BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10891
(142 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 72.4 bits (176), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 61/114 (53%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF + +Y+ A C+++FD+T N+FK W+ + ++ + D P ++L
Sbjct: 64 TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115
NK DL +RQV + + N I + ETS KE + V + + + ++QE
Sbjct: 124 GNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 61/114 (53%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF + +Y+ A C+++FD+T N+FK W+ + ++ + D P ++L
Sbjct: 64 TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115
NK DL +RQV + + N I + ETS KE + V + + + ++QE
Sbjct: 124 GNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 60/114 (52%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF + +Y+ A C+++FD+T N+FK W+ + ++ + D P ++L
Sbjct: 64 TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115
NK D +RQV + + N I + ETS KE + V + + + ++QE
Sbjct: 124 GNKIDFENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 69.3 bits (168), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 8/138 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ +HG II++D+T+Q SF W +++D T S + +L+
Sbjct: 64 TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT----STVLKLLV 119
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDS---MKFLLDVLMRQEGL- 117
NKCDL ++V D+ + + N + + ETS + V D+ M + M Q+ L
Sbjct: 120 GNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLN 179
Query: 118 QNFPNNDDENMVKLSGPA 135
+ +D+ V L G +
Sbjct: 180 ETTQKKEDKGNVNLKGQS 197
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 69.3 bits (168), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 58/103 (56%), Gaps = 4/103 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ +HG II++D+T+Q SF W +++D T S + +L+
Sbjct: 77 TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT----STVLKLLV 132
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSM 104
NKCDL ++V D+ + + N + + ETS + V D+
Sbjct: 133 GNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAF 175
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 68.9 bits (167), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 8/138 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ +HG II++D+T+Q SF W +++D T S + +L+
Sbjct: 64 TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT----STVLKLLV 119
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDS---MKFLLDVLMRQEGL- 117
NKCDL ++V D+ + + N + + ETS + V D+ M + M Q+ L
Sbjct: 120 GNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLN 179
Query: 118 QNFPNNDDENMVKLSGPA 135
+ +D+ V L G +
Sbjct: 180 ETTQKKEDKGNVNLKGQS 197
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 68.9 bits (167), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 60/114 (52%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G ERF + +Y+ A C+++FD+T N+FK W+ + ++ + D P ++L
Sbjct: 64 TAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115
NK DL +RQV + + N I + ETS KE + V + + + ++QE
Sbjct: 124 GNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 56/100 (56%), Gaps = 6/100 (6%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF + Y +D+ ++++D+TN NSF+ T KW DV + GS + ML+
Sbjct: 62 TAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTE----RGSDVIIMLV 117
Query: 62 ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTKEGLMV 100
NK DL RQV I + E KE N + + ETS K G V
Sbjct: 118 GNKTDLADKRQVSIEEGERKAKELNVM-FIETSAKAGYNV 156
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 9/137 (6%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G ERF + Y +D+ ++++D+TN NSF+ T KW DV + GS + ML+
Sbjct: 69 TAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTE----RGSDVIIMLV 124
Query: 62 ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNF 120
NK DL RQV I + E KE N + + ETS K G V + + L G+++
Sbjct: 125 GNKTDLADKRQVSIEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVAAAL---PGMEST 180
Query: 121 PNNDDENMVKLSGPAPK 137
+ E+M+ + P+
Sbjct: 181 QDRSREDMIDIKLEKPQ 197
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+DAH ++++D+TN+ SF N W ++ + MLL
Sbjct: 67 TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ----HDVALMLL 122
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
NK D H R V D E KE+ + + ETS K GL V+ + + L R+
Sbjct: 123 GNKVDSAHERVVKREDGEKLAKEYG-LPFMETSAKTGLNVDLAFTAIAKELKRR 175
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 66/117 (56%), Gaps = 6/117 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T+ YY+ A+G I+ +D+T ++SF + W +DV GS I +L+
Sbjct: 85 TAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA----GSNIVQLLI 140
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDS-MKFLLDVLMRQEG 116
NK DL R+V + + + + ++ + ETS K+ V ++ ++ +++MR G
Sbjct: 141 GNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGG 197
