BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10890
(499 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N2Z|B Chain B, The Structure Of Human Prolylcarboxypeptidase At 2.80
Angstroms Resolution
Length = 446
Score = 423 bits (1087), Expect = e-118, Method: Compositional matrix adjust.
Identities = 205/446 (45%), Positives = 282/446 (63%), Gaps = 17/446 (3%)
Query: 1 VDQFTYTSNQTFQLKYLYNDKYWDKKNGPIFFYCGNEGAVEVFTENTGFLWESAKRFKAL 60
VD F + + +TF +YL DKYW K G I FY GNEG + F NTGF+W+ A+ KA+
Sbjct: 12 VDHFGFNTVKTFNQRYLVADKYWKKNGGSILFYTGNEGDIIWFCNNTGFMWDVAEELKAM 71
Query: 61 IVFSEHRYYGDSLPFGNKSFDSVSTRGYLSSEQALEDFVDVIEYIQSSAEGEKDRALEGD 120
+VF+EHRYYG+SLPFG+ SF +L+SEQAL DF ++I++++ + G +++
Sbjct: 72 LVFAEHRYYGESLPFGDNSFKDSRHLNFLTSEQALADFAELIKHLKRTIPGAENQ----- 126
Query: 121 YNLGRRYPVIAFGGSYGGMLASWLRMKYPHIVQGALAASAPIWAFPNMAPCNFYSKTVTE 180
PVIA GGSYGGMLA+W RMKYPH+V GALAASAPIW F ++ PC + K VT
Sbjct: 127 -------PVIAIGGSYGGMLAAWFRMKYPHMVVGALAASAPIWQFEDLVPCGVFMKIVTT 179
Query: 181 VFKNASQNCHDSIKASWKLIDDVTKDNLGKQWLTDNWKLCTPLETTDDVQKFKGWIGDIY 240
F+ + +C +SI SW I+ ++ G QWLT LC+PL T+ D+Q K WI + +
Sbjct: 180 DFRKSGPHCSESIHRSWDAINRLSNTGSGLQWLTGALHLCSPL-TSQDIQHLKDWISETW 238
Query: 241 STLAMVNYPYPNSFLRPVPGYPIKKFCAALDSSTQSNVLL--KLFEASQVYLNYTQDAQC 298
LAMV+YPY ++FL+P+P +PIK C L + S+ LL +F+A VY NY+ +C
Sbjct: 239 VNLAMVDYPYASNFLQPLPAWPIKVVCQYLKNPNVSDSLLLQNIFQALNVYYNYSGQVKC 298
Query: 299 FKWDSGSSIDELGLTGWYFQTCTEMVMPFCSKD-NDMFEPYPWSFDGFRAECEKTFQVSP 357
S ++ LG GW +Q CTE+VMPFC+ +DMFEP+ W+ +C + + V P
Sbjct: 299 LN-ISETATSSLGTLGWSYQACTEVVMPFCTNGVDDMFEPHSWNLKELSDDCFQQWGVRP 357
Query: 358 NPNIAEKLYGGLRIEAASNIIFSNGLLDPWSHAGVLHNISSSVVAVVIPEGAHHLDLRAA 417
P+ +YGG I + +NI+FSNG LDPWS GV +I+ ++VAV I EGAHHLDLR
Sbjct: 358 RPSWITTMYGGKNISSHTNIVFSNGELDPWSGGGVTKDITDTLVAVTISEGAHHLDLRTK 417
Query: 418 NKDDPESVIQARKYYERTFRKWINEF 443
N DP SV+ AR R + WI +F
Sbjct: 418 NALDPMSVLLARSLEVRHMKNWIRDF 443
>pdb|3JYH|A Chain A, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|B Chain B, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|C Chain C, Human Dipeptidyl Peptidase Dpp7
pdb|3JYH|D Chain D, Human Dipeptidyl Peptidase Dpp7
pdb|3N0T|A Chain A, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|B Chain B, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|C Chain C, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
pdb|3N0T|D Chain D, Human Dipeptidil Peptidase Dpp7 Complexed With Inhibitor
Gsk237826a
Length = 469
Score = 300 bits (768), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 182/464 (39%), Positives = 258/464 (55%), Gaps = 38/464 (8%)
Query: 1 VDQFTYT--SNQTFQLKYLYNDKYWDKKNGPIFFYCGNEGAVEVFTENTGFLWESAKRFK 58
+D F + N+TF ++L +D++W + GPIFFY GNEG V F N+ F+ E A
Sbjct: 17 LDHFNFERFGNKTFPQRFLVSDRFWVRGEGPIFFYTGNEGDVWAFANNSAFVAELAAERG 76
