RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10890
(499 letters)
>3n2z_B Lysosomal Pro-X carboxypeptidase; alpha/beta hydrolase, PRCP,
serine carboxypeptidase, hydrola; HET: NAG; 2.79A {Homo
sapiens}
Length = 446
Score = 373 bits (958), Expect = e-125
Identities = 203/446 (45%), Positives = 277/446 (62%), Gaps = 17/446 (3%)
Query: 1 VDQFTYTSNQTFQLKYLYNDKYWDKKNGPIFFYCGNEGAVEVFTENTGFLWESAKRFKAL 60
VD F + + +TF +YL DKYW K G I FY GNEG + F NTGF+W+ A+ KA+
Sbjct: 12 VDHFGFNTVKTFNQRYLVADKYWKKNGGSILFYTGNEGDIIWFCNNTGFMWDVAEELKAM 71
Query: 61 IVFSEHRYYGDSLPFGNKSFDSVSTRGYLSSEQALEDFVDVIEYIQSSAEGEKDRALEGD 120
+VF+EHRYYG+SLPFG+ SF +L+SEQAL DF ++I++++
Sbjct: 72 LVFAEHRYYGESLPFGDNSFKDSRHLNFLTSEQALADFAELIKHLKR------------T 119
Query: 121 YNLGRRYPVIAFGGSYGGMLASWLRMKYPHIVQGALAASAPIWAFPNMAPCNFYSKTVTE 180
PVIA GGSYGGMLA+W RMKYPH+V GALAASAPIW F ++ PC + K VT
Sbjct: 120 IPGAENQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASAPIWQFEDLVPCGVFMKIVTT 179
Query: 181 VFKNASQNCHDSIKASWKLIDDVTKDNLGKQWLTDNWKLCTPLETTDDVQKFKGWIGDIY 240
F+ + +C +SI SW I+ ++ G QWLT LC+PL T+ D+Q K WI + +
Sbjct: 180 DFRKSGPHCSESIHRSWDAINRLSNTGSGLQWLTGALHLCSPL-TSQDIQHLKDWISETW 238
Query: 241 STLAMVNYPYPNSFLRPVPGYPIKKFCAALDSSTQSN--VLLKLFEASQVYLNYTQDAQC 298
LAMV+YPY ++FL+P+P +PIK C L + S+ +L +F+A VY NY+ +C
Sbjct: 239 VNLAMVDYPYASNFLQPLPAWPIKVVCQYLKNPNVSDSLLLQNIFQALNVYYNYSGQVKC 298
Query: 299 FKWDSGSSIDELGLTGWYFQTCTEMVMPFC-SKDNDMFEPYPWSFDGFRAECEKTFQVSP 357
S ++ LG GW +Q CTE+VMPFC + +DMFEP+ W+ +C + + V P
Sbjct: 299 LNI-SETATSSLGTLGWSYQACTEVVMPFCTNGVDDMFEPHSWNLKELSDDCFQQWGVRP 357
Query: 358 NPNIAEKLYGGLRIEAASNIIFSNGLLDPWSHAGVLHNISSSVVAVVIPEGAHHLDLRAA 417
P+ +YGG I + +NI+FSNG LDPWS GV +I+ ++VAV I EGAHHLDLR
Sbjct: 358 RPSWITTMYGGKNISSHTNIVFSNGELDPWSGGGVTKDITDTLVAVTISEGAHHLDLRTK 417
Query: 418 NKDDPESVIQARKYYERTFRKWINEF 443
N DP SV+ AR R + WI +F
Sbjct: 418 NALDPMSVLLARSLEVRHMKNWIRDF 443
>3jyh_A Dipeptidyl-peptidase 2; structural genomics, structural genomics
consortium, SGC, aminopeptidase, cleavage on PAIR of
basic residues; HET: NAG BMA; 2.19A {Homo sapiens} PDB:
3n0t_A*
Length = 469
Score = 349 bits (895), Expect = e-116
Identities = 166/467 (35%), Positives = 244/467 (52%), Gaps = 28/467 (5%)
Query: 1 VDQFTY--TSNQTFQLKYLYNDKYWDKKNGPIFFYCGNEGAVEVFTENTGFLWESAKRFK 58
+D F + N+TF ++L +D++W + GPIFFY GNEG V F N+ F+ E A
Sbjct: 17 LDHFNFERFGNKTFPQRFLVSDRFWVRGEGPIFFYTGNEGDVWAFANNSAFVAELAAERG 76
Query: 59 ALIVFSEHRYYGDSLPFGNKSFDSVSTRGYLSSEQALEDFVDVIEYIQSSAEGEKDRALE 118
AL+VF+EHRYYG SLPFG +S L+ EQAL DF +++ ++ +
Sbjct: 77 ALLVFAEHRYYGKSLPFGAQSTQR-GHTELLTVEQALADFAELLRALRRDLGAQDA---- 131
Query: 119 GDYNLGRRYPVIAFGGSYGGMLASWLRMKYPHIVQGALAASAPIWAFPNMAPCNFYSKTV 178
P IAFGGSYGGML+++LRMKYPH+V GALAASAP+ A + N + + V
Sbjct: 132 ---------PAIAFGGSYGGMLSAYLRMKYPHLVAGALAASAPVLAVAGLGDSNQFFRDV 182
Query: 179 TEVFKNASQNCHDSIKASWKLIDDVTKDNLGKQWLTDNWKLCTPLETTDDVQKFKGWIGD 238
T F+ S C ++ +++ I D+ + + C PL D+ + + +
Sbjct: 183 TADFEGQSPKCTQGVREAFRQIKDL-FLQGAYDTVRWEFGTCQPLSDEKDLTQLFMFARN 241
Query: 239 IYSTLAMVNYPYPNSFLRPVPGYPIKKFCAALDSSTQSNVLLKLFEASQVYLNYTQDAQC 298
++ LAM++YPYP FL P+P P+K C L S Q + L + + N + C
Sbjct: 242 AFTVLAMMDYPYPTDFLGPLPANPVKVGCDRLLSEAQR--ITGLRALAGLVYNASGSEHC 299
Query: 299 FKW--------DSGSSIDELGLTGWYFQTCTEMVMPFC-SKDNDMFEPYPWSFDGFRAEC 349
+ D W +Q CTE+ + F + DMF P++ + + C
Sbjct: 300 YDIYRLYHSCADPTGCGTGPDARAWDYQACTEINLTFASNNVTDMFPDLPFTDELRQRYC 359
Query: 350 EKTFQVSPNPNIAEKLYGGLRIEAASNIIFSNGLLDPWSHAGVLHNISSSVVAVVIPEGA 409
T+ V P P+ + G + AASNIIFSNG LDPW+ G+ N+S+SV+AV I GA
Sbjct: 360 LDTWGVWPRPDWLLTSFWGGDLRAASNIIFSNGNLDPWAGGGIRRNLSASVIAVTIQGGA 419
Query: 410 HHLDLRAANKDDPESVIQARKYYERTFRKWINEFEISEQRNREEFKR 456
HHLDLRA++ +DP SV++ARK +W+ +Q R
Sbjct: 420 HHLDLRASHPEDPASVVEARKLEATIIGEWVKAARREQQPALRGGPR 466
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.2 bits (122), Expect = 7e-07
Identities = 73/449 (16%), Positives = 128/449 (28%), Gaps = 131/449 (29%)
Query: 79 SFDSVSTRGYLSSEQALEDFVDVIEYIQSSAEGEKDRALEGDYNLGRRYPVIAF------ 132
V T + + Q E F ++ + + D L ++ + +
Sbjct: 19 VL-LVPTASFFIASQLQEQFNKILP--EPTEGFAADDEPTTPAELVGKF--LGYVSSLVE 73
Query: 133 ---GGSYGGMLASWLRMKYPHIVQG----ALAASAPIWAFPNMAPCNFYSKTVTEVFKNA 185
G + +L L ++G ALAA +K + + + A
Sbjct: 74 PSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLL----QENDTTLVKTKELIKNYITA 129
Query: 186 SQ-------NCHDSIKASWKLIDDVTKDN------LGKQWLTDNW--------------- 217
+S L V + N G Q TD++
Sbjct: 130 RIMAKRPFDKKSNS-----ALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLV 184
Query: 218 ---------KLCTPLETTDDVQKFKGWIGDIYSTLAMVNYPYPNSFLRPVPGYPIKKFCA 268
L + TT D +K +I L P++ P Y
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE-----NPSN--TPDKDY------- 230
Query: 269 ALDSSTQSNVLLKLFEASQVYLNYTQDAQCFKWDSGSSIDEL-GLTGWYFQTCTE-MVMP 326
L S S L+ + + + Y A+ + G L G TG ++ +V
Sbjct: 231 -LLSIPISCPLIGVIQLAH----YVVTAKLLGFTPGELRSYLKGATG-----HSQGLVTA 280
Query: 327 FC---SKDNDMFEP-----YPWSF-DGFRAECEKTFQVSPNPNIAEKLY--------G-- 367
+ + F F G R C + + PN ++ + G
Sbjct: 281 VAIAETDSWESFFVSVRKAITVLFFIGVR--CYEAY---PNTSLPPSILEDSLENNEGVP 335
Query: 368 -------GLRIEAASNIIFS-NGLLDPWSHAGV-LHNISSSVVAVVI---PEGAHHLDLR 415
L E + + N L + L N +V+ P+ + L+L
Sbjct: 336 SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN---GAKNLVVSGPPQSLYGLNLT 392
Query: 416 AANKDDPESVIQAR-KYYERTFRKWINEF 443
P + Q+R + ER K+ N F
Sbjct: 393 LRKAKAPSGLDQSRIPFSERKL-KFSNRF 420
Score = 41.6 bits (97), Expect = 7e-04
Identities = 20/148 (13%), Positives = 39/148 (26%), Gaps = 41/148 (27%)
Query: 153 QGALAASAPIWAFPNMAPCNFYSKTVTEVFKNASQNCHDSIKASWKLIDDVTKDNLG--- 209
QG+ M + Y + + W D+ KD G
Sbjct: 1624 QGS--------QEQGMG-MDLYKT-------------SKAAQDVWNRADNHFKDTYGFSI 1661
Query: 210 KQWLTDNWKLCTPLETTDDVQKFKGWIGDIYSTLAMVNYPYPNSFLRPVPGYPIKKFCAA 269
+ +N T + ++ I + YS + +