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 55/97 (56%), Gaps = 6/97 (6%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF + Y +D+ ++++D+TN NSF+ T KW DV + GS + ML+
Sbjct: 57 TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTE----RGSDVIIMLV 112
Query: 62 ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTKEG 97
NK DL RQV I + E KE N + + ETS K G
Sbjct: 113 GNKTDLADKRQVSIEEGERKAKELN-VMFIETSAKAG 148
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 9/137 (6%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G ERF + Y +D+ ++++D+TN NSF+ T KW DV + GS + ML+
Sbjct: 72 TAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTE----RGSDVIIMLV 127
Query: 62 ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNF 120
NK DL RQV I + E KE N + + ETS K G V + + L G+++
Sbjct: 128 GNKTDLADKRQVSIEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVAAAL---PGMEST 183
Query: 121 PNNDDENMVKLSGPAPK 137
+ E+M+ + P+
Sbjct: 184 QDRSREDMIDIKLEKPQ 200
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 66.2 bits (160), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ AHG II++D+T+++SF N +W +++D + +L+
Sbjct: 65 TAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAM----ENVNKLLV 120
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSM 104
NKCDL ++V +D + + I + ETS K V +
Sbjct: 121 GNKCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAF 163
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 65.9 bits (159), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 9/131 (6%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G ERF + Y +D+ ++++D+TN NSF+ T KW DV + GS + ML+
Sbjct: 62 TAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTER----GSDVIIMLV 117
Query: 62 ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNF 120
NK DL RQV I + E KE N + + ETS K G V + + L G+++
Sbjct: 118 GNKTDLADKRQVSIEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVAAAL---PGMEST 173
Query: 121 PNNDDENMVKL 131
+ E+M+ +
Sbjct: 174 QDRSREDMIDI 184
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 61/114 (53%), Gaps = 5/114 (4%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T +++DA G ++MFDLT+Q SF N W + + +L+
Sbjct: 91 TAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD---IVLI 147
Query: 62 ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
NK DLP R+V+ ++ I + ETS G V +++ LLD++M++
Sbjct: 148 GNKADLPDQREVNERQARELADKYG-IPYFETSAATGQNVEKAVETLLDLIMKR 200
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ AHG I+++D+T+Q SF N +W +++D + + +L+
Sbjct: 72 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLV 127
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSM 104
NKCDL ++V + + I + ETS K V S
Sbjct: 128 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 170
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ AHG I+++D+T+Q SF N +W +++D + + +L+
Sbjct: 89 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLV 144
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSM 104
NKCDL ++V + + I + ETS K V S
Sbjct: 145 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 187
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 10/111 (9%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDG--SPIPCM 59
T GQER+ +T YY+ A G ++++D+T +NSF+N KW K+ L D S I +
Sbjct: 64 TAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKE------LRDNADSNIVIL 117
Query: 60 LLANKCDLPHRQVDINDIECF-YKEHNFIGWTETSTKEGLMVNDSMKFLLD 109
L+ NK DL H +V IND + Y + + + ETS E V + LL+
Sbjct: 118 LVGNKSDLKHLRV-INDNDATQYAKKEKLAFIETSALEATNVELAFHQLLN 167
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 60/112 (53%), Gaps = 6/112 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF + Y +D+ ++++D+TN NSF+ T KW DV + GS + ML+
Sbjct: 58 TAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTE----RGSDVIIMLV 113
Query: 62 ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM 112
NK DL RQ+ I + E KE + + + ETS K G V + + L+
Sbjct: 114 GNKTDLADKRQITIEEGEQRAKELS-VMFIETSAKTGYNVKQLFRRVASALL 164
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ AHG I+++D+T+Q SF N +W +++D + + +L+
Sbjct: 72 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLV 127
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSM 104
NKCDL ++V + + I + ETS K V S
Sbjct: 128 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 170
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ AHG I+++D+T+Q SF N +W +++D + + +L+
Sbjct: 81 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLV 136
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSM 104
NKCDL ++V + + I + ETS K V S
Sbjct: 137 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 179
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ AHG I+++D+T+Q SF N +W +++D + + +L+
Sbjct: 62 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLV 117
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSM 104
NKCDL ++V + + I + ETS K V S
Sbjct: 118 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 160