Query: 59 ALIVFSEHRYYGDSLPFGNKSFDSVSTRGY---LSSEQALEDFVDVIEYIQSSAEGEKDR 115
AL+VF+EHRYYG SLPFG +S + RG+ L+ EQAL DF +++ R
Sbjct: 77 ALLVFAEHRYYGKSLPFGAQS----TQRGHTELLTVEQALADFAELL------------R 120
Query: 116 ALEGDYNLGRRYPVIAFGGSYGGMLASWLRMKYPHIVQGALAASAPIWAFPNMAPCNFYS 175
AL D + P IAFGGSYGGML+++LRMKYPH+V GALAASAP+ A + N +
Sbjct: 121 ALRRDLG-AQDAPAIAFGGSYGGMLSAYLRMKYPHLVAGALAASAPVLAVAGLGDSNQFF 179
Query: 176 KTVTEVFKNASQNCHDSIKASWKLIDDVTKDNLGKQWLTDNWKL--CTPLETTDDVQKFK 233
+ VT F+ S C ++ +++ I D+ L + T W+ C PL D+ +
Sbjct: 180 RDVTADFEGQSPKCTQGVREAFRQIKDLF---LQGAYDTVRWEFGTCQPLSDEKDLTQLF 236
Query: 234 GWIGDIYSTLAMVNYPYPNSFLRPVPGYPIKKFCAALDSSTQSNVLLKLFEASQVYLNYT 293
+ + ++ LAM++YPYP FL P+P P+K C L S Q L+ A VY N +
Sbjct: 237 MFARNAFTVLAMMDYPYPTDFLGPLPANPVKVGCDRLLSEAQRITGLRAL-AGLVY-NAS 294
Query: 294 QDAQCFKWDS--GSSIDELGL-TG-----WYFQTCTEMVMPFCSKD-NDMFEPYPWSFDG 344
C+ S D G TG W +Q CTE+ + F S + DMF P++ +
Sbjct: 295 GSEHCYDIYRLYHSCADPTGCGTGPDARAWDYQACTEINLTFASNNVTDMFPDLPFTDEL 354
Query: 345 FRAECEKTFQVSPNPNIAEKLYGGLRIEAASNIIFSNGLLDPWSHAGVLHNISSSVVAVV 404
+ C T+ V P P+ + G + AASNIIFSNG LDPW+ G+ N+S+SV+AV
Sbjct: 355 RQRYCLDTWGVWPRPDWLLTSFWGGDLRAASNIIFSNGNLDPWAGGGIRRNLSASVIAVT 414
Query: 405 IPEGAHHLDLRAANKDDPESVIQARKYYERTFRKWINEFEISEQ 448
I GAHHLDLRA++ +DP SV++ARK +W+ +Q
Sbjct: 415 IQGGAHHLDLRASHPEDPASVVEARKLEATIIGEWVKAARREQQ 458
>pdb|4EBB|A Chain A, Structure Of Dpp2
pdb|4EBB|B Chain B, Structure Of Dpp2
Length = 472
Score = 289 bits (739), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 178/464 (38%), Positives = 253/464 (54%), Gaps = 38/464 (8%)
Query: 1 VDQFTYT--SNQTFQLKYLYNDKYWDKKNGPIFFYCGNEGAVEVFTENTGFLWESAKRFK 58
+D F + N+TF ++L +D++W + GPIFFY GNEG V F N+ F+ E A
Sbjct: 14 LDHFNFERFGNKTFPQRFLVSDRFWVRGEGPIFFYTGNEGDVWAFANNSAFVAELAAERG 73
Query: 59 ALIVFSEHRYYGDSLPFGNKSFDSVSTRGY---LSSEQALEDFVDVIEYIQSSAEGEKDR 115
AL+VF+EHRYYG SLPFG +S + RG+ L+ EQAL DF +++ R
Sbjct: 74 ALLVFAEHRYYGKSLPFGAQS----TQRGHTELLTVEQALADFAELL------------R 117
Query: 116 ALEGDYNLGRRYPVIAFGGSYGGMLASWLRMKYPHIVQGALAASAPIWAFPNMAPCNFYS 175
AL D + P IAFGGSYGG L+++LR KYPH+V GALAASAP+ A + N +
Sbjct: 118 ALRRDLG-AQDAPAIAFGGSYGGXLSAYLRXKYPHLVAGALAASAPVLAVAGLGDSNQFF 176
Query: 176 KTVTEVFKNASQNCHDSIKASWKLIDDVTKDNLGKQWLTDNWKL--CTPLETTDDVQKFK 233
+ VT F+ S C ++ +++ I D+ L + T W+ C PL D+ +
Sbjct: 177 RDVTADFEGQSPKCTQGVREAFRQIKDLF---LQGAYDTVRWEFGTCQPLSDEKDLTQLF 233
Query: 234 GWIGDIYSTLAMVNYPYPNSFLRPVPGYPIKKFCAALDSSTQSNVLLKLFEASQVYLNYT 293
+ + ++ LA +YPYP FL P+P P+K C L S Q L+ A VY N +
Sbjct: 234 XFARNAFTVLAXXDYPYPTDFLGPLPANPVKVGCDRLLSEAQRITGLRAL-AGLVY-NAS 291
Query: 294 QDAQCFKWDS--GSSIDELGL-TG-----WYFQTCTEMVMPFCSKD-NDMFEPYPWSFDG 344
C+ S D G TG W +Q CTE+ + F S + D F P++ +
Sbjct: 292 GSEHCYDIYRLYHSCADPTGCGTGPDARAWDYQACTEINLTFASNNVTDXFPDLPFTDEL 351