Sbjct: 1662 LDIVINNPVNLTIHFGGEKGKR----IRENYSAMIFETIVDGKLKTEKI--------FKE 1709
Query: 270 LDSSTQSNVLLKLFEASQVYLNYTQDAQ 297
++ + S F + + L+ TQ Q
Sbjct: 1710 INEHSTSYT----FRSEKGLLSATQFTQ 1733
Score = 28.5 bits (63), Expect = 6.2
Identities = 41/292 (14%), Positives = 82/292 (28%), Gaps = 107/292 (36%)
Query: 50 LWESAKRFKALIVFSEHRYYGDSLP---FGNKSFDSVSTRGYLSSEQALEDFVDVIEYIQ 106
+W A F + YG S+ N ++ G + + + + + +
Sbjct: 1645 VWNRADNH-----FKDT--YGFSILDIVINNPVNLTIHFGGEKG--KRIRENYSAMIF-E 1694
Query: 107 SSAEGEKDRALEGDYNLGRRYPVIAFGGSYGGM--------------LASWLRMKYPHIV 152
+ +G K + + + F G + A++ +K ++
Sbjct: 1695 TIVDG-KLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLI 1753
Query: 153 Q----------G---ALAASAPIWAFPNMAPCNFYSKTVTEVFK--NASQNCHDSIKASW 197
G ALA+ A + + V VF Q
Sbjct: 1754 PADATFAGHSLGEYAALASLADVMSI---------ESLVEVVFYRGMTMQVA-------- 1796
Query: 198 KLIDDVTKDNLGKQWLTDNWKLC--TP------------LETTDDVQKFKGWIGDIYSTL 243
V +D LG+ N+ + P + V K GW+ +
Sbjct: 1797 -----VPRDELGR----SNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWL------V 1841
Query: 244 AMVNYPYPNSFLRPVPG--Y-------PIKKFCAALDSSTQSNV-LLKLFEA 285
+VNY N V Y + L+ + +++L ++
Sbjct: 1842 EIVNY---N-----VENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKS 1885
>3hju_A Monoglyceride lipase; alpha/beta hydrolase, hydrolase, serine
esterase; 2.20A {Homo sapiens}
Length = 342
Score = 45.1 bits (107), Expect = 3e-05
Identities = 30/142 (21%), Positives = 42/142 (29%), Gaps = 41/142 (28%)
Query: 51 WESAKRFKALIVFS----EH--RYYGDSLPFGNK---------SFD------SVSTRGYL 89
W+ KALI S EH RY + D S R +
Sbjct: 53 WKPTGTPKALIFVSHGAGEHSGRYE----ELARMLMGLDLLVFAHDHVGHGQSEGERMVV 108
Query: 90 SS-EQALEDFVDVIEYIQSSAEGEKDRALEGDYNLGRRYPVIAFGGSYGGMLASWLRMKY 148
S + D + ++ +Q G PV G S GG +A +
Sbjct: 109 SDFHVFVRDVLQHVDSMQKDYPGL---------------PVFLLGHSMGGAIAILTAAER 153
Query: 149 PHIVQGALAASAPIWAFPNMAP 170
P G + S + A P A
Sbjct: 154 PGHFAGMVLISPLVLANPESAT 175
>3pe6_A Monoglyceride lipase; alpha-beta hydrolase fold,
2-arachidonyl-glycerol, M associated, hydrolase,
hydrolase-hydrolase inhibitor comple; HET: ZYH; 1.35A
{Homo sapiens} PDB: 3jw8_A 3jwe_A*
Length = 303
Score = 44.6 bits (106), Expect = 3e-05
Identities = 29/142 (20%), Positives = 40/142 (28%), Gaps = 41/142 (28%)
Query: 51 WESAKRFKALIV----FSEH--RYYGDSLPFGNK---------SFD------SVSTRGYL 89
W KALI EH RY + D S R +
Sbjct: 35 WAPTGTPKALIFVSHGAGEHSGRYE----ELARMLMGLDLLVFAHDHVGHGQSEGERMVV 90
Query: 90 SS-EQALEDFVDVIEYIQSSAEGEKDRALEGDYNLGRRYPVIAFGGSYGGMLASWLRMKY 148
S + D + ++ +Q G PV G S GG +A +
Sbjct: 91 SDFHVFVRDVLQHVDSMQKDYPGL---------------PVFLLGHSMGGAIAILTAAER 135
Query: 149 PHIVQGALAASAPIWAFPNMAP 170
P G + S + A P A
Sbjct: 136 PGHFAGMVLISPLVLANPESAT 157
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.5 bits (104), Expect = 8e-05
Identities = 70/488 (14%), Positives = 130/488 (26%), Gaps = 160/488 (32%)
Query: 64 SEHRY-YGDSLP-----FGNKSFD----SVSTRGYLSSEQALEDFVDVIEYIQSSAEGEK 113
EH+Y Y D L F +FD + LS E+ +D I I S
Sbjct: 12 GEHQYQYKDILSVFEDAF-VDNFDCKDVQDMPKSILSKEE-----IDHI--IMSKDAVSG 63
Query: 114 DRALEGDYNLGRRYP---VIAFGGSYGGMLASWLRMKYPHIVQGALAASAPIWAFPNMAP 170
L + V F + LR+ Y ++ P
Sbjct: 64 TLRL---FWTLLSKQEEMVQKF-------VEEVLRINYKFLMSP--------IKTEQRQP 105
Query: 171 CNFYSKTVTEVFK--NASQ----------NCHDSIKASWKLIDDVTKDNL--------GK 210
+ + + N +Q + ++ L++ N+ GK
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ--ALLELRPAKNVLIDGVLGSGK 163
Query: 211 QWLTDNWKLCTPLETTDD---VQKFKG---WIGDIYSTLAMVNYPYPNSFLRPVPGYPIK 264
W+ L+ K W+ L N P + L ++
Sbjct: 164 TWVA--------LDVCLSYKVQCKMDFKIFWL-----NLK--NCNSPETVLE-----MLQ 203
Query: 265 KFCAALDSSTQSNVLLKLFEASQVYLNYTQDAQCFKWDSGSSIDELGLTGWYFQTCTEMV 324
K +D + S + S Q + + L L ++ C +V
Sbjct: 204 KLLYQIDPNWTSRS-----DHSSNIKLRIHSIQ-------AELRRL-LKSKPYENCL-LV 249
Query: 325 MPFCSKDN--DMFEPYPWSFDGFRAECEKTFQVSPNPNIAEKLYGGLRIEAASNIIFSNG 382
+ N + +++ F C K + + + L + + S
Sbjct: 250 L-----LNVQN-----AKAWNAFNLSC-KILLTTRFKQVTDFLSAATTTHISLD-HHSMT 297
Query: 383 LLDPWSH---AGVLHNISS--------------SVVAVVIPEGAHHLD-LRAANKDDPES 424
L L S++A I +G D + N D +
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 425 VIQA----------RKYYER--TFRK------------WINEFEISEQRNREEFKRYKM- 459
+I++ RK ++R F W + + + +Y +
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Query: 460 --RGNEDT 465
+ E T
Sbjct: 418 EKQPKEST 425
Score = 42.1 bits (98), Expect = 4e-04
Identities = 44/370 (11%), Positives = 98/370 (26%), Gaps = 112/370 (30%)
Query: 78 KSFDS-----VSTRGYLSSEQALEDFVDVIEYIQSSAEGEKDRALEGDYNLGRRYPVIAF 132
+F+ ++TR + + DF+ S + L D
Sbjct: 260 NAFNLSCKILLTTR-----FKQVTDFLSAATTTHISLD-HHSMTLTPDEVKS-------- 305
Query: 133 GGSYGGMLASWLRMKY---PH-IVQGALAASAPIWAFPNMAPC--NFYSKTVTEVFKNAS 186
+L +L + P ++ + I + + +
Sbjct: 306 ------LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTII 359
Query: 187 QNCHDSIKAS------WKLI---DDVTKDNLGKQWLTDNWKLCTPLETTDDVQKF----- 232
++ + ++ + +L ++ L+ W + V K
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSA---HIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416
Query: 233 -KGW-------IGDIYSTL------------AMVN-YP----YPNSFLRPVP--GYPIKK 265
+ I IY L ++V+ Y + + L P Y
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY-FYS 475
Query: 266 FCAA-LDSSTQSNVLLKLFEASQVYLNYTQDAQCFKW-------------DSGSSIDELG 311
L + + LF V+L+ F++ SGS ++ L
Sbjct: 476 HIGHHLKNIEHPE-RMTLF--RMVFLD-------FRFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 312 LTGWYFQTCTEMVMPFCSKDNDMFEPYPWSFDGFRAECEKTFQVSPNPNIAEKL----YG 367
+Y P+ ++ +E + F + E+ S ++
Sbjct: 526 QLKFY--------KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDE 577
Query: 368 GLRIEAASNI 377
+ EA +
Sbjct: 578 AIFEEAHKQV 587
Score = 36.0 bits (82), Expect = 0.032
Identities = 32/203 (15%), Positives = 60/203 (29%), Gaps = 46/203 (22%)