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ AHG I+++D+T+Q SF N +W +++D + + +L+
Sbjct: 55 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLV 110
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSM 104
NKCDL ++V + + I + ETS K V S
Sbjct: 111 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 153
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ AHG I+++D+T+Q SF N +W +++D + + +L+
Sbjct: 62 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLV 117
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSM 104
NKCDL ++V + + I + ETS K V S
Sbjct: 118 GNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 160
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 63.9 bits (154), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 4/117 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ AHG I+++D+T+Q S+ N +W +++D + + +L+
Sbjct: 65 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYAS----ENVNKLLV 120
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQ 118
NK DL ++V N + + I + ETS K V + + + ++ GL+
Sbjct: 121 GNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGLE 177
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 54/100 (54%), Gaps = 6/100 (6%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF + Y +D+ ++++D+TN NSF T KW DV + GS + ML+
Sbjct: 70 TAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTE----RGSDVIIMLV 125
Query: 62 ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTKEGLMV 100
NK DL RQV + E KE N + + ETS K G V
Sbjct: 126 GNKTDLSDKRQVSTEEGERKAKELNVM-FIETSAKAGYNV 164
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 72/146 (49%), Gaps = 11/146 (7%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G ERF +T +++DA G ++MFDLT+Q SF N W + + + L+
Sbjct: 77 TAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV---LI 133
Query: 62 ANKCDLPHRQVDINDIECF-YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ-----E 115
NK DLP Q ++N+ + E I + ETS G V S++ LLD++M++ E
Sbjct: 134 GNKADLPD-QREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRMEKCVE 192
Query: 116 GLQNFPNNDDENMVKLSGPAPKVEKK 141
Q + N KL G P EKK
Sbjct: 193 KTQVPDTVNGGNSGKLDGEKP-AEKK 217
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 61/114 (53%), Gaps = 5/114 (4%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G ERF +T +++DA G ++MFDLT+Q SF N W + + + L+
Sbjct: 77 TAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV---LI 133
Query: 62 ANKCDLPHRQVDINDIECF-YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
NK DLP Q ++N+ + E I + ETS G V S++ LLD++M++
Sbjct: 134 GNKADLPD-QREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKR 186
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE F +TR YY+ A G ++++D+T +++F + W +D S + ML+
Sbjct: 66 TAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSN----SNMVIMLI 121
Query: 62 ANKCDL-PHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSM 104
NK DL R+V + E F +EH I + ETS K V ++
Sbjct: 122 GNKSDLESRREVKKEEGEAFAREHGLI-FMETSAKTASNVEEAF 164
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE F +TR YY+ A G ++++D+T + +F + W +D + S + ML+
Sbjct: 77 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS----SNMVIMLI 132
Query: 62 ANKCDLPHRQ-VDINDIECFYKEHNFIGWTETSTKEGLMVNDSM 104
NK DL R+ V + E F +EH I + ETS K V ++
Sbjct: 133 GNKSDLESRRDVKREEGEAFAREHGLI-FMETSAKTACNVEEAF 175
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 62.4 bits (150), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 56/103 (54%), Gaps = 8/103 (7%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQER+ + +YY+ A II+FD+TNQ SF+ KW +++ + G+P M L
Sbjct: 68 TAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQ-----AQGNPNMVMAL 122
Query: 62 A-NKCD-LPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
A NK D L R+V D + Y + N + + ETS K V +
Sbjct: 123 AGNKSDLLDARKVTAEDAQT-YAQENGLFFMETSAKTATNVKE 164
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 62.4 bits (150), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 6/102 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQER+ + +YY+ A I+++D+TNQ +F W K++ + + S I L
Sbjct: 64 TAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPS----IVIALA 119
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
NK DL + R V+ + + Y + N + + ETS K + VND
Sbjct: 120 GNKADLANKRMVEYEEAQA-YADDNSLLFMETSAKTAMNVND 160
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 62.4 bits (150), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ AHG I+++D+T+Q S+ N +W +++D + + +L+
Sbjct: 65 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYAS----ENVNKLLV 120
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSM 104
NK DL ++V N + + I + ETS K V +
Sbjct: 121 GNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAF 163
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 72/135 (53%), Gaps = 11/135 (8%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ A G I+++D+T +++F W +++ CT +D I L+
