RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10890
(499 letters)
>gnl|CDD|218645 pfam05577, Peptidase_S28, Serine carboxypeptidase S28. These
serine proteases include several eukaryotic enzymes such
as lysosomal Pro-X carboxypeptidase,
dipeptidyl-peptidase II, and thymus-specific serine
peptidase.
Length = 433
Score = 287 bits (736), Expect = 2e-92
Identities = 140/455 (30%), Positives = 205/455 (45%), Gaps = 51/455 (11%)
Query: 1 VDQFTYTSNQTFQLKYLYNDKYWDKKNGPIFFYCGNEGAVEVFTENTGFLWESAKRFKAL 60
+D F ++N+TFQ +Y YND+++ + GPIF G EG G + AK F AL
Sbjct: 3 LDHFDPSNNRTFQQRYFYNDQHY-RNGGPIFLMIGGEGPESASWVRNGHWLDLAKEFGAL 61
Query: 61 IVFSEHRYYGDSLPFGNKSFDSVSTRGYLSSEQALEDFVDVIEYIQSSAEGEKDRALEGD 120
+ EHR+YG S P G+ S ++ YLSS QAL D I+ A+
Sbjct: 62 VFSLEHRFYGQSKPIGDLSTANLR---YLSSLQALADVASFIK------------AMNQK 106
Query: 121 YNLGRRYPVIAFGGSYGGMLASWLRMKYPHIVQGALAASAPIWAFPNMAPCNFYSKTVTE 180
+N I FGGSY G LA+W R KYPH+V GA+A+SAP+ A + Y+ V
Sbjct: 107 FNGLSSSKWITFGGSYSGSLAAWARKKYPHLVVGAVASSAPLLAKVDF---KEYNMVVET 163
Query: 181 VFKNASQNCHDSIKASWKLIDDVTKDNLGKQWLTDNWKLCTPLETTD--DVQKFKGWIGD 238
C+D+++ + ++++ G+Q L+ +LC PL T D+ F I
Sbjct: 164 SLAQTGGECYDAVENGFAEVEELLLTKEGRQALSKLLQLCPPLNVTTDLDILNFFSNIYS 223
Query: 239 IYSTLAMVNYPYPNSFLRPVPGYPIKKFCAALDSSTQSNVLLKLFEASQVY--------L 290
+ +V Y Y + GY I C + ++T ++++L++ Q++
Sbjct: 224 PFQ--GVVQYTYDGQGNSTLNGYSIPDLCKIMLNATTTDLILRVEVLIQLFNYLNQKSGN 281
Query: 291 NYTQD--AQCF----KWDSGSSIDELGLTGWYFQTCTEMVMPFCS-KDNDMF-EPYPWSF 342
N T D Q SGS D+ W +QTCTE + N F P P S
Sbjct: 282 NSTMDISYQLANASYGDSSGSYADDR---QWTWQTCTEFGWYQTTDSGNGPFGSPVPASL 338
Query: 343 DGFRAECEKTF-------QVSPNPNIAEKLYGGLRIEAASNIIFSNGLLDPWSHAGVLHN 395
F C F ++S + YGG A+N++F NG LDPW G +
Sbjct: 339 --FIDMCMDVFGADYNSTKISLRVSATNYYYGGADNPNATNVVFVNGDLDPWHALGKTDS 396
Query: 396 ISSSVVAVVIPEGAHHLDLRAANKDDPESVIQARK 430
SSVV +IP AH D+ A D + AR
Sbjct: 397 TDSSVVPYLIPGAAHCADMYPARPSDSPELKAARA 431
>gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This family
contains alpha/beta hydrolase enzymes of diverse
specificity.
Length = 187
Score = 37.4 bits (87), Expect = 0.007
Identities = 21/117 (17%), Positives = 35/117 (29%), Gaps = 30/117 (25%)
Query: 54 AKRFKALIVFSEHRYYGDSLPFGNKSFDSVSTRGYLSSEQALEDFVDVIEYIQSSAEGEK 113
A ++ L + +GDS R S E D +++ +
Sbjct: 22 AAGYRVLAP--DLPGHGDS---------DGPPRTPYSLEDDAADLAALLDALGLG----- 65
Query: 114 DRALEGDYNLGRRYPVIAFGGSYGGMLASWLRMKYPHIVQGALAASAPIWAFPNMAP 170
PV+ G S GG +A + P V G + S P+ +
Sbjct: 66 --------------PVVLVGHSLGGAVALAAAARRPERVAGLVLISPPLRDLEELLA 108
>gnl|CDD|235385 PRK05277, PRK05277, chloride channel protein; Provisional.