Query: 321 TEMVMPFCSKDNDMFEP-YPWSFDGFRAEC------EKTF--QVSPNPNIAEKL--YGGL 369
EMV F ++ Y + + E + + Q N + Y
Sbjct: 76 EEMVQKFV---EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 370 RIEAASNIIFSNGLLDPWSHAGV-LHNIS----SSVVAVVI---------PEGAHHLDLR 415
R++ + LL+ V + + + V V L+L+
Sbjct: 133 RLQPYLKLR--QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190
Query: 416 AANKDDPESVI-QARKYYERTFRKWINEFEISEQRNREEFKRYKMRGNEDTNDIWRYLQG 474
N + PE+V+ +K + W + + S K+R R L
Sbjct: 191 --NCNSPETVLEMLQKLLYQIDPNWTSRSDHSS--------NIKLR-IHSIQAELRRLLK 239
Query: 475 TRMVKEKLT----VPTKEIGKAF 493
++ + L V + AF
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAF 262
Score = 30.6 bits (68), Expect = 1.6
Identities = 31/165 (18%), Positives = 50/165 (30%), Gaps = 51/165 (30%)
Query: 1 VDQFTYTSNQTFQLKYL---YNDKYWDKKNGPIFFYCG----NEGAVEVFTENTGFLWES 53
VD Y +TF L Y D+Y+ + + G N E T
Sbjct: 450 VDH--YNIPKTFDSDDLIPPYLDQYF-------YSHIGHHLKNIEHPERMTL-------- 492
Query: 54 AKRFKALIVFSEHRYYGDSLPF-GNK-SFDSVSTRGYLSSEQALEDFVDVIEYIQSSAEG 111
F+ + + D F K DS + S L+ YI + +
Sbjct: 493 ---FRMV--------FLD-FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN-DP 539
Query: 112 EKDRALEGDYNLGRRYPVIAFGGSYGGMLASWLRMKYPHIVQGAL 156
+ +R L + F L + KY +++ AL
Sbjct: 540 KYER-LVNAI--------LDFLPKIEENL---ICSKYTDLLRIAL 572
Score = 27.9 bits (61), Expect = 9.6
Identities = 46/306 (15%), Positives = 86/306 (28%), Gaps = 91/306 (29%)
Query: 21 KYW-----DKKNGPIFFYCGNEGAVEVFTENTGFLWESAKRFKALIVFSEH--------- 66
W DK I E ++ V E K F L VF
Sbjct: 345 DNWKHVNCDKLTTII------ESSLNVLEPA-----EYRKMFDRLSVFPPSAHIPTILLS 393
Query: 67 RYYGDSLPFGNKSFDSVSTRGYLSSEQALEDFV---DVIEYIQSSAEGEKDRALE----G 119
+ D + + + L +Q E + + Y++ + E + AL
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI--YLELKVKLENEYALHRSIVD 451
Query: 120 DYNLGRRYPVIAFGGSYGGMLASWLRM-KYPHIVQGALAASAPIWAFPNMAPCNFYSKTV 178
YN+ + + ++ +L Y HI ++ +
Sbjct: 452 HYNIPKTFD-------SDDLIPPYLDQYFYSHIGH-------------HLKNIEHPER-- 489
Query: 179 TEVFKNASQNCHDSIKASWKLIDDVTKDNLGKQWLTDNWKLCTP-LETTDDVQKFKGWIG 237
+F+ + ++ K+ D T W L T ++ +K +I
Sbjct: 490 MTLFRMVFLD-FRFLEQ--KIRHDST-----------AWNASGSILNTLQQLKFYKPYIC 535
Query: 238 DIYSTLAMVNYPYPNSFLRPVPGYPIKKF---CAA-LDSSTQSNVL-LKLF-EASQVYLN 291
D N P + I F L S +++L + L E ++
Sbjct: 536 D--------NDPKYERLVN-----AILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582
Query: 292 YTQDAQ 297
+ Q
Sbjct: 583 AHKQVQ 588
>3ksr_A Putative serine hydrolase; catalytic triad, structural genomics,
JOIN for structural genomics, JCSG; 2.69A {Xanthomonas
campestris PV}
Length = 290
Score = 35.2 bits (81), Expect = 0.036
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 16/77 (20%)
Query: 85 TRGYLSSEQALEDFVDVIEYIQSSAEGEKDRALEGDYNLGRRYPVIAFGGSYGGMLASWL 144
R ++ Q L+D + + S + + G SYGG L++ L
Sbjct: 72 MRQSVTRAQNLDDIKAAYDQLASLPYVDAHS-------------IAVVGLSYGGYLSALL 118
Query: 145 RMKYPHIVQGALAASAP 161
+ P LA +P
Sbjct: 119 TRERP---VEWLALRSP 132
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.7 bits (79), Expect = 0.037
Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 18/81 (22%)
Query: 419 KDDPESVIQARKYYERTFRKWINEF--EISEQRNREEFKRYKMR--GNEDTNDIWRYLQG 474
+PES+ RKW E + E + + R +D + W Q
Sbjct: 81 TQEPESI-----------RKWREEQRKRLQELDAASKVMEQEWREKAKKDLEE-WNQRQS 128
Query: 475 TRMVKEKLTVPTKEIGKAFSA 495
++ K K+ + KAF
Sbjct: 129 EQVEKNKIN--NRIADKAFYQ 147
Score = 30.9 bits (69), Expect = 0.62
Identities = 10/50 (20%), Positives = 22/50 (44%)
Query: 416 AANKDDPESVIQARKYYERTFRKWINEFEISEQRNREEFKRYKMRGNEDT 465
A+ + E +A+K E ++ + E ++ NR K + + + D
Sbjct: 104 ASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADI 153
>3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad,
rotation; 1.60A {Lactobacillus rhamnosus} PDB: 3dlt_A
3dyi_A 3dyv_A 3e1g_A
Length = 251
Score = 34.9 bits (80), Expect = 0.043
Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
Query: 103 EYIQSSAEGEKDRALEGDYNLGRRY-PVIAFGGSYGGMLASWLRMKYPHIVQGALAASAP 161
+ + + + ++ +Y V FG S GG+ A P I G + +S
Sbjct: 68 ILTKGNPDIWWAESSAAVAHMTAKYAKVFVFGLSLGGIFAMKALETLPGITAGGVFSSPI 127
Query: 162 IWAFPNMAP 170
+ ++ P
Sbjct: 128 LPGKHHLVP 136
>3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold
seven-stranded beta-sandwich, structural genomics,
structural genomics consortium, SGC; 2.40A {Homo
sapiens}
Length = 422
Score = 34.8 bits (79), Expect = 0.057
Identities = 7/68 (10%), Positives = 18/68 (26%), Gaps = 13/68 (19%)
Query: 91 SEQALEDFVDVIEYIQSSAEGEKDRALEGDYNLGRRYPVIAFGGSYGGMLASWLRMKYPH 150
+LE F + + Y+ + + + G S G + + +
Sbjct: 202 DNISLEYFEEAVCYMLQHPQVKGPG-------------IGLLGISLGADICLSMASFLKN 248
Query: 151 IVQGALAA 158
+
Sbjct: 249 VSATVSIN 256
>3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase
fold, hydrolase; 1.20A {Bacillus SP}
Length = 270
Score = 34.0 bits (78), Expect = 0.093
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
Query: 128 PVIAFGGSYGGMLASWLRMKYPHIVQGALAASAPIWAFPNMAP 170
+ G S GG L +L +P I P +A
Sbjct: 110 TIFVTGLSMGGTLTLYLAEHHPDICGIVPI--NAAVDIPAIAA 150
>3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase,
hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F}
PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A*
Length = 267
Score = 33.8 bits (77), Expect = 0.10
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 18/70 (25%)
Query: 95 LEDFV-DVIEYIQSSAEGEKDRALEGDYNLGRRYPVIAFGGSYGGMLASWLRMKYPHIVQ 153
D++ ++E++ S E +I G + GG+ S +P +
Sbjct: 63 FSDYLSPLMEFMASLPANE---------------KIILVGHALGGLAISKAMETFPEKIS 107
Query: 154 GA--LAASAP 161
A L+ P
Sbjct: 108 VAVFLSGLMP 117
>3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga
maritima} PDB: 3doi_A
Length = 380
Score = 33.9 bits (77), Expect = 0.11
Identities = 14/88 (15%), Positives = 30/88 (34%), Gaps = 17/88 (19%)