Query: 345 FRAECEKTFQVSPNPNIAEKLYGGLRIEAASNIIFSNGLLDPWSHAGVLHNISSSVVAVV 404
+ C T+ V P P+ + G + AASNIIFSNG LDPW+ G+ N+S+SV+AV
Sbjct: 352 RQRYCLDTWGVWPRPDWLLTSFWGGDLRAASNIIFSNGNLDPWAGGGIRRNLSASVIAVT 411
Query: 405 IPEGAHHLDLRAANKDDPESVIQARKYYERTFRKWINEFEISEQ 448
I GAHHLDLRA++ +DP SV++ARK +W+ +Q
Sbjct: 412 IQGGAHHLDLRASHPEDPASVVEARKLEATIIGEWVKAARREQQ 455
>pdb|2OCG|A Chain A, Crystal Structure Of Human Valacyclovir Hydrolase
pdb|2OCI|A Chain A, Crystal Structure Of Valacyclovir Hydrolase Complexed With
A Product Analogue
Length = 254
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Query: 340 WSFDGFRAECEK------TFQVSPNPNIAEKLYGGLRIEAASNIIFS-NGLLDPWSHAGV 392
+ +D F CEK F+ P+ NI L R++ + I+ L P HA
Sbjct: 160 YGYDYFARTCEKWVDGIRQFKHLPDGNICRHLLP--RVQCPALIVHGEKDPLVPRFHADF 217
Query: 393 LHNISSSVVAVVIPEGAHHLDLRAANK 419
+H ++PEG H+L LR A++
Sbjct: 218 IHKHVKGSRLHLMPEGKHNLHLRFADE 244
>pdb|2OCL|A Chain A, Crystal Structure Of Valacyclovir Hydrolase S122a Mutant
Length = 254
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Query: 340 WSFDGFRAECEK------TFQVSPNPNIAEKLYGGLRIEAASNIIFS-NGLLDPWSHAGV 392
+ +D F CEK F+ P+ NI L R++ + I+ L P HA
Sbjct: 160 YGYDYFARTCEKWVDGIRQFKHLPDGNICRHLLP--RVQCPALIVHGEKDPLVPRFHADF 217
Query: 393 LHNISSSVVAVVIPEGAHHLDLRAANK 419
+H ++PEG H+L LR A++
Sbjct: 218 IHKHVKGSRLHLMPEGKHNLHLRFADE 244
>pdb|2OCK|A Chain A, Crystal Structure Of Valacyclovir Hydrolase D123n Mutant
Length = 254
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Query: 340 WSFDGFRAECEK------TFQVSPNPNIAEKLYGGLRIEAASNIIFS-NGLLDPWSHAGV 392
+ +D F CEK F+ P+ NI L R++ + I+ L P HA
Sbjct: 160 YGYDYFARTCEKWVDGIRQFKHLPDGNICRHLLP--RVQCPALIVHGEKDPLVPRFHADF 217
Query: 393 LHNISSSVVAVVIPEGAHHLDLRAANK 419
+H ++PEG H+L LR A++
Sbjct: 218 IHKHVKGSRLHLMPEGKHNLHLRFADE 244
>pdb|1V54|C Chain C, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|1V54|P Chain P, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|1V55|C Chain C, Bovine Heart Cytochrome C Oxidase At The Fully Reduced
State
pdb|1V55|P Chain P, Bovine Heart Cytochrome C Oxidase At The Fully Reduced
State
pdb|2DYR|C Chain C, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|2DYR|P Chain P, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|2EIJ|C Chain C, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|2EIJ|P Chain P, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|2EIK|C Chain C, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Reduced State
pdb|2EIK|P Chain P, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Reduced State
pdb|2EIL|C Chain C, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Oxidized State
pdb|2EIL|P Chain P, Cadmium Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Oxidized State