Sbjct: 71 TAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRND---IVNXLV 127
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFP 121
NK D +R+VD N+ F ++H+ + + E S K V + + L++ +++ GL
Sbjct: 128 GNKIDKENREVDRNEGLKFARKHSXL-FIEASAKTCDGVQCAFEELVEKIIQTPGLWESE 186
Query: 122 NNDDENMVKLSGPAP 136
N + SGP+
Sbjct: 187 NQN-------SGPSS 194
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 9/114 (7%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ HG I+++D+T+ SF N +W +++ C + +L+
Sbjct: 65 TAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-----DDVCRILV 119
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWT--ETSTKEGLMVNDSMKFLLDVLMR 113
NK D P R+V + E YK +G ETS KE + V + + ++++R
Sbjct: 120 GNKNDDPERKV--VETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLR 171
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 70/139 (50%), Gaps = 10/139 (7%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQER+ +T YY+ A G ++++D+ +++N +W K++ S I ML+
Sbjct: 61 TAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA----DSNIVIMLV 116
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR---QEGLQ 118
NK DL H + D + E N + + ETS + V ++ K +L + R Q+ +
Sbjct: 117 GNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIA 176
Query: 119 NFPNNDDE---NMVKLSGP 134
+ +D+ N+V +S P
Sbjct: 177 DRAAHDESPGNNVVDISVP 195
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ AHG I+++D+T+Q SF N +W +++D + + +L+
Sbjct: 54 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLV 109
Query: 62 ANKCDLP 68
NKCDL
Sbjct: 110 GNKCDLT 116
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ AHG I+++D+T+Q SF N +W +++D + + +L+
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLV 119
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSM 104
KCDL ++V + + I + ETS K V S
Sbjct: 120 GIKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 162
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSP-IPCML 60
T GQER+ + +YY+ A I+++D+TN+ SF W K++ + SP I L
Sbjct: 63 TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-----SPNIVIAL 117
Query: 61 LANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
NK DL + R VD + + Y + N + + ETS K + VN+
Sbjct: 118 SGNKADLANKRAVDFQEAQS-YADDNSLLFMETSAKTSMNVNE 159
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSP-IPCML 60
T GQER+ + +YY+ A I+++D+TN+ SF W K++ + SP I L
Sbjct: 62 TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-----SPNIVIAL 116
Query: 61 LANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
NK DL + R VD + + Y + N + + ETS K + VN+
Sbjct: 117 SGNKADLANKRAVDFQEAQS-YADDNSLLFMETSAKTSMNVNE 158
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSP-IPCML 60
T GQER+ + +YY+ A I+++D+TN+ SF W K++ + SP I L
Sbjct: 62 TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-----SPNIVIAL 116
Query: 61 LANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
NK DL + R VD + + Y + N + + ETS K + VN+
Sbjct: 117 SGNKADLANKRAVDFQEAQS-YADDNSLLFMETSAKTSMNVNE 158
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSP-IPCML 60
T GQER+ + +YY+ A I+++D+TN+ SF W K++ + SP I L
Sbjct: 62 TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-----SPNIVIAL 116
Query: 61 LANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
NK DL + R VD + + Y + N + + ETS K + VN+
Sbjct: 117 SGNKADLANKRAVDFQEAQS-YADDNSLLFMETSAKTSMNVNE 158
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSP-IPCML 60
T GQER+ + +YY+ A I+++D+TN+ SF W K++ + SP I L
Sbjct: 62 TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-----SPNIVIAL 116
Query: 61 LANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
NK DL + R VD + + Y + N + + ETS K + VN+
Sbjct: 117 SGNKADLANKRAVDFQEAQS-YADDNSLLFMETSAKTSMNVNE 158
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSP-IPCML 60
T GQER+ + +YY+ A I+++D+TN+ SF W K++ + SP I L
Sbjct: 62 TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-----SPNIVIAL 116
Query: 61 LANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
NK DL + R VD + + Y + N + + ETS K + VN+
Sbjct: 117 SGNKADLANKRAVDFQEAQS-YADDNSLLFMETSAKTSMNVNE 158
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSP-IPCML 60
T GQER+ + +YY+ A I+++D+TN+ SF W K++ + SP I L
Sbjct: 62 TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-----SPNIVIAL 116
Query: 61 LANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
NK DL + R VD + + Y + N + + ETS K + VN+
Sbjct: 117 SGNKADLANKRAVDFQEAQS-YADDNSLLFMETSAKTSMNVNE 158
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ A G ++++D+TN+ SF N W ++++ + + + M+L
Sbjct: 62 TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS----ADVEKMIL 117
Query: 62 ANKCDL-PHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSM 104
NKCD+ RQV E ++ I + ETS K + V ++
Sbjct: 118 GNKCDVNDKRQVSKERGEKLALDYG-IKFMETSAKANINVENAF 160
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 59.7 bits (143), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ A G ++++D+TN+ SF N W ++++ + + + M+L
