLKKEVEHQLPDKVEYIIKCDMSALQRVLYKHMQSKGV 1035
>UNIPROTKB|D4AA07 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS51194 SMART:SM00490 SMART:SM00592 RGD:621728
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OrthoDB:EOG418BMJ IPI:IPI00915110 Ensembl:ENSRNOT00000060926
ArrayExpress:D4AA07 Uniprot:D4AA07
Length = 1262
Score = 323 (118.8 bits), Expect = 2.6e-35, Sum P(2) = 2.6e-35
Identities = 70/170 (41%), Positives = 104/170 (61%)
Query: 184 MTNVTMVLRNIISHPYL---INKPYRIVDG-KKEMVCDENIVSSSGKMIVLNQLLHKLKQ 239
+ N M LR I +HPY+ I + + G +V ++ +SGK +L+++L KL+
Sbjct: 834 LMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRA 893
Query: 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-STEWGVFLL 298
TNHK L+F M ++ +E+ + Y RL G+ + E+R ++ FN +E+ +FLL
Sbjct: 894 TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLL 953
Query: 299 STRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRL 348
STRAGG GLNL +ADT I++DSDWNP D+QA+ R HRIGQ V + RL
Sbjct: 954 STRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRL 1003
Score = 101 (40.6 bits), Expect = 2.6e-35, Sum P(2) = 2.6e-35
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +L+PF LRRLK +V LP K VI C M Q ++Y + K +
Sbjct: 767 LHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGV 815
>SGD|S000001934 [details] [associations]
symbol:IRC5 "Putative ATPase containing the DEAD/H
helicase-related sequence motif" species:4932 "Saccharomyces
cerevisiae" [GO:0006312 "mitotic recombination" evidence=IMP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000001934 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 EMBL:D50617 EMBL:BK006940 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006312 GeneTree:ENSGT00550000075106 PIR:S56293
RefSeq:NP_116696.2 ProteinModelPortal:P43610 SMR:P43610
DIP:DIP-5300N MINT:MINT-543614 STRING:P43610 PaxDb:P43610
PRIDE:P43610 EnsemblFungi:YFR038W GeneID:850599 KEGG:sce:YFR038W
CYGD:YFR038w OMA:FEIFNKW OrthoDB:EOG40S3Q6 NextBio:966463
Genevestigator:P43610 GermOnline:YFR038W Uniprot:P43610
Length = 853
Score = 391 (142.7 bits), Expect = 2.6e-35, P = 2.6e-35
Identities = 97/275 (35%), Positives = 143/275 (52%)
Query: 97 KREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDTEVQ---VEDKIKV 153
KRE I+ Q K K LN T + +D V + D I
Sbjct: 469 KREYIINCPMTSAQEKFYKAGLNGKLKKTMFKELIKDFFTLNDEYIGHVSNRSIRDFINY 528
Query: 154 EPCEN-SSNAQDVPSAEEKNVDEI------LHHVNVKMTNVTMVLRNIISHPYLINKPYR 206
+ N +SN + + +D++ + N K+ N+ M LR II +L PY
Sbjct: 529 KLSGNETSNTDNKINPTLLQMDKLYKKNLQMEISNKKLQNMMMQLRQIIDSTFLFYFPYL 588
Query: 207 IVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENY 266
E + E ++ +SGK+ +L +L+ L HK L++S V +L+ IE+ C L ++
Sbjct: 589 ----HPEDLTLETLLKTSGKLQILQKLIPPLISEGHKVLIYSQFVNMLDLIEDWCDLNSF 644
Query: 267 NYYRLHGSIRNEERNDAVQQFNGSTE-WGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQ 325
+R+ GS+ NE R D +++FN S + +FLLSTRA G G+NL ADT +L+DSDWNPQ
Sbjct: 645 ATFRIDGSVNNETRKDQLEKFNSSKDKHNIFLLSTRAAGLGINLVGADTVVLFDSDWNPQ 704
Query: 326 VDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFT 360
VD+QA RCHRIGQ PV +YRL +T + + T
Sbjct: 705 VDLQAMDRCHRIGQESPVIVYRLCCDNTIEHVILT 739
Score = 123 (48.4 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 28/63 (44%), Positives = 38/63 (60%)
Query: 1 MHNILKPFFLRRLKCDVNLN-LPPKKTTVIDCPMVPAQELMYTKVLTKTIGEN--REQVA 57
+H ILKPF LRRLK V N LPPK+ +I+CPM AQE Y L + + +E +
Sbjct: 445 LHTILKPFLLRRLKKVVLANILPPKREYIINCPMTSAQEKFYKAGLNGKLKKTMFKELIK 504
Query: 58 EYF 60
++F
Sbjct: 505 DFF 507
Score = 41 (19.5 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 21/74 (28%), Positives = 37/74 (50%)
Query: 87 LSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDTEVQ 146
L+ S +KA K + + LVQ+ S+ D + I F++ ++++ + TE Q
Sbjct: 765 LNEGSFLKANKAGVNVTNKDLVQE-----LSMLLMSDESNIG--FENGGQKENKA-TEGQ 816
Query: 147 VEDKIKVEPCENSS 160
+ DK +VE N S
Sbjct: 817 LTDK-EVEELTNRS 829
>CGD|CAL0005444 [details] [associations]
symbol:SNF2 species:5476 "Candida albicans" [GO:0016514
"SWI/SNF complex" evidence=IPI] [GO:0009405 "pathogenesis"
evidence=IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IEA] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IEA] [GO:0031492 "nucleosomal DNA
binding" evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA]
[GO:0044182 "filamentous growth of a population of unicellular
organisms" evidence=IMP] [GO:1900430 "positive regulation of
filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0036178 "filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900442 "positive regulation of filamentous growth of a
population of unicellular organisms in response to neutral pH"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] [GO:0042766 "nucleosome mobilization" evidence=IEA]
[GO:0005987 "sucrose catabolic process" evidence=IEA] [GO:1900231
"regulation of single-species biofilm formation on inanimate
substrate" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0042148 "strand invasion"
evidence=IEA] [GO:0044109 "cellular alcohol catabolic process"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0031496 "positive regulation of mating type
switching" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0006261 "DNA-dependent DNA
replication" evidence=IEA] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IEA] [GO:0036244 "cellular response to
neutral pH" evidence=IMP] [GO:0071216 "cellular response to biotic
stimulus" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 330 (121.2 bits), Expect = 2.8e-35, Sum P(2) = 2.8e-35
Identities = 67/178 (37%), Positives = 107/178 (60%)
Query: 180 VNVK-MTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLK 238
V +K N M L+ I +HP++ + +++ E ++ I +GK +L+++L K K
Sbjct: 1058 VTIKNANNQIMQLKKICNHPFVYEEVENLINPNIET--NDQIWRVAGKFELLDKVLPKFK 1115
Query: 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-STEWGVFL 297
T HK L+F M +++N +E+ Y RL G + ++R D ++ FN +++ FL
Sbjct: 1116 ATGHKVLIFFQMTQIMNIMEDFLRFRGMKYMRLDGGTKADDRTDLLKSFNAPDSDYFCFL 1175
Query: 298 LSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
LSTRAGG GLNL ADT I++D+DWNP D+QA+ R HRIGQ V I RL++ ++ +
Sbjct: 1176 LSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITENSVE 1233
Score = 97 (39.2 bits), Expect = 2.8e-35, Sum P(2) = 2.8e-35
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVL 45
+H +L+PF LRRLK DV +LP K V+ C Q +Y ++L
Sbjct: 997 LHKVLRPFLLRRLKKDVEKDLPNKVEKVVKCKSSALQSKLYQQML 1041
>UNIPROTKB|Q5AM49 [details] [associations]
symbol:SNF2 "Putative uncharacterized protein SNF2"
species:237561 "Candida albicans SC5314" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0009405
"pathogenesis" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=IPI] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0036178 "filamentous growth of a population of unicellular
organisms in response to neutral pH" evidence=IMP] [GO:0036180
"filamentous growth of a population of unicellular organisms in
response to biotic stimulus" evidence=IMP] [GO:0036244 "cellular
response to neutral pH" evidence=IMP] [GO:0044182 "filamentous
growth of a population of unicellular organisms" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
[GO:1900430 "positive regulation of filamentous growth of a
population of unicellular organisms" evidence=IMP] [GO:1900442
"positive regulation of filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 330 (121.2 bits), Expect = 2.8e-35, Sum P(2) = 2.8e-35
Identities = 67/178 (37%), Positives = 107/178 (60%)
Query: 180 VNVK-MTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLK 238
V +K N M L+ I +HP++ + +++ E ++ I +GK +L+++L K K
Sbjct: 1058 VTIKNANNQIMQLKKICNHPFVYEEVENLINPNIET--NDQIWRVAGKFELLDKVLPKFK 1115
Query: 239 QTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-STEWGVFL 297
T HK L+F M +++N +E+ Y RL G + ++R D ++ FN +++ FL
Sbjct: 1116 ATGHKVLIFFQMTQIMNIMEDFLRFRGMKYMRLDGGTKADDRTDLLKSFNAPDSDYFCFL 1175
Query: 298 LSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
LSTRAGG GLNL ADT I++D+DWNP D+QA+ R HRIGQ V I RL++ ++ +
Sbjct: 1176 LSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITENSVE 1233
Score = 97 (39.2 bits), Expect = 2.8e-35, Sum P(2) = 2.8e-35
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVL 45
+H +L+PF LRRLK DV +LP K V+ C Q +Y ++L
Sbjct: 997 LHKVLRPFLLRRLKKDVEKDLPNKVEKVVKCKSSALQSKLYQQML 1041
>SGD|S000005831 [details] [associations]
symbol:ISW2 "ATP-dependent DNA translocase involved in
chromatin remodeling" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0006338 "chromatin remodeling"
evidence=IEA;IGI;IMP;IPI] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0060195 "negative
regulation of antisense RNA transcription" evidence=IGI]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0008623
"CHRAC" evidence=ISS;IPI] [GO:0046020 "negative regulation of
transcription from RNA polymerase II promoter by pheromones"
evidence=IMP] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IMP] [GO:0015616 "DNA
translocase activity" evidence=IDA] [GO:0003697 "single-stranded
DNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000005831 GO:GO:0005524 EMBL:BK006948
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0003697
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006348
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0008623 GO:GO:0006369 GO:GO:0046020 GO:GO:0060195
GO:GO:0015616 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OrthoDB:EOG48SM27 EMBL:Z75212 PIR:S67208
RefSeq:NP_014948.1 ProteinModelPortal:Q08773 SMR:Q08773
DIP:DIP-6603N IntAct:Q08773 MINT:MINT-469536 STRING:Q08773
PaxDb:Q08773 PeptideAtlas:Q08773 PRIDE:Q08773 EnsemblFungi:YOR304W
GeneID:854480 KEGG:sce:YOR304W CYGD:YOR304w OMA:NEQSALS
NextBio:976792 Genevestigator:Q08773 GermOnline:YOR304W
Uniprot:Q08773
Length = 1120
Score = 392 (143.0 bits), Expect = 3.8e-35, P = 3.8e-35
Identities = 86/240 (35%), Positives = 140/240 (58%)
Query: 124 LTEIDRMFDSMIERDDTSDTEVQVEDKIKVEPCENSSNAQD--VPSAEEKNVDEILHHVN 181
+ ++ + + + R +D E + KI+ ++ Q S EK++D + V
Sbjct: 386 IQQLHSVLNPFLLRRVKADVEKSLLPKIETNVYVGMTDMQIQWYKSLLEKDIDAVNGAVG 445
Query: 182 -----VKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHK 236
++ N+ M LR +HPYL + + DE+++ +SGKMI+L++LL +
Sbjct: 446 KREGKTRLLNIVMQLRKCCNHPYL----FEGAEPGPPYTTDEHLIFNSGKMIILDKLLKR 501
Query: 237 LKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-STEWGV 295
LK+ + L+FS M ++L+ +E+ C ++ Y R+ GS +EER +A+ ++N ++E V
Sbjct: 502 LKEKGSRVLIFSQMSRLLDILEDYCYFRDFEYCRIDGSTSHEERIEAIDEYNKPNSEKFV 561
Query: 296 FLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
FLL+TRAGG G+NL ADT IL+DSDWNPQ D+QA R HRIGQ K V +YR V+ + +
Sbjct: 562 FLLTTRAGGLGINLVTADTVILFDSDWNPQADLQAMDRAHRIGQKKQVHVYRFVTENAIE 621
>RGD|1306794 [details] [associations]
symbol:Chd1 "chromodomain helicase DNA binding protein 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=ISO]
[GO:0035064 "methylated histone residue binding" evidence=ISO]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1306794 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006338 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 GeneTree:ENSGT00560000076896 OrthoDB:EOG4PG601
IPI:IPI00767719 Ensembl:ENSRNOT00000019358 UCSC:RGD:1306794
Uniprot:D4AAG9
Length = 904
Score = 333 (122.3 bits), Expect = 4.3e-35, Sum P(2) = 4.3e-35
Identities = 72/161 (44%), Positives = 107/161 (66%)
Query: 186 NVTMVLRNIISHPYLINKP-YRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKT 244
N+ M L+ +H YLI P K+E + ++++ SSGK+I+L++LL +L++ ++
Sbjct: 748 NIMMELKKCCNHCYLIKPPDNNEFYNKQEAL--QHLIRSSGKLILLDKLLIRLRERGNRV 805
Query: 245 LVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLSTRA 302
L+FS MV++L+ + E + + RL GSI E R A+ FN GS ++ FLLSTRA
Sbjct: 806 LIFSQMVRMLDILAEYLKYRQFPFQRLDGSI-GELRRQALDHFNAXGSEDF-CFLLSTRA 863
Query: 303 GGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPV 343
GG G+NL +ADT +++DSDWNPQ D+QA+AR HRIGQ K V
Sbjct: 864 GGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQV 904
Score = 84 (34.6 bits), Expect = 4.3e-35, Sum P(2) = 4.3e-35
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H L+PF LRR+K DV +LP K ++ M Q+ Y +LT+
Sbjct: 684 LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQYYKWILTR 730
>CGD|CAL0000831 [details] [associations]
symbol:orf19.1734 species:5476 "Candida albicans" [GO:0031011
"Ino80 complex" evidence=IEA] [GO:0042766 "nucleosome mobilization"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0043486
"histone exchange" evidence=IEA] [GO:0006348 "chromatin silencing
at telomere" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
CGD:CAL0000831 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006281 GO:GO:0006351 GO:GO:0016568
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000298 EMBL:AACQ01000297
RefSeq:XP_710247.1 RefSeq:XP_710254.1 STRING:Q59KI4 GeneID:3648140
GeneID:3648148 KEGG:cal:CaO19.1734 KEGG:cal:CaO19.9302 KO:K11665
Uniprot:Q59KI4
Length = 1387
Score = 332 (121.9 bits), Expect = 5.0e-35, Sum P(3) = 5.0e-35
Identities = 64/138 (46%), Positives = 91/138 (65%)
Query: 218 ENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRN 277
+ ++ SGK+ L++LL LK+ H+ L++ M +++ EE ++Y Y RL GS
Sbjct: 1229 DRFIAESGKLAKLDELLIDLKRGGHRILIYFQMTRMMQIFEEYLAYKSYKYIRLDGSTTI 1288
Query: 278 EERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRI 337
E R + VQ + + E +F+LSTRAGG GLNLT+ADT I YDSDWNP +D QA R HRI
Sbjct: 1289 ESRREMVQAWQTNPEIFIFMLSTRAGGLGLNLTSADTVIFYDSDWNPTIDSQAMDRAHRI 1348
Query: 338 GQTKPVCIYRLVSHSTYQ 355
GQTK V ++RLV+ +T +
Sbjct: 1349 GQTKQVKVFRLVTRNTIE 1366
Score = 76 (31.8 bits), Expect = 5.0e-35, Sum P(3) = 5.0e-35
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKV 44
+H ILKPF LRR+K +V L K + C + Q+ +Y ++
Sbjct: 890 LHMILKPFMLRRIKKNVQSELGDKVEIDVYCDLTTRQKKLYQQL 933
Score = 38 (18.4 bits), Expect = 5.0e-35, Sum P(3) = 5.0e-35
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 184 MTNVTMVLRNIISHPYLINK 203
+ N+ M R + +HP L +
Sbjct: 958 LANLVMQFRKVCNHPDLFER 977
>FB|FBgn0020306 [details] [associations]
symbol:dom "domino" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=IEA;NAS] [GO:0008283 "cell
proliferation" evidence=NAS] [GO:0016458 "gene silencing"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0002165 "instar larval or pupal development"
evidence=IMP] [GO:0006325 "chromatin organization" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035207 "negative regulation of hemocyte
proliferation" evidence=TAS] [GO:0030097 "hemopoiesis"
evidence=TAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000381 "regulation of alternative
mRNA splicing, via spliceosome" evidence=IMP] [GO:0000123 "histone
acetyltransferase complex" evidence=IPI] [GO:0045747 "positive
regulation of Notch signaling pathway" evidence=IGI] [GO:0035222
"wing disc pattern formation" evidence=IGI] [GO:0010629 "negative
regulation of gene expression" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0070983 "dendrite guidance"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP] [GO:2000637
"positive regulation of gene silencing by miRNA" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE013599 GO:GO:0005524
GO:GO:0006355 GO:GO:0003677 GO:GO:0035222 GO:GO:0048477
GO:GO:0016573 GO:GO:0045747 GO:GO:0006351 GO:GO:0007049
GO:GO:0035267 GO:GO:0004386 GO:GO:0030097 GO:GO:0043486
GO:GO:2000637 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016458 InterPro:IPR017877
PROSITE:PS50090 GO:GO:0070983 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 GO:GO:0000381 EMBL:AF076776 EMBL:AF254373
EMBL:AY058653 RefSeq:NP_524833.2 RefSeq:NP_788424.1 UniGene:Dm.7802