Length = 438
Score = 37.9 bits (89), Expect = 0.009
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 123 LGRRYPVIAFGGSYGGMLASWLRMKYPHIVQGALAASA 160
LGR P + GG+ G M+ R++ LAA A
Sbjct: 110 LGREGPTVQMGGNIGRMVLDIFRLRSDEARHTLLAAGA 147
>gnl|CDD|215859 pfam00326, Peptidase_S9, Prolyl oligopeptidase family.
Length = 212
Score = 36.0 bits (84), Expect = 0.021
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 14/68 (20%)
Query: 95 LEDFVDVIEYIQSSAEGEKDRALEGDYNLGRRYPVIAFGGSYGGMLASWLRMKYPHIVQG 154
+DF+ EY+ + + DR + +GGSYGG L + P + +
Sbjct: 45 FDDFIAAAEYLIAQGYVDPDR-------------LAIWGGSYGGYLTGAALNQRPDLFKA 91
Query: 155 ALAASAPI 162
A+A P+
Sbjct: 92 AVAV-VPV 98
>gnl|CDD|201306 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This
catalytic domain is found in a very wide range of
enzymes.
Length = 226
Score = 33.7 bits (77), Expect = 0.14
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 129 VIAFGGSYGGMLASWLRMKYPHIVQGALAASAPIWAF 165
V G S GG++A KYP V+ + A
Sbjct: 44 VNLVGHSMGGLIALAYAAKYPDRVKALVLVGTVHPAG 80
>gnl|CDD|223669 COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta
hydrolase superfamily) [General function prediction
only].
Length = 282
Score = 32.7 bits (73), Expect = 0.34
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 128 PVIAFGGSYGGMLASWLRMKYPHIVQGALAASAPIWAFPNMAP 170
V+ G S GG +A L +++P V+G + A
Sbjct: 89 KVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAPPPGLLEAA 131
>gnl|CDD|205435 pfam13255, DUF4046, Protein of unknown function (DUF4046). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 64 and 331 amino acids
in length.
Length = 302
Score = 32.4 bits (74), Expect = 0.48
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 19/92 (20%)
Query: 163 WAFPNMAPCNFYSKTVTEVFKNASQNCHDSIKASWKLIDDVTKDNLGKQWLTDNWKLCTP 222
W F M P NF++K + A + +I+ +L D+ + GK+WL + KL P
Sbjct: 90 WEF-GMTPLNFWTK------EKALEALKWTIEEKEQLSDEELLEVYGKKWLEKH-KLSAP 141
Query: 223 LETTDDVQKFKGWIGDIYSTLAMVNYPYPNSF 254
L W G Y AM+N YPN F
Sbjct: 142 LRVY--------WNGSPY---AMINDLYPNRF 162
>gnl|CDD|148618 pfam07114, DUF1370, Protein of unknown function (DUF1370). This
family consists of several hypothetical eukaryotic
proteins of around 200 residues in length. Members of
this family seem to be specific to mammals and their
function is unknown.
Length = 187
Score = 30.5 bits (69), Expect = 1.4
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
Query: 101 VIEYIQSSAE--GEKDRALEGDYNLGRRYPVIAFGGSYGGMLASWLRMKYPHIVQGALAA 158
+IE I+ E E DR L L ++ G++A+ L + + Q AL +
Sbjct: 9 IIEIIEKKFEQLPENDRTL-----LIYGSLYFGTNAAFSGLIANSLFRRILKVTQAALKS 63
Query: 159 SAPIWAFPNMAPCNFYSKTVTEVFKNASQNC 189
S P+ P + Y VT+ + NC
Sbjct: 64 SLPMAVLPFLTTVVTYKLFVTDPLLSGDLNC 94
>gnl|CDD|178262 PLN02656, PLN02656, tyrosine transaminase.