Query: 90 SSEQALEDFVDVIEYIQSSAEGEKDRALEGDYNLGRRYPVIAFGGSYGGMLASWLRMKYP 149
+ E+ L + +I + +++R + G S GG M++P
Sbjct: 239 NPEKPLLAVIKIIRKLLDEYNIDENR-------------IYITGLSMGGYGTWTAIMEFP 285
Query: 150 HIVQGALAASAPIWAFPNMAPCNFYSKT 177
+ AA+ PI +++
Sbjct: 286 EL----FAAAIPICGGGDVSKVERIKDI 309
>3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta
hydrolase, alternative splicing, hydrolase,
mitochondrion, polymorphism, serine esterase; 2.10A
{Homo sapiens}
Length = 446
Score = 34.0 bits (77), Expect = 0.11
Identities = 13/68 (19%), Positives = 19/68 (27%), Gaps = 13/68 (19%)
Query: 91 SEQALEDFVDVIEYIQSSAEGEKDRALEGDYNLGRRYPVIAFGGSYGGMLASWLRMKYPH 150
LE F + + Y+ S E + V G S GG L +
Sbjct: 218 ETLHLEYFEEAMNYLLSHPEVKGPG-------------VGLLGISKGGELCLSMASFLKG 264
Query: 151 IVQGALAA 158
I +
Sbjct: 265 ITAAVVIN 272
>1gkl_A Endo-1,4-beta-xylanase Y; hydrolase, esterase family 1, inactive
mutant; HET: FER; 1.4A {Clostridium thermocellum} SCOP:
c.69.1.2 PDB: 1wb4_A* 1wb5_A* 1wb6_A* 1gkk_A*
Length = 297
Score = 33.5 bits (76), Expect = 0.14
Identities = 10/74 (13%), Positives = 23/74 (31%), Gaps = 3/74 (4%)
Query: 96 EDFV--DVIEYIQSSAEGEKDRALEGDYNLGRRYPVIAFGGSYGGMLASWLRMKYPHIVQ 153
+VI +++S + R + G + GG+ ++ + V
Sbjct: 126 YQEFRQNVIPFVESKYSTYAESTTPQGIAASRMHRGFG-GFAMGGLTTWYVMVNCLDYVA 184
Query: 154 GALAASAPIWAFPN 167
+ S W +
Sbjct: 185 YFMPLSGDYWYGNS 198
>3bdv_A Uncharacterized protein DUF1234; DUF1234 family protein,
alpha/beta-hydrolases fold, structur genomics; HET: MSE;
1.66A {Pectobacterium atrosepticum SCRI1043}
Length = 191
Score = 32.7 bits (74), Expect = 0.18
Identities = 12/61 (19%), Positives = 20/61 (32%)
Query: 128 PVIAFGGSYGGMLASWLRMKYPHIVQGALAASAPIWAFPNMAPCNFYSKTVTEVFKNASQ 187
PVI G S+G + A + + + G + + + S AS
Sbjct: 75 PVILIGHSFGALAACHVVQQGQEGIAGVMLVAPAEPMRFEIDDRIQASPLSVPTLTFASH 134
Query: 188 N 188
N
Sbjct: 135 N 135
>2yys_A Proline iminopeptidase-related protein; TTHA1809, structural
genomics, unknown function; 2.20A {Thermus thermophilus}
Length = 286
Score = 32.8 bits (75), Expect = 0.24
Identities = 3/23 (13%), Positives = 9/23 (39%)
Query: 132 FGGSYGGMLASWLRMKYPHIVQG 154
+G ++A + ++P
Sbjct: 100 LAHGFGAVVALEVLRRFPQAEGA 122
>3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration
switch protein, hydrolase ACTI lyase; 2.20A {Vibrio
vulnificus} PDB: 3our_A
Length = 415
Score = 32.7 bits (74), Expect = 0.25
Identities = 20/150 (13%), Positives = 38/150 (25%), Gaps = 30/150 (20%)
Query: 16 YLYNDKYWDKKNGPIFFYCGNEGAVEVFTENTGFLWESAKRFKALIVFSEHRYYGDSLPF 75
+L+ K P+ G + T+ + + ++ + G S
Sbjct: 183 HLH--LTNTDKPHPVVIVSA--GLDSLQTDMWRLFRDHLAKHDIAMLTVDMPSVGYS--- 235
Query: 76 GNKSFDSVSTRGYLSSEQALEDFVDVIEYIQSSAEGEKDRALEGDYNLGRRYPVIAFGGS 135
Y +E V+ + S + R V G
Sbjct: 236 ----------SKYPLTEDYSRLHQAVLNELFSIPYVDHHR-------------VGLIGFR 272
Query: 136 YGGMLASWLRMKYPHIVQGALAASAPIWAF 165
+GG L ++ + API
Sbjct: 273 FGGNAMVRLSFLEQEKIKACVILGAPIHDI 302
>3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron
aquisition, structural genomics, PSI-2, protein
structure initiative; HET: CIT; 1.80A {Shigella flexneri
2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A*
3c8h_A 3mga_A*
Length = 403
Score = 32.7 bits (74), Expect = 0.27
Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 13/85 (15%)
Query: 88 YLSSEQALEDFV--DVIEYIQSSAEGEKDRALEGDYNLGRRYPVIAFGGSYGGMLASWLR 145
L V +++ ++ A R V+A G S+GG+ A +
Sbjct: 246 ELPCNADFWLAVQQELLPLVKVIAPFSDRAD--------RT--VVA-GQSFGGLSALYAG 294
Query: 146 MKYPHIVQGALAASAPIWAFPNMAP 170
+ +P L+ S W
Sbjct: 295 LHWPERFGCVLSQSGSYWWPHRGGQ 319
>2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism, monoterpenoid
indole alkaloids, PNAE, hydrolase, serine esterase; HET:
CME; 2.10A {Rauvolfia serpentina} PDB: 2wfm_A 3gzj_A*
Length = 264
Score = 32.2 bits (73), Expect = 0.32
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 18/70 (25%)
Query: 95 LEDFV-DVIEYIQSSAEGEKDRALEGDYNLGRRYPVIAFGGSYGGMLASWLRMKYPHIVQ 153
D+ ++E + S E V+ G S+GGM YP +
Sbjct: 61 FRDYSEPLMEVMASIPPDE---------------KVVLLGHSFGGMSLGLAMETYPEKIS 105
Query: 154 GA--LAASAP 161
A ++A P
Sbjct: 106 VAVFMSAMMP 115
>3r0v_A Alpha/beta hydrolase fold protein; structural genomics,
PSI-biology, protein structure initiati alpha/beta
hydrolase; HET: MSE; 1.38A {Sphaerobacter thermophilus}
Length = 262
Score = 32.3 bits (74), Expect = 0.32
Identities = 21/108 (19%), Positives = 32/108 (29%), Gaps = 33/108 (30%)
Query: 54 AKRFKALIVFSEHRYYGDSLPFGNKSFDSVSTRGYLSSEQALEDFVDVIEYIQSSAEGEK 113
A F +I + + R GDS T Y + E+ +ED +I+
Sbjct: 47 APHFT-VICY-DRRGRGDSGD----------TPPY-AVEREIEDLAAIIDA--------- 84
Query: 114 DRALEGDYNLGRRYPVIAFGGSYGGMLASWLRMKYPHIVQGALAASAP 161
G FG S G L+ I + A+
Sbjct: 85 ---------AGG--AAFVFGMSSGAGLSLLAAASGLPITRLAVFEPPY 121
>3nwo_A PIP, proline iminopeptidase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, mycobac smegmatis; 1.90A {Mycobacterium
smegmatis}
Length = 330
Score = 32.4 bits (74), Expect = 0.34
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 132 FGGSYGGMLASWLRMKYPHIVQG-ALAASAP 161
G S+GGML + + ++ P + A+ S
Sbjct: 131 LGQSWGGMLGAEIAVRQPSGLVSLAICNSPA 161
>2qmq_A Protein NDRG2, protein NDR2; alpha/beta-hydrolases fold, NDR
family, developmental protei differentiation,
neurogenesis, phosphorylation; HET: 2PE; 1.70A {Mus
musculus} PDB: 2xmq_A 2xmr_A 2xms_A
Length = 286
Score = 31.7 bits (71), Expect = 0.46
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 1/35 (2%)
Query: 128 PVIAFGGSYGGMLASWLRMKYPHIVQG-ALAASAP 161
+I G G + S + +P V+G L P
Sbjct: 112 TIIGVGVGAGAYILSRYALNHPDTVEGLVLINIDP 146
>2y8t_A Apical membrane antigen, putative; membrane protein, moving
junction, invasion; HET: NAG; 1.95A {Toxoplasma gondii}
PDB: 2y8r_A* 2y8s_A* 2x2z_A*
Length = 432
Score = 31.8 bits (71), Expect = 0.51
Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 9/104 (8%)
Query: 247 NYPYPNSFLRPVP-GYPIKKFCAALDSSTQSNVLLKLFEASQVYLNYTQDAQCFKWDSGS 305
PY N+FL VP K+ L N + S ++ K +
Sbjct: 73 RPPYRNNFLEDVPTEKEYKQSGNPLPGGFNLNFVTP----SGQRISPFPMELLEKNSNIK 128
Query: 306 SIDELGLTGWYFQTCTEMVMPFCSKDNDMFEPYPWSFDGFRAEC 349
+ +LG + + V + + YP+ +D + C
Sbjct: 129 ASTDLGRCAEF---AFKTVAMDKNNKATKYR-YPFVYDSKKRLC 168
>2qjw_A Uncharacterized protein XCC1541; putative hydrolase of the
alpha/beta superfamily, structural genomics; HET: MSE
TLA P6G; 1.35A {Xanthomonas campestris PV}
Length = 176
Score = 31.1 bits (70), Expect = 0.54
Identities = 12/62 (19%), Positives = 22/62 (35%)
Query: 110 EGEKDRALEGDYNLGRRYPVIAFGGSYGGMLASWLRMKYPHIVQGALAASAPIWAFPNMA 169
G R LE + PV+ G S G +A+ + ++ P + + P +
Sbjct: 57 RGRLQRLLEIARAATEKGPVVLAGSSLGSYIAAQVSLQVPTRALFLMVPPTKMGPLPALD 116
Query: 170 PC 171
Sbjct: 117 AA 118
>3oos_A Alpha/beta hydrolase family protein; APC67239.0, protein structure
initiative, PSI-2, structural midwest center for
structural genomics, MCSG; HET: MSE PG4; 1.65A {Bacillus
anthracis}
Length = 278
Score = 31.5 bits (72), Expect = 0.55
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 132 FGGSYGGMLASWLRMKYPHIVQG-ALAASAPIWAFPNMAPCNFYSK 176
G S GGMLA + + + +A + + + SK
Sbjct: 96 AGHSAGGMLALVYATEAQESLTKIIVGGAAASKEYASHKDSIYCSK 141
>3dqz_A Alpha-hydroxynitrIle lyase-like protein; A/B-hydrloase fold,
cyanogenesis; 2.50A {Arabidopsis thaliana}
Length = 258
Score = 31.5 bits (71), Expect = 0.56
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 122 NLGRRYPVIAFGGSYGGMLASWLRMKYPHIVQGA--LAASAP 161
+L VI G S+GG+ + +P ++ L A P
Sbjct: 68 SLPENEEVILVGFSFGGINIALAADIFPAKIKVLVFLNAFLP 109
>2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct
initiative, midwest center for structural genomics,
MCSG, H; HET: MSE; 2.80A {Bacillus cereus} SCOP:
c.69.1.14
Length = 226
Score = 31.0 bits (70), Expect = 0.81
Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 10/93 (10%)
Query: 70 GDSLPFGNKSFDSVSTRGYLSSEQALEDFVDVIEYIQSSAEGEKDRALEGDYNLGRRYPV 129
G+ L G F G E + ++ E++ +Y R +
Sbjct: 72 GNVLENGMPRFFRRLAEGIFDEEDLIFRTKELNEFL---------DEAAKEYKFDRN-NI 121
Query: 130 IAFGGSYGGMLASWLRMKYPHIVQGALAASAPI 162
+A G S G +A+ L Y + ++GA+ +
Sbjct: 122 VAIGYSNGANIAASLLFHYENALKGAVLHHPMV 154
>3gff_A IROE-like serine hydrolase; NP_718593.1, structural genomics center
for structural genomics, JCSG, protein structure INI
PSI-2; 2.12A {Shewanella oneidensis}
Length = 331
Score = 31.1 bits (70), Expect = 0.81
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 123 LGRRYPV----IAFGGSYGGMLASWLRMKYPHIVQGALAASAPIW 163
+ + + G S+GG++A + LA +W
Sbjct: 129 IESQLRTNGINVLVGHSFGGLVAMEALRTDRPLFSAYLALDTSLW 173
>2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.92A {Anabaena variabilis}
Length = 223
Score = 30.6 bits (69), Expect = 0.87
Identities = 17/100 (17%), Positives = 29/100 (29%), Gaps = 17/100 (17%)
Query: 71 DSLPFGNKSFDSVSTRGYLSSEQALEDFVDVIEYIQSSAEGEKDRALEGDYNLGRRYPVI 130
D L + D + V +++ + + + + V
Sbjct: 71 DLLTQEEEEIDLRTRHLRFDIGLLASRLVGATDWLTHNPDTQHLK-------------VG 117
Query: 131 AFGGSYGGMLASWLRMKYPHIVQGALAASAPIWAFPNMAP 170
FG S GG A + P V A P++AP
Sbjct: 118 YFGASTGGGAALVAAAERPETV----QAVVSRGGRPDLAP 153
>1jjf_A Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-xylan; feruloyl
esterase, ferulic acid esterase, FAE_XYNZ, XYNZ,
structural genomics; 1.75A {Clostridium thermocellum}
SCOP: c.69.1.2 PDB: 1jt2_A*
Length = 268
Score = 30.9 bits (70), Expect = 0.92
Identities = 22/94 (23%), Positives = 33/94 (35%), Gaps = 14/94 (14%)
Query: 74 PFGNKSFDSVSTRGYLSSEQALEDFVDVIEYIQSSAEGEKDRALEGDYNLGRRYPVIAFG 133
P N + GY + + L + +I YI+S+ DR R IA G
Sbjct: 106 PNTNAAGPG-IADGYENFTKDLLN--SLIPYIESNYSVYTDRE--------HRA--IA-G 151
Query: 134 GSYGGMLASWLRMKYPHIVQGALAASAPIWAFPN 167
S GG + + + SA +PN
Sbjct: 152 LSMGGGQSFNIGLTNLDKFAYIGPISAAPNTYPN 185
>1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 1.60A {Thermus thermophilus} SCOP:
c.69.1.27
Length = 238
Score = 30.5 bits (68), Expect = 1.0
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 5/86 (5%)
Query: 86 RGYLSSEQALE--DFVDVIEYIQSSAEGEKDRALEGDYNLGRRY--PVIAFGGSYGGMLA 141
+ E +E + A G K+ A RR+ P+ GGS G +A
Sbjct: 60 PRHGEREGPPPSSKSPRYVEEVYRVALGFKEEARRVAEEAERRFGLPLFLAGGSLGAFVA 119
Query: 142 SWLRMKYPHIVQGA-LAASAPIWAFP 166
L + S P
Sbjct: 120 HLLLAEGFRPRGVLAFIGSGFPMKLP 145
>2r8b_A AGR_C_4453P, uncharacterized protein ATU2452; APC6088,
agrobacterium tumefaciens STR. C58 structural genomics,
PSI-2; 2.56A {Agrobacterium tumefaciens str} SCOP:
c.69.1.14
Length = 251
Score = 30.7 bits (69), Expect = 1.0
Identities = 13/86 (15%), Positives = 28/86 (32%), Gaps = 12/86 (13%)
Query: 74 PFGNKSFDSVSTRGYLSSEQALEDFVDVIEYIQSSAEGEKDRALEGDYNLGRRYPVIAFG 133
G F + G + ++I+++ E + PVI G
Sbjct: 100 EHGAARFFRRTGEGVYDMVDLERATGKMADFIKANREHYQAG------------PVIGLG 147
Query: 134 GSYGGMLASWLRMKYPHIVQGALAAS 159
S G + + + ++ P + A+
Sbjct: 148 FSNGANILANVLIEQPELFDAAVLMH 173
>2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural
genomics, PSI, structure initiative; 2.00A {Pseudomonas
aeruginosa}
Length = 367
Score = 30.8 bits (69), Expect = 1.0
Identities = 16/119 (13%), Positives = 32/119 (26%), Gaps = 29/119 (24%)
Query: 66 HRYYGDS--LPFGNKSFDSVSTRGYLSSEQALEDFVDVIEYIQSSAEGEKDRALEGDYNL 123
Y G+S P R S + EDF +++I E ++R
Sbjct: 132 PSYTGESGGQP-----------RNVASPDINTEDFSAAVDFISLLPEVNRER-------- 172
Query: 124 GRRYPVIAFGGSYGGMLASWLRMKYPHIVQGALAASAPIWAFPNMAPCNFYSKTVTEVF 182
+ G G +A + ++ ++ + + E
Sbjct: 173 -----IGVIGICGWGGMALNAVAVDKRV---KAVVTSTMYDMTRVMSKGYNDSVTLEQR 223
>4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A
4ao8_A
Length = 259
Score = 30.6 bits (68), Expect = 1.0
Identities = 16/102 (15%), Positives = 29/102 (28%), Gaps = 10/102 (9%)