ProteinModelPortal:Q9NDJ2 SMR:Q9NDJ2 IntAct:Q9NDJ2 STRING:Q9NDJ2
PaxDb:Q9NDJ2 EnsemblMetazoa:FBtr0071603 GeneID:45655
KEGG:dme:Dmel_CG9696 UCSC:CG9696-RA CTD:45655 FlyBase:FBgn0020306
GeneTree:ENSGT00530000063427 InParanoid:Q9NDJ2 KO:K11320
OMA:TENDASA OrthoDB:EOG4C5B08 PhylomeDB:Q9NDJ2 GenomeRNAi:45655
NextBio:838265 Bgee:Q9NDJ2 GO:GO:0002165 GO:GO:0035207
Uniprot:Q9NDJ2
Length = 3198
Score = 343 (125.8 bits), Expect = 5.1e-35, Sum P(2) = 5.1e-35
Identities = 66/134 (49%), Positives = 91/134 (67%)
Query: 225 GKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAV 284
GK+ +++LL +LK H+ L+F+ M K+L+ +E + Y RL GS R E+R +
Sbjct: 1658 GKLQTMDRLLRQLKVNGHRVLIFTQMTKMLDVLEAFLNYHGHIYLRLDGSTRVEQRQILM 1717
Query: 285 QQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVC 344
++FNG F+LSTR+GG G+NLT ADT I YDSDWNP +D QA+ RCHRIGQT+ V
Sbjct: 1718 ERFNGDKRIFCFILSTRSGGVGINLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRDVH 1777
Query: 345 IYRLVSHSTYQVHL 358
IYRLVS T +V++
Sbjct: 1778 IYRLVSERTIEVNI 1791
Score = 88 (36.0 bits), Expect = 5.1e-35, Sum P(2) = 5.1e-35
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H +++PF LRRLK +V +P K VI C + Q +Y +++
Sbjct: 1125 LHKVIRPFLLRRLKKEVEKQMPKKYEHVITCRLSNRQRYLYEDFMSR 1171
>UNIPROTKB|A7Z019 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=ISS] [GO:0071564
"npBAF complex" evidence=ISS] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0071565 GO:GO:0000902
GO:GO:0004386 GO:GO:0001570 GO:GO:0035116 GO:GO:0005719
GO:GO:0030902 GO:GO:0048730 GO:GO:0000977 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347 GO:GO:0043966
GO:GO:0043388 KO:K11647 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
OrthoDB:EOG418BMJ EMBL:BC153216 IPI:IPI00693529
RefSeq:NP_001099084.1 UniGene:Bt.27590 ProteinModelPortal:A7Z019
SMR:A7Z019 STRING:A7Z019 PRIDE:A7Z019 GeneID:414274 KEGG:bta:414274
CTD:6597 InParanoid:A7Z019 NextBio:20818684 ArrayExpress:A7Z019
Uniprot:A7Z019
Length = 1606
Score = 323 (118.8 bits), Expect = 5.2e-35, Sum P(2) = 5.2e-35
Identities = 70/170 (41%), Positives = 104/170 (61%)
Query: 184 MTNVTMVLRNIISHPYL---INKPYRIVDG-KKEMVCDENIVSSSGKMIVLNQLLHKLKQ 239
+ N M LR I +HPY+ I + + G +V ++ +SGK +L+++L KL+
Sbjct: 1027 LMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRA 1086
Query: 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-STEWGVFLL 298
TNHK L+F M ++ +E+ + Y RL G+ + E+R ++ FN +E+ +FLL
Sbjct: 1087 TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLL 1146
Query: 299 STRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRL 348
STRAGG GLNL +ADT I++DSDWNP D+QA+ R HRIGQ V + RL
Sbjct: 1147 STRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRL 1196
Score = 101 (40.6 bits), Expect = 5.2e-35, Sum P(2) = 5.2e-35
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +L+PF LRRLK +V LP K VI C M Q ++Y + K +
Sbjct: 960 LHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGV 1008
>MGI|MGI:88192 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0000902 "cell morphogenesis" evidence=IMP]
[GO:0000977 "RNA polymerase II regulatory region sequence-specific
DNA binding" evidence=IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=ISO] [GO:0001570
"vasculogenesis" evidence=IMP] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0001832 "blastocyst growth"
evidence=IMP] [GO:0001835 "blastocyst hatching" evidence=IMP]
[GO:0001889 "liver development" evidence=IMP] [GO:0002039 "p53
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=ISO] [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin" evidence=IDA]
[GO:0005726 "perichromatin fibrils" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006337 "nucleosome disassembly" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO;IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IMP] [GO:0007403 "glial cell fate determination"
evidence=IMP] [GO:0007507 "heart development" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IMP] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA;TAS]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IMP;TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0022008 "neurogenesis" evidence=IDA] [GO:0030198 "extracellular
matrix organization" evidence=IMP] [GO:0030216 "keratinocyte
differentiation" evidence=IMP] [GO:0030308 "negative regulation of
cell growth" evidence=ISO] [GO:0030900 "forebrain development"
evidence=IMP] [GO:0030902 "hindbrain development" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=ISO] [GO:0032403
"protein complex binding" evidence=ISO] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IMP] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0043388
"positive regulation of DNA binding" evidence=IGI] [GO:0043923
"positive regulation by host of viral transcription" evidence=ISO]
[GO:0043966 "histone H3 acetylation" evidence=IMP] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;ISO;IMP] [GO:0047485
"protein N-terminus binding" evidence=ISO] [GO:0048562 "embryonic
organ morphogenesis" evidence=IMP] [GO:0048730 "epidermis
morphogenesis" evidence=IMP] [GO:0050681 "androgen receptor
binding" evidence=ISO] [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IMP] [GO:0060347 "heart trabecula formation" evidence=IGI]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=ISO] [GO:0070577 "histone acetyl-lysine binding"
evidence=ISO] [GO:0071564 "npBAF complex" evidence=ISO;IDA]
[GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778 "WINAC
complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 MGI:MGI:88192
GO:GO:0005524 GO:GO:0003714 GO:GO:0030216 GO:GO:0045944
GO:GO:0030198 GO:GO:0030900 GO:GO:0001889 EMBL:CH466522
GO:GO:0006351 GO:GO:0003682 GO:GO:0016887 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0000902 GO:GO:0004386 GO:GO:0001570 GO:GO:0035116
GO:GO:0005719 GO:GO:0030902 GO:GO:0048730 GO:GO:0000977
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0019827 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 KO:K11647 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 HOGENOM:HOG000172363
HOVERGEN:HBG056636 GO:GO:0035887 OrthoDB:EOG418BMJ CTD:6597
EMBL:AK147285 EMBL:AK160825 EMBL:AK166837 EMBL:BC079560
IPI:IPI00875789 IPI:IPI00955124 RefSeq:NP_001167549.1
RefSeq:NP_001167550.1 RefSeq:NP_035547.2 UniGene:Mm.286593
ProteinModelPortal:Q3TKT4 SMR:Q3TKT4 DIP:DIP-40650N DIP:DIP-59249N
IntAct:Q3TKT4 MINT:MINT-1958721 STRING:Q3TKT4 PhosphoSite:Q3TKT4
PaxDb:Q3TKT4 PRIDE:Q3TKT4 Ensembl:ENSMUST00000034707
Ensembl:ENSMUST00000098948 Ensembl:ENSMUST00000174008 GeneID:20586
KEGG:mmu:20586 UCSC:uc009omd.2 UCSC:uc009ome.2 InParanoid:Q3TUD7
NextBio:298883 Bgee:Q3TKT4 Genevestigator:Q3TKT4 Uniprot:Q3TKT4
Length = 1613
Score = 323 (118.8 bits), Expect = 5.2e-35, Sum P(2) = 5.2e-35
Identities = 70/170 (41%), Positives = 104/170 (61%)
Query: 184 MTNVTMVLRNIISHPYL---INKPYRIVDG-KKEMVCDENIVSSSGKMIVLNQLLHKLKQ 239
+ N M LR I +HPY+ I + + G +V ++ +SGK +L+++L KL+
Sbjct: 1035 LMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRA 1094
Query: 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-STEWGVFLL 298
TNHK L+F M ++ +E+ + Y RL G+ + E+R ++ FN +E+ +FLL
Sbjct: 1095 TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLL 1154
Query: 299 STRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRL 348
STRAGG GLNL +ADT I++DSDWNP D+QA+ R HRIGQ V + RL
Sbjct: 1155 STRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRL 1204
Score = 101 (40.6 bits), Expect = 5.2e-35, Sum P(2) = 5.2e-35
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +L+PF LRRLK +V LP K VI C M Q ++Y + K +
Sbjct: 968 LHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGV 1016
>RGD|621728 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0000792
"heterochromatin" evidence=ISO] [GO:0000902 "cell morphogenesis"
evidence=ISO] [GO:0000977 "RNA polymerase II regulatory region
sequence-specific DNA binding" evidence=ISO] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=ISO]
[GO:0001570 "vasculogenesis" evidence=ISO] [GO:0001701 "in utero
embryonic development" evidence=ISO] [GO:0001832 "blastocyst
growth" evidence=ISO] [GO:0001835 "blastocyst hatching"
evidence=ISO] [GO:0001889 "liver development" evidence=ISO]
[GO:0002039 "p53 binding" evidence=ISO] [GO:0003407 "neural retina
development" evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003713
"transcription coactivator activity" evidence=ISO] [GO:0003714
"transcription corepressor activity" evidence=ISO;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0005726 "perichromatin fibrils" evidence=ISO]
[GO:0006337 "nucleosome disassembly" evidence=ISO;IDA] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA;ISO] [GO:0007403 "glial cell fate determination"
evidence=ISO] [GO:0007507 "heart development" evidence=ISO]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=ISO] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0019827 "stem cell
maintenance" evidence=ISO] [GO:0022008 "neurogenesis" evidence=ISO]
[GO:0030198 "extracellular matrix organization" evidence=ISO]
[GO:0030216 "keratinocyte differentiation" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0030900 "forebrain development" evidence=ISO] [GO:0030902
"hindbrain development" evidence=ISO] [GO:0030957 "Tat protein
binding" evidence=ISO] [GO:0032403 "protein complex binding"
evidence=IDA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IDA] [GO:0043388 "positive regulation of DNA
binding" evidence=ISO] [GO:0043923 "positive regulation by host of
viral transcription" evidence=ISO] [GO:0043966 "histone H3
acetylation" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0047485 "protein
N-terminus binding" evidence=ISO] [GO:0048562 "embryonic organ
morphogenesis" evidence=ISO] [GO:0048730 "epidermis morphogenesis"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0051091 "positive regulation of sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0060318
"definitive erythrocyte differentiation" evidence=ISO] [GO:0060347
"heart trabecula formation" evidence=ISO] [GO:0060766 "negative
regulation of androgen receptor signaling pathway" evidence=ISO]
[GO:0070577 "histone acetyl-lysine binding" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO;ISS] [GO:0071565 "nBAF
complex" evidence=ISO;ISS] [GO:0071778 "WINAC complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0003714
GO:GO:0007399 GO:GO:0006355 GO:GO:0032403 GO:GO:0003677
GO:GO:0006351 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172363
HOVERGEN:HBG056636 EMBL:AJ504723 IPI:IPI00781891 UniGene:Rn.23417
ProteinModelPortal:Q8K1P7 SMR:Q8K1P7 IntAct:Q8K1P7 STRING:Q8K1P7
PhosphoSite:Q8K1P7 PRIDE:Q8K1P7 UCSC:RGD:621728 ArrayExpress:Q8K1P7
Genevestigator:Q8K1P7 Uniprot:Q8K1P7
Length = 1613
Score = 323 (118.8 bits), Expect = 5.2e-35, Sum P(2) = 5.2e-35
Identities = 70/170 (41%), Positives = 104/170 (61%)
Query: 184 MTNVTMVLRNIISHPYL---INKPYRIVDG-KKEMVCDENIVSSSGKMIVLNQLLHKLKQ 239
+ N M LR I +HPY+ I + + G +V ++ +SGK +L+++L KL+
Sbjct: 1035 LMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRA 1094
Query: 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-STEWGVFLL 298
TNHK L+F M ++ +E+ + Y RL G+ + E+R ++ FN +E+ +FLL
Sbjct: 1095 TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLL 1154
Query: 299 STRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRL 348
STRAGG GLNL +ADT I++DSDWNP D+QA+ R HRIGQ V + RL
Sbjct: 1155 STRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRL 1204
Score = 101 (40.6 bits), Expect = 5.2e-35, Sum P(2) = 5.2e-35
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +L+PF LRRLK +V LP K VI C M Q ++Y + K +
Sbjct: 968 LHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGV 1016
>UNIPROTKB|E2RJ89 [details] [associations]
symbol:SMARCA4 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6597 EMBL:AAEX03012414 RefSeq:XP_867683.1
Ensembl:ENSCAFT00000027907 GeneID:476710 KEGG:cfa:476710
OMA:HKPMESM Uniprot:E2RJ89
Length = 1614
Score = 323 (118.8 bits), Expect = 5.2e-35, Sum P(2) = 5.2e-35
Identities = 70/170 (41%), Positives = 104/170 (61%)
Query: 184 MTNVTMVLRNIISHPYL---INKPYRIVDG-KKEMVCDENIVSSSGKMIVLNQLLHKLKQ 239
+ N M LR I +HPY+ I + + G +V ++ +SGK +L+++L KL+
Sbjct: 1035 LMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRA 1094
Query: 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-STEWGVFLL 298
TNHK L+F M ++ +E+ + Y RL G+ + E+R ++ FN +E+ +FLL
Sbjct: 1095 TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLL 1154
Query: 299 STRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRL 348
STRAGG GLNL +ADT I++DSDWNP D+QA+ R HRIGQ V + RL
Sbjct: 1155 STRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRL 1204
Score = 101 (40.6 bits), Expect = 5.2e-35, Sum P(2) = 5.2e-35
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +L+PF LRRLK +V LP K VI C M Q ++Y + K +
Sbjct: 968 LHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGV 1016
>UNIPROTKB|G3V790 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4, isoform
CRA_b" species:10116 "Rattus norvegicus" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000977 "RNA
polymerase II regulatory region sequence-specific DNA binding"
evidence=IEA] [GO:0001570 "vasculogenesis" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001835
"blastocyst hatching" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IEA]
[GO:0007403 "glial cell fate determination" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0030198 "extracellular matrix organization" evidence=IEA]
[GO:0030216 "keratinocyte differentiation" evidence=IEA]
[GO:0030900 "forebrain development" evidence=IEA] [GO:0030902
"hindbrain development" evidence=IEA] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0043388 "positive
regulation of DNA binding" evidence=IEA] [GO:0043966 "histone H3
acetylation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048562 "embryonic organ morphogenesis" evidence=IEA]
[GO:0048730 "epidermis morphogenesis" evidence=IEA] [GO:0060318
"definitive erythrocyte differentiation" evidence=IEA] [GO:0060347
"heart trabecula formation" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:CH473993
UniGene:Rn.23417 Ensembl:ENSRNOT00000013165 Uniprot:G3V790
Length = 1614
Score = 323 (118.8 bits), Expect = 5.2e-35, Sum P(2) = 5.2e-35
Identities = 70/170 (41%), Positives = 104/170 (61%)
Query: 184 MTNVTMVLRNIISHPYL---INKPYRIVDG-KKEMVCDENIVSSSGKMIVLNQLLHKLKQ 239
+ N M LR I +HPY+ I + + G +V ++ +SGK +L+++L KL+
Sbjct: 1035 LMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRA 1094
Query: 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-STEWGVFLL 298
TNHK L+F M ++ +E+ + Y RL G+ + E+R ++ FN +E+ +FLL
Sbjct: 1095 TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLL 1154
Query: 299 STRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRL 348
STRAGG GLNL +ADT I++DSDWNP D+QA+ R HRIGQ V + RL
Sbjct: 1155 STRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRL 1204
Score = 101 (40.6 bits), Expect = 5.2e-35, Sum P(2) = 5.2e-35
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +L+PF LRRLK +V LP K VI C M Q ++Y + K +
Sbjct: 968 LHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGV 1016
>UNIPROTKB|F1M6Y4 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0005726
"perichromatin fibrils" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0007403 "glial cell fate
determination" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0010424 "DNA methylation on cytosine
within a CG sequence" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030900 "forebrain development"