Length = 409
Score = 30.7 bits (69), Expect = 1.7
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 225 TTDDVQKFKGWIGDIYSTLAMVNYPYPNSFLRPVPGYPIKKFCAAL 270
+ DDV G I L+M+ P N L P PG+PI + CAA
Sbjct: 95 SLDDVFITSGCTQAIDVALSMLARPGANILL-PRPGFPIYELCAAF 139
>gnl|CDD|216224 pfam00975, Thioesterase, Thioesterase domain. Peptide synthetases
are involved in the non-ribosomal synthesis of peptide
antibiotics. Next to the operons encoding these enzymes,
in almost all cases, are genes that encode proteins that
have similarity to the type II fatty acid thioesterases
of vertebrates. There are also modules within the
peptide synthetases that also share this similarity.
With respect to antibiotic production, thioesterases are
required for the addition of the last amino acid to the
peptide antibiotic, thereby forming a cyclic antibiotic.
Thioesterases (non-integrated) have molecular masses of
25-29 kDa.
Length = 224
Score = 30.4 bits (69), Expect = 1.8
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 11/66 (16%)
Query: 76 GNKSFDSVSTRGYLSSEQALEDFVDVIEYIQSSAEGEKDRALEGDYNLGRRYPVIAFGGS 135
G F++V G E L ++ E AE + EG Y L FG S
Sbjct: 25 GTAEFNAVQLPGRERGEPPLTSIEELAEEY---AEALRRIQPEGPYAL--------FGHS 73
Query: 136 YGGMLA 141
GG+LA
Sbjct: 74 MGGLLA 79
>gnl|CDD|216055 pfam00674, DUP, DUP family. This family consists of several
yeast proteins of unknown functions. Swiss-prot
annotates these as belonging to the DUP family. Several
members of this family contain an internal duplication
of this region.
Length = 108
Score = 29.2 bits (66), Expect = 1.9
Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 8/34 (23%)
Query: 2 DQFTYTSNQTFQLKYLYNDKYWDKKNGPIFFYCG 35
D Y NQ YL+ K W N P FFY G
Sbjct: 63 DTIAYNMNQ-----YLFEHKLW---NTPYFFYDG 88
>gnl|CDD|221718 pfam12695, Abhydrolase_5, Alpha/beta hydrolase family. This family
contains a diverse range of alpha/beta hydrolase
enzymes.
Length = 145
Score = 29.7 bits (67), Expect = 2.1
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 128 PVIAFGGSYGGMLASWLRMKYPHIVQGALAASAPIW 163
++ G S GG +A L + P + + A+
Sbjct: 59 RIVLVGHSLGGGVALLLAARDPRVKAAVVLAAGDPP 94
>gnl|CDD|238504 cd01031, EriC, ClC chloride channel EriC. This domain is found in
the EriC chloride transporters that mediate the extreme
acid resistance response in eubacteria and archaea. This
response allows bacteria to survive in the acidic
environments by decarboxylation-linked proton
utilization. As shown for Escherichia coli EriC, these
channels can counterbalance the electric current
produced by the outwardly directed virtual proton pump
linked to amino acid decarboxylation. The EriC proteins
belong to the ClC superfamily of chloride ion channels,
which share a unique double-barreled architecture and
voltage-dependent gating mechanism. The
voltage-dependent gating is conferred by the permeating
anion itself, acting as the gating charge. In
Escherichia coli EriC, a glutamate residue that
protrudes into the pore is thought to participate in
gating by binding to a Cl- ion site within the
selectivity filter.
Length = 402
Score = 30.6 bits (70), Expect = 2.2
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 9/49 (18%)
Query: 123 LGRRYPVIAFGGSYGGMLASWLRMKYPH----IVQGA---LAA--SAPI 162
LGR P + G + G ++ W + I GA LAA +AP+
Sbjct: 103 LGREGPSVQIGAAIGQGVSKWFKTSPEERRQLIAAGAAAGLAAAFNAPL 151
>gnl|CDD|224932 COG2021, MET2, Homoserine acetyltransferase [Amino acid transport
and metabolism].
Length = 368
Score = 30.4 bits (69), Expect = 2.4
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 133 GGSYGGMLA-SWLRMKYPHIVQGA--LAASAP 161
GGS GGM A W YP V+ A +A +A
Sbjct: 153 GGSMGGMQALEWAIR-YPDRVRRAIPIATAAR 183
>gnl|CDD|220999 pfam11144, DUF2920, Protein of unknown function (DUF2920). This
bacterial family of proteins has no known function.
