RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1089
(404 letters)
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 346
Score = 96.2 bits (238), Expect = 9e-23
Identities = 61/185 (32%), Positives = 95/185 (51%), Gaps = 11/185 (5%)
Query: 180 VNVKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCD---------ENIVSSSGKMIVL 230
++V + L+ + +HP LI + + + D SGKM+VL
Sbjct: 47 ISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVL 106
Query: 231 NQLLHKLKQ-TNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG 289
+ +L + T+ K ++ S + L+ E+LC Y Y RL G++ ++R V++FN
Sbjct: 107 DYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNN 166
Query: 290 STEWGV-FLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQTKPVCIYRL 348
+ F+LS++AGG GLNL A+ +++D DWNP D QA AR R GQ K IYRL
Sbjct: 167 PSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRL 226
Query: 349 VSHST 353
+S T
Sbjct: 227 LSTGT 231
Score = 32.6 bits (73), Expect = 0.075
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 21 LPPKKTTVIDCPMVPAQELMYTKVLTKT 48
LP K V+ C + P Q+ +Y L +
Sbjct: 9 LPVKIEQVVCCNLTPLQKELYKLFLKQA 36
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 71.1 bits (173), Expect = 2e-14
Identities = 30/147 (20%), Positives = 57/147 (38%), Gaps = 17/147 (11%)
Query: 218 ENIVSSSGKMIVLNQLLHKL--KQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGS- 274
+ I KM L +++ + ++ N K +VF+ + I V + R G
Sbjct: 136 KEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQA 195
Query: 275 -------IRNEERNDAVQQF-NGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQV 326
+ E+ + +F G L++T G +GL++ D + Y+ +
Sbjct: 196 SKENDRGLSQREQKLILDEFARGEFN---VLVATSVGEEGLDVPEVDLVVFYEPVPSAIR 252
Query: 327 DIQAEARCHRIGQTKPVCIYRLVSHST 353
IQ R R G+ P + L++ T
Sbjct: 253 SIQ---RRGRTGRHMPGRVIILMAKGT 276
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 244
Score = 67.8 bits (164), Expect = 1e-13
Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 1/155 (0%)
Query: 200 LINKPYRIVDGKKEMVCDENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEE 259
+ K +IVD + E V SGKMI +++ + K +F+ V + I
Sbjct: 44 TLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRN 103
Query: 260 -LCVLENYNYYRLHGSIRNEERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILY 318
+ N L+G + +ER+D + +F + +LS +AGG G+NLT+A+ I +
Sbjct: 104 IIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHF 163
Query: 319 DSDWNPQVDIQAEARCHRIGQTKPVCIYRLVSHST 353
D WNP V+ QA R +RIGQT+ V +++L+S T
Sbjct: 164 DRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 198
Score = 25.8 bits (55), Expect = 9.9
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 24 KKTTVIDCPMVPAQELMYTKVLTKTIGE 51
K T + C + P Q MY +
Sbjct: 1 KIETNVYCNLTPEQAAMYKAEVENLFNN 28
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 63.4 bits (153), Expect = 2e-12
Identities = 23/135 (17%), Positives = 56/135 (41%), Gaps = 10/135 (7%)
Query: 220 IVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEE 279
+S K+ L ++L + + K ++F+ +++ I + + + EE
Sbjct: 74 AFNSKNKIRKLREILERHR--KDKIIIFTRHNELVYRISK-----VFLIPAITHRTSREE 126
Query: 280 RNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQ 339
R + ++ F + S++ +G+++ A+ ++ + + IQ R R +
Sbjct: 127 REEILEGFRTGRFRAIV--SSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSK 184
Query: 340 TK-PVCIYRLVSHST 353
K +Y L+S T
Sbjct: 185 GKKEAVLYELISRGT 199
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 39.9 bits (92), Expect = 1e-04
Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 2/111 (1%)
Query: 230 LNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQFNG 289
L LK LVF + + + + +HG + +R ++ F
Sbjct: 17 FEALCRLLKNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQ 76
Query: 290 STEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQT 340
+ +T +G+++ + I Y NP+ + R R G+
Sbjct: 77 KKIRILI--ATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKK 125
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 35.9 bits (82), Expect = 0.006
Identities = 14/125 (11%), Positives = 35/125 (28%), Gaps = 13/125 (10%)