evidence=IEA] [GO:0030902 "hindbrain development" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA] [GO:0043966 "histone H3 acetylation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0048730 "epidermis morphogenesis"
evidence=IEA] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IEA] [GO:0060347 "heart trabecula formation" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
GO:GO:0035887 IPI:IPI00951882 Ensembl:ENSRNOT00000060927
ArrayExpress:F1M6Y4 Uniprot:F1M6Y4
Length = 1618
Score = 323 (118.8 bits), Expect = 5.3e-35, Sum P(2) = 5.3e-35
Identities = 70/170 (41%), Positives = 104/170 (61%)
Query: 184 MTNVTMVLRNIISHPYL---INKPYRIVDG-KKEMVCDENIVSSSGKMIVLNQLLHKLKQ 239
+ N M LR I +HPY+ I + + G +V ++ +SGK +L+++L KL+
Sbjct: 1035 LMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRA 1094
Query: 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-STEWGVFLL 298
TNHK L+F M ++ +E+ + Y RL G+ + E+R ++ FN +E+ +FLL
Sbjct: 1095 TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLL 1154
Query: 299 STRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRL 348
STRAGG GLNL +ADT I++DSDWNP D+QA+ R HRIGQ V + RL
Sbjct: 1155 STRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRL 1204
Score = 101 (40.6 bits), Expect = 5.3e-35, Sum P(2) = 5.3e-35
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +L+PF LRRLK +V LP K VI C M Q ++Y + K +
Sbjct: 968 LHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGV 1016
>UNIPROTKB|P51532 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0047485 "protein N-terminus binding" evidence=IPI] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0003714 "transcription
corepressor activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0071564 "npBAF complex" evidence=ISS;IDA]
[GO:0071565 "nBAF complex" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=IC;IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IDA] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0071778 "WINAC complex"
evidence=IDA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP;IDA] [GO:0030308 "negative regulation
of cell growth" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IGI;IDA]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=IMP] [GO:0050681 "androgen receptor binding"
evidence=IPI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IGI] [GO:0045749 "negative regulation of S phase of
mitotic cell cycle" evidence=TAS] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0002039 "p53 binding" evidence=IPI]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0003713 "transcription
coactivator activity" evidence=IMP;NAS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=NAS]
[GO:0006337 "nucleosome disassembly" evidence=IDA] [GO:0043923
"positive regulation by host of viral transcription" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=IPI] [GO:0003407 "neural
retina development" evidence=IEP] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0003714 GO:GO:0007399
GO:GO:0051091 GO:GO:0030308 GO:GO:0003677 GO:GO:0006338
GO:GO:0000122 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0003407 GO:GO:0071565 GO:GO:0004386 EMBL:CH471106
GO:GO:0001105 GO:GO:0045749 Orphanet:1465 GO:GO:0006337
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GO:GO:0071778 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:AC011442 GO:GO:0008094 GO:GO:0060766
GO:GO:0043923 EMBL:AC011485 HOGENOM:HOG000172363 HOVERGEN:HBG056636
CTD:6597 EMBL:U29175 EMBL:D26156 EMBL:AF254822 EMBL:EU430756
EMBL:EU430757 EMBL:EU430758 EMBL:EU430759 EMBL:AC006127
IPI:IPI00293426 IPI:IPI00900285 IPI:IPI00900328 IPI:IPI00900338
IPI:IPI01016040 PIR:S45252 RefSeq:NP_001122316.1
RefSeq:NP_001122317.1 RefSeq:NP_001122318.1 RefSeq:NP_001122319.1
RefSeq:NP_001122320.1 RefSeq:NP_003063.2 UniGene:Hs.327527 PDB:2GRC
PDB:2H60 PDB:3UVD PDBsum:2GRC PDBsum:2H60 PDBsum:3UVD
ProteinModelPortal:P51532 SMR:P51532 DIP:DIP-24249N IntAct:P51532
MINT:MINT-204078 STRING:P51532 PhosphoSite:P51532 DMDM:116242792
PaxDb:P51532 PRIDE:P51532 Ensembl:ENST00000344626
Ensembl:ENST00000413806 Ensembl:ENST00000429416
Ensembl:ENST00000444061 Ensembl:ENST00000450717
Ensembl:ENST00000541122 GeneID:6597 KEGG:hsa:6597 UCSC:uc002mqf.4
GeneCards:GC19P011071 HGNC:HGNC:11100 HPA:CAB004208 MIM:603254
MIM:613325 MIM:614609 neXtProt:NX_P51532 Orphanet:231108
PharmGKB:PA35950 ChiTaRS:SMARCA4 EvolutionaryTrace:P51532
GenomeRNAi:6597 NextBio:25661 ArrayExpress:P51532 Bgee:P51532
CleanEx:HS_SMARCA4 Genevestigator:P51532 GermOnline:ENSG00000127616
Uniprot:P51532
Length = 1647
Score = 323 (118.8 bits), Expect = 5.5e-35, Sum P(2) = 5.5e-35
Identities = 70/170 (41%), Positives = 104/170 (61%)
Query: 184 MTNVTMVLRNIISHPYL---INKPYRIVDG-KKEMVCDENIVSSSGKMIVLNQLLHKLKQ 239
+ N M LR I +HPY+ I + + G +V ++ +SGK +L+++L KL+
Sbjct: 1035 LMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRA 1094
Query: 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-STEWGVFLL 298
TNHK L+F M ++ +E+ + Y RL G+ + E+R ++ FN +E+ +FLL
Sbjct: 1095 TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLL 1154
Query: 299 STRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRL 348
STRAGG GLNL +ADT I++DSDWNP D+QA+ R HRIGQ V + RL
Sbjct: 1155 STRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRL 1204
Score = 101 (40.6 bits), Expect = 5.5e-35, Sum P(2) = 5.5e-35
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +L+PF LRRLK +V LP K VI C M Q ++Y + K +
Sbjct: 968 LHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGV 1016
>UNIPROTKB|Q9HBD4 [details] [associations]
symbol:SMARCA4 "SMARCA4 isoform 2" species:9606 "Homo
sapiens" [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005719 "nuclear
euchromatin" evidence=IEA] [GO:0005726 "perichromatin fibrils"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0030198 "extracellular matrix organization"
evidence=IEA] [GO:0030216 "keratinocyte differentiation"
evidence=IEA] [GO:0030900 "forebrain development" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048562 "embryonic organ morphogenesis"
evidence=IEA] [GO:0048730 "epidermis morphogenesis" evidence=IEA]
[GO:0060318 "definitive erythrocyte differentiation" evidence=IEA]
[GO:0060347 "heart trabecula formation" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0071565 "nBAF complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
EMBL:CH471106 GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792
GO:GO:0060347 GO:GO:0043966 GO:GO:0043388 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:AC011442
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 EMBL:AC011485
GO:GO:0005726 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
CTD:6597 EMBL:AF254822 EMBL:AC006127 UniGene:Hs.327527 GeneID:6597
KEGG:hsa:6597 HGNC:HGNC:11100 PharmGKB:PA35950 ChiTaRS:SMARCA4
GenomeRNAi:6597 NextBio:25661 IPI:IPI00900269 RefSeq:NP_001122321.1
SMR:Q9HBD4 STRING:Q9HBD4 Ensembl:ENST00000358026 UCSC:uc010dxo.3
Uniprot:Q9HBD4
Length = 1679
Score = 323 (118.8 bits), Expect = 5.8e-35, Sum P(2) = 5.8e-35
Identities = 70/170 (41%), Positives = 104/170 (61%)
Query: 184 MTNVTMVLRNIISHPYL---INKPYRIVDG-KKEMVCDENIVSSSGKMIVLNQLLHKLKQ 239
+ N M LR I +HPY+ I + + G +V ++ +SGK +L+++L KL+
Sbjct: 1035 LMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRA 1094
Query: 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-STEWGVFLL 298
TNHK L+F M ++ +E+ + Y RL G+ + E+R ++ FN +E+ +FLL
Sbjct: 1095 TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYFIFLL 1154
Query: 299 STRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRL 348
STRAGG GLNL +ADT I++DSDWNP D+QA+ R HRIGQ V + RL
Sbjct: 1155 STRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRL 1204
Score = 101 (40.6 bits), Expect = 5.8e-35, Sum P(2) = 5.8e-35
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +L+PF LRRLK +V LP K VI C M Q ++Y + K +
Sbjct: 968 LHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGV 1016
>SGD|S000001388 [details] [associations]
symbol:STH1 "ATPase component of the RSC chromatin remodeling
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0007126 "meiosis" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IMP] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0006337 "nucleosome
disassembly" evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IMP] [GO:0007010 "cytoskeleton organization"
evidence=IGI;IMP] [GO:0031055 "chromatin remodeling at centromere"
evidence=IMP] [GO:0007059 "chromosome segregation" evidence=IGI]
[GO:0016586 "RSC complex" evidence=IDA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000086 "G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0015616 "DNA translocase activity" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SGD:S000001388 GO:GO:0005524 GO:GO:0007126 GO:GO:0000086
GO:GO:0007010 GO:GO:0007059 GO:GO:0000775 GO:GO:0006355
EMBL:BK006942 GO:GO:0006302 GO:GO:0004386 GO:GO:0006368
GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0043044 GO:GO:0016584
EMBL:DQ115392 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
GO:GO:0070577 InterPro:IPR018359 EMBL:Z46833 InterPro:IPR014012
PROSITE:PS51204 GeneTree:ENSGT00670000098110 HOGENOM:HOG000172362
GO:GO:0015616 GO:GO:0031055 KO:K11786 OrthoDB:EOG4D565R EMBL:D10595
EMBL:M83755 PIR:S49883 RefSeq:NP_012140.1 ProteinModelPortal:P32597
SMR:P32597 DIP:DIP-5889N IntAct:P32597 MINT:MINT-615490
STRING:P32597 PaxDb:P32597 PeptideAtlas:P32597 EnsemblFungi:YIL126W
GeneID:854680 KEGG:sce:YIL126W CYGD:YIL126w OMA:MEDFLRM
NextBio:977286 Genevestigator:P32597 GermOnline:YIL126W
Uniprot:P32597
Length = 1359
Score = 322 (118.4 bits), Expect = 6.7e-35, Sum P(2) = 6.7e-35
Identities = 65/168 (38%), Positives = 105/168 (62%)
Query: 184 MTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHK 243
+ N M LR I +HP++ ++ +V+ + + + +GK +L+++L K K + H+
Sbjct: 752 LNNKIMQLRKICNHPFVFDEVEGVVNPSRGN--SDLLFRVAGKFELLDRVLPKFKASGHR 809
Query: 244 TLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-STEWGVFLLSTRA 302
L+F M +V++ +E+ +++ Y RL GS + EER + + FN +++ FLLSTRA
Sbjct: 810 VLMFFQMTQVMDIMEDFLRMKDLKYMRLDGSTKTEERTEMLNAFNAPDSDYFCFLLSTRA 869
Query: 303 GGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVS 350
GG GLNL ADT I++D+DWNP D+QA+ R HRIGQ V I RL++
Sbjct: 870 GGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLIT 917
Score = 99 (39.9 bits), Expect = 6.7e-35, Sum P(2) = 6.7e-35
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVL 45
+H +L+PF LRRLK +V +LP K VI C + Q+ +Y ++L
Sbjct: 686 LHKVLRPFLLRRLKKEVEKDLPDKVEKVIKCKLSGLQQQLYQQML 730
Score = 71 (30.1 bits), Expect = 0.00067, Sum P(2) = 0.00067
Identities = 28/112 (25%), Positives = 46/112 (41%)
Query: 82 SEESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTS 141
SE S + N S A E D + KRR +T + + ++ E
Sbjct: 1115 SETSLIENNSFTAAVDEETNADKETTASRSKRRSSRKKRTISIVTAEDKENTQEESTSQE 1174
Query: 142 DTEVQVEDKIKVEPCENSSNAQDVPSAEEKNVDEILHHVNVKMTNVTMVLRN 193
+ +VE+++K SS+ + + +E K L V +K+ N T VL N
Sbjct: 1175 NGGAKVEEEVK------SSSVEIINGSESKKKKPKLT-VKIKL-NKTTVLEN 1218
>WB|WBGene00007027 [details] [associations]
symbol:ssl-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003677 GO:GO:0040011 GO:GO:0016568 GO:GO:0040035
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427 KO:K11320
EMBL:AL132904 EMBL:AY551965 RefSeq:NP_001255179.1
RefSeq:NP_001255180.1 RefSeq:NP_001255181.1 RefSeq:NP_001255182.1
UniGene:Cel.203 ProteinModelPortal:Q9NEL2 SMR:Q9NEL2
MINT:MINT-3384018 PaxDb:Q9NEL2 EnsemblMetazoa:Y111B2A.22a
GeneID:190954 KEGG:cel:CELE_Y111B2A.22 UCSC:Y111B2A.22 CTD:190954
WormBase:Y111B2A.22a WormBase:Y111B2A.22b WormBase:Y111B2A.22c
WormBase:Y111B2A.22d InParanoid:Q9NEL2 OMA:HLACSES NextBio:947488
ArrayExpress:Q9NEL2 Uniprot:Q9NEL2
Length = 2395
Score = 314 (115.6 bits), Expect = 2.2e-34, Sum P(3) = 2.2e-34
Identities = 61/134 (45%), Positives = 87/134 (64%)
Query: 225 GKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAV 284
GK+ L LL +L H+ L+F+ M K+L+ ++ Y Y+RL G+ E+R +
Sbjct: 1188 GKLQTLAVLLRQLYLYKHRCLIFTQMSKMLDVLQTFLSHHGYQYFRLDGTTGVEQRQAMM 1247
Query: 285 QQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVC 344
++FN + F+LSTR+GG G+NLT ADT I YDSDWNP +D QA+ RCHRIGQT+ V
Sbjct: 1248 ERFNADPKVFCFILSTRSGGVGVNLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRNVS 1307
Query: 345 IYRLVSHSTYQVHL 358
IYRL+S T + ++
Sbjct: 1308 IYRLISERTIEENI 1321
Score = 95 (38.5 bits), Expect = 2.2e-34, Sum P(3) = 2.2e-34
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H +L+PF LRRLK +V LP K +++C + Q +Y +++
Sbjct: 769 LHKVLRPFILRRLKKEVEKQLPEKTEHIVNCSLSKRQRYLYDDFMSR 815
Score = 41 (19.5 bits), Expect = 8.7e-29, Sum P(3) = 8.7e-29
Identities = 16/69 (23%), Positives = 31/69 (44%)
Query: 108 VQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEPCENSSNAQDVPS 167
+++ K RK + + EID S ++ TS +++ E +++ +P N
Sbjct: 446 LEEQKARKEACGDNEEKMEIDESPSSDAQKPSTSSSDLTAE-QLQ-DPTAEDGNGDGHGV 503
Query: 168 AEEKNVDEI 176
E NVD +
Sbjct: 504 LE--NVDYV 510
Score = 40 (19.1 bits), Expect = 2.2e-34, Sum P(3) = 2.2e-34
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIV 208
+ + N+ M LR +HP L +P +V
Sbjct: 828 MSVLNIVMQLRKCCNHPNLF-EPRPVV 853
Score = 37 (18.1 bits), Expect = 2.2e-28, Sum P(3) = 2.2e-28
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 150 KIKVEPCENSSNAQD--VPSAE--EKNVD 174
++K+E E S+ AQ +PS E NV+
Sbjct: 172 EVKIEDSEGSNTAQPSVLPSCGGGETNVE 200
>ASPGD|ASPL0000056677 [details] [associations]
symbol:AN1024 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0006312 "mitotic
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:BN001308 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000172362 EnsemblFungi:CADANIAT00001623 OMA:NNITELW
Uniprot:C8VTY9
Length = 868
Score = 382 (139.5 bits), Expect = 2.6e-34, P = 2.6e-34
Identities = 96/277 (34%), Positives = 149/277 (53%)
Query: 82 SEESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNKTY-DLTEIDRMFDSMIER-DD 139
+ S +S + R+ T S +RRK +TY D++ DR F+S + + +
Sbjct: 498 ASSSVVSTPNKSVRSSRDSTPGSR--ASSTRRRKAP--QTYKDIS--DREFNSKLRKLEQ 551
Query: 140 TSDTEVQVEDKIKVEPCENSSNAQDVPSAEEKNVDEILHHVNVKMTNVTMVLRNIISHPY 199
+ ++ +E+ I E A + A+ EI KM N M R + P+
Sbjct: 552 GLEEDLDIEESIDESEQEEIERANTIKLAKR----EIAQK---KMQNPVMQARLACNSPH 604
Query: 200 LINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEE 259
P+ + DE +V++SGKM++L++L+ L HK L+FS L+ +++
Sbjct: 605 NFYWPW----AEDPSSIDETLVTASGKMLLLDRLIPCLLNKGHKILIFSQFKTQLDILQD 660
Query: 260 LCV-LENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILY 318
L ++N R+ G+I +R ++ FN ++ +FLLSTRAGGQG+NL AADT IL+
Sbjct: 661 WATHLRSWNCCRIDGAISQADRQAQIKAFNTDKDYKIFLLSTRAGGQGINLVAADTVILF 720
Query: 319 DSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
DSDWNPQ D+QA+ R HRIGQTKPV +YRL + T +
Sbjct: 721 DSDWNPQQDLQAQDRAHRIGQTKPVIVYRLATKGTVE 757
Score = 124 (48.7 bits), Expect = 0.00023, P = 0.00023
Identities = 52/207 (25%), Positives = 86/207 (41%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTIGENREQVAEYF 60
MH+ILKPF LRR+K DV LP K+ ++ P+ Q+ +Y ++L G R+ + E
Sbjct: 421 MHSILKPFLLRRVKTDVESALPKKREYILYAPLTLEQKDLYREILN---GTGRQYLEEK- 476
Query: 61 XXXXXXXXXXXXXXXXXYIWFSEESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNK 120
+ S +S + R+ T S +RRK +
Sbjct: 477 ATERLMAKNGMISRPRSLKRSASSSVVSTPNKSVRSSRDSTPGSR--ASSTRRRKAP--Q 532
Query: 121 TY-DLTEIDRMFDSMIER-DDTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEKNVDEILH 178
TY D++ DR F+S + + + + ++ +E+ I E A + A+ EI
Sbjct: 533 TYKDIS--DREFNSKLRKLEQGLEEDLDIEESIDESEQEEIERANTIKLAKR----EIAQ 586
Query: 179 HVNVKMTNVTMVLRNIISHPYLINKPY 205
KM N M R + P+ P+