Length = 403
Score = 30.3 bits (69), Expect = 2.7
Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 8/83 (9%)
Query: 121 YNLGRRYPVIAFGGSYGGMLASWLRMKYPHIVQGALAASA---PIWAF---PNMAPCNFY 174
G PVI G SYGG LA+ + P V G + S+ P+ + + +
Sbjct: 178 PKFGGNLPVILIGSSYGGYLANLIAKIAPWYVDGVIDNSSYALPLLRYIFGREIDYTEYI 237
Query: 175 SKTVTEVFKNASQNCHDSIKASW 197
FK+ C D K W
Sbjct: 238 CFADFFFFKHIRLYCFD--KTYW 258
>gnl|CDD|220232 pfam09421, FRQ, Frequency clock protein. The frequency clock
protein, is the central component of the frq-based
circadian negative feedback loop, regulates various
aspects of the circadian clock in Neurospora crassa.
This protein has been shown to interact with itself via
a coiled-coil.
Length = 989
Score = 30.4 bits (68), Expect = 2.7
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 436 FRKWINEFEISEQRNREEFKRYKMRGNE 463
+R I++ + QR +EE KRYK G++
Sbjct: 133 YRSVIDDLTVEIQRLKEELKRYKQFGSD 160
>gnl|CDD|234678 PRK00175, metX, homoserine O-acetyltransferase; Provisional.
Length = 379
Score = 29.8 bits (68), Expect = 3.1
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 133 GGSYGGMLA-SWLRMKYPHIVQGALA-ASAP 161
GGS GGM A W YP V+ AL AS+
Sbjct: 153 GGSMGGMQALEWAID-YPDRVRSALVIASSA 182
>gnl|CDD|223116 COG0038, EriC, Chloride channel protein EriC [Inorganic ion
transport and metabolism].
Length = 443
Score = 29.6 bits (67), Expect = 3.7
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 9/49 (18%)
Query: 123 LGRRYPVIAFGGSYGGMLASWLRMKYPH----IVQGA---LAAS--API 162
LGR P + G + G +L L++ + GA LAA+ AP+
Sbjct: 130 LGREGPSVQIGAAIGSLLGRLLKLSREDRRILLAAGAAAGLAAAFNAPL 178
>gnl|CDD|180488 PRK06249, PRK06249, 2-dehydropantoate 2-reductase; Provisional.
Length = 313
Score = 29.5 bits (67), Expect = 4.1
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 10/42 (23%)
Query: 125 RRYPVI---AFGGSYGGMLAS-------WLRMKYPHIVQGAL 156
R +I A GG YG MLA LR Y + + L
Sbjct: 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDYEAVRENGL 47
>gnl|CDD|114306 pfam05576, Peptidase_S37, PS-10 peptidase S37. These serine
proteases have been found in Streptomyces species.
Length = 448
Score = 29.3 bits (65), Expect = 5.8
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 130 IAFGGSYGGMLASWLRMKYPHIVQGALAASAP 161
I+ GGS GGM A++ YP + G +A AP
Sbjct: 137 ISTGGSKGGMTATYYERFYPRDMDGVVAYVAP 168
>gnl|CDD|238974 cd02016, TPP_E1_OGDC_like, Thiamine pyrophosphate (TPP) family, E1
of OGDC-like subfamily, TPP-binding module; composed of
proteins similar to the E1 component of the
2-oxoglutarate dehydrogenase multienzyme complex (OGDC).
OGDC catalyzes the oxidative decarboxylation of
2-oxoglutarate to succinyl-CoA and carbon dioxide, a key
reaction of the tricarboxylic acid cycle.
Length = 265
Score = 28.6 bits (65), Expect = 6.2
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
Query: 418 NKDDPESVIQARKY---YERTFRK 438
N DDPE+V++A + Y + F+K
Sbjct: 214 NGDDPEAVVRATRLALEYRQKFKK 237
>gnl|CDD|236565 PRK09557, PRK09557, fructokinase; Reviewed.
Length = 301
Score = 28.8 bits (65), Expect = 7.1
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 33 YCGNEGAVEVFTENTGF 49
YCG +G +E F TGF
Sbjct: 177 YCGKQGCIETFISGTGF 193
>gnl|CDD|237408 PRK13517, PRK13517, carboxylate-amine ligase; Provisional.