Query: 86 RGYLSSEQALEDFVDVIEYIQSSAEGEKDRALEGDYNLGRRY--------PVIAFGGSYG 137
R + + + D V + + + EG A+ D+ + P +G S G
Sbjct: 99 RASVQAGREPTDVVGLDAFPRMWHEGGGTAAVIADWAAALDFIEAEEGPRPTGWWGLSMG 158
Query: 138 GMLASWLRMKYPHIVQGALAASAPIWAFPNMAPCNFYSKTVT 179
M+ + I N + VT
Sbjct: 159 TMMGLPVTASDKRI--KVALLGLMGVEGVNGEDLVRLAPQVT 198
>3c6x_A Hydroxynitrilase; atomic resolution, hydroxynitril lyase,
catalysis, protonation state, AB initio calculations,
substrate bindin; 1.05A {Hevea brasiliensis} SCOP:
c.69.1.20 PDB: 1sc9_A 1yas_A* 2g4l_A* 2yas_A 1qj4_A
3c6y_A 3c6z_A 3c70_A 3yas_A 4yas_A 5yas_A* 6yas_A
7yas_A* 1yb6_A* 1yb7_A 1sck_A 1sci_A 1scq_A 1dwo_A
1dwp_A ...
Length = 257
Score = 30.4 bits (68), Expect = 1.0
Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 18/70 (25%)
Query: 95 LEDFV-DVIEYIQSSAEGEKDRALEGDYNLGRRYPVIAFGGSYGGMLASWLRMKYPHIVQ 153
+++ ++ ++++ GE VI G S GG+ + KY +
Sbjct: 54 FDEYSEPLLTFLEALPPGE---------------KVILVGESCGGLNIAIAADKYCEKIA 98
Query: 154 GA--LAASAP 161
A + P
Sbjct: 99 AAVFHNSVLP 108
>1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics, PSI,
protei structure initiative; HET: MSE 3OH; 1.70A
{Escherichia coli} SCOP: c.69.1.26
Length = 258
Score = 30.3 bits (69), Expect = 1.1
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 135 SYGGMLASWLRMKYPHIVQG-ALAASAPIWAFPNMAP 170
S GG++AS + + +P V+ AS+P ++ + P
Sbjct: 82 SLGGLVASQIALTHPERVRALVTVASSPCFSARDEWP 118
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta
propeller, hydrolase, oligop SIZE selectivity; HET: GOL;
1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A*
1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Length = 582
Score = 30.9 bits (70), Expect = 1.2
Identities = 13/78 (16%), Positives = 21/78 (26%), Gaps = 16/78 (20%)
Query: 92 EQALEDFVDVIEYIQSSAEGEKDRALEGDYNLGRRYPVIAFGGSYGGMLASWLRMKYPHI 151
LED + + G + G SYGG + P +
Sbjct: 417 GGELEDVSAAARWAR--ESGLASE-------------LYIMGYSYGGYMTLCALTMKPGL 461
Query: 152 VQGALAASAPIWAFPNMA 169
+ A A + + M
Sbjct: 462 FKAG-VAGASVVDWEEMY 478
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog,
transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Length = 466
Score = 30.8 bits (70), Expect = 1.3
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 9/49 (18%)
Query: 123 LGRRYPVIAFGGSYGGMLASWLRMKYPH----IVQGA---LAAS--API 162
G P I GGS G M W + + I GA LA + AP+
Sbjct: 141 AGFEGPTIQMGGSIGQMTGGWFKATQENQRILIAVGAGAGLATAFNAPL 189
>3p8b_B Transcription antitermination protein NUSG; transcription
elongation factor, RNA polymerase, transferase
transcription complex; 1.80A {Pyrococcus furiosus} PDB:
3qqc_D
Length = 152
Score = 29.4 bits (66), Expect = 1.4
Identities = 10/56 (17%), Positives = 15/56 (26%), Gaps = 2/56 (3%)
Query: 441 NEFEISEQRNREEFKRYKMRGNEDTNDIWRYLQGTRMVK--EKLTVPTKEIGKAFS 494
I K Y + + ++G R + VP KEI
Sbjct: 29 YNLPIYAILAPSRVKGYIFVEAPNKGVVDEAIRGIRHARGVLPGEVPFKEIEHFLE 84
>1xkl_A SABP2, salicylic acid-binding protein 2; alpha-beta protein,
structural genomics, protein structure initiative, PSI;
HET: STH; 2.00A {Nicotiana tabacum} SCOP: c.69.1.20 PDB:
1y7i_A* 1y7h_A*
Length = 273
Score = 30.3 bits (68), Expect = 1.4
Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 18/70 (25%)
Query: 95 LEDFV-DVIEYIQSSAEGEKDRALEGDYNLGRRYPVIAFGGSYGGMLASWLRMKYPHIVQ 153
L D+ ++E ++S + E VI G S GGM KYP +
Sbjct: 55 LYDYTLPLMELMESLSADE---------------KVILVGHSLGGMNLGLAMEKYPQKIY 99
Query: 154 GA--LAASAP 161
A LAA P
Sbjct: 100 AAVFLAAFMP 109
>3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like
hydrolase, structural genomi center for structural
genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm
1728}
Length = 207
Score = 29.8 bits (67), Expect = 1.4
Identities = 12/51 (23%), Positives = 19/51 (37%)
Query: 128 PVIAFGGSYGGMLASWLRMKYPHIVQGALAASAPIWAFPNMAPCNFYSKTV 178
+ G S GG + ++YP IV G +A + KT+
Sbjct: 101 RSVIMGASMGGGMVIMTTLQYPDIVDGIIAVAPAWVESLKGDMKKIRQKTL 151
>1jmk_C SRFTE, surfactin synthetase; thioesterase, non-ribosomal peptide
synthesis, alpha-beta hydrolase, cyclic peptide; 1.71A
{Bacillus subtilis} SCOP: c.69.1.22
Length = 230
Score = 30.1 bits (68), Expect = 1.5
Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 18/56 (32%)
Query: 86 RGYLSSEQALEDFVDVIEYIQSSAEGEKDRALEGDYNLGRRYPVIAFGGSYGGMLA 141
++ E L+ + D+I+ +Q EG L G S G LA
Sbjct: 48 FDFIEEEDRLDRYADLIQKLQP----------EGPLTLF--------GYSAGCSLA 85
>2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase,
putative lipase; HET: CME CSO; 1.90A {Saccharomyces
cerevisiae} PDB: 2y6v_A*
Length = 398
Score = 30.5 bits (68), Expect = 1.5
Identities = 22/147 (14%), Positives = 42/147 (28%), Gaps = 26/147 (17%)
Query: 15 KYLYNDKYWDKKNG---PIFFYCGNEGAVEVFTENTGFLWESAKRFKAL---IVFSEHRY 68
Y ++ + + F G+ + V+ L + ++ +
Sbjct: 37 VYTSAERQRRSRTATRLNLVFLHGSGMSKVVWEYYLPRLVAADAEGNYAIDKVLLIDQVN 96
Query: 69 YGDSLPFGNKSFDSVSTRGYLSSEQALEDFV-DVIEYIQSSAEGEKDRALEGDYNLGRRY 127
+GDS +V RG L + D DV++ E
Sbjct: 97 HGDS---------AVRNRGRLGTNFNWIDGARDVLKIATC----------ELGSIDSHPA 137
Query: 128 PVIAFGGSYGGMLASWLRMKYPHIVQG 154
+ G S GG A + P++
Sbjct: 138 LNVVIGHSMGGFQALACDVLQPNLFHL 164
>3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2,
structural genomics, protein structure initiative,
midwest for structural genomics; 2.00A {Oenococcus oeni}
Length = 272
Score = 30.1 bits (68), Expect = 1.5
Identities = 9/39 (23%), Positives = 10/39 (25%), Gaps = 1/39 (2%)
Query: 133 GGSYGGMLASWLRMKYPHIVQG-ALAASAPIWAFPNMAP 170
G SYGG LA + G L
Sbjct: 95 GHSYGGYLAQAIAFHLKDQTLGVFLTCPVITADHSKRLT 133
>1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel,
FAB complex, membrane protein; 2.51A {Escherichia coli}
SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A
2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A
2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ...