Sbjct: 587 K---KMQNPVMQARLACNSPHNFYWPW 610
>SGD|S000003118 [details] [associations]
symbol:INO80 "ATPase and nucleosome spacing factor"
species:4932 "Saccharomyces cerevisiae" [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;IMP;IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0042766 "nucleosome mobilization" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IDA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IMP] [GO:0016584
"nucleosome positioning" evidence=IDA] [GO:0031011 "Ino80 complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 SGD:S000003118
GO:GO:0005524 EMBL:BK006941 GO:GO:0003677 GO:GO:0006281
GO:GO:0045944 GO:GO:0016887 GO:GO:0006366 GO:GO:0031011
GO:GO:0006348 GO:GO:0004386 GO:GO:0043486 GO:GO:0042766 EMBL:Z48618
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:X99960 GO:GO:0016584 GO:GO:0043618 KO:K11665
GeneTree:ENSGT00680000100052 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
EMBL:Z72672 PIR:S60416 RefSeq:NP_011365.1 ProteinModelPortal:P53115
SMR:P53115 DIP:DIP-1386N IntAct:P53115 MINT:MINT-388693
STRING:P53115 PaxDb:P53115 PeptideAtlas:P53115 EnsemblFungi:YGL150C
GeneID:852728 KEGG:sce:YGL150C CYGD:YGL150c OMA:DEFSDWF
NextBio:972117 Genevestigator:P53115 GermOnline:YGL150C
Uniprot:P53115
Length = 1489
Score = 337 (123.7 bits), Expect = 2.8e-34, Sum P(2) = 2.8e-34
Identities = 65/138 (47%), Positives = 90/138 (65%)
Query: 218 ENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRN 277
+ ++ S K+ L++LL KLK H+ L++ M K+++ +EE YN+ RL GS +
Sbjct: 1292 DRFITESAKLRKLDELLVKLKSEGHRVLIYFQMTKMMDLMEEYLTYRQYNHIRLDGSSKL 1351
Query: 278 EERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRI 337
E+R D V + + E VFLLSTRAGG G+NLTAADT I YDSDWNP +D QA R HR+
Sbjct: 1352 EDRRDLVHDWQTNPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRL 1411
Query: 338 GQTKPVCIYRLVSHSTYQ 355
GQT+ V +YRL+ T +
Sbjct: 1412 GQTRQVTVYRLLVRGTIE 1429
Score = 79 (32.9 bits), Expect = 2.8e-34, Sum P(2) = 2.8e-34
Identities = 20/56 (35%), Positives = 29/56 (51%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTIGENREQV 56
+H ILKPF LRR+K +V L K + C + Q +Y +VL I N + +
Sbjct: 924 LHMILKPFMLRRVKKNVQSELGDKIEIDVLCDLTQRQAKLY-QVLKSQISTNYDAI 978
Score = 46 (21.3 bits), Expect = 8.0e-31, Sum P(2) = 8.0e-31
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 142 DTEVQVEDKIKVEPCENSSNAQDVPSAEEKNVDEILHHVN 181
D + + ++++++ EN+SNA A+ K D+ H N
Sbjct: 636 DFDNENDEQLRLRAAENASNALAETRAKAKQFDD---HAN 672
>CGD|CAL0001763 [details] [associations]
symbol:orf19.1871 species:5476 "Candida albicans" [GO:0000812
"Swr1 complex" evidence=IEA] [GO:0005198 "structural molecule
activity" evidence=IEA] [GO:0043486 "histone exchange"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
CGD:CAL0001763 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0016568 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
EMBL:AACQ01000133 EMBL:AACQ01000132 RefSeq:XP_713128.1
RefSeq:XP_713174.1 ProteinModelPortal:Q59U81 STRING:Q59U81
PRIDE:Q59U81 GeneID:3645174 GeneID:3645220 KEGG:cal:CaO19.1871
KEGG:cal:CaO19.9427 KO:K11681 Uniprot:Q59U81
Length = 1641
Score = 322 (118.4 bits), Expect = 1.3e-33, Sum P(2) = 1.3e-33
Identities = 66/160 (41%), Positives = 96/160 (60%)
Query: 201 INKPYRIVDGKKEMVC-DENIVS-SSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIE 258
I+ P+ K + D+ ++ GK+ L LL +L H+ L+F+ M KVL+ +E
Sbjct: 1340 IDNPFHKAQVKLSIAFPDKTLLQYDCGKLQKLATLLQELTSQGHRALIFTQMTKVLDILE 1399
Query: 259 ELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILY 318
+ + Y Y RL G+ + E+R ++FN + VF+LSTR+GG G+NLT ADT I Y
Sbjct: 1400 QFLNIHGYRYMRLDGATKIEDRQLLTEKFNRDPKIPVFILSTRSGGLGINLTGADTVIFY 1459
Query: 319 DSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHL 358
DSDWNP +D Q + RCHRIGQ + V IYR VS T + ++
Sbjct: 1460 DSDWNPAMDKQCQDRCHRIGQVRDVHIYRFVSEYTIESNI 1499
Score = 89 (36.4 bits), Expect = 1.3e-33, Sum P(2) = 1.3e-33
Identities = 17/57 (29%), Positives = 32/57 (56%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTIGENREQVA 57
+H +L+P+ LRRLK DV +P K ++ C + Q +Y +++ + +E +A
Sbjct: 1061 LHQVLRPYLLRRLKKDVEKQMPGKYEHIVYCRLSKRQRFLYDDFMSRA--KTKETLA 1115
Score = 48 (22.0 bits), Expect = 2.5e-29, Sum P(2) = 2.5e-29
Identities = 15/66 (22%), Positives = 29/66 (43%)
Query: 99 EQTIDSNQLVQQPKRRKCS-LNKTYDLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEP-- 155
E + + +L++ + S +N D + + DS + +SDTE+ + + P
Sbjct: 676 EYSAEEKKLIEDLNQESDSRMNSLLDSDSVSSISDSESSEESSSDTEMD-QSTVSEPPRS 734
Query: 156 CENSSN 161
E SN
Sbjct: 735 SETGSN 740
Score = 39 (18.8 bits), Expect = 2.2e-28, Sum P(2) = 2.2e-28
Identities = 28/125 (22%), Positives = 48/125 (38%)
Query: 80 WFSEESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDD 139
WF + AG + ID N+ Q K + + N L ++ R + + R
Sbjct: 1020 WFGKPVNRI-LEQTSAGNSD-LIDENERTTQ-KMDEETRNTVARLHQVLRPY---LLRRL 1073
Query: 140 TSDTEVQVEDKIK-VEPCENSSNAQ---DVPSAEEKNVDEILHHVNVKMTNVTMVLRNII 195
D E Q+ K + + C S + D + K + + + + N M LR +
Sbjct: 1074 KKDVEKQMPGKYEHIVYCRLSKRQRFLYDDFMSRAKTKETLASGNFLSIINCLMQLRKVC 1133
Query: 196 SHPYL 200
+HP L
Sbjct: 1134 NHPDL 1138
>POMBASE|SPAC29B12.01 [details] [associations]
symbol:ino80 "SNF2 family helicase Ino80" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=ISO] [GO:0006338 "chromatin remodeling" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IDA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 PomBase:SPAC29B12.01 GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0006351 GO:GO:0016568 GO:GO:0031011 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 KO:K11665 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
RefSeq:NP_001018299.1 ProteinModelPortal:O14148 STRING:O14148
EnsemblFungi:SPAC29B12.01.1 GeneID:3361566 KEGG:spo:SPAC29B12.01
OMA:INDHNSA NextBio:20811604 Uniprot:O14148
Length = 1604
Score = 331 (121.6 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
Identities = 63/135 (46%), Positives = 88/135 (65%)
Query: 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEER 280
++ SGK+ L++LL +LK +H+ L++ M ++++ +EE Y Y RL GS + +R
Sbjct: 1425 IADSGKLSKLDKLLVELKANDHRVLIYFQMTRMIDLMEEYLTFRQYKYLRLDGSSKISQR 1484
Query: 281 NDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQT 340
D V ++ E VFLLSTRAGG G+NLTAADT I YDSDWNP +D QA R HRIGQ
Sbjct: 1485 RDMVTEWQTRPELFVFLLSTRAGGLGINLTAADTVIFYDSDWNPSIDSQAMDRAHRIGQQ 1544
Query: 341 KPVCIYRLVSHSTYQ 355
K V +YR ++ T +
Sbjct: 1545 KQVTVYRFITRGTIE 1559
Score = 78 (32.5 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMY 41
+H ILKPF LRR+K +V L K + C + Q+++Y
Sbjct: 1060 LHMILKPFMLRRVKKNVQSELGEKIEKEVYCDLTQRQKILY 1100
Score = 45 (20.9 bits), Expect = 5.4e-30, Sum P(2) = 5.4e-30
Identities = 9/36 (25%), Positives = 24/36 (66%)
Query: 82 SEESTLSNASSVKAGKREQTIDS--NQLVQQPKRRK 115
S E T +NA++ K+++T+++ Q++++ R++
Sbjct: 599 STEDTKANATASAPNKKKKTVETLQQQVIKEIARKE 634
>TAIR|locus:2116747 [details] [associations]
symbol:PKR2 "PICKLE RELATED 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 EMBL:CP002687
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI00523018 RefSeq:NP_194918.2 UniGene:At.54572
ProteinModelPortal:F4JTF6 SMR:F4JTF6 PRIDE:F4JTF6
EnsemblPlants:AT4G31900.1 GeneID:829320 KEGG:ath:AT4G31900
OMA:SYWESES ArrayExpress:F4JTF6 Uniprot:F4JTF6
Length = 1202
Score = 371 (135.7 bits), Expect = 7.5e-33, P = 7.5e-33
Identities = 90/253 (35%), Positives = 141/253 (55%)
Query: 118 LNKTYDLTEIDRMFDSMIERDDTSDTEVQVEDKI--KVE---PCENSSNAQDVPSAEEKN 172
+NK ++ + +M + R D ++DK+ K E + SS ++V A N
Sbjct: 416 INKEEQISRLHQMLAPHLLRRLKKDV---LKDKVPPKKELILRVDMSSQQKEVYKAVITN 472
Query: 173 VDEILHHV-NVKMTNVTMVLRNIISHPYLIN--KPYRIVDGKKEMVCDENIVSSSGKMIV 229
++L + K++NV M LR + SHPYL+ +P R D + ++ +SGK+ +
Sbjct: 473 NYQVLTKKRDAKISNVLMKLRQVCSHPYLLPDFEP-RFEDANEAFT---KLLEASGKLQL 528
Query: 230 LNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG 289
L++++ KLK+ H+ L+++ L +E+ +N+NY R+ G I ER + +FN
Sbjct: 529 LDKMMVKLKEQGHRVLIYTQFQHTLYLLEDYFTFKNWNYERIDGKISGPERQVRIDRFNA 588
Query: 290 -STEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRL 348
++ FLLSTRAGG G+NL ADT I+YDSDWNP D+QA AR HR+GQT V IYRL
Sbjct: 589 ENSNRFCFLLSTRAGGIGINLATADTVIIYDSDWNPHADLQAMARVHRLGQTNKVMIYRL 648
Query: 349 VSHSTYQVHLFTI 361
+ T + + I
Sbjct: 649 IHKGTVEERMMEI 661
>POMBASE|SPBP35G2.10 [details] [associations]
symbol:mit1 "SHREC complex subunit Mit1" species:4896
"Schizosaccharomyces pombe" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0000183 "chromatin silencing at rDNA" evidence=IMP] [GO:0000790
"nuclear chromatin" evidence=IC] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISM] [GO:0005524 "ATP binding" evidence=ISM;IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005721 "centromeric
heterochromatin" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0006342 "chromatin silencing" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IMP] [GO:0016887 "ATPase
activity" evidence=IDA] [GO:0019787 "small conjugating protein
ligase activity" evidence=ISM] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IMP] [GO:0030702 "chromatin
silencing at centromere" evidence=IMP] [GO:0031933 "telomeric
heterochromatin" evidence=IDA] [GO:0031934 "mating-type region
heterochromatin" evidence=IDA] [GO:0033553 "rDNA heterochromatin"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0070824 "SHREC complex" evidence=IDA] InterPro:IPR001841
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR001965
InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50016
PROSITE:PS50089 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00490 PomBase:SPBP35G2.10 Prosite:PS00518 GO:GO:0005524
GO:GO:0044732 GO:GO:0046872 GO:GO:0003677 EMBL:CU329671
GO:GO:0008270 GenomeReviews:CU329671_GR GO:GO:0006338 GO:GO:0030466
GO:GO:0000122 GO:GO:0000790 GO:GO:0030702 GO:GO:0000183
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786 PROSITE:PS01359
GO:GO:0005721 GO:GO:0031934 InterPro:IPR016197 SUPFAM:SSF54160
HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016584 GO:GO:0019787 GO:GO:0033553
GO:GO:0016581 GO:GO:0031933 RefSeq:NP_595385.1
ProteinModelPortal:Q9P793 STRING:Q9P793 EnsemblFungi:SPBP35G2.10.1
GeneID:2541336 KEGG:spo:SPBP35G2.10 OrthoDB:EOG4GQTD1
NextBio:20802445 Uniprot:Q9P793
Length = 1418
Score = 287 (106.1 bits), Expect = 8.1e-33, Sum P(2) = 8.1e-33
Identities = 62/173 (35%), Positives = 98/173 (56%)
Query: 184 MTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHK 243
+ N+ M LR ++HPY+ + + E+ ++ +S K ++L L+ KL H+
Sbjct: 831 LNNILMQLRKTLAHPYIYSPDIEDRNLPYELAM-RSLEEASCKFLILRLLVPKLITRGHR 889
Query: 244 TLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG-STEWGVFLLSTRA 302
L+FS ++ L+ +E+ +N Y R G+ ER A+ FN ++E FLLSTRA
Sbjct: 890 ILLFSQFIQQLDILEDWFEYKNIAYARFDGASSEMERQSAIDSFNAPNSELSCFLLSTRA 949
Query: 303 GGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
GG G+NL +ADT I+ D D+NP D+QA AR HR GQ K V ++ L + + +
Sbjct: 950 GGVGINLASADTVIILDPDFNPHQDMQAIARAHRYGQKKKVLVFVLTTRDSVE 1002
Score = 115 (45.5 bits), Expect = 8.1e-33, Sum P(2) = 8.1e-33
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H ILKPFFLRR+K +V N P K +I M P Q+ +Y +L+K +
Sbjct: 760 LHQILKPFFLRRVKSEVLDNFPTKVEVIIPLSMTPVQKGLYKSILSKNL 808
Score = 38 (18.4 bits), Expect = 9.3e-25, Sum P(2) = 9.3e-25
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 119 NKTYDLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEPCENSSNA 162
NK + E + + S + +DTSD ++E EN + A
Sbjct: 150 NKKVNRKEHNELSLSHLSFNDTSDFGSSDLSSSEIESTENDNKA 193
>DICTYBASE|DDB_G0271052 [details] [associations]
symbol:snf2b "SNF2-related protein Snf2a"
species:44689 "Dictyostelium discoideum" [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00951 dictyBase:DDB_G0271052 GO:GO:0005524 GO:GO:0005654
EMBL:AAFI02000005 GO:GO:0003677 GO:GO:0006357 GO:GO:0004386
InterPro:IPR011050 SUPFAM:SSF51126 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF47370
KO:K11647 InterPro:IPR014012 PROSITE:PS51204 RefSeq:XP_646649.1
ProteinModelPortal:Q55C32 EnsemblProtists:DDB0220695 GeneID:8617621
KEGG:ddi:DDB_G0271052 InParanoid:Q55C32 OMA:NINDNPN Uniprot:Q55C32
Length = 3247
Score = 376 (137.4 bits), Expect = 8.7e-33, P = 8.7e-33
Identities = 94/254 (37%), Positives = 146/254 (57%)
Query: 115 KCSLNKTYDLTEIDRMFDSM---IERDDTSDTEVQVEDKI-KVEPCENSS-NAQDVPSAE 169
K +N+ L I R+ + + R + E Q+ DK+ KV C+ S+ A+ +
Sbjct: 1911 KIEMNEEEQLLIIQRLHKVLRPFLLRRLKKEVEAQLPDKVEKVLKCDMSAFQAKMYDLIK 1970
Query: 170 EKNVDEILHHV----NVKMT----NVTMVLRNIISHPYLI-NKPYRIVDGKKEMVCDENI 220
K V ++ N K+ N + LR I +HPYL + Y I D+N+
Sbjct: 1971 TKGVSKLASSGGADGNPKLAKGLKNTYVQLRKICNHPYLFYDDEYNI---------DDNL 2021
Query: 221 VSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEER 280
+ +GK +L++LL KLK H+ L+FS M +++N +E ++Y + RL GS +++ER
Sbjct: 2022 IRYAGKFDLLDRLLPKLKAAGHRVLIFSQMTQLINILEVFFAYKDYKFLRLDGSTKSDER 2081
Query: 281 NDAVQQFNG-STEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQ 339
++ FN ++E+ +F+LSTRAGG GLNL ADT I++DSDWNPQ+D+QA+ R HRIGQ
Sbjct: 2082 GHLLELFNAPNSEYFIFVLSTRAGGLGLNLQTADTVIIFDSDWNPQMDLQAQDRAHRIGQ 2141
Query: 340 TKPVCIYRLVS-HS 352
+ V + RLV+ HS
Sbjct: 2142 KQTVRVLRLVTAHS 2155
>TAIR|locus:2051678 [details] [associations]
symbol:ETL1 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC005936 HOGENOM:HOG000172362
KO:K14439 EMBL:AY059857 EMBL:BT002576 IPI:IPI00520453 PIR:H84432
RefSeq:NP_178318.1 UniGene:At.13358 ProteinModelPortal:Q9ZUL5
SMR:Q9ZUL5 IntAct:Q9ZUL5 PaxDb:Q9ZUL5 PRIDE:Q9ZUL5
EnsemblPlants:AT2G02090.1 GeneID:814740 KEGG:ath:AT2G02090
TAIR:At2g02090 InParanoid:Q9ZUL5 OMA:CAKISAD PhylomeDB:Q9ZUL5
ProtClustDB:CLSN2683669 ArrayExpress:Q9ZUL5 Genevestigator:Q9ZUL5
Uniprot:Q9ZUL5
Length = 763
Score = 323 (118.8 bits), Expect = 9.3e-33, Sum P(2) = 9.3e-33
Identities = 69/154 (44%), Positives = 97/154 (62%)
Query: 208 VDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYN 267
V+ K + D++++ S+ K L +LL +K++ H+ L+FS +L+ +E +
Sbjct: 572 VNDTKGTLSDKHVMLSA-KCRTLAELLPSMKKSGHRVLIFSQWTSMLDILEWTLDVIGVT 630
Query: 268 YYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVD 327
Y RL GS + +R V FN LLSTRAGGQGLNLT ADT I++D D+NPQ+D
Sbjct: 631 YRRLDGSTQVTDRQTIVDTFNNDKSIFACLLSTRAGGQGLNLTGADTVIIHDMDFNPQID 690
Query: 328 IQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTI 361
QAE RCHRIGQTKPV I+RLV+ ST +++ I
Sbjct: 691 RQAEDRCHRIGQTKPVTIFRLVTKSTVDENIYEI 724
Score = 69 (29.3 bits), Expect = 9.3e-33, Sum P(2) = 9.3e-33
Identities = 20/45 (44%), Positives = 23/45 (51%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVL 45
M +IL PF LRRLK DV L PK V M QE Y + +
Sbjct: 428 MKSILGPFILRRLKSDVMQQLVPKIQRVEYVLMERKQEDAYKEAI 472
Score = 46 (21.3 bits), Expect = 2.4e-30, Sum P(2) = 2.4e-30
Identities = 16/68 (23%), Positives = 32/68 (47%)
Query: 111 PKRRKCSLNKTYDLTEID--RMFDSMIERDDTSDTE-VQVEDKIKVEPCENSSNAQDVPS 167
PK+ + + N T + R +M ++SD + V++ED + N +D+
Sbjct: 30 PKKTRAATNPTPSIESFAFRRPSTAMTIESNSSDGDCVEIEDLGDSDSDVKIVNGEDLLL 89
Query: 168 AEEKNVDE 175
+E+ V+E
Sbjct: 90 EDEEEVEE 97
Score = 43 (20.2 bits), Expect = 4.9e-30, Sum P(2) = 4.9e-30
Identities = 19/74 (25%), Positives = 35/74 (47%)
Query: 135 IERDDTSDTEVQVEDKIK--VEPCENSSNAQDVPSAEEKNVDEILHHVNVK-MTNVTMVL 191
I+R + E + ED K +E +S A+ V K+++ + + + ++N
Sbjct: 452 IQRVEYVLMERKQEDAYKEAIEEYRAASQARLV-KLSSKSLNSLAKALPKRQISNYFTQF 510
Query: 192 RNIISHPYLINKPY 205
R I +HP LI + Y
Sbjct: 511 RKIANHPLLIRRIY 524
>ASPGD|ASPL0000061821 [details] [associations]
symbol:AN10043 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:BN001308 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EnsemblFungi:CADANIAT00002546 HOGENOM:HOG000175622 OMA:MEIEESV
Uniprot:C8VUX5