Query: 218 ENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRN 277
E++ + + L+ +L KL ++++ + I E L+N + I
Sbjct: 5 EDVAVNDESISTLSSILEKL---GTGGIIYARTGEEAEEIYES--LKN----KFRIGIVT 55
Query: 278 EERNDAVQQFNGSTEWGVFLLSTRAGGQGLNLTAADTC---ILYDSDWNPQVDIQAEARC 334
+ ++F + + G L + + I+
Sbjct: 56 ATKKGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRV-TIEDIDSL 114
Query: 335 HRIGQ 339
Sbjct: 115 SPQMV 119
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 230
Score = 33.5 bits (75), Expect = 0.035
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 1 MHNILKPFFLRRLKCD--VNLNLP 22
+ I+ PF LRR K D + +LP
Sbjct: 207 LKAIISPFILRRTKYDKAIINDLP 230
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 33.4 bits (76), Expect = 0.037
Identities = 18/134 (13%), Positives = 39/134 (29%), Gaps = 17/134 (12%)
Query: 218 ENIVSSSGKMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRN 277
E +S++G++ + + + L+F K + + V N + +
Sbjct: 13 EVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDV 72
Query: 278 EER----------NDAVQQF-NGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQV 326
DA+ G + + + +L T +
Sbjct: 73 SVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTT------L 126
Query: 327 DIQAEARCHRIGQT 340
A +R R G+T
Sbjct: 127 PQDAVSRTQRRGRT 140
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 28.4 bits (62), Expect = 1.1
Identities = 24/114 (21%), Positives = 46/114 (40%), Gaps = 4/114 (3%)
Query: 226 KMIVLNQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQ 285
K L L L + ++F + ++++ E N+ +HG + +ER ++
Sbjct: 21 KFDTLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMK 78
Query: 286 QFNGSTEWGVFLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIGQ 339
+F + ST +GL++ I YD N ++ I R R G+
Sbjct: 79 EFRSGASRVLI--STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGR 130
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 28.0 bits (61), Expect = 2.4
Identities = 17/138 (12%), Positives = 31/138 (22%), Gaps = 22/138 (15%)
Query: 231 NQLLHKLKQTNHKTLVFSTMVKVLNFIEELCVLENYNYYRLHGSIRNEERNDAVQQF--- 287
N + KT+ F +K N I +L + E
Sbjct: 168 NSGHEWVTDFKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEYIKTRTNDWDF 227
Query: 288 ---NGSTEWGV------FLLSTRAGGQGLNLTAADTCILYDSDWNPQVDIQAEARCHRIG 338
+E G + R + + IL + + R G
Sbjct: 228 VVTTDISEMGANFKAERVIDPRRCMKPVILTDGEERVILAGPMP-----VTHSSAAQRRG 282
Query: 339 QT----KPVCIYRLVSHS 352
+ K + +
Sbjct: 283 RVGRNPKNEN-DQYIYMG 299
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 298
Score = 26.6 bits (57), Expect = 6.1
Identities = 3/12 (25%), Positives = 7/12 (58%)
Query: 1 MHNILKPFFLRR 12
+ +I+ +RR
Sbjct: 287 LISIVNRCLIRR 298
>d1o22a_ d.238.1.1 (A:) Hypothetical protein TM0875 {Thermotoga
maritima [TaxId: 2336]}
Length = 149
Score = 25.8 bits (56), Expect = 7.2
Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 12/44 (27%)
Query: 256 FIEELCVLENYNYYRLH------------GSIRNEERNDAVQQF 287
F+EE+ L++Y ++ S++ + RN+ V++F
Sbjct: 84 FVEEIDYLDSYGDMKILSEKNWYKIYVPYSSVKKKNRNELVEEF 127
>d1urfa_ a.2.6.1 (A:) Protein kinase c-like 1, pkn/prk1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 81
Score = 24.4 bits (53), Expect = 8.5
Identities = 11/77 (14%), Positives = 27/77 (35%), Gaps = 5/77 (6%)
Query: 165 VPSAEEKNVDEILHHVNVKMTNVTMVLRNIISHPYLINKPYRIVDGKKEMVCDENIVSSS 224
+P+ V + + +++ V N+I D K + + + S
Sbjct: 2 IPATNLSRVAGLEKQLAIEL-KVKQGAENMIQ----TYSNGSTKDRKLLLTAQQMLQDSK 56
Query: 225 GKMIVLNQLLHKLKQTN 241
K+ ++ L + Q +
Sbjct: 57 TKIDIIRMQLRRALQAD 73
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.130 0.379
Gapped
Lambda K H
0.267 0.0447 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,413,492
Number of extensions: 61437
Number of successful extensions: 186
Number of sequences better than 10.0: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 20
Length of query: 404
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 317
Effective length of database: 1,213,086
Effective search space: 384548262
Effective search space used: 384548262
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.3 bits)