Sbjct: 64 TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS----ADVEKMIL 119
Query: 62 ANKCDL-PHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSM 104
NKCD+ RQV E ++ I + ETS K + V ++
Sbjct: 120 GNKCDVNDKRQVSKERGEKLALDYG-IKFMETSAKANINVENAF 162
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 59.3 bits (142), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G ERF +T +++DA G +++FDLTN+ SF N W + + + + C
Sbjct: 77 TAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLC--- 133
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
NK DL ++ + E I + ETS G ++ +++ LLD++M++
Sbjct: 134 GNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKR 186
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 59.3 bits (142), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 61/116 (52%), Gaps = 9/116 (7%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDV--DLKCTLSDGSPIPCM 59
T G ERF +T +++DA G ++ FDLT+Q SF N W + + C D +
Sbjct: 77 TAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPD-----IV 131
Query: 60 LLANKCDLPHRQVDINDIECF-YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
L+ NK DLP Q ++N+ + E I + ETS G V S++ LLD++ ++
Sbjct: 132 LIGNKADLPD-QREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIXKR 186
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 58.9 bits (141), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 5/114 (4%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G ERF +T +++DA G ++ FDLT+Q SF N W + + +L+
Sbjct: 77 TAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPD---IVLI 133
Query: 62 ANKCDLPHRQVDINDIECF-YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
NK DLP Q ++N+ + E I + ETS G V S++ LLD++ ++
Sbjct: 134 GNKADLPD-QREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIXKR 186
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 58.9 bits (141), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 53/104 (50%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF + +Y+ + C++ F + + SF+N WKK+ + + P ++L
Sbjct: 67 TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL 126
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMK 105
NK D+ RQV + + + K++ + ETS K+ V + +
Sbjct: 127 GNKTDIKERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFE 170
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQER+ +T YY+ A G ++++D+ +++N +W K++ S I ML+
Sbjct: 76 TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLV 131
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113
NK DL H R V ++ F E N + + ETS + V + + +L + R
Sbjct: 132 GNKSDLRHLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTILTEIYR 183
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSP-IPCML 60
T GQER+ + YY+ A I+++D+TN+ SF W K++ + SP I L
Sbjct: 63 TAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-----SPNIVIAL 117
Query: 61 LANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
NK DL + R VD + + Y + N + + ETS K VN+
Sbjct: 118 SGNKADLANKRAVDFQEAQS-YADDNSLLFXETSAKTSXNVNE 159
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 53/104 (50%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF + +Y+ + C++ F + + SF+N WKK+ + + P ++L
Sbjct: 63 TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL 122
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMK 105
NK D+ RQV + + + +++ + ETS K+ V + +
Sbjct: 123 GNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFE 166
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQER+ +T YY+ A G I+M+D+TN+ SF W + K D + + +L+
Sbjct: 79 TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQI--KTYSWDNAQV--ILV 134
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111
NKCD+ +V + E + E S KE + V + + L+D +
Sbjct: 135 GNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 184
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 53/104 (50%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF + +Y+ + C++ F + + SF+N WKK+ + + P ++L
Sbjct: 65 TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL 124
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMK 105
NK D+ RQV + + + +++ + ETS K+ V + +
Sbjct: 125 GNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFE 168
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQER+ +T YY+ A G ++++D+ +++N +W K++ S I ML+
Sbjct: 85 TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLV 140
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
NK DL H R V ++ F E N + + ETS + V + + +L
Sbjct: 141 GNKSDLRHLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTIL 187
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 8/103 (7%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSP-IPCML 60
T GQER+ + +YY+ A I+++D+TN ++F W K++ + SP I L
Sbjct: 61 TAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQ-----ASPNIVIAL 115
Query: 61 LANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
NK DL R V+ + + Y + N + + ETS K + VN+
Sbjct: 116 AGNKADLASKRAVEFQEAQA-YADDNSLLFMETSAKTAMNVNE 157