Length = 648
Score = 297 (109.6 bits), Expect = 1.1e-32, Sum P(2) = 1.1e-32
Identities = 83/238 (34%), Positives = 124/238 (52%)
Query: 124 LTEIDR-MFDSMIERDDTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEKNVDEILHHVNV 182
LT +D + IE++ + V + D I VE + + + ++ H+
Sbjct: 244 LTGVDESILLGSIEQEKSQSNVVPMTDSI-VESMTAAWETNKATNTKRRS------HIT- 295
Query: 183 KMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHK-LKQTN 241
TN M LR HPYL+ KE ++IV +S K IVL +++ + + N
Sbjct: 296 --TNTLMELRKCSIHPYLLADAL-----PKEYNIGQHIVDASCKFIVLQKMIRQYVGLEN 348
Query: 242 HKTLVFSTMVKVLNFIEELCVLE----NYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFL 297
K ++FS + L+ E+L +E ++ Y RL GS + RN +V F + VFL
Sbjct: 349 KKVIIFSGFDQTLDLCEDLLEMEKAQFSFKYGRLDGSTSSAWRNLSVFLFQNDPRYMVFL 408
Query: 298 LSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
LSTRAGG+GLNL ++ I D DWNPQV QAE+R HRIGQT+PV I+R+ + T +
Sbjct: 409 LSTRAGGEGLNLVSSSIVIFLDDDWNPQVMRQAESRVHRIGQTQPVQIFRIHAKGTVE 466
Score = 92 (37.4 bits), Expect = 1.1e-32, Sum P(2) = 1.1e-32
Identities = 21/44 (47%), Positives = 25/44 (56%)
Query: 5 LKPFFLRRLKCD--VNLNLPPKKTTVIDCPMVPAQELMYTKVLT 46
LK LRR KCD + L+LPPKK TV P+ Q Y +LT
Sbjct: 202 LKVVMLRRTKCDSQIGLDLPPKKETVFSVPLTELQLGWYRTILT 245
>DICTYBASE|DDB_G0267556 [details] [associations]
symbol:DDB_G0267556 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0267556
GO:GO:0005524 GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:XP_647125.1 ProteinModelPortal:Q55GQ9
EnsemblProtists:DDB0233433 GeneID:8615929 KEGG:ddi:DDB_G0267556
InParanoid:Q55GQ9 OMA:CANVVIF ProtClustDB:CLSZ2501118
Uniprot:Q55GQ9
Length = 1159
Score = 293 (108.2 bits), Expect = 1.4e-32, Sum P(3) = 1.4e-32
Identities = 61/150 (40%), Positives = 90/150 (60%)
Query: 210 GKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNH-KTLVFSTMVKVLNFIEELCVLENYNY 268
G K + DE + +S K + L ++L K N K L+FS M +VL+ +E++ + YN+
Sbjct: 969 GDKYWIPDEQFIETSTKCLKLKEILAKEIGVNKSKVLIFSQMTRVLDILEDVLDIFGYNF 1028
Query: 269 YRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDI 328
RL GS ER + F+ VFLLST +GG G+NLT A+ I YD +NPQVD
Sbjct: 1029 TRLDGSTPVNERQSIIDHFSSKETIPVFLLSTNSGGLGINLTCANVVIFYDLSFNPQVDR 1088
Query: 329 QAEARCHRIGQTKPVCIYRLVSHSTYQVHL 358
QAE R HR+GQ + V IY+L++ +T +++
Sbjct: 1089 QAEDRAHRLGQEREVIIYKLLAENTVDINI 1118
Score = 77 (32.2 bits), Expect = 1.4e-32, Sum P(3) = 1.4e-32
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKT 48
M IL PF LRRLK V+ L PK V C + Q+ Y ++ ++
Sbjct: 754 MKKILSPFILRRLKSTVSKELKPKIEHVEICKLPKFQDETYKNIIERS 801
Score = 58 (25.5 bits), Expect = 9.8e-28, Sum P(2) = 9.8e-28
Identities = 22/90 (24%), Positives = 35/90 (38%)
Query: 83 EESTLSNASSVKAGKREQTIDSNQLVQQPKRR-KCSLNKTYDLTEIDRMFDSMIERDDTS 141
EE V ++ +D + +PK + K D +E + +IE DD
Sbjct: 372 EEEEEEEVLFVNKKRKSNPLDGSSTPTKPKSKPKPKKIIIEDDSETEDEKSQIIEIDDEK 431
Query: 142 DTEVQVEDKIKVEPCENSSNAQDVPSAEEK 171
+ E QVE +VE E + EE+
Sbjct: 432 EEEKQVEQVEQVEQVEQVEQEEGEEEEEEE 461
Score = 50 (22.7 bits), Expect = 1.4e-32, Sum P(3) = 1.4e-32
Identities = 28/122 (22%), Positives = 48/122 (39%)
Query: 80 W-FSEESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERD 138
W E L K +++ I+S+ + KR+ S+ K +I++ D +IE D
Sbjct: 805 WKLRNELLLKKEKEEKEKEKQSLINSSNSSIKKKRKTSSIYKN---NKIEK--DEIIEID 859
Query: 139 DTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEKNVDEILHHVNVKMTNVTMVLRNIISHP 198
D D + + D K N ++ + N + N+ M LR +HP
Sbjct: 860 DGGDDDGLI-DLTKT----NDEKDMELSIKLKSNGSG-----QFVLNNILMQLRKAANHP 909
Query: 199 YL 200
L
Sbjct: 910 LL 911
Score = 49 (22.3 bits), Expect = 8.6e-27, Sum P(2) = 8.6e-27
Identities = 17/65 (26%), Positives = 31/65 (47%)
Query: 112 KRRKCSLNK-TYD-LTEIDRMFDS---MIERDDTSDTEVQVEDKIKVEPCENSSNAQDVP 166
K++K +K T D L ++D++ ++ DT D E + E+++ + SN D
Sbjct: 335 KKKKVENDKITKDILGQVDKLLKKETKKVDDSDTEDDEEEEEEEVLFVNKKRKSNPLDGS 394
Query: 167 SAEEK 171
S K
Sbjct: 395 STPTK 399
Score = 42 (19.8 bits), Expect = 4.6e-26, Sum P(2) = 4.6e-26
Identities = 10/58 (17%), Positives = 24/58 (41%)
Query: 136 ERDDTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEKNVDEILHHVNVKMTNVTMVLRN 193
E ++ ++E +E I C + + + +AE+ ++ T T ++ N
Sbjct: 457 EEEEEIESEPTIERLIYACECFSKRMLEILSNAEDSTINTTTTAATTSTTTTTTIINN 514
>UNIPROTKB|F1Q2U2 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:AAEX03011032
Ensembl:ENSCAFT00000017488 Uniprot:F1Q2U2
Length = 898
Score = 305 (112.4 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
Identities = 72/174 (41%), Positives = 100/174 (57%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTN 241
VK+ NV LR + HPYL V ++ +++ K + L L
Sbjct: 311 VKLQNVLSQLRKCVDHPYLFEG--ETVPFFLTLL----FMTTPLKNLELAALSFLFLARG 364
Query: 242 HKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTR 301
H+ L+FS M ++L+ +++ Y+Y R+ GS+R EER+ A++ F G VFLLSTR
Sbjct: 365 HRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNF-GQQPVFVFLLSTR 423
Query: 302 AGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
AGG G+NLTAADT I DSD+NPQ D+QA AR HRIGQ K V + RL+ T +
Sbjct: 424 AGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVE 477
Score = 88 (36.0 bits), Expect = 1.6e-32, Sum P(2) = 1.6e-32
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTIGENREQVAE 58
+H +L+PF LRR+K +V LP K V+ M Q+ Y +L K + ++A+
Sbjct: 252 LHKLLQPFLLRRVKAEVATELPKKTEVVLYHGMSALQKKYYKAILMKDLDAFESEMAK 309
>UNIPROTKB|F1MJ46 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 GO:GO:0035887
IPI:IPI00693529 OMA:HKPMESM EMBL:DAAA02019479 EMBL:DAAA02019480
EMBL:DAAA02019481 Ensembl:ENSBTAT00000025598 ArrayExpress:F1MJ46
Uniprot:F1MJ46
Length = 1604
Score = 299 (110.3 bits), Expect = 1.8e-32, Sum P(2) = 1.8e-32
Identities = 68/169 (40%), Positives = 98/169 (57%)
Query: 184 MTNVTMVLRNIISHPYL---INKPYRIVDG-KKEMVCDENIVSSSGKMIVLNQLLHKLKQ 239
+ N M LR I +HPY+ I + + G +V ++ +SGK +L+++L KL+
Sbjct: 1027 LMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILPKLRA 1086
Query: 240 TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLS 299
TNHK L+F M ++ +E+ + Y RL G+ + E+R + FN LLS
Sbjct: 1087 TNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRG-MLLTFNEPGSEYFILLS 1145
Query: 300 TRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRL 348
TRAGG GLNL +ADT I++DSDWNP D+QA+ R HRIGQ V + RL
Sbjct: 1146 TRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRL 1194
Score = 101 (40.6 bits), Expect = 1.8e-32, Sum P(2) = 1.8e-32
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTI 49
+H +L+PF LRRLK +V LP K VI C M Q ++Y + K +
Sbjct: 960 LHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGV 1008
>UNIPROTKB|F1N8K9 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0004386 GeneTree:ENSGT00560000076896
EMBL:AADN02065411 EMBL:AADN02065412 EMBL:AADN02065413
IPI:IPI00592819 Ensembl:ENSGALT00000023600 ArrayExpress:F1N8K9
Uniprot:F1N8K9
Length = 559
Score = 358 (131.1 bits), Expect = 1.9e-32, P = 1.9e-32
Identities = 76/170 (44%), Positives = 114/170 (67%)
Query: 189 MVLRNIISHPYLINKPY-RIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVF 247
M L+ +H YLI P K+E + ++++ SSGK+I+L++LL +L++ ++ L+F
Sbjct: 1 MELKKCCNHCYLIKPPDDNEFYNKQEAL--QHLIRSSGKLILLDKLLIRLRERGNRVLIF 58
Query: 248 STMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN--GSTEWGVFLLSTRAGGQ 305
S MV++L+ + E + + RL GSI+ E R A+ FN GS ++ FLLSTRAGG
Sbjct: 59 SQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDF-CFLLSTRAGGL 117
Query: 306 GLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
G+NL +ADT +++DSDWNPQ D+QA+AR HRIGQ K V IYRLV+ + +
Sbjct: 118 GINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVE 167
>ASPGD|ASPL0000041040 [details] [associations]
symbol:AN9077 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0000812 "Swr1
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001306 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 EMBL:AACD01000169 KO:K11681
RefSeq:XP_682346.1 STRING:Q5ARK3 GeneID:2868023 KEGG:ani:AN9077.2
HOGENOM:HOG000186095 OMA:YGNQEER OrthoDB:EOG49S9FK Uniprot:Q5ARK3
Length = 1698
Score = 307 (113.1 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
Identities = 59/134 (44%), Positives = 85/134 (63%)
Query: 225 GKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAV 284
GK+ L++LL LK H+ L+F+ M K+L+ +E+ + + Y RL G+ + E+R
Sbjct: 1373 GKLQRLDKLLRDLKAGGHRALIFTQMTKMLDVLEQFLNIHGHRYLRLDGTTKVEQRQILT 1432
Query: 285 QQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVC 344
+FN F+LS+R+GG G+NLT ADT I YD DWNP +D Q + RCHRIGQT+ V
Sbjct: 1433 DRFNNDNRILAFILSSRSGGLGINLTGADTVIFYDLDWNPAMDKQCQDRCHRIGQTRDVH 1492
Query: 345 IYRLVSHSTYQVHL 358
IYR VS T + ++
Sbjct: 1493 IYRFVSEYTIESNI 1506
Score = 92 (37.4 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
Identities = 18/57 (31%), Positives = 32/57 (56%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTIGENREQVA 57
+H +L+P+ LRRLK DV +P K V+ C + Q +Y +++ + +E +A
Sbjct: 1048 LHTVLRPYILRRLKADVEKQMPGKYEHVVYCRLSKRQRYLYDGFMSRA--QTKETLA 1102
Score = 40 (19.1 bits), Expect = 7.2e-27, Sum P(2) = 7.2e-27
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 123 DLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEP 155
D E M D M + DD +E + +D+ EP
Sbjct: 581 DSDESTDMDDDMGDSDDDGYSEAESDDEDGGEP 613
Score = 39 (18.8 bits), Expect = 9.2e-27, Sum P(2) = 9.2e-27
Identities = 20/81 (24%), Positives = 33/81 (40%)
Query: 124 LTEIDRMFDSMIERDDTSDTEVQVEDKIK-VEPCENSSNAQDVPSA--EEKNVDEILHHV 180
+T++ + I R +D E Q+ K + V C S + + E L
Sbjct: 1045 VTKLHTVLRPYILRRLKADVEKQMPGKYEHVVYCRLSKRQRYLYDGFMSRAQTKETLASG 1104
Query: 181 N-VKMTNVTMVLRNIISHPYL 200
N + + N M LR + +HP L
Sbjct: 1105 NYLSIINCLMQLRKVCNHPDL 1125
>GENEDB_PFALCIPARUM|PF08_0048 [details] [associations]
symbol:PF08_0048 "ATP-dependent helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0016020 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 KO:K01509 EMBL:AL844507
RefSeq:XP_002808863.1 EnsemblProtists:PF08_0048:mRNA GeneID:2655499
KEGG:pfa:PF08_0048 EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 308 (113.5 bits), Expect = 2.7e-32, Sum P(2) = 2.7e-32
Identities = 67/188 (35%), Positives = 110/188 (58%)
Query: 174 DEILHHVNVKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMV--CDENIVSSSGKMIVLN 231
+ +L++ N KM + + ++N + Y K+ ++ +++I SGK+ L
Sbjct: 1722 NNLLNYSNDKMNPIILQIKNA-------TRVYHDAFLKQSIIFPLNKDISLGSGKLCALE 1774
Query: 232 QLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGST 291
+LL K K+ +K L+F+ +K+L+ +E NY++ RL GS + E+R V +FN
Sbjct: 1775 KLLSKCKREGNKCLLFTQFIKMLDILEIFLNHLNYSFIRLDGSTKVEQRQKIVTKFNNDK 1834
Query: 292 EWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSH 351
+F+ STR+G G+NLTAA+ I YD+DWNP +D QA RCHRIGQTK V ++R V
Sbjct: 1835 SIFIFISSTRSGSIGINLTAANVVIFYDTDWNPSIDKQAMDRCHRIGQTKDVHVFRFVCE 1894
Query: 352 STYQVHLF 359
T + +++
Sbjct: 1895 YTVEENIW 1902
Score = 93 (37.8 bits), Expect = 2.7e-32, Sum P(2) = 2.7e-32
Identities = 16/59 (27%), Positives = 31/59 (52%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTIGENREQVAEY 59
+H +++P+ LRRLK +V +P K +I C + Q+++Y + + +N Y
Sbjct: 874 LHTVIRPYILRRLKKNVEKEMPNKYEHIIKCKLTRRQQILYDEFINNKNVQNTLNTGNY 932
Score = 39 (18.8 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 133 SMIERDDTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEK----NVDE 175
+ +E +D ++ E +E E ++S +D + +EK N+DE
Sbjct: 289 NFMENEDDANEENVIETSHNDEKSGDNSIGEDDNNNDEKGGDNNIDE 335
Score = 38 (18.4 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 132 DSMIERDDTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEKN 172
D+ I DD ++ ++ I + N ++D E+ N
Sbjct: 346 DNSIGEDDNNNDHKSGDNNIDEDDNNNDHKSEDNSIGEDDN 386
Score = 38 (18.4 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 132 DSMIERDDTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEKN 172
D+ I+ DD ++ E ++ I + N + D E+ N
Sbjct: 330 DNNIDEDDNNNDEKSGDNSIGEDDNNNDHKSGDNNIDEDDN 370
Score = 38 (18.4 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 132 DSMIERDDTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEKN 172
D+ I DD ++ E ++ I + N + D E+ N
Sbjct: 314 DNSIGEDDNNNDEKGGDNNIDEDDNNNDEKSGDNSIGEDDN 354
>UNIPROTKB|C0H4W3 [details] [associations]
symbol:PF08_0048 "Probable ATP-dependent helicase
PF08_0048" species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005737 "cytoplasm" evidence=NAS] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0016020
"membrane" evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016020
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0016568
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GO:GO:0008026 KO:K01509 EMBL:AL844507 RefSeq:XP_002808863.1
EnsemblProtists:PF08_0048:mRNA GeneID:2655499 KEGG:pfa:PF08_0048
EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 308 (113.5 bits), Expect = 2.7e-32, Sum P(2) = 2.7e-32
Identities = 67/188 (35%), Positives = 110/188 (58%)
Query: 174 DEILHHVNVKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMV--CDENIVSSSGKMIVLN 231
+ +L++ N KM + + ++N + Y K+ ++ +++I SGK+ L
Sbjct: 1722 NNLLNYSNDKMNPIILQIKNA-------TRVYHDAFLKQSIIFPLNKDISLGSGKLCALE 1774
Query: 232 QLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGST 291
+LL K K+ +K L+F+ +K+L+ +E NY++ RL GS + E+R V +FN
Sbjct: 1775 KLLSKCKREGNKCLLFTQFIKMLDILEIFLNHLNYSFIRLDGSTKVEQRQKIVTKFNNDK 1834
Query: 292 EWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSH 351
+F+ STR+G G+NLTAA+ I YD+DWNP +D QA RCHRIGQTK V ++R V
Sbjct: 1835 SIFIFISSTRSGSIGINLTAANVVIFYDTDWNPSIDKQAMDRCHRIGQTKDVHVFRFVCE 1894
Query: 352 STYQVHLF 359
T + +++
Sbjct: 1895 YTVEENIW 1902
Score = 93 (37.8 bits), Expect = 2.7e-32, Sum P(2) = 2.7e-32
Identities = 16/59 (27%), Positives = 31/59 (52%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTKTIGENREQVAEY 59
+H +++P+ LRRLK +V +P K +I C + Q+++Y + + +N Y
Sbjct: 874 LHTVIRPYILRRLKKNVEKEMPNKYEHIIKCKLTRRQQILYDEFINNKNVQNTLNTGNY 932
Score = 39 (18.8 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
Identities = 12/47 (25%), Positives = 24/47 (51%)
Query: 133 SMIERDDTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEK----NVDE 175
+ +E +D ++ E +E E ++S +D + +EK N+DE
Sbjct: 289 NFMENEDDANEENVIETSHNDEKSGDNSIGEDDNNNDEKGGDNNIDE 335
Score = 38 (18.4 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 132 DSMIERDDTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEKN 172
D+ I DD ++ ++ I + N ++D E+ N
Sbjct: 346 DNSIGEDDNNNDHKSGDNNIDEDDNNNDHKSEDNSIGEDDN 386
Score = 38 (18.4 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 10/41 (24%), Positives = 19/41 (46%)
Query: 132 DSMIERDDTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEKN 172
D+ I+ DD ++ E ++ I + N + D E+ N
Sbjct: 330 DNNIDEDDNNNDEKSGDNSIGEDDNNNDHKSGDNNIDEDDN 370
Score = 38 (18.4 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 132 DSMIERDDTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEKN 172
D+ I DD ++ E ++ I + N + D E+ N
Sbjct: 314 DNSIGEDDNNNDEKGGDNNIDEDDNNNDEKSGDNSIGEDDN 354
>TAIR|locus:2150270 [details] [associations]
symbol:CHR23 "chromatin remodeling 23" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007126 "meiosis"
evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
[GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0016571 "histone
methylation" evidence=RCA] [GO:0016579 "protein deubiquitination"
evidence=RCA] [GO:0031048 "chromatin silencing by small RNA"
evidence=RCA] [GO:0033044 "regulation of chromosome organization"
evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K11647
OMA:WAPSISA IPI:IPI00536400 RefSeq:NP_197432.2 UniGene:At.43995
ProteinModelPortal:F4K128 SMR:F4K128 PRIDE:F4K128
EnsemblPlants:AT5G19310.1 GeneID:832051 KEGG:ath:AT5G19310
PhylomeDB:F4K128 Uniprot:F4K128
Length = 1064
Score = 361 (132.1 bits), Expect = 7.1e-32, P = 7.1e-32
