RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10890
(499 letters)
>d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase
PepX, middle domain {Lactococcus lactis [TaxId: 1358]}
Length = 405
Score = 33.4 bits (75), Expect = 0.055
Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 9/90 (10%)
Query: 82 SVSTRGYLSSE--------QALEDFVDVIEYIQSSAEGEKDRALEGDYNL-GRRYPVIAF 132
V+ G SS+ Q + VI+++ A R + V
Sbjct: 141 YVAGVGTRSSDGFQTSGDYQQIYSMTAVIDWLNGRARAYTSRKKTHEIKASWANGKVAMT 200
Query: 133 GGSYGGMLASWLRMKYPHIVQGALAASAPI 162
G SY G +A ++ LA +
Sbjct: 201 GKSYLGTMAYGAATTGVEGLELILAEAGIS 230
>d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase
{Penicillium funiculosum [TaxId: 28572]}
Length = 318
Score = 32.3 bits (73), Expect = 0.13
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 129 VIAFGGSYGGMLASWLRMKYPHIVQGALA--ASAPIWAFPNMAP 170
V G + GG +A+ L + Y + A P N
Sbjct: 13 VSVSGLASGGYMAAQLGVAYSDVFNVGFGVFAGGPYDCARNQYY 56
>d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida
antarctica), form b [TaxId: 34362]}
Length = 317
Score = 31.6 bits (71), Expect = 0.21
Identities = 14/92 (15%), Positives = 27/92 (29%), Gaps = 18/92 (19%)
Query: 86 RGYLSSEQALEDFVDVIEYIQSSAEGEKDRALEGDYNLGRRYPVIAFGGSYGGMLASWLR 145
++ E V+ I + + + K + S GG++A W
Sbjct: 71 FMLNDTQVNTEYMVNAITALYAGSGNNK---------------LPVLTWSQGGLVAQWGL 115
Query: 146 MKYPHI---VQGALAASAPIWAFPNMAPCNFY 174
+P I V +A + P +
Sbjct: 116 TFFPSIRSKVDRLMAFAPDYKGTVLAGPLDAL 147
>d2aj6a1 d.108.1.1 (A:1-118) Hypothetical protein MW0638
{Staphylococcus aureus [TaxId: 1280]}
Length = 118
Score = 28.7 bits (63), Expect = 0.67
Identities = 10/80 (12%), Positives = 28/80 (35%)
Query: 414 LRAANKDDPESVIQARKYYERTFRKWINEFEISEQRNREEFKRYKMRGNEDTNDIWRYLQ 473
+R NKD+ + Q +E + + ++ ++ ++ R + I+ Y
Sbjct: 1 MRTLNKDEHNYIKQIANIHETLLSQVESNYKCTKLSIALRYEMICSRLEHTNDKIYIYEN 60
Query: 474 GTRMVKEKLTVPTKEIGKAF 493
+++ + E
Sbjct: 61 EGQLIAFIWGHFSNEKSMVN 80
>d1ex9a_ c.69.1.18 (A:) Lipase {Pseudomonas aeruginosa [TaxId: 287]}
Length = 285
Score = 29.4 bits (65), Expect = 0.99
Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 15/76 (19%)
Query: 86 RGYLSSEQALEDFVDVIEYIQSSAEGEKDRALEGDYNLGRRYPVIAFGGSYGGMLASWLR 145
+SE E + +E I + + V G S+GG ++
Sbjct: 48 SQLDTSEVRGEQLLQQVEEIVALSGQP---------------KVNLIGHSHGGPTIRYVA 92
Query: 146 MKYPHIVQGALAASAP 161
P ++ A + AP
Sbjct: 93 AVRPDLIASATSVGAP 108
>d1bxta1 b.40.2.2 (A:1-119) Streptococcal superantigen SSA
{Streptococcus pyogenes [TaxId: 1314]}
Length = 119
Score = 27.9 bits (62), Expect = 1.3
Identities = 13/56 (23%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Query: 212 WLTDNWKLCTPLETTDDVQKFKGWIGDIYSTLAMVNYPYPNSFLRPVPGYPIKKFC 267
L + + T + D K+K DI+ NY Y + KK C
Sbjct: 57 KLKNYDSVKTEFNSKDLATKYKNKDVDIFG----SNYYYNCYYSEGNSCKNAKKTC 108
>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 291
Score = 29.1 bits (64), Expect = 1.3
Identities = 9/67 (13%), Positives = 22/67 (32%), Gaps = 7/67 (10%)
Query: 405 IPEGAHHLDLRAANKDDPESVIQARKYYERTFRKWINEFEISEQRNREEFKRYKMRGNED 464
+P + + E + Y T W + + +++E ++
Sbjct: 209 LPRISQVDYYSSNAGWKVERYHRIGANYVPTLNAWADALQ----AHKDEAIA---LKGQE 261
Query: 465 TNDIWRY 471
T DI+ +
Sbjct: 262 TCDIYMH 268
>d3b5ea1 c.69.1.14 (A:7-215) Uncharacterized protein Mll8374
{Mesorhizobium loti [TaxId: 381]}
Length = 209
Score = 28.5 bits (62), Expect = 1.4
Identities = 22/162 (13%), Positives = 35/162 (21%), Gaps = 20/162 (12%)
Query: 14 LKYLYNDKYWDKKNGP-IFFYCGNEGAVEVFTENTGFLWESAKRFKALIVFSEHRYYGDS 72
L + Y K++ +F G+ + +A A + +