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSP-IPCML 60
T GQER+ + +YY+ A I+++D+TN ++F W K++ SP I L
Sbjct: 59 TAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ-----RQASPNIVIAL 113
Query: 61 LANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
NK DL R V+ + + Y + N + + ETS K + VN+
Sbjct: 114 AGNKADLASKRAVEFQEAQA-YADDNSLLFMETSAKTAMNVNE 155
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 4/110 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQER+ +T YY+ A G I+M+D+TN+ SF W + K D + + +L+
Sbjct: 61 TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQI--KTYSWDNAQV--LLV 116
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111
NKCD+ +V ++ +H + E S K+ + V + + L+DV+
Sbjct: 117 GNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 6/114 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ A G I+++D+T++ +F N +W K V+ +L+
Sbjct: 76 TAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN----DEAQLLLV 131
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115
NK D+ R V + E KE I + E+S K VN+ + F L L++++
Sbjct: 132 GNKSDMETRVVTADQGEALAKELG-IPFIESSAKNDDNVNE-IFFTLAKLIQEK 183
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSP-IPCML 60
T G ER+ + +YY+ A I+++D+TN+ SF W K++ SP I L
Sbjct: 61 TAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQ-----RQASPNIVIAL 115
Query: 61 LANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
NK DL + R VD + + Y + N + + ETS K + VN+
Sbjct: 116 SGNKADLANKRAVDFQEAQS-YADDNSLLFMETSAKTSMNVNE 157
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ A G I+++D+T++ +F N +W K V+ +L+
Sbjct: 59 TAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAN----DEAQLLLV 114
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
NK D+ R V + E KE I + E+S K VN+
Sbjct: 115 GNKSDMETRVVTADQGEALAKELG-IPFIESSAKNDDNVNE 154
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 54/107 (50%), Gaps = 4/107 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE ++ M Y + G + +F + N SF++ +++ + + D +P +L+
Sbjct: 59 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK---RVKDSEDVPMVLV 115
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
NKCDLP R VD + + + I + ETS K V+D+ L+
Sbjct: 116 GNKCDLPSRTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLV 161
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 56.6 bits (135), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 6/114 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ A G I+++D+T++ +F N +W K V+ +L+
Sbjct: 63 TAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN----DEAQLLLV 118
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115
NK D+ R V + E KE I + E+S K VN+ + F L L++++
Sbjct: 119 GNKSDMETRVVTADQGEALAKELG-IPFIESSAKNDDNVNE-IFFTLAKLIQEK 170
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 56.2 bits (134), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 62/114 (54%), Gaps = 6/114 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQER+ +T YY+ A G +I++D++ +S++N W +L+ D + L+
Sbjct: 69 TAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLS--ELRENADDN--VAVGLI 124
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
NK DL H R V + + F +E+ + +TETS V+ + + L++ + ++
Sbjct: 125 GNKSDLAHLRAVPTEESKTFAQENQLL-FTETSALNSENVDKAFEELINTIYQK 177
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 56.2 bits (134), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 5/108 (4%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE F +T+ YY+ A C+++F T++ SF+ W++ V +++ IP L+
Sbjct: 61 TAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKV-----VAEVGDIPTALV 115
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLD 109
NK DL N+ + + + TS KE L V++ K+L +
Sbjct: 116 QNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE 163
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 55.8 bits (133), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF + +Y+ A C++ F + ++ SF+N W+K+ + D P ++L
Sbjct: 63 TAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVL 122
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKE 96
NK D RQV + + + E+ + ETS K+
Sbjct: 123 GNKVDKEDRQVTTEEAQTWCMENGDYPYLETSAKD 157
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 55.8 bits (133), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ A G I+++D+T++ +F N +W K V+ +L+
Sbjct: 59 TAGQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHAN----DEAQLLLV 114
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115
NK D R V + E KE I + E+S K VN+ + F L L++++
Sbjct: 115 GNKSDXETRVVTADQGEALAKELG-IPFIESSAKNDDNVNE-IFFTLAKLIQEK 166
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 55.8 bits (133), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 6/113 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G ER+ +T YY+ A G ++++D+ +++N +W K++ S I ML+
Sbjct: 64 TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLV 119
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113