Identities = 96/243 (39%), Positives = 139/243 (57%)
Query: 117 SLNKTYDLTEIDRMFDSM---IERDDTSDTEVQVEDKIKVE-PCENSSNAQDVPSAEEKN 172
SL +L I+R+ + + R S+ E + K +V C+ S+ Q + + +
Sbjct: 586 SLTDEEELLIINRLHHVIRPFLLRRKKSEVEKFLPGKTQVILKCDMSA-WQKLYYKQVTD 644
Query: 173 VDEI-LHHVNVK---MTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMI 228
V + LH N K + N+TM LR +HPYL V M IV +SGK
Sbjct: 645 VGRVGLHSGNGKSKSLQNLTMQLRKCCNHPYLF------VGADYNMCKKPEIVRASGKFE 698
Query: 229 VLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFN 288
+L++LL KLK+ H+ L+FS M ++++ +E L +Y Y RL GS + ++R ++QFN
Sbjct: 699 LLDRLLPKLKKAGHRILLFSQMTRLIDLLEIYLSLNDYMYLRLDGSTKTDQRGILLKQFN 758
Query: 289 G-STEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYR 347
+ + +FLLSTRAGG GLNL ADT I++DSDWNPQ+D QAE R HRIGQ K V ++
Sbjct: 759 EPDSPYFMFLLSTRAGGLGLNLQTADTIIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFV 818
Query: 348 LVS 350
LVS
Sbjct: 819 LVS 821
>TAIR|locus:2062999 [details] [associations]
symbol:BRM "AT2G46020" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS;IDA] [GO:0004386
"helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IEA;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0010199 "organ boundary specification between
lateral organs and the meristem" evidence=IGI] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=NAS;TAS] [GO:0040029
"regulation of gene expression, epigenetic" evidence=RCA;IMP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00951
GO:GO:0005829 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0004386
EMBL:AC005397 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 EMBL:AC004665
EMBL:AJ703891 IPI:IPI00529654 IPI:IPI00541940 PIR:G84897
RefSeq:NP_182126.2 RefSeq:NP_973695.1 UniGene:At.48598
ProteinModelPortal:Q6EVK6 SMR:Q6EVK6 IntAct:Q6EVK6 STRING:Q6EVK6
PaxDb:Q6EVK6 PRIDE:Q6EVK6 EnsemblPlants:AT2G46020.2 GeneID:819210
KEGG:ath:AT2G46020 TAIR:At2g46020 HOGENOM:HOG000029719
InParanoid:Q6EVK6 KO:K11647 OMA:EMNAPKE PhylomeDB:Q6EVK6
ProtClustDB:CLSN2681222 ArrayExpress:Q6EVK6 Genevestigator:Q6EVK6
GO:GO:0010199 GO:GO:0040029 Uniprot:Q6EVK6
Length = 2193
Score = 312 (114.9 bits), Expect = 1.3e-31, Sum P(2) = 1.3e-31
Identities = 80/204 (39%), Positives = 116/204 (56%)
Query: 145 VQVEDKIKVEPCENSSNAQDVPSAEEKNVDEILHHVNVKMTNVTMVLRNIISHPYLINKP 204
++ ++V+P + AQ P + K I +N N M LR +HP L+N P
Sbjct: 1243 IKATGTLRVDPDDEKLRAQKNPIYQAK----IYRTLN----NRCMELRKACNHP-LLNYP 1293
Query: 205 YRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLE 264
Y D K+ +V S GK+ +L+++L KL++T H+ L+FSTM K+L+ +EE
Sbjct: 1294 Y-FNDFSKDF-----LVRSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWR 1347
Query: 265 NYNYYRLHGSIRNEERNDAVQQFNG-STEWGVFLLSTRAGGQGLNLTAADTCILYDSDWN 323
Y R+ G+ E+R A+ FN T+ +FLLS RA G+GLNL ADT ++YD D N
Sbjct: 1348 RLVYRRIDGTTSLEDRESAIVDFNDPDTDCFIFLLSIRAAGRGLNLQTADTVVIYDPDPN 1407
Query: 324 PQVDIQAEARCHRIGQTKPV-CIY 346
P+ + QA AR HRIGQT+ V IY
Sbjct: 1408 PKNEEQAVARAHRIGQTREVKVIY 1431
Score = 83 (34.3 bits), Expect = 1.3e-31, Sum P(2) = 1.3e-31
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMY 41
+H IL+PF LRR DV +LP K + V+ C M Q +Y
Sbjct: 1200 LHQILEPFMLRRRVEDVEGSLPAKVSVVLRCRMSAIQSAVY 1240
>TAIR|locus:2062840 [details] [associations]
symbol:SYD "SPLAYED" species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0009908 "flower development"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=IPI] [GO:0010199 "organ
boundary specification between lateral organs and the meristem"
evidence=IGI] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=NAS] [GO:0040029 "regulation of gene expression,
epigenetic" evidence=RCA;IMP] [GO:0009611 "response to wounding"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0000226
"microtubule cytoskeleton organization" evidence=RCA] [GO:0000911
"cytokinesis by cell plate formation" evidence=RCA] [GO:0006306
"DNA methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0007267 "cell-cell signaling" evidence=RCA]
[GO:0009616 "virus induced gene silencing" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0050826 "response to
freezing" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00951 GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 EMBL:CP002685 GO:GO:0009611 GO:GO:0006355
GO:GO:0003677 GO:GO:0003682 GO:GO:0016887 GO:GO:0004386
GO:GO:0009908 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 GO:GO:0010199 GO:GO:0040029 InterPro:IPR014012
PROSITE:PS51204 IPI:IPI00516285 RefSeq:NP_850116.1 UniGene:At.22414
PRIDE:F4IHS2 EnsemblPlants:AT2G28290.1 GeneID:817375
KEGG:ath:AT2G28290 OMA:SDLYAIS Uniprot:F4IHS2
Length = 3574
Score = 365 (133.5 bits), Expect = 1.4e-31, P = 1.4e-31
Identities = 85/206 (41%), Positives = 123/206 (59%)
Query: 144 EVQVEDKI-KVEPCENSSNAQDVPSAEEKNVDEILHHVNVKMTNVTMVLRNIISHPYLIN 202
E ++ +KI ++ CE S+ + + E N+ I + + + N M LRNI +HPYL
Sbjct: 991 ENELPEKIERLIRCEASAYQKLLMKRVEDNLGSIGNAKSRAVHNSVMELRNICNHPYLSQ 1050
Query: 203 KPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCV 262
V+ IV GK+ +L+++L KLK T+H+ L FSTM ++L+ +E+
Sbjct: 1051 LHSEEVNNIIPKHFLPPIVRLCGKLEMLDRMLPKLKATDHRVLFFSTMTRLLDVMEDYLT 1110
Query: 263 LENYNYYRLHGSIRNEERNDAVQQFNGS-TEWGVFLLSTRAGGQGLNLTAADTCILYDSD 321
L+ Y Y RL G +R + FN S + + +FLLS RAGG G+NL AADT IL+D+D
Sbjct: 1111 LKGYKYLRLDGQTSGGDRGALIDGFNKSGSPFFIFLLSIRAGGVGVNLQAADTVILFDTD 1170
Query: 322 WNPQVDIQAEARCHRIGQTKPVCIYR 347
WNPQVD+QA+AR HRIGQ K V + R
Sbjct: 1171 WNPQVDLQAQARAHRIGQKKDVLVLR 1196
>UNIPROTKB|F1RWW3 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070933 "histone H4 deacetylation" evidence=IEA]
[GO:0070932 "histone H3 deacetylation" evidence=IEA] [GO:0051304
"chromosome separation" evidence=IEA] [GO:0043596 "nuclear
replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ
EMBL:CU951443 Ensembl:ENSSSCT00000010066 Uniprot:F1RWW3
Length = 1029
Score = 291 (107.5 bits), Expect = 3.9e-31, Sum P(2) = 3.9e-31
Identities = 63/164 (38%), Positives = 97/164 (59%)
Query: 199 YLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIE 258
+++ K YR ++ + D +++ SGK VL +L +LKQ + ++FS +L+ +E
Sbjct: 834 HVLCKQYRHINNFQ---LDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILE 890
Query: 259 ELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILY 318
L + Y RL G + ER + +FN + VFLLST+AGG G+NLT+A+ IL+
Sbjct: 891 VLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILH 950
Query: 319 DSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTID 362
D D NP D QAE RCHR+GQTK V + +L+S T + + I+
Sbjct: 951 DIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKIN 994
Score = 91 (37.1 bits), Expect = 3.9e-31, Sum P(2) = 3.9e-31
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 4 ILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKV---LTKTIGENREQVAE 58
I+KPF LRR+K +V LPPKK + C M QE +Y + L K+I N E+ E
Sbjct: 717 IIKPFILRRVKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLFNRLKKSIN-NMEKNTE 773
Score = 66 (28.3 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
Identities = 18/67 (26%), Positives = 35/67 (52%)
Query: 150 KIKVEPCENSSNAQDVPSAEEKNVDEILHHV--NVKMTNVTMVLRNIISHPYLINKPYRI 207
K ++E C S + + + + ++++ N +M NV M LR + +HP L+++ Y
Sbjct: 738 KDQIELCAMSEKQEQLYLGLFNRLKKSINNMEKNTEMCNVMMQLRKMANHP-LLHRQYYT 796
Query: 208 VDGKKEM 214
+ KEM
Sbjct: 797 AEKLKEM 803
>POMBASE|SPCP25A2.02c [details] [associations]
symbol:rhp26 "SNF2 family helicase Rhp26" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=ISM] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISM]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 PomBase:SPCP25A2.02c GO:GO:0005829
GO:GO:0005524 GO:GO:0005634 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0003677 GO:GO:0004003 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006283
HOGENOM:HOG000170952 KO:K10841 OrthoDB:EOG44TSGZ EMBL:AB022912
PIR:T50449 RefSeq:NP_588091.1 ProteinModelPortal:Q9UR24
STRING:Q9UR24 EnsemblFungi:SPCP25A2.02c.1 GeneID:2539473
KEGG:spo:SPCP25A2.02c NextBio:20800635 Uniprot:Q9UR24
Length = 973
Score = 294 (108.6 bits), Expect = 4.1e-31, Sum P(2) = 4.1e-31
Identities = 70/173 (40%), Positives = 99/173 (57%)
Query: 190 VLRNIISHPYLINKPYRIVDGKKEMVCDENI--VSSSGKMIVLNQLLHKLKQTNHKTLVF 247
+LR I +HP L+ + Y + KE D N SGK+ V+ LL K+ H+TL+F
Sbjct: 594 ILRKICNHPDLVTREYLL---HKE---DYNYGDPEKSGKLKVIRALLTLWKKQGHRTLLF 647
Query: 248 STMVKVLNFIE-ELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQG 306
S ++L+ +E L L + +Y R+ GS R D V FN + + VFLL+TR GG G
Sbjct: 648 SQTRQMLDILEIGLKDLPDVHYCRMDGSTSIALRQDLVDNFNKNEYFDVFLLTTRVGGLG 707
Query: 307 LNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLF 359
+NLT AD IL+D DWNP D QA R R+GQ K V +YRL++ T + ++
Sbjct: 708 VNLTGADRVILFDPDWNPSTDAQARERAWRLGQKKDVVVYRLMTAGTIEEKIY 760
Score = 87 (35.7 bits), Expect = 4.1e-31, Sum P(2) = 4.1e-31
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVL 45
+ +++ P+ LRR+K DV +LP K V+ C + P Q Y L
Sbjct: 529 LRDLISPYLLRRMKLDVAADLPKKSEQVLFCKLTPLQRKAYQDFL 573
Score = 39 (18.8 bits), Expect = 4.3e-26, Sum P(2) = 4.3e-26
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 156 CENSSNAQDVPSAEEKNVD 174
C N +D SA E N D
Sbjct: 223 CANRKELRDQASASENNKD 241
>UNIPROTKB|B5MDZ7 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR001650 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:AL356378 GO:GO:0003676 GO:GO:0004386
InterPro:IPR002589 PROSITE:PS51154 HGNC:HGNC:1916 ChiTaRS:CHD1L
IPI:IPI00400835 ProteinModelPortal:B5MDZ7 SMR:B5MDZ7 STRING:B5MDZ7
PRIDE:B5MDZ7 Ensembl:ENST00000361293 HOGENOM:HOG000074191
HOVERGEN:HBG104833 ArrayExpress:B5MDZ7 Bgee:B5MDZ7 Uniprot:B5MDZ7
Length = 616
Score = 348 (127.6 bits), Expect = 4.2e-31, P = 4.2e-31
Identities = 77/174 (44%), Positives = 110/174 (63%)
Query: 182 VKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTN 241
VK+ N+ LR + HPYL + V+ + V D ++ +SGK+ +L++LL L
Sbjct: 28 VKLQNILSQLRKCVDHPYLFDG----VEPEPFEVGD-HLTEASGKLHLLDKLLAFLYSGG 82
Query: 242 HKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTR 301
H+ L+FS M ++L+ +++ Y+Y R+ GS+R EER+ A++ F G VFLLSTR
Sbjct: 83 HRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNF-GQQPIFVFLLSTR 141
Query: 302 AGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQ 355
AGG G+NLTAADT I DSD+NPQ D+QA AR HRIGQ K V + RL+ T +
Sbjct: 142 AGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVE 195
>MGI|MGI:1915308 [details] [associations]
symbol:Chd1l "chromodomain helicase DNA binding protein
1-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006200 "ATP
catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=ISO]
[GO:0006974 "response to DNA damage stimulus" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1915308 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0003677 GO:GO:0006281
GO:GO:0006974 GO:GO:0016887 GO:GO:0006338 GO:GO:0004386 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV OMA:TCQTIAL ChiTaRS:CHD1L
EMBL:AK014473 EMBL:AK165656 EMBL:BC052385 EMBL:BC057567
EMBL:BC062966 IPI:IPI00466859 IPI:IPI00890897 RefSeq:NP_080815.1
UniGene:Mm.41447 ProteinModelPortal:Q9CXF7 SMR:Q9CXF7
DIP:DIP-58953N STRING:Q9CXF7 PhosphoSite:Q9CXF7 PaxDb:Q9CXF7
PRIDE:Q9CXF7 Ensembl:ENSMUST00000029730 GeneID:68058 KEGG:mmu:68058
UCSC:uc008qow.1 UCSC:uc008qox.1 GeneTree:ENSGT00670000098110
InParanoid:Q9CXF7 NextBio:326336 Bgee:Q9CXF7 Genevestigator:Q9CXF7
Uniprot:Q9CXF7
Length = 900
Score = 352 (129.0 bits), Expect = 4.7e-31, P = 4.7e-31
Identities = 93/262 (35%), Positives = 141/262 (53%)
Query: 98 REQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEPCE 157
REQ D Q Q ++ S + E+ R+ + R + ++ K +V
Sbjct: 221 REQVEDFVQRYQDIEKESKSAS------ELHRLLQPFLLRRVKAQVATELPKKTEVVVYH 274
Query: 158 NSSNAQD--VPSAEEKNVDEILHHV--NVKMTNVTMVLRNIISHPYLINKPYRIVDGKKE 213
S Q + K++D + VK+ N+ LR + HPYL + V+ +
Sbjct: 275 GMSALQKKYYKAILMKDLDAFENETAKKVKLQNILTQLRKCVDHPYLFDG----VEPEPF 330
Query: 214 MVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHG 273
V E+++ +SGK+ +L++LL L H+ L+FS M +L+ +++ Y+Y R+ G
Sbjct: 331 EV-GEHLIEASGKLHLLDRLLAFLYSGGHRVLLFSQMTHMLDILQDYMDYRGYSYERVDG 389
Query: 274 SIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEAR 333
S+R EER+ A++ F G+ VFLLSTRAGG G+NLTAADT I DSD+NPQ D+QA AR
Sbjct: 390 SVRGEERHLAIKNF-GNQPIFVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAAR 448
Query: 334 CHRIGQTKPVCIYRLVSHSTYQ 355
HRIGQ K V + RL+ T +
Sbjct: 449 AHRIGQNKSVKVIRLIGRDTVE 470
>UNIPROTKB|Q9H4L7 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9606 "Homo sapiens" [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0009117 "nucleotide metabolic process" evidence=NAS]
[GO:0003676 "nucleic acid binding" evidence=NAS] [GO:0016363
"nuclear matrix" evidence=NAS] [GO:0051260 "protein
homooligomerization" evidence=NAS] [GO:0000018 "regulation of DNA
recombination" evidence=IEP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0016568 "chromatin
modification" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0000729
"DNA double-strand break processing" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0035861
"site of double-strand break" evidence=IDA] [GO:0043596 "nuclear
replication fork" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=NAS] [GO:0051304 "chromosome separation" evidence=IMP]
[GO:0070932 "histone H3 deacetylation" evidence=IMP] [GO:0070933
"histone H4 deacetylation" evidence=IMP] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR003892 InterPro:IPR009060
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0045893 GO:GO:0003677
GO:GO:0009117 GO:GO:0051260 GO:GO:0043596 GO:GO:0004386
GO:GO:0016363 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000729 GO:GO:0000018
HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439 GO:GO:0051304
OMA:KNQRGIQ EMBL:AY008271 EMBL:AB032948 EMBL:AK023990 EMBL:AK027490
EMBL:AK301668 EMBL:AC096746 EMBL:BC017953 EMBL:BC045534
EMBL:AL359929 EMBL:AL512768 IPI:IPI00008422 IPI:IPI00220119
RefSeq:NP_001121901.1 RefSeq:NP_001121902.1 RefSeq:NP_001241878.1
RefSeq:NP_064544.2 UniGene:Hs.410406 ProteinModelPortal:Q9H4L7
SMR:Q9H4L7 STRING:Q9H4L7 PhosphoSite:Q9H4L7 DMDM:306526240
PaxDb:Q9H4L7 PRIDE:Q9H4L7 DNASU:56916 Ensembl:ENST00000354268
Ensembl:ENST00000359052 Ensembl:ENST00000457823
Ensembl:ENST00000509418 GeneID:56916 KEGG:hsa:56916 UCSC:uc003htb.4
UCSC:uc003htc.4 CTD:56916 GeneCards:GC04P095128 H-InvDB:HIX0004380
HGNC:HGNC:18398 HPA:HPA016737 MIM:136000 MIM:612761
neXtProt:NX_Q9H4L7 Orphanet:289465 PharmGKB:PA134954731
HOVERGEN:HBG055804 ChiTaRS:SMARCAD1 GenomeRNAi:56916 NextBio:62407
ArrayExpress:Q9H4L7 Bgee:Q9H4L7 CleanEx:HS_SMARCAD1
Genevestigator:Q9H4L7 GermOnline:ENSG00000163104 Uniprot:Q9H4L7
Length = 1026
Score = 291 (107.5 bits), Expect = 4.9e-31, Sum P(2) = 4.9e-31
Identities = 63/164 (38%), Positives = 97/164 (59%)
Query: 199 YLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIE 258
+++ K YR ++ + D +++ SGK VL +L +LKQ + ++FS +L+ +E
Sbjct: 831 HVLCKQYRHINNFQ---LDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILE 887
Query: 259 ELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILY 318
L + Y RL G + ER + +FN + VFLLST+AGG G+NLT+A+ IL+
Sbjct: 888 VLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILH 947
Query: 319 DSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTID 362
D D NP D QAE RCHR+GQTK V + +L+S T + + I+
Sbjct: 948 DIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKIN 991
Score = 90 (36.7 bits), Expect = 4.9e-31, Sum P(2) = 4.9e-31
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 4 ILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKV---LTKTIGENREQVAE 58