pdb|2EIM|C Chain C, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Reduced State
pdb|2EIM|P Chain P, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Reduced State
pdb|2EIN|C Chain C, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Oxidized State
pdb|2EIN|P Chain P, Zinc Ion Binding Structure Of Bovine Heart Cytochrome C
Oxidase In The Fully Oxidized State
pdb|2ZXW|C Chain C, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (1-S X-Ray Exposure Dataset)
pdb|2ZXW|P Chain P, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (1-S X-Ray Exposure Dataset)
pdb|3ABL|C Chain C, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (15-S X-Ray Exposure Dataset)
pdb|3ABL|P Chain P, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (15-S X-Ray Exposure Dataset)
pdb|3ABM|C Chain C, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (200-S X-Ray Exposure Dataset)
pdb|3ABM|P Chain P, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State (200-S X-Ray Exposure Dataset)
pdb|3ABK|C Chain C, Bovine Heart Cytochrome C Oxidase At The No-Bound Fully
Reduced State (50k)
pdb|3ABK|P Chain P, Bovine Heart Cytochrome C Oxidase At The No-Bound Fully
Reduced State (50k)
pdb|3AG1|C Chain C, Bovine Heart Cytochrome C Oxidase In The Carbon
Monoxide-Bou Reduced State At 280 K
pdb|3AG1|P Chain P, Bovine Heart Cytochrome C Oxidase In The Carbon
Monoxide-Bou Reduced State At 280 K
pdb|3AG2|C Chain C, Bovine Heart Cytochrome C Oxidase In The Carbon
Monoxide-Bou Reduced State At 100 K
pdb|3AG2|P Chain P, Bovine Heart Cytochrome C Oxidase In The Carbon
Monoxide-Bou Reduced State At 100 K
pdb|3AG3|C Chain C, Bovine Heart Cytochrome C Oxidase In The Nitric
Oxide-Bound Reduced State At 100 K
pdb|3AG3|P Chain P, Bovine Heart Cytochrome C Oxidase In The Nitric
Oxide-Bound Reduced State At 100 K
pdb|3AG4|C Chain C, Bovine Heart Cytochrome C Oxidase In The Cyanide Ion-Bound
F Reduced State At 100 K
pdb|3AG4|P Chain P, Bovine Heart Cytochrome C Oxidase In The Cyanide Ion-Bound
F Reduced State At 100 K
pdb|2Y69|C Chain C, Bovine Heart Cytochrome C Oxidase Re-Refined With
Molecular Oxygen
pdb|2Y69|P Chain P, Bovine Heart Cytochrome C Oxidase Re-Refined With
Molecular Oxygen
pdb|3ASN|C Chain C, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
State Measured At 1.7470 Angstrom Wavelength
pdb|3ASN|P Chain P, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
State Measured At 1.7470 Angstrom Wavelength
pdb|3ASO|C Chain C, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
State Measured At 0.9 Angstrom Wavelength
pdb|3ASO|P Chain P, Bovine Heart Cytochrome C Oxidase In The Fully Oxidized
State Measured At 0.9 Angstrom Wavelength
pdb|2YBB|N Chain N, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2DYS|C Chain C, Bovine Heart Cytochrome C Oxidase Modified By Dccd