Sbjct: 9 LAFPYRLLGAGKESRECLFLLHGSGVDETTLVPLARRIAPTATLVAARGRIPQEDGFRWF 68
Query: 73 LPFGNKSFDSVSTRGYLSSEQALEDFVDVIEYIQSSAEGEKDRALEGDYNLGRRYPVIAF 132
F+ S F D
Sbjct: 69 ERIDPTRFE------QKSILAETAAFAAFTNEAAKRHGLNLDH-------------ATFL 109
Query: 133 GGSYGGMLASWLRMKYPHIVQGALAASAPIWAFPNMAPCNFY 174
G S G L S L + +P IV+ A A
Sbjct: 110 GYSNGANLVSSLMLLHPGIVRLAALLRPMPVLDHVPATDLAG 151
>d1su0b_ d.224.1.2 (B:) IscU homolog SPy0289 {Streptococcus pyogenes
[TaxId: 1314]}
Length = 136
Score = 27.3 bits (60), Expect = 2.8
Identities = 18/117 (15%), Positives = 30/117 (25%), Gaps = 23/117 (19%)
Query: 170 PCNFYSKTVTEVFKNASQNCHDSIKASWKLIDDVTKDN-----------LGKQWLTDNWK 218
P + E + + C D I + K +D +D +TD
Sbjct: 16 PHHHGQLDGVEAVQLNNPTCGDVISLTVKFDEDKIEDIAFAGNGCTISTASSSMMTDAVI 75
Query: 219 LCTPLETTDDVQKFKGWIGDIYSTLAMVNYPYPNSF-----LRPVPGYPIKKFCAAL 270
+ E F + P L V +P + C+ L
Sbjct: 76 GKSKEEALALADIFSEMVQGQ-------ENPAQKELGEAELLAGVAKFPQRIKCSTL 125
>d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26,
C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 258
Score = 27.9 bits (60), Expect = 2.8
Identities = 17/193 (8%), Positives = 50/193 (25%), Gaps = 4/193 (2%)
Query: 120 DYNLGRRYPVIAFGGSYGGMLASWLRMKYPHIVQGALAAS--APIWAFPNMAPCNFYSKT 177
++ ++YP++ Y G + + LA++ + +F K
Sbjct: 25 HFDKSKKYPLLLDV--YAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKI 82
Query: 178 VTEVFKNASQNCHDSIKASWKLIDDVTKDNLGKQWLTDNWKLCTPLETTDDVQKFKGWIG 237
+ + + + + + + + + + G
Sbjct: 83 MHAINRRLGTFEVEDQIEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVLGSGSGVFKCG 142
Query: 238 DIYSTLAMVNYPYPNSFLRPVPGYPIKKFCAALDSSTQSNVLLKLFEASQVYLNYTQDAQ 297
+ ++ Y R + + +ST + + + ++ T D
Sbjct: 143 IAVAPVSRWEYYDSVYTERYMGLPTPEDNLDHYRNSTVMSRAENFKQVEYLLIHGTADDN 202
Query: 298 CFKWDSGSSIDEL 310
S L
Sbjct: 203 VHFQQSAQISKAL 215
>d3ejna1 a.118.8.6 (A:32-490) Uncharacterized protein BF3025
{Bacteroides fragilis [TaxId: 817]}
Length = 459
Score = 26.9 bits (58), Expect = 6.3
Identities = 33/312 (10%), Positives = 72/312 (23%), Gaps = 13/312 (4%)
Query: 6 YTSNQTFQLKYLYNDKYWDKKNGPIFFYCGNEGAVEVF----TENTGFLWESAKRFKALI 61
Y + + Q D+Y+ G +Y ++ N K F+A
Sbjct: 24 YATKKVIQADGESADQYYKWTRGSFGYYDNLRNVQKMGEEAERVNAPVYTALTKFFRAYY 83
Query: 62 VFSEHRYYGDSLPF---GNKSFDSVSTRGYLSSEQALEDFVDVIEYIQSSAEGEKDRALE 118
+ +GD +P+ + + T Y + E + + +
Sbjct: 84 FYELTLRFGD-IPYSQALKGEKEEIYTPEYDAQEDVFAGILQELREADEILANDASVIDG 142
Query: 119 GDYNLGRRYPVIAFGGSYGGMLASWLRMKYPHIVQGALAASAPIWAFPNMAPCNFYSKTV 178
G S+ + L A + S
Sbjct: 143 DIIYNGNSTQWRKLINSFRLKVLMTLSNHTTV----GNINIASEFKNIATNSPLMNSLAD 198
Query: 179 TEVFKNASQNCHDSIKASWKLIDDVTKDNLGKQWLTDNWKLCTPLETTDDVQKFKGWIGD 238
Q + + + + D ++ + K +G D
Sbjct: 199 NGQLVYLDQQGNRYPQFNAQWSGYYMDDTFIQRMRERRDPRLFIFSAQTNKGKTEGKPID 258
Query: 239 IYSTLAMVNYPYPNSFLRPVPGYPIKKFCAALDSSTQSNVLLKLFEASQVYLNYTQDAQC 298
+S+ + P S + L +++ +
Sbjct: 259 DFSSYEGGDPAAPYSDAIIKVSEGTISPINDRFRTDPIVEPTMLMGYAELQQILAEAV-V 317
Query: 299 FKWDSGSSIDEL 310
W SG++
Sbjct: 318 RGWISGNAQTYY 329
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.422
Gapped
Lambda K H
0.267 0.0422 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,966,527
Number of extensions: 94557
Number of successful extensions: 270
Number of sequences better than 10.0: 1
Number of HSP's gapped: 270
Number of HSP's successfully gapped: 21
Length of query: 499
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 410
Effective length of database: 1,185,626
Effective search space: 486106660
Effective search space used: 486106660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)