Length = 465
Score = 30.4 bits (69), Expect = 1.6
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 10/50 (20%)
Query: 123 LGRRYPVIAFGGSYGGMLASWLRMKYPH-----IVQGA---LAAS--API 162
LGR P + GG+ G M+ R+K + GA LAA+ AP+
Sbjct: 145 LGREGPTVQIGGNIGRMVLDIFRLKGDEARHTLLATGAAAGLAAAFNAPL 194
>2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE PGE; 1.96A {Bacillus subtilis}
Length = 306
Score = 29.6 bits (67), Expect = 2.2
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 133 GGSYGGMLASWLRMKYPHIVQG-ALAASAPIWA 164
G S GG+ ++ P V+ A+ + A +
Sbjct: 140 GLSLGGLHTMNFLLRMPERVKSAAILSPAETFL 172
>2gru_A 2-deoxy-scyllo-inosose synthase; aminoglycoside,
2-deoxystreptamine, dehydroquinate synthase, lyase; HET:
NAD EXO CAK; 2.15A {Bacillus circulans} PDB: 2d2x_A*
Length = 368
Score = 29.6 bits (67), Expect = 2.7
Identities = 13/117 (11%), Positives = 25/117 (21%), Gaps = 36/117 (30%)
Query: 45 ENTGFLWESAKRFKALIVFSEH--RYYGDSLPFGNKSFDSVSTRGYLSSEQALEDFVDVI 102
E+ + + +++ + V
Sbjct: 23 ESVESYIPRDEFDQYIMISDSGVPDSIVHYA------------------AEYFGKLAPVH 64
Query: 103 EYIQSSAEGEK---------DRALEGDYNLGRRYPVIAFGGSYGGML-----ASWLR 145
E K +RA+ RR ++A GG G + R
Sbjct: 65 ILRFQGGEEYKTLSTVTNLQERAIA--LGANRRTAIVAVGGGLTGNVAGVAAGMMFR 119
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural
protein, actin-crosslinking, myogenesis, cytoskeleton;
1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A
Length = 245
Score = 29.2 bits (65), Expect = 2.7
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 408 GAHHLDLRAANKDDPESVIQARKYYERTFRKWINE 442
+ + +D P IQ + TF +W NE
Sbjct: 2 AMAPVTEKDLAEDAPWKKIQ-----QNTFTRWCNE 31
>2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A*
Length = 251
Score = 29.2 bits (66), Expect = 2.9
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 16/75 (21%)
Query: 95 LEDFVDVIEYIQSSAEGEKDRALEGDYNLGRRYPVIAFGGSYGGMLASWLRMKYPHIVQG 154
L + + V++Y + + G S GG+ I++
Sbjct: 83 LTNILAVVDYAKK--LDFVT-------------DIYMAGHSQGGLSVMLAAAMERDIIKA 127
Query: 155 ALAASAPIWAFPNMA 169
L +P P +A
Sbjct: 128 -LIPLSPAAMIPEIA 141
>3hoc_A Filamin-A; calponin homology domain, actin binding domain,
acetylation, actin-binding, alternative splicing,
cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB:
3hop_A 3hor_A 2wfn_A
Length = 272
Score = 29.2 bits (65), Expect = 3.0
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 5/28 (17%)
Query: 415 RAANKDDPESVIQARKYYERTFRKWINE 442
+ +D P IQ + TF +W NE
Sbjct: 36 KDLAEDAPWKKIQ-----QNTFTRWCNE 58
>1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1
interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23
Length = 210
Score = 28.7 bits (64), Expect = 3.6
Identities = 21/141 (14%), Positives = 34/141 (24%), Gaps = 37/141 (26%)
Query: 48 GFLWESAKRFKALIVFSEHRY---------YGDSLPFGNKSFDSVSTRGYLSSEQALEDF 98
F E+ + L ++ Y G S K + + G L+ L
Sbjct: 42 RFSSETWQNLGTLHRLAQAGYRAVAIDLPGLGHS-----KEAAAPAPIGELAPGSFLAAV 96
Query: 99 VDVIEYIQSSAEGEKDRALEGDYNLGRRYPVIAFGGSYGGMLASWLRMKYPHIVQGA-LA 157
VD ALE P + S GM + + G
Sbjct: 97 VD---------------ALELG-------PPVVISPSLSGMYSLPFLTAPGSQLPGFVPV 134
Query: 158 ASAPIWAFPNMAPCNFYSKTV 178
A + + +
Sbjct: 135 APICTDKINAANYASVKTPAL 155
>3u0v_A Lysophospholipase-like protein 1; alpha, beta hydrolase fold,
hydrolase; 1.72A {Homo sapiens}
Length = 239
Score = 28.6 bits (64), Expect = 3.6
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 7/70 (10%)
Query: 90 SSEQALEDFVDVIEYIQSSAEGEKDRALEGDYNLGRRYPVIAFGGSYGGMLASWLRMKYP 149
+ LE + + + + E ++ + ++ G S GG +A L +
Sbjct: 88 DCPEHLESIDVMCQVLTDLIDEEVKSGIKKN-------RILIGGFSMGGCMAMHLAYRNH 140
Query: 150 HIVQGALAAS 159
V G A S
Sbjct: 141 QDVAGVFALS 150
>3om8_A Probable hydrolase; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG;
HET: MES; 2.25A {Pseudomonas aeruginosa}
Length = 266
Score = 28.7 bits (65), Expect = 4.2
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 131 AFGG-SYGGMLASWLRMKYPHIVQG-ALAASAP 161
F G S GG++ WL + P ++ LA ++
Sbjct: 96 HFLGLSLGGIVGQWLALHAPQRIERLVLANTSA 128
>3hss_A Putative bromoperoxidase; alpha beta hydrolase, oxidoreductase,
hydrolase; 1.90A {Mycobacterium tuberculosis} PDB:
3e3a_A 3hys_A 3hzo_A
Length = 293
Score = 28.9 bits (65), Expect = 4.3
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 128 PVIAFGGSYGGMLASWLRMKYPHIVQGA-LAASAP 161
P G S G +A L + P +V A L A+
Sbjct: 111 PARVVGVSMGAFIAQELMVVAPELVSSAVLMATRG 145
>1iup_A META-cleavage product hydrolase; aromatic compounds, cumene,
isopropylbenzene, META-cleavage compound hydrolase;
1.60A {Pseudomonas fluorescens} SCOP: c.69.1.10 PDB:
1iun_A 1iuo_A 1uk6_A 1uk7_A 1uk8_A 1uk9_A 1uka_A 1ukb_A
2d0d_A
Length = 282
Score = 28.5 bits (64), Expect = 5.0
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 133 GGSYGGMLASWLRMKYPHIVQG-ALAASAPIWAFPN 167
G ++GG LA ++Y V L +A
Sbjct: 101 GNAFGGGLAIATALRYSERVDRMVLMGAAGTRFDVT 136
>3h2g_A Esterase; xanthomonas oryzae PV. oryzae, cell WALL degrading
enzyme, RICE, virulence, innate immune responses,
pathogenesis; 1.86A {Xanthomonas oryzae PV} PDB: 3h2j_A
3h2k_A* 3h2h_A 3h2i_A
Length = 397
Score = 28.8 bits (63), Expect = 5.1
Identities = 11/82 (13%), Positives = 23/82 (28%), Gaps = 1/82 (1%)
Query: 86 RGYLSSEQALEDFVDVIEYIQSSAEGEKD-RALEGDYNLGRRYPVIAFGGSYGGMLASWL 144
G S A ++ ++ + + R++ V+ G S GG A
Sbjct: 126 LGLGKSNYAYHPYLHSASEASATIDAMRAARSVLQHLKTPLSGKVMLSGYSQGGHTAMAT 185
Query: 145 RMKYPHIVQGALAASAPIWAFP 166