pdb|2DYS|P Chain P, Bovine Heart Cytochrome C Oxidase Modified By Dccd
Length = 261
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 311 GLTGWYFQTCTEMVMPFCSKDNDMFEPYPWSFDGFRAECEKTFQVSPNPNIAEKLYGGLR 370
GLT W+ ++M +M Y W D R E TFQ P + + L G+
Sbjct: 30 GLTMWFHFNSMTLLM--IGLTTNMLTMYQWWRDVIR---ESTFQGHHTPAVQKGLRYGMI 84
Query: 371 IEAASNIIFSNGLLDPWSHAGV 392
+ S ++F G + H+ +
Sbjct: 85 LFIISEVLFFTGFFWAFYHSSL 106
>pdb|1OCC|C Chain C, Structure Of Bovine Heart Cytochrome C Oxidase At The
Fully Oxidized State
pdb|1OCC|P Chain P, Structure Of Bovine Heart Cytochrome C Oxidase At The
Fully Oxidized State
pdb|2OCC|C Chain C, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|2OCC|P Chain P, Bovine Heart Cytochrome C Oxidase At The Fully Oxidized
State
pdb|1OCO|C Chain C, Bovine Heart Cytochrome C Oxidase In Carbon Monoxide-bound
State
pdb|1OCO|P Chain P, Bovine Heart Cytochrome C Oxidase In Carbon Monoxide-bound
State
pdb|1OCR|C Chain C, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|1OCR|P Chain P, Bovine Heart Cytochrome C Oxidase In The Fully Reduced
State
pdb|1OCZ|C Chain C, Bovine Heart Cytochrome C Oxidase In Azide-Bound State
pdb|1OCZ|P Chain P, Bovine Heart Cytochrome C Oxidase In Azide-Bound State
Length = 261
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 311 GLTGWYFQTCTEMVMPFCSKDNDMFEPYPWSFDGFRAECEKTFQVSPNPNIAEKLYGGLR 370
GLT W+ ++M +M Y W D R E TFQ P + + L G+
Sbjct: 30 GLTMWFHFNSMTLLM--IGLTTNMLTMYQWWRDVIR---ESTFQGHHTPAVQKGLRYGMI 84
Query: 371 IEAASNIIFSNGLLDPWSHAGV 392
+ S ++F G + H+ +
Sbjct: 85 LFIISEVLFFTGFFWAFYHSSL 106
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 130 IAFGGSYGGMLASWLRMKYPHIVQGALAASAP-IWAFPNMAP 170
+ G +GGML ++ + YP V+ + + P I A PNM+P
Sbjct: 330 VFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANPNMSP 371
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 130 IAFGGSYGGMLASWLRMKYPHIVQGALAASAP-IWAFPNMAP 170
+ G +GGML ++ + YP V+ + + P I A PNM+P
Sbjct: 111 VFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANPNMSP 152
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 130 IAFGGSYGGMLASWLRMKYPHIVQGALAASAP-IWAFPNMAP 170
+ G +GGML ++ + YP V+ + + P I A PNM+P
Sbjct: 126 VFIGHDWGGMLVWYMALFYPERVRAVASLNTPFIPANPNMSP 167
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,431,282
Number of Sequences: 62578
Number of extensions: 718842
Number of successful extensions: 1844
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1826
Number of HSP's gapped (non-prelim): 16
length of query: 499
length of database: 14,973,337
effective HSP length: 103
effective length of query: 396
effective length of database: 8,527,803
effective search space: 3377009988
effective search space used: 3377009988
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)