Length = 373
Score = 28.7 bits (65), Expect = 7.5
Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Query: 144 LRMKYPHIVQGALAASAPIWA 164
LR PH++ AL+A++P W
Sbjct: 153 LRPWLPHLL--ALSANSPFWR 171
>gnl|CDD|240040 cd04684, Nudix_Hydrolase_25, Contains a crystal structure of the
Nudix hydrolase from Enterococcus faecalis, which has an
unknown function. In general, members of the Nudix
hydrolase superfamily catalyze the hydrolysis of
NUcleoside DIphosphates linked to other moieties, X.
Enzymes belonging to this superfamily require a divalent
cation, such as Mg2+ or Mn2+, for their activity. They
also contain a highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which forms a
structural motif that functions as a metal binding and
catalytic site. Substrates of nudix hydrolases include
intact and oxidatively damaged nucleoside triphosphates,
dinucleoside polyphosphates, nucleotide-sugars and
dinucleotide enzymes. These substrates are metabolites
or cell signaling molecules that require regulation
during different stages of the cell cycle or during
periods of stress. In general, the role of the nudix
hydrolase is to sanitize the nucleotide pools and to
maintain cell viability, thereby serving as surveillance
& "house-cleaning" enzymes. Substrate specificity is
used to define families within the superfamily.
Differences in substrate specificity are determined by
the N-terminal extension or by residues in variable loop
regions. Mechanistically, substrate hydrolysis occurs by
a nucleophilic substitution reaction, with variation in
the numbers and roles of divalent cations required.
Length = 128
Score = 27.6 bits (62), Expect = 8.0
Identities = 10/40 (25%), Positives = 15/40 (37%)
Query: 169 APCNFYSKTVTEVFKNASQNCHDSIKASWKLIDDVTKDNL 208
C FY V + DS A+W +D+ + L
Sbjct: 80 HLCVFYDARVVGGALPVQEPGEDSHGAAWLPLDEAIERLL 119
>gnl|CDD|146149 pfam03361, Herpes_IE2_3, Herpes virus intermediate/early protein
2/3. These viral sequences are similar to UL117 protein
of human and chimpanzee cytomegalovirus, and to
intermediate/early proteins 2 and 3 of certain herpes
viruses. UL117 is thought to be a glycoprotein that is
expressed at early and late times after infection. This
region is close to the C-terminus of the protein and may
be a transmembrane region.
Length = 162
Score = 27.7 bits (62), Expect = 8.9
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 167 NMAPCNFYSKTVTEVFKNASQNCHDSIKASWKLIDDVTKDN 207
++ E S+ C ++A W L ++ T D
Sbjct: 64 EHTKPVVHTP---ETAVATSEACRQGVQAVWDLKENHTHDL 101
>gnl|CDD|223477 COG0400, COG0400, Predicted esterase [General function prediction
only].
Length = 207
Score = 28.0 bits (63), Expect = 9.1
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 115 RALEGDYNLGRRYPVIAFGGSYGGMLASWLRMKYPHIVQGALAASA 160
L +Y + +I G S G +A L + P + GA+ S
Sbjct: 88 EELAEEYGIDSS-RIILIGFSQGANIALSLGLTLPGLFAGAILFSG 132
>gnl|CDD|188121 TIGR01250, pro_imino_pep_2, proline-specific peptidase, Bacillus
coagulans-type subfamily. This model describes a
subfamily of the alpha/beta fold family of hydrolases.
Characterized members include prolinases (Pro-Xaa
dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC
3.4.11.5), and a leucyl aminopeptidase.
Length = 289
Score = 28.5 bits (64), Expect = 9.2
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 132 FGGSYGGMLASWLRMKYPHIVQGAL----AASAPIW 163
G S+GGMLA +KY ++G + SAP +
Sbjct: 102 LGHSWGGMLAQEYALKYGQHLKGLIISSMLDSAPEY 137
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.422
Gapped
Lambda K H
0.267 0.0681 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,434,500
Number of extensions: 2432976
Number of successful extensions: 2136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2129
Number of HSP's successfully gapped: 36
Length of query: 499
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 398
Effective length of database: 6,457,848
Effective search space: 2570223504
Effective search space used: 2570223504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.4 bits)