+ + + A
Sbjct: 186 QREIEAHLSKEFHLVASAPISG 207
>1lns_A X-prolyl dipeptidyl aminopetidase; alpha beta hydrolase fold; 2.20A
{Lactococcus lactis} SCOP: a.40.2.1 b.18.1.13 c.69.1.21
Length = 763
Score = 28.6 bits (63), Expect = 5.9
Identities = 14/88 (15%), Positives = 25/88 (28%), Gaps = 16/88 (18%)
Query: 91 SEQALEDFVDVIEYIQSSAEGEKDR----ALEGDYNLGRRYPVIAFGGSYGGMLASWLRM 146
Q + VI+++ A R ++ + G+ V G SY G +A
Sbjct: 303 DYQQIYSMTAVIDWLNGRARAYTSRKKTHEIKASWANGK---VAMTGKSYLGTMAYGAAT 359
Query: 147 KYPHIVQGALAASAPIWAFPNMAPCNFY 174
L ++Y
Sbjct: 360 TGV----EGLEL-----ILAEAGISSWY 378
>3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase,
cinnamoyl/Fe esterase, hydroxycinammates, extracellular;
HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A*
3pfc_A* 3s2z_A* 3pf8_A 3qm1_A*
Length = 270
Score = 28.2 bits (63), Expect = 6.2
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 16/68 (23%)
Query: 95 LEDFVDVIEYIQSSAEGEKDRALEGDYNLGRRYPVIAFGGSYGGMLASWLRMKYPHIVQG 154
+ED ++ Y+++ + G + GG++AS L YP +++
Sbjct: 102 IEDANAILNYVKTDPHVR---------------NIYLVGHAQGGVVASMLAGLYPDLIKK 146
Query: 155 A-LAASAP 161
L A A
Sbjct: 147 VVLLAPAA 154
>2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase;
alpha/beta hydrolase, META-cleavage pathway; 2.1A
{Arthrobacter nicotinovorans} SCOP: c.69.1.41
Length = 386
Score = 28.0 bits (62), Expect = 6.9
Identities = 7/38 (18%), Positives = 10/38 (26%), Gaps = 2/38 (5%)
Query: 128 PVIAFGGSYGGMLASWLRMKYPHIVQGALAASAPIWAF 165
+ G S GG A P + A +
Sbjct: 224 AIGVLGRSLGGNYALKSAACEPRLA--ACISWGGFSDL 259
>2xua_A PCAD, 3-oxoadipate ENOL-lactonase; hydrolase, catechol metabolism;
1.90A {Burkholderia xenovorans}
Length = 266
Score = 28.0 bits (63), Expect = 7.1
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 131 AFGG-SYGGMLASWLRMKYPHIVQG-ALAASAP 161
F G S GG+ L ++ ++ AL +A
Sbjct: 95 NFCGLSMGGLTGVALAARHADRIERVALCNTAA 127
>1c4x_A BPHD, protein (2-hydroxy-6-OXO-6-phenylhexa-2,4-dienoat hydrolase);
PCB degradation; 2.40A {Rhodococcus SP} SCOP: c.69.1.10
Length = 285
Score = 28.0 bits (63), Expect = 7.2
Identities = 8/36 (22%), Positives = 11/36 (30%), Gaps = 1/36 (2%)
Query: 135 SYGGMLASWLRMKYPHIVQG-ALAASAPIWAFPNMA 169
S GG + L ++ P AL S
Sbjct: 111 SMGGAVTLQLVVEAPERFDKVALMGSVGAPMNARPP 146
>2g1p_A DNA adenine methylase; DAM methylation, GATC recognition, base
flipping, bacterial factor, transferase-DNA complex;
HET: DNA SAH; 1.89A {Escherichia coli} PDB: 2ore_D*
Length = 278
Score = 28.1 bits (63), Expect = 7.4
Identities = 6/53 (11%), Positives = 16/53 (30%), Gaps = 11/53 (20%)
Query: 419 KDDPESVIQARKYYERTFRKWINEFEISEQRNREEFKRYKMRGNEDTNDIWRY 471
K + + + E + E E + +++ N+ + R
Sbjct: 67 KMRTDEYV-----------QAARELFVPETNCAEVYYQFREEFNKSQDPFRRA 108
>4f0j_A Probable hydrolytic enzyme; alpha/beta hydrolase fold, structural
genomics, joint center structural genomics, JCSG; HET:
MSE; 1.50A {Pseudomonas aeruginosa}
Length = 315
Score = 27.9 bits (62), Expect = 7.7
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 133 GGSYGGMLASWLRMKYPHIVQG-ALAASAPIWAFP 166
G S GGMLA+ + YP V+ L + +
Sbjct: 120 GHSMGGMLATRYALLYPRQVERLVLVNPIGLEDWK 154
>2ocg_A Valacyclovir hydrolase; alpha beta hydrolase fold; 1.75A {Homo
sapiens} PDB: 2oci_A* 2ock_A 2ocl_A
Length = 254
Score = 27.6 bits (62), Expect = 8.3
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 133 GGSYGGMLASWLRMKYPHIVQG-ALAASAP 161
G S GG+ A KYP + + +
Sbjct: 100 GWSDGGITALIAAAKYPSYIHKMVIWGANA 129
>1mtz_A Proline iminopeptidase; alpha-beta hydrolase, CAP domain, caged
active site, prolyl peptidase; 1.80A {Thermoplasma
acidophilum} SCOP: c.69.1.7 PDB: 1mt3_A 1mu0_A* 1xrr_A
1xrq_A 1xro_A 1xrn_A 1xrm_A 1xrp_A 1xrl_A* 1xqw_A*
1xqx_A* 1xqy_A 1xqv_A
Length = 293
Score = 27.9 bits (63), Expect = 8.4
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 132 FGGSYGGMLA 141
G SYGG LA
Sbjct: 102 MGSSYGGALA 111
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces
morookaensis} PDB: 3azp_A 3azq_A
Length = 662
Score = 27.9 bits (62), Expect = 9.1
Identities = 12/75 (16%), Positives = 21/75 (28%), Gaps = 15/75 (20%)
Query: 95 LEDFVDVIEYIQSSAEGEKDRALEGDYNLGRRYPVIAFGGSYGGMLASWLRMKYPHIVQG 154
+ED V + ++ R + GGS GG A+ + +
Sbjct: 484 VEDCAAVATALAEEGTADRAR-------------LAVRGGSAGGWTAASS-LVSTDVYAC 529
Query: 155 ALAASAPIWAFPNMA 169
P+ A
Sbjct: 530 G-TVLYPVLDLLGWA 543
>2vat_A Acetyl-COA--deacetylcephalosporin C acetyltransferase; A/B-
hydrolase fold, acyltransferase, acetyl coenzyme A,
antibiotic biosynthesis; HET: COA; 2.2A {Acremonium
chrysogenum} SCOP: c.69.1.40 PDB: 2vav_A* 2vax_A*
Length = 444
Score = 27.7 bits (62), Expect = 9.5
Identities = 10/31 (32%), Positives = 12/31 (38%), Gaps = 4/31 (12%)
Query: 133 GGSYGGMLA-SWLRMKYPHIVQGA--LAASA 160
G S GGM W P V+ +A S
Sbjct: 206 GASMGGMHTLEWAFF-GPEYVRKIVPIATSC 235
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.422
Gapped
Lambda K H
0.267 0.0636 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,872,036
Number of extensions: 471445
Number of successful extensions: 1055
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1036
Number of HSP's successfully gapped: 86
Length of query: 499
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 401
Effective length of database: 3,965,535
Effective search space: 1590179535
Effective search space used: 1590179535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.7 bits)