NK DL H R V ++ F E N + + ETS + V + + +L + R
Sbjct: 120 GNKSDLRHLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTILTEIYR 171
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 55.8 bits (133), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 55/98 (56%), Gaps = 8/98 (8%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSD-GSPIPCML 60
T GQERF + Y +D+ I+++D+TN+ SF+NT KW +D+ L++ G + L
Sbjct: 57 TAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDI-----LNERGKDVIIAL 111
Query: 61 LANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEG 97
+ NK DL R+V + +E+N + ETS K G
Sbjct: 112 VGNKTDLGDLRKVTYEEGXQKAQEYN-TXFHETSAKAG 148
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 55.5 bits (132), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ A G I+++D+T++ +F N +W K V+ +L+
Sbjct: 59 TAGQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHAN----DEAQLLLV 114
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115
NK D R V + E KE I + E+S K VN+ + F L L++++
Sbjct: 115 GNKSDXETRVVTADQGEALAKELG-IPFIESSAKNDDNVNE-IFFTLAKLIQEK 166
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 55.5 bits (132), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQER+ +T YY+ A G ++M+D+ NQ SF W + K D + + +L+
Sbjct: 78 TAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQI--KTYSWDNAQV--ILV 133
Query: 62 ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111
NKCDL R V D + F + E S KE + V + L+DV+
Sbjct: 134 GNKCDLEDERVVPAEDGRRLADDLGF-EFFEASAKENINVKQVFERLVDVI 183
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 58/105 (55%), Gaps = 8/105 (7%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSP-IPCML 60
T GQERF +TR YY+ A G ++++D+T++ ++ + W D TL+ SP I +L
Sbjct: 81 TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDAR---TLA--SPNIVVIL 135
Query: 61 LANKCDL-PHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSM 104
NK DL P R+V + F +E+ + + ETS G V ++
Sbjct: 136 CGNKKDLDPEREVTFLEASRFAQENELM-FLETSALTGENVEEAF 179
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G ER+ +T YY+ A G ++++D+ +++N +W K++ S I ML+
Sbjct: 85 TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLV 140
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
NK DL H R V ++ F E N + + ETS + V + + +L
Sbjct: 141 GNKSDLRHLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTIL 187
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G E ++ M Y + G + +F + N SF++ +++ + + D +P +L+
Sbjct: 76 TAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK---RVKDSEDVPMVLV 132
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
NKCDLP R VD + + + I + ETS K V+D+ L+
Sbjct: 133 GNKCDLPSRTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLV 178
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 8/103 (7%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSP-IPCML 60
T G ER+ + +YY+ A I+++D+TN ++F W K++ SP I L
Sbjct: 61 TAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ-----RQASPNIVIAL 115
Query: 61 LANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
NK DL R V+ + + Y + N + + ETS K + VN+
Sbjct: 116 AGNKADLASKRAVEFQEAQA-YADDNSLLFMETSAKTAMNVNE 157
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 6/104 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +TR YY+ A G ++++D+T ++++ + W D L++ + + +L+
Sbjct: 71 TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDAR---NLTNPNTV-IILI 126
Query: 62 ANKCDL-PHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSM 104
NK DL R V + + F +E+ + + E S K G V D+
Sbjct: 127 GNKADLEAQRDVTYEEAKQFAEENGLL-FLEASAKTGENVEDAF 169
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 54.7 bits (130), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE ++ M Y + G + +F + N SF + +++ + + D +P +L+
Sbjct: 76 TAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIK---RVKDSDDVPMVLV 132
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
NKCDLP R VD K + I + ETS K V D+ L+
Sbjct: 133 GNKCDLPTRTVDTKQAHELAKSYG-IPFIETSAKTRQGVEDAFYTLV 178
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 49/80 (61%), Gaps = 5/80 (6%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF + +YY+D++G I+++D+T+++SF+ W K +L+ L G+ I ++
Sbjct: 76 TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVK--ELRKML--GNEICLCIV 131
Query: 62 ANKCDL-PHRQVDINDIECF 80
NK DL R V I + E +
Sbjct: 132 GNKIDLEKERHVSIQEAESY 151
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE+F + YY A IIMFD+T++ ++KN W +D+ C IP +L
Sbjct: 71 TAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLC 125
Query: 62 ANKCDLPHRQVDINDIECFYKEHNF 86
NK D+ R+V I F+++ N
Sbjct: 126 GNKVDIKDRKVKAKSI-VFHRKKNL 149
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 49/80 (61%), Gaps = 5/80 (6%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF + +YY+D++G I+++D+T+++SF+ W K +L+ L G+ I ++
Sbjct: 62 TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVK--ELRKML--GNEICLCIV 117
Query: 62 ANKCDL-PHRQVDINDIECF 80