I+KPF LRR+K +V LPPKK + C M QE +Y + L K+I N E+ E
Sbjct: 714 IIKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSIN-NLEKNTE 770
Score = 67 (28.6 bits), Expect = 3.1e-30, Sum P(3) = 3.1e-30
Identities = 18/67 (26%), Positives = 35/67 (52%)
Query: 150 KIKVEPCENSSNAQDVPSAEEKNVDEILHHV--NVKMTNVTMVLRNIISHPYLINKPYRI 207
K ++E C S + + + + ++++ N +M NV M LR + +HP L+++ Y
Sbjct: 735 KDRIELCAMSEKQEQLYLGLFNRLKKSINNLEKNTEMCNVMMQLRKMANHP-LLHRQYYT 793
Query: 208 VDGKKEM 214
+ KEM
Sbjct: 794 AEKLKEM 800
Score = 41 (19.5 bits), Expect = 6.6e-26, Sum P(2) = 6.6e-26
Identities = 24/100 (24%), Positives = 45/100 (45%)
Query: 84 ESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLN---KTYDLTEIDRMFDSM-IERDD 139
E +S A++ + E+T DS+ RK S++ + ID DS + +
Sbjct: 46 EGEVSRANTPDSDITEKTEDSSVPETPDNERKASISYFKNQRGIQYIDLSSDSEDVVSPN 105
Query: 140 TSDTEVQV---EDKIKV--EPCENSSNAQDVPSAEEKNVD 174
S+T + +D + + EP E+ + Q +P+ +N D
Sbjct: 106 CSNTVQEKTFNKDTVIIVSEPSEDEES-QGLPTMARRNDD 144
Score = 37 (18.1 bits), Expect = 3.1e-30, Sum P(3) = 3.1e-30
Identities = 10/54 (18%), Positives = 27/54 (50%)
Query: 83 EESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIE 136
+E T + + + + + +S L RR +++ DL+E++ + D+ ++
Sbjct: 111 QEKTFNKDTVIIVSEPSEDEESQGLPTMA-RRNDDISELEDLSELEDLKDAKLQ 163
>UNIPROTKB|E2RG62 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070933 "histone H4 deacetylation"
evidence=IEA] [GO:0070932 "histone H3 deacetylation" evidence=IEA]
[GO:0051304 "chromosome separation" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 EMBL:AAEX03016768
EMBL:AAEX03016769 Ensembl:ENSCAFT00000015951 Uniprot:E2RG62
Length = 1026
Score = 291 (107.5 bits), Expect = 4.9e-31, Sum P(2) = 4.9e-31
Identities = 63/164 (38%), Positives = 97/164 (59%)
Query: 199 YLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIE 258
+++ K YR ++ + D +++ SGK VL +L +LKQ + ++FS +L+ +E
Sbjct: 831 HVLCKQYRHINNFQ---LDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILE 887
Query: 259 ELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILY 318
L + Y RL G + ER + +FN + VFLLST+AGG G+NLT+A+ IL+
Sbjct: 888 VLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILH 947
Query: 319 DSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTID 362
D D NP D QAE RCHR+GQTK V + +L+S T + + I+
Sbjct: 948 DIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKIN 991
Score = 90 (36.7 bits), Expect = 4.9e-31, Sum P(2) = 4.9e-31
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 4 ILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKV---LTKTIGENREQVAE 58
I+KPF LRR+K +V LPPKK + C M QE +Y + L K+I N E+ E
Sbjct: 714 IIKPFILRRVKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLFNRLKKSIN-NIEKSTE 770
Score = 63 (27.2 bits), Expect = 3.3e-28, Sum P(2) = 3.3e-28
Identities = 17/67 (25%), Positives = 35/67 (52%)
Query: 150 KIKVEPCENSSNAQDVPSAEEKNVDEILHHV--NVKMTNVTMVLRNIISHPYLINKPYRI 207
K ++E C S + + + + ++++ + +M NV M LR + +HP L+++ Y
Sbjct: 735 KDQIELCAMSEKQEQLYLGLFNRLKKSINNIEKSTEMCNVMMQLRKMANHP-LLHRQYYT 793
Query: 208 VDGKKEM 214
+ KEM
Sbjct: 794 AEKLKEM 800
Score = 53 (23.7 bits), Expect = 3.7e-27, Sum P(2) = 3.7e-27
Identities = 30/123 (24%), Positives = 57/123 (46%)
Query: 83 EESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLN---KTYDLTEIDRMFDS--MIER 137
E + +S A + + E+T DS+ RK S++ + ID DS ++
Sbjct: 43 ENAEVSRAGTPDSDITEKTEDSSVPETTENERKASISYFKNQRGIQYIDLSSDSEDIVSP 102
Query: 138 DDTSDTEVQVEDKIKV----EPCENSSNAQDVPSAEEKNVDEI--LHHVNVKMTNVTMVL 191
+ +S + + +K V EP E+ + Q +P+ +N D+I L V + T V++++
Sbjct: 103 NCSSTVQEKKFNKDTVIIVSEPSEDEES-QGLPTMSGRNNDDISELEDVYMFFTFVSVMI 161
Query: 192 RNI 194
I
Sbjct: 162 TTI 164
>UNIPROTKB|J9NX47 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
EMBL:AAEX03016768 EMBL:AAEX03016769 Ensembl:ENSCAFT00000044961
Uniprot:J9NX47
Length = 1026
Score = 291 (107.5 bits), Expect = 4.9e-31, Sum P(2) = 4.9e-31
Identities = 63/164 (38%), Positives = 97/164 (59%)
Query: 199 YLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIE 258
+++ K YR ++ + D +++ SGK VL +L +LKQ + ++FS +L+ +E
Sbjct: 831 HVLCKQYRHINNFQ---LDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILE 887
Query: 259 ELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILY 318
L + Y RL G + ER + +FN + VFLLST+AGG G+NLT+A+ IL+
Sbjct: 888 VLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILH 947
Query: 319 DSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTID 362
D D NP D QAE RCHR+GQTK V + +L+S T + + I+
Sbjct: 948 DIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKIN 991
Score = 90 (36.7 bits), Expect = 4.9e-31, Sum P(2) = 4.9e-31
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 4 ILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKV---LTKTIGENREQVAE 58
I+KPF LRR+K +V LPPKK + C M QE +Y + L K+I N E+ E
Sbjct: 714 IIKPFILRRVKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLFNRLKKSIN-NIEKSTE 770
Score = 63 (27.2 bits), Expect = 3.3e-28, Sum P(2) = 3.3e-28
Identities = 17/67 (25%), Positives = 35/67 (52%)
Query: 150 KIKVEPCENSSNAQDVPSAEEKNVDEILHHV--NVKMTNVTMVLRNIISHPYLINKPYRI 207
K ++E C S + + + + ++++ + +M NV M LR + +HP L+++ Y
Sbjct: 735 KDQIELCAMSEKQEQLYLGLFNRLKKSINNIEKSTEMCNVMMQLRKMANHP-LLHRQYYT 793
Query: 208 VDGKKEM 214
+ KEM
Sbjct: 794 AEKLKEM 800
Score = 47 (21.6 bits), Expect = 1.6e-26, Sum P(2) = 1.6e-26
Identities = 25/103 (24%), Positives = 47/103 (45%)
Query: 83 EESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLN---KTYDLTEIDRMFDS--MIER 137
E + +S A + + E+T DS+ RK S++ + ID DS ++
Sbjct: 41 ENAEVSRAGTPDSDITEKTEDSSVPETTENERKASISYFKNQRGIQYIDLSSDSEDIVSP 100
Query: 138 DDTSDTEVQVEDKIKV----EPCENSSNAQDVPSAEEKNVDEI 176
+ +S + + +K V EP E+ + Q +P+ +N D+I
Sbjct: 101 NCSSTVQEKKFNKDTVIIVSEPSEDEES-QGLPTMSGRNNDDI 142
>UNIPROTKB|J9PA79 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
OMA:KNQRGIQ EMBL:AAEX03016768 EMBL:AAEX03016769
Ensembl:ENSCAFT00000043847 Uniprot:J9PA79
Length = 1026
Score = 291 (107.5 bits), Expect = 4.9e-31, Sum P(2) = 4.9e-31
Identities = 63/164 (38%), Positives = 97/164 (59%)
Query: 199 YLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIE 258
+++ K YR ++ + D +++ SGK VL +L +LKQ + ++FS +L+ +E
Sbjct: 831 HVLCKQYRHINNFQ---LDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILE 887
Query: 259 ELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILY 318
L + Y RL G + ER + +FN + VFLLST+AGG G+NLT+A+ IL+
Sbjct: 888 VLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILH 947
Query: 319 DSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTID 362
D D NP D QAE RCHR+GQTK V + +L+S T + + I+
Sbjct: 948 DIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIEESMLKIN 991
Score = 90 (36.7 bits), Expect = 4.9e-31, Sum P(2) = 4.9e-31
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 4 ILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKV---LTKTIGENREQVAE 58
I+KPF LRR+K +V LPPKK + C M QE +Y + L K+I N E+ E
Sbjct: 714 IIKPFILRRVKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLFNRLKKSIN-NIEKSTE 770
Score = 63 (27.2 bits), Expect = 3.3e-28, Sum P(2) = 3.3e-28
Identities = 17/67 (25%), Positives = 35/67 (52%)
Query: 150 KIKVEPCENSSNAQDVPSAEEKNVDEILHHV--NVKMTNVTMVLRNIISHPYLINKPYRI 207
K ++E C S + + + + ++++ + +M NV M LR + +HP L+++ Y
Sbjct: 735 KDQIELCAMSEKQEQLYLGLFNRLKKSINNIEKSTEMCNVMMQLRKMANHP-LLHRQYYT 793
Query: 208 VDGKKEM 214
+ KEM
Sbjct: 794 AEKLKEM 800
Score = 47 (21.6 bits), Expect = 1.6e-26, Sum P(2) = 1.6e-26
Identities = 25/103 (24%), Positives = 47/103 (45%)
Query: 83 EESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLN---KTYDLTEIDRMFDS--MIER 137
E + +S A + + E+T DS+ RK S++ + ID DS ++
Sbjct: 43 ENAEVSRAGTPDSDITEKTEDSSVPETTENERKASISYFKNQRGIQYIDLSSDSEDIVSP 102
Query: 138 DDTSDTEVQVEDKIKV----EPCENSSNAQDVPSAEEKNVDEI 176
+ +S + + +K V EP E+ + Q +P+ +N D+I
Sbjct: 103 NCSSTVQEKKFNKDTVIIVSEPSEDEES-QGLPTMSGRNNDDI 144
>GENEDB_PFALCIPARUM|PFB0730w [details] [associations]
symbol:PFB0730w "DNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0003678 "DNA helicase
activity" evidence=ISS] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0016514 "SWI/SNF complex" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0006338 GO:GO:0016514 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 KO:K11647 EMBL:AE001362 OMA:NENMNMS
PIR:F71607 RefSeq:XP_001349665.1 ProteinModelPortal:O96239
EnsemblProtists:PFB0730w:mRNA GeneID:812747 KEGG:pfa:PFB0730w
EuPathDB:PlasmoDB:PF3D7_0216000 Uniprot:O96239
Length = 1997
Score = 205 (77.2 bits), Expect = 5.4e-31, Sum P(3) = 5.4e-31
Identities = 46/128 (35%), Positives = 71/128 (55%)
Query: 169 EEKNVDEILHH--VNVKM-TNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSG 225
+ K ++ H+ + K+ N+ M LR I++HPYL Y I DENI+ SG
Sbjct: 1143 QTKGFKQVNHNGSITTKIFQNIVMQLRKIVNHPYLFLYDYNI---------DENIIKCSG 1193
Query: 226 KMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQ 285
K VL+++L KL + HK L+FS M K++N + + Y Y+RL G+I +ER +
Sbjct: 1194 KFEVLDRMLPKLLKFKHKVLIFSQMTKLMNILCDYLEFRGYKYHRLDGNIGLQERKKIID 1253
Query: 286 QFNGSTEW 293
QFN + E+
Sbjct: 1254 QFNNNVEY 1261
Score = 183 (69.5 bits), Expect = 5.4e-31, Sum P(3) = 5.4e-31
Identities = 40/90 (44%), Positives = 56/90 (62%)
Query: 275 IRNEERNDAV----QQFNGSTEWG-VFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQ 329
++ EE ND + NG + +F+LSTR+G GLNL ADT I++DSD+NP DIQ
Sbjct: 1380 LKKEEINDFQIMDDKNVNGGNQDAMIFILSTRSGSLGLNLQTADTVIIFDSDFNPHQDIQ 1439
Query: 330 AEARCHRIGQTKPVCIYRLVSHSTYQVHLF 359
A RCHRIGQ V ++R ++ S + +F
Sbjct: 1440 AMCRCHRIGQKNVVKVFRFITLSGVEELVF 1469
Score = 83 (34.3 bits), Expect = 5.4e-31, Sum P(3) = 5.4e-31
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H++L PF LRR+K DV +LP K I + Q+++Y ++ TK
Sbjct: 1099 LHSVLLPFMLRRVKKDVLKSLPKKYEYNIHIELSLYQKILYKQIQTK 1145
Score = 61 (26.5 bits), Expect = 9.7e-12, Sum P(2) = 9.7e-12
Identities = 28/117 (23%), Positives = 57/117 (48%)
Query: 112 KRRKCSLNKTYDLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEK 171
K+ K + N+ D E + ++ E+DD + E + E K E + N ++ + EK
Sbjct: 179 KKEKNNKNEKDDEMENKKEKNNKNEKDD--EMENKKEKNNKNEKDDEMENKKEKNNKNEK 236
Query: 172 NVDEILHHVNVKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMI 228
+ DEI +++ M N + NI+ + I K + +K+ V ++NI+ + ++
Sbjct: 237 D-DEIKENMDKVMEN-QLNQSNILYNKDRIRKNRNNLKDEKD-VSNKNILDDNKDIV 290
Score = 56 (24.8 bits), Expect = 3.4e-28, Sum P(3) = 3.4e-28
Identities = 21/107 (19%), Positives = 46/107 (42%)
Query: 83 EESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSD 142
E++ + K+E+ + N+ + + +K NK EI D ++E
Sbjct: 197 EKNNKNEKDDEMENKKEKN-NKNEKDDEMENKKEKNNKNEKDDEIKENMDKVMENQLNQS 255
Query: 143 TEVQVEDKIKVEPCENSSNAQDVPSAEEKNV-DEILHHVNVKMTNVT 188
+ +D+I+ +N +N +D KN+ D+ V K+ +++
Sbjct: 256 NILYNKDRIR----KNRNNLKDEKDVSNKNILDDNKDIVEFKLQDIS 298
Score = 41 (19.5 bits), Expect = 1.2e-26, Sum P(3) = 1.2e-26
Identities = 18/84 (21%), Positives = 42/84 (50%)
Query: 97 KREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDTEVQV------EDK 150
KR++ D + K+ K + N+ D E + ++ E+DD + + + +D+
Sbjct: 117 KRKKKKDKENK-SKSKKEKNNKNEKDDEMENKKEKNNKNEKDDEMENKKEKNNKNEKDDE 175
Query: 151 IKVEPCENSSNAQD--VPSAEEKN 172
++ + +N+ N +D + + +EKN
Sbjct: 176 MENKKEKNNKNEKDDEMENKKEKN 199
Score = 39 (18.8 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 30/173 (17%), Positives = 68/173 (39%)
Query: 94 KAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDTEVQVEDKIKV 153
K G R++ I++ +L + N D D D+ D+ +D + I
Sbjct: 551 KKGNRKKKINTKKLYHHDNYNNNNNNNNNDNNN-DNNNDN--NNDNNNDNNNDNNNNINC 607
Query: 154 EPCE--NSSNAQDVPSAEEKNV---DEILHHVNVKMTNVTMVLRNIISHPYLINKPYRIV 208
E N + + +++ K++ +E+ H N + + V + + Y+ + +
Sbjct: 608 IYGEHHNVKHKKRKSTSKSKHIFRSNEVSIHFNDDIKKIEHVAKKELQE-YI-----KQI 661
Query: 209 DGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELC 261
K ++ N +SS + ++++ K N+ TL+ + + LC
Sbjct: 662 HNKSKI---HNNISSLKQYMLISNWKELTKHNNYMTLLSEEKKRNSKILANLC 711
>UNIPROTKB|O96239 [details] [associations]
symbol:PFB0730w "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003678 "DNA helicase
activity" evidence=ISS] [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0032508 "DNA duplex unwinding" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0006338
GO:GO:0016514 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0003678 KO:K11647 EMBL:AE001362 OMA:NENMNMS PIR:F71607
RefSeq:XP_001349665.1 ProteinModelPortal:O96239
EnsemblProtists:PFB0730w:mRNA GeneID:812747 KEGG:pfa:PFB0730w
EuPathDB:PlasmoDB:PF3D7_0216000 Uniprot:O96239
Length = 1997
Score = 205 (77.2 bits), Expect = 5.4e-31, Sum P(3) = 5.4e-31
Identities = 46/128 (35%), Positives = 71/128 (55%)
Query: 169 EEKNVDEILHH--VNVKM-TNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSG 225
+ K ++ H+ + K+ N+ M LR I++HPYL Y I DENI+ SG
Sbjct: 1143 QTKGFKQVNHNGSITTKIFQNIVMQLRKIVNHPYLFLYDYNI---------DENIIKCSG 1193
Query: 226 KMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQ 285
K VL+++L KL + HK L+FS M K++N + + Y Y+RL G+I +ER +
Sbjct: 1194 KFEVLDRMLPKLLKFKHKVLIFSQMTKLMNILCDYLEFRGYKYHRLDGNIGLQERKKIID 1253
Query: 286 QFNGSTEW 293
QFN + E+
Sbjct: 1254 QFNNNVEY 1261
Score = 183 (69.5 bits), Expect = 5.4e-31, Sum P(3) = 5.4e-31
Identities = 40/90 (44%), Positives = 56/90 (62%)
Query: 275 IRNEERNDAV----QQFNGSTEWG-VFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQ 329
++ EE ND + NG + +F+LSTR+G GLNL ADT I++DSD+NP DIQ
Sbjct: 1380 LKKEEINDFQIMDDKNVNGGNQDAMIFILSTRSGSLGLNLQTADTVIIFDSDFNPHQDIQ 1439
Query: 330 AEARCHRIGQTKPVCIYRLVSHSTYQVHLF 359
A RCHRIGQ V ++R ++ S + +F
Sbjct: 1440 AMCRCHRIGQKNVVKVFRFITLSGVEELVF 1469
Score = 83 (34.3 bits), Expect = 5.4e-31, Sum P(3) = 5.4e-31
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 1 MHNILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK 47
+H++L PF LRR+K DV +LP K I + Q+++Y ++ TK
Sbjct: 1099 LHSVLLPFMLRRVKKDVLKSLPKKYEYNIHIELSLYQKILYKQIQTK 1145
Score = 61 (26.5 bits), Expect = 9.7e-12, Sum P(2) = 9.7e-12
Identities = 28/117 (23%), Positives = 57/117 (48%)
Query: 112 KRRKCSLNKTYDLTEIDRMFDSMIERDDTSDTEVQVEDKIKVEPCENSSNAQDVPSAEEK 171
K+ K + N+ D E + ++ E+DD + E + E K E + N ++ + EK
Sbjct: 179 KKEKNNKNEKDDEMENKKEKNNKNEKDD--EMENKKEKNNKNEKDDEMENKKEKNNKNEK 236
Query: 172 NVDEILHHVNVKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMI 228
+ DEI +++ M N + NI+ + I K + +K+ V ++NI+ + ++
Sbjct: 237 D-DEIKENMDKVMEN-QLNQSNILYNKDRIRKNRNNLKDEKD-VSNKNILDDNKDIV 290
Score = 56 (24.8 bits), Expect = 3.4e-28, Sum P(3) = 3.4e-28
Identities = 21/107 (19%), Positives = 46/107 (42%)
Query: 83 EESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSD 142
E++ + K+E+ + N+ + + +K NK EI D ++E
Sbjct: 197 EKNNKNEKDDEMENKKEKN-NKNEKDDEMENKKEKNNKNEKDDEIKENMDKVMENQLNQS 255
Query: 143 TEVQVEDKIKVEPCENSSNAQDVPSAEEKNV-DEILHHVNVKMTNVT 188
+ +D+I+ +N +N +D KN+ D+ V K+ +++
Sbjct: 256 NILYNKDRIR----KNRNNLKDEKDVSNKNILDDNKDIVEFKLQDIS 298
Score = 41 (19.5 bits), Expect = 1.2e-26, Sum P(3) = 1.2e-26
Identities = 18/84 (21%), Positives = 42/84 (50%)
Query: 97 KREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDTEVQV------EDK 150
KR++ D + K+ K + N+ D E + ++ E+DD + + + +D+
Sbjct: 117 KRKKKKDKENK-SKSKKEKNNKNEKDDEMENKKEKNNKNEKDDEMENKKEKNNKNEKDDE 175
Query: 151 IKVEPCENSSNAQD--VPSAEEKN 172
++ + +N+ N +D + + +EKN
Sbjct: 176 MENKKEKNNKNEKDDEMENKKEKN 199
Score = 39 (18.8 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 30/173 (17%), Positives = 68/173 (39%)
Query: 94 KAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDTEVQVEDKIKV 153
K G R++ I++ +L + N D D D+ D+ +D + I
Sbjct: 551 KKGNRKKKINTKKLYHHDNYNNNNNNNNNDNNN-DNNNDN--NNDNNNDNNNDNNNNINC 607
Query: 154 EPCE--NSSNAQDVPSAEEKNV---DEILHHVNVKMTNVTMVLRNIISHPYLINKPYRIV 208
E N + + +++ K++ +E+ H N + + V + + Y+ + +
Sbjct: 608 IYGEHHNVKHKKRKSTSKSKHIFRSNEVSIHFNDDIKKIEHVAKKELQE-YI-----KQI 661
Query: 209 DGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELC 261
K ++ N +SS + ++++ K N+ TL+ + + LC
Sbjct: 662 HNKSKI---HNNISSLKQYMLISNWKELTKHNNYMTLLSEEKKRNSKILANLC 711
>UNIPROTKB|E1B7X9 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9913 "Bos taurus" [GO:0035861 "site of
double-strand break" evidence=ISS] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=ISS] [GO:0000729 "DNA double-strand
break processing" evidence=ISS] [GO:0070933 "histone H4
deacetylation" evidence=ISS] [GO:0070932 "histone H3 deacetylation"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0051304 "chromosome separation"
evidence=ISS] [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000792 GO:GO:0070932 GO:GO:0070933 GO:GO:0000729
GO:GO:0000018 GO:GO:0035861 GeneTree:ENSGT00630000089890
GO:GO:0051304 EMBL:DAAA02016925 EMBL:DAAA02016926 IPI:IPI00826348
UniGene:Bt.77636 Ensembl:ENSBTAT00000047936 OMA:KNQRGIQ
Uniprot:E1B7X9
Length = 1028
Score = 287 (106.1 bits), Expect = 6.4e-31, Sum P(2) = 6.4e-31
Identities = 62/164 (37%), Positives = 96/164 (58%)
Query: 199 YLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIE 258
+++ K YR ++ + D +++ SGK VL +L +LKQ + ++FS +L+ +E
Sbjct: 833 HVLCKQYRHINNFQ---LDMDLILDSGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILE 889
Query: 259 ELCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILY 318
L + Y RL G + ER + +FN + VFLLST+AGG G+NLT+A+ IL+
Sbjct: 890 VLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILH 949
Query: 319 DSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHLFTID 362
D D NP D QAE RCHR+GQTK V + +L+ T + + I+
Sbjct: 950 DIDCNPYNDKQAEDRCHRVGQTKEVLVIKLIGQGTIEESMLKIN 993
Score = 93 (37.8 bits), Expect = 6.4e-31, Sum P(2) = 6.4e-31
Identities = 25/58 (43%), Positives = 33/58 (56%)
Query: 4 ILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKV---LTKTIGENREQVAE 58
I+KPF LRR+K +V LPPKK + C M QE +Y + L K+I N E+ E
Sbjct: 716 IIKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYMNLFNRLKKSIN-NMEKNTE 772
Score = 66 (28.3 bits), Expect = 4.3e-28, Sum P(2) = 4.3e-28
Identities = 18/67 (26%), Positives = 35/67 (52%)
Query: 150 KIKVEPCENSSNAQDVPSAEEKNVDEILHHV--NVKMTNVTMVLRNIISHPYLINKPYRI 207
K ++E C S + + + + ++++ N +M NV M LR + +HP L+++ Y
Sbjct: 737 KDRIELCAMSEKQEQLYMNLFNRLKKSINNMEKNTEMCNVMMQLRKMANHP-LLHRQYYT 795
Query: 208 VDGKKEM 214
+ KEM
Sbjct: 796 AEKLKEM 802
>POMBASE|SPCC1620.14c [details] [associations]
symbol:snf22 "ATP-dependent DNA helicase Snf22"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEP] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0000991 "core RNA polymerase II binding transcription factor
activity" evidence=ISO] [GO:0003677 "DNA binding" evidence=IC]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=IC] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005819 "spindle" evidence=IDA] [GO:0006338
"chromatin remodeling" evidence=IGI] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:0010972 "negative
regulation of G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEP] [GO:1900389 "regulation of glucose import
by regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:1900400 "regulation of iron ion import by
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR014978 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00384
SMART:SM00490 SMART:SM00951 PomBase:SPCC1620.14c GO:GO:0005524
GO:GO:0005819 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003677
GO:GO:0045944 GO:GO:0000122 GO:GO:0000790 GO:GO:0016514
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0007131
InterPro:IPR014012 PROSITE:PS51204 GO:GO:0010972
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R EMBL:AB162437
PIR:T41628 RefSeq:NP_588472.2 ProteinModelPortal:O94421
DIP:DIP-48377N STRING:O94421 PRIDE:O94421
EnsemblFungi:SPCC1620.14c.1 GeneID:2538881 KEGG:spo:SPCC1620.14c
NextBio:20800061 GO:GO:1900389 GO:GO:1900400 Uniprot:O94421
Length = 1680
Score = 354 (129.7 bits), Expect = 8.2e-31, P = 8.2e-31
Identities = 88/256 (34%), Positives = 142/256 (55%)
Query: 115 KCSLNKTYDLTEIDRMFDSM---IERDDTSDTEVQVEDKI-KVEPCENSSNAQDVPSAEE 170
K LN+ L I R+ + + R D E ++ DK+ KV C S + +
Sbjct: 1070 KIGLNEEEALLIIKRLHKVLRPFLFRRLKKDVEKELPDKVEKVIKCPLSGLQLKLYQQMK 1129
Query: 171 KN----VDEILHHVNVK-MTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSSG 225
K+ VD +K + N M L+ I +HP++ R +D V + + ++G
Sbjct: 1130 KHGMLFVDGEKGKTGIKGLQNTVMQLKKICNHPFIFEDVERAIDPSGTNV--DLLWRAAG 1187
Query: 226 KMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQ 285
K +L+++L KL T HKTL+F M +++ +E+ +N+ Y RL GS ++++R +
Sbjct: 1188 KFELLDRILPKLFLTGHKTLMFFQMTQIMTIMEDYLRSKNWKYLRLDGSTKSDDRCSLLA 1247
Query: 286 QFNG-STEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVC 344
QFN ++ +F+LSTRAGG GLNL ADT I++D+DWNP D+QA+ R HRIGQTK V
Sbjct: 1248 QFNDPKSDVYIFMLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQTKEVR 1307
Query: 345 IYRLVSHSTYQVHLFT 360
I RL++ + + ++ +
Sbjct: 1308 ILRLITEKSIEENILS 1323
>ZFIN|ZDB-GENE-050522-499 [details] [associations]
symbol:smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISS] [GO:0000729 "DNA double-strand break
processing" evidence=ISS] [GO:0035861 "site of double-strand break"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-499 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 SUPFAM:SSF46934 GO:GO:0000729 HOGENOM:HOG000172362
GO:GO:0035861 GeneTree:ENSGT00630000089890 OMA:KEERYMA
HOVERGEN:HBG055804 EMBL:AL807792 IPI:IPI00492619 UniGene:Dr.3950
ProteinModelPortal:B0R061 Ensembl:ENSDART00000091409
ArrayExpress:B0R061 Bgee:B0R061 Uniprot:B0R061
Length = 972
Score = 276 (102.2 bits), Expect = 9.1e-31, Sum P(2) = 9.1e-31
Identities = 58/139 (41%), Positives = 88/139 (63%)
Query: 217 DENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIR 276
++ ++ SGK +L + L KLK+ + ++FS +L+ +E L ++ Y RL GS
Sbjct: 793 EKALILDSGKFALLTKTLAKLKEKGDRVVLFSQFTMMLDIVEILLKHLDHQYVRLDGSTP 852
Query: 277 NEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHR 336
ER + ++N + E VFLLSTRAGGQG+NL +A+T IL+D D NP D QAE RCHR
Sbjct: 853 MAERIGLIDKYNTNPEIFVFLLSTRAGGQGINLASANTVILHDIDCNPFNDKQAEDRCHR 912
Query: 337 IGQTKPVCIYRLVSHSTYQ 355
+GQT+ V + +L+S + +
Sbjct: 913 MGQTRTVQVIKLISKDSIE 931
Score = 102 (41.0 bits), Expect = 9.1e-31, Sum P(2) = 9.1e-31
Identities = 26/55 (47%), Positives = 32/55 (58%)
Query: 4 ILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYT---KVLTKTI-GENRE 54
I+KPF LRR+K +V LPPK + CPM AQ +Y K L KT G+ RE
Sbjct: 663 IMKPFILRRVKSEVLKELPPKMEKIEMCPMSDAQHKLYDILFKRLKKTPNGDKRE 717
Score = 49 (22.3 bits), Expect = 6.3e-28, Sum P(3) = 6.3e-28
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 152 KVEPCENSSNAQDVPSAEEKNVDEILHHVNVKMTNVTMVLRNIISHPYLINKPYRIVD 209
K+E C S + K + + + ++ NV M LR + +HP L+++ Y D
Sbjct: 686 KIEMCPMSDAQHKLYDILFKRLKKTPNGDKRELCNVMMQLRKMANHP-LLHRQYYTSD 742
Score = 47 (21.6 bits), Expect = 6.3e-28, Sum P(3) = 6.3e-28
Identities = 20/75 (26%), Positives = 35/75 (46%)
Query: 83 EESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNK---TYDLTEIDRMFDSMIERDD 139
E S++S + K+ + T N ++ + + LN + D EID DSM + D
Sbjct: 268 EVSSMSALKTQKSALSKST-SKNSSFKRKRGDEMPLNDVSASEDEDEIDSDVDSMSDDQD 326
Query: 140 TSDTEV---QVEDKI 151
+ D + ++DKI
Sbjct: 327 SEDEDSISGTLQDKI 341
>POMBASE|SPAC1250.01 [details] [associations]
symbol:snf21 "ATP-dependent DNA helicase Snf21"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0000991 "core RNA polymerase II binding
transcription factor activity" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IC] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0016586 "RSC complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 PomBase:SPAC1250.01 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006338 GO:GO:0000790
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172362
KO:K11786 EMBL:AB162438 PIR:T37561 RefSeq:NP_594861.1
ProteinModelPortal:Q9UTN6 DIP:DIP-48388N STRING:Q9UTN6
EnsemblFungi:SPAC1250.01.1 GeneID:2542638 KEGG:spo:SPAC1250.01
OMA:WAPSISA OrthoDB:EOG4D565R NextBio:20803687 Uniprot:Q9UTN6
Length = 1199
Score = 349 (127.9 bits), Expect = 1.7e-30, P = 1.7e-30
Identities = 82/225 (36%), Positives = 130/225 (57%)
Query: 142 DTEVQVEDKI-KVEPCENSSNAQDVPSAEEKN----VDEILH-HVNVK-MTNVTMVLRNI 194
D E ++ DK+ KV C+ S Q + +K+ V++ +K + N M L+ I
Sbjct: 648 DVEAELPDKVEKVIRCQMSGLQQKLYYQMKKHGMLYVEDAKRGKTGIKGLQNTVMQLKKI 707
Query: 195 ISHPYLINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVL 254
+HP++ R +D + + SGK +L+++L KL ++ H+ L+F M +++
Sbjct: 708 CNHPFVFEDVERSIDPTGFNY--DMLWRVSGKFELLDRILPKLFRSGHRILMFFQMTQIM 765
Query: 255 NFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNGST-EWGVFLLSTRAGGQGLNLTAAD 313
N +E+ + Y RL GS + ++R+ + FN T E +FLLSTRAGG GLNL AD
Sbjct: 766 NIMEDYLHYRQWRYLRLDGSTKADDRSKLLGVFNDPTAEVNLFLLSTRAGGLGLNLQTAD 825
Query: 314 TCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHSTYQVHL 358
T I++DSDWNP D+QA+ R HRIGQTK V IYRL++ + + ++
Sbjct: 826 TVIIFDSDWNPHQDLQAQDRAHRIGQTKEVRIYRLITEKSVEENI 870
>ZFIN|ZDB-GENE-091113-61 [details] [associations]
symbol:si:dkey-76p7.6 "si:dkey-76p7.6" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-091113-61 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000729 GO:GO:0035861 GeneTree:ENSGT00630000089890
EMBL:BX927385 IPI:IPI00901431 Ensembl:ENSDART00000113101
Bgee:E7F1C4 Uniprot:E7F1C4
Length = 954
Score = 283 (104.7 bits), Expect = 2.8e-30, Sum P(2) = 2.8e-30
Identities = 59/143 (41%), Positives = 87/143 (60%)
Query: 213 EMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLH 272
E + +++ SGK+ +L QLL+ LK+ + ++FS +L+ +E + Y RL
Sbjct: 770 EYQLNTDVLLDSGKLSLLTQLLNSLKEKGDRVVLFSQFTMMLDILEVFLRHHKHRYNRLD 829
Query: 273 GSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEA 332
GS +R + QFN + VFLLSTRAGG G+NLT+A+ IL+D D NP D QAE
Sbjct: 830 GSTPMSDRIGLIDQFNTDQDIFVFLLSTRAGGLGINLTSANVVILHDIDCNPYNDKQAEG 889
Query: 333 RCHRIGQTKPVCIYRLVSHSTYQ 355
RCHR+GQTK V + +L+S + +
Sbjct: 890 RCHRVGQTKTVKVIKLISKDSIE 912
Score = 90 (36.7 bits), Expect = 2.8e-30, Sum P(2) = 2.8e-30
Identities = 23/55 (41%), Positives = 32/55 (58%)
Query: 4 ILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKVLTK----TIGENRE 54
I+KPF LRR+K +V LP K+ V C M Q+ +Y+ +L K + GE RE
Sbjct: 644 IMKPFILRRVKSEVLKQLPAKEEQVEFCAMSERQQELYSALLHKLKHSSNGEKRE 698
Score = 61 (26.5 bits), Expect = 3.0e-27, Sum P(2) = 3.0e-27
Identities = 18/63 (28%), Positives = 32/63 (50%)
Query: 152 KVEPCENSSNAQDVPSAEEKNVDEILHHVNVKMTNVTMVLRNIISHPYLINKPYRIVDGK 211
+VE C S Q++ SA + + ++TNV M LR + +HP L+++ + +
Sbjct: 667 QVEFCAMSERQQELYSALLHKLKHSSNGEKRELTNVMMQLRKMSNHP-LLHRQFYTTEKL 725
Query: 212 KEM 214
K M
Sbjct: 726 KAM 728
>MGI|MGI:95453 [details] [associations]
symbol:Smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1" species:10090 "Mus musculus" [GO:0000018 "regulation
of DNA recombination" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000729 "DNA double-strand break
processing" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016568
"chromatin modification" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035861 "site of double-strand break"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=ISO] [GO:0043596 "nuclear replication fork" evidence=ISO]
[GO:0051304 "chromosome separation" evidence=ISO] [GO:0070932
"histone H3 deacetylation" evidence=ISO] [GO:0070933 "histone H4
deacetylation" evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 MGI:MGI:95453 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0043596 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 GO:GO:0000792 GO:GO:0070932 GO:GO:0070933
GO:GO:0000729 GO:GO:0000018 HOGENOM:HOG000172362 GO:GO:0035861
KO:K14439 GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ
CTD:56916 HOVERGEN:HBG055804 EMBL:X69942 EMBL:AK122454
EMBL:BC042442 EMBL:AK134442 EMBL:AK147884 IPI:IPI00223926
IPI:IPI00556837 PIR:A56559 RefSeq:NP_001240321.1 RefSeq:NP_031984.1
UniGene:Mm.99113 ProteinModelPortal:Q04692 SMR:Q04692 STRING:Q04692
PhosphoSite:Q04692 PaxDb:Q04692 PRIDE:Q04692
Ensembl:ENSMUST00000031984 GeneID:13990 KEGG:mmu:13990
UCSC:uc009ced.1 UCSC:uc012emw.1 InParanoid:Q04692 OrthoDB:EOG4RV2QW
NextBio:284868 Bgee:Q04692 Genevestigator:Q04692
GermOnline:ENSMUSG00000029920 Uniprot:Q04692
Length = 1021
Score = 284 (105.0 bits), Expect = 3.4e-30, Sum P(2) = 3.4e-30
Identities = 59/146 (40%), Positives = 87/146 (59%)
Query: 217 DENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIR 276
D +++ SGK L +L +LKQ + ++FS +L+ +E L + Y RL G +
Sbjct: 841 DMDLILDSGKFRALGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQ 900
Query: 277 NEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHR 336
ER + +FN + VFLLST+AGG G+NLT+A+ IL+D D NP D QAE RCHR
Sbjct: 901 ISERIHLIDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHR 960
Query: 337 IGQTKPVCIYRLVSHSTYQVHLFTID 362
+GQTK V + +L+S T + + I+
Sbjct: 961 VGQTKEVLVIKLISQGTIEESMLKIN 986
Score = 89 (36.4 bits), Expect = 3.4e-30, Sum P(2) = 3.4e-30
Identities = 25/58 (43%), Positives = 34/58 (58%)
Query: 4 ILKPFFLRRLKCDVNLNLPPKKTTVIDCPMVPAQELMYTKV---LTKTIGENREQVAE 58
I+KPF LRR+K +V LPPKK + C M QE +Y+ + L K+I N E+ E
Sbjct: 709 IIKPFILRRVKEEVLKLLPPKKDRIELCAMSEKQEQLYSGLFNRLKKSIN-NLEKNTE 765
Score = 71 (30.1 bits), Expect = 2.6e-28, Sum P(2) = 2.6e-28
Identities = 19/67 (28%), Positives = 36/67 (53%)
Query: 150 KIKVEPCENSSNAQDVPSAEEKNVDEILHHV--NVKMTNVTMVLRNIISHPYLINKPYRI 207
K ++E C S + + S + + ++++ N +M NV M LR + +HP L+++ Y
Sbjct: 730 KDRIELCAMSEKQEQLYSGLFNRLKKSINNLEKNTEMCNVMMQLRKMANHP-LLHRQYYT 788
Query: 208 VDGKKEM 214
+ KEM
Sbjct: 789 PEKLKEM 795
Score = 52 (23.4 bits), Expect = 2.6e-26, Sum P(2) = 2.6e-26
Identities = 24/94 (25%), Positives = 40/94 (42%)
Query: 88 SNASSVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTS-DTEVQ 146
S A++ + E+T DS+ RK SL+ + I D + +D S +
Sbjct: 50 SRANTPDSDVTEKTEDSSVPEPPDNERKASLSCFQNQRAIQEYIDLSSDTEDVSPNCSST 109
Query: 147 VEDK--------IKVEPCENSSNAQDVPSAEEKN 172
V++K I EP E+ + D+PS +N
Sbjct: 110 VQEKKFSKDTVIIVSEPSEDEES-HDLPSVTRRN 142
Score = 44 (20.5 bits), Expect = 1.8e-25, Sum P(2) = 1.8e-25
Identities = 18/78 (23%), Positives = 33/78 (42%)
Query: 87 LSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTSDTEV- 145
L N + KR + ++ + QP + + S L+ + + R +T D++V
Sbjct: 3 LFNLDRFRFEKRSKIEEAPEAAPQPSQARPS--SPISLSAEEENAEGEGSRANTPDSDVT 60
Query: 146 -QVEDKIKVEPCENSSNA 162
+ ED EP +N A
Sbjct: 61 EKTEDSSVPEPPDNERKA 78
Score = 39 (18.8 bits), Expect = 5.9e-25, Sum P(2) = 5.9e-25
Identities = 20/116 (17%), Positives = 46/116 (39%)
Query: 82 SEESTLSNASSVKAGKREQTIDSNQLVQQPKRRKCSLNKTYDLTEIDRMFDSMIERDDTS 141
SEE +++ SVK + ++ +SN+ + + + L + FD R+
Sbjct: 213 SEEDDVNDDQSVKQPRGDRGEESNESAEASSNWEKQESIVLKLQKEFPNFDKQELREVLK 272
Query: 142 DTEVQVEDKIK-VEPCENSSNAQDVPSAEEKNVDEILHHVNVKMTNVTMVLRNIIS 196
+ E + ++ ++ + Q +E N E+ + N + ++ IS
Sbjct: 273 EHEWMYTEALESLKVFAEDQDVQCASQSEVTNGKEVARNQNYSKNATKIKMKQKIS 328
WARNING: HSPs involving 283 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.133 0.393 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 404 376 0.00088 117 3 11 22 0.39 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 533
No. of states in DFA: 616 (65 KB)
Total size of DFA: 252 KB (2136 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:02
No. of threads or processors used: 24
Search cpu time: 33.50u 0.11s 33.61t Elapsed: 00:00:28
Total cpu time: 33.56u 0.11s 33.67t Elapsed: 00:00:30
Start: Thu Aug 15 13:05:06 2013 End: Thu Aug 15 13:05:36 2013
WARNINGS ISSUED: 2