NK DL R V I + E +
Sbjct: 118 GNKIDLEKERHVSIQEAESY 137
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 49/80 (61%), Gaps = 5/80 (6%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF + +YY+D++G I+++D+T+++SF+ W K +L+ L G+ I ++
Sbjct: 62 TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVK--ELRKML--GNEICLCIV 117
Query: 62 ANKCDL-PHRQVDINDIECF 80
NK DL R V I + E +
Sbjct: 118 GNKIDLEKERHVSIQEAESY 137
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE+F + YY A IIMFD+T++ ++KN W +D+ C IP +L
Sbjct: 71 TAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLC 125
Query: 62 ANKCDLPHRQVDINDIECFYKEHNF 86
NK D+ R+V I F+++ N
Sbjct: 126 GNKVDIKDRKVKAKSI-VFHRKKNL 149
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE+F + YY A IIMFD+T++ ++KN W +D+ C IP +L
Sbjct: 66 TAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLC 120
Query: 62 ANKCDLPHRQVDINDIECFYKEHNF 86
NK D+ R+V I F+++ N
Sbjct: 121 GNKVDIKDRKVKAKSI-VFHRKKNL 144
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE+F + YY A IIMFD+T++ ++KN W +D+ C IP +L
Sbjct: 66 TAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLC 120
Query: 62 ANKCDLPHRQVDINDIECFYKEHNF 86
NK D+ R+V I F+++ N
Sbjct: 121 GNKVDIKDRKVKAKSI-VFHRKKNL 144
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE+F + YY A IIMFD+T++ ++KN W +D+ C IP +L
Sbjct: 66 TAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLC 120
Query: 62 ANKCDLPHRQVDINDIECFYKEHNF 86
NK D+ R+V I F+++ N
Sbjct: 121 GNKVDIKDRKVKAKSI-VFHRKKNL 144
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE+F + YY A IIMFD+T++ ++KN W +D+ C IP +L
Sbjct: 59 TAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLC 113
Query: 62 ANKCDLPHRQVDINDIECFYKEHNF 86
NK D+ R+V I F+++ N
Sbjct: 114 GNKVDIKDRKVKAKSI-VFHRKKNL 137
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQER+ + +YY+ A I++FD++N N+ W + + S +L+
Sbjct: 100 TAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKI------SSNYIIILV 153
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEG 97
ANK D QVDI +++ + +++N + + +TS K G
Sbjct: 154 ANKIDKNKFQVDILEVQKYAQDNNLL-FIQTSAKTG 188
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE+F + YY A IIMFD+T++ ++KN W +D+ C IP +L
Sbjct: 66 TAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLC 120
Query: 62 ANKCDLPHRQVDINDIECFYKEHNF 86
NK D+ R+V I F+++ N
Sbjct: 121 GNKVDIKDRKVKAKSI-VFHRKKNL 144
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE+F + YY A IIMFD+T++ ++KN W +D+ C IP +L
Sbjct: 66 TAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLC 120
Query: 62 ANKCDLPHRQVDINDIECFYKEHNF 86
NK D+ R+V I F+++ N
Sbjct: 121 GNKVDIKDRKVKAKSI-VFHRKKNL 144
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE+F + YY A IIMFD+T++ ++KN W +D+ C IP +L
Sbjct: 66 TAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLC 120
Query: 62 ANKCDLPHRQVDINDIECFYKEHNF 86
NK D+ R+V I F+++ N
Sbjct: 121 GNKVDIKDRKVKAKSI-VFHRKKNL 144
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 11/134 (8%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE ++ M Y + G + +F + N SF++ ++++ + + D +P +L+
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFP 121
NKCDL R V+ + + + I + ETS K V D+ + L +RQ L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAF-YTLVREIRQHKLRKL- 171
Query: 122 NNDDENMVKLSGPA 135
N DE SGP
Sbjct: 172 NPPDE-----SGPG 180
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE ++ M Y + G + +F + N SF++ +++ + + D +P +L+
Sbjct: 59 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK---RVKDSEDVPMVLV 115
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
NK DLP R VD + + + I + ETS K V+D+ L+
Sbjct: 116 GNKSDLPSRTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLV 161
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE ++ M Y + G + +F + N SF++ +++ + + D +P +L+
Sbjct: 59 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK---RVKDSEDVPMVLV 115
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
NK DLP R VD + + + I + ETS K V+D+ L+
Sbjct: 116 GNKSDLPSRTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLV 161
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE ++ M Y + G + +F + N SF++ +++ + + D +P +L+
Sbjct: 59 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK---RVKDSEDVPMVLV 115
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
NK DLP R VD + + + I + ETS K V+D+ L+
Sbjct: 116 GNKSDLPSRTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLV 161
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 53.5 bits (127), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 60/114 (52%), Gaps = 5/114 (4%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ A G I+++D+T + +F + KW K +D K D +L+
Sbjct: 82 TAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMID-KYASEDAE---LLLV 137
Query: 62 ANKCDL-PHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
NK D R++ E F ++ + + E S K+ V++ L+D ++++
Sbjct: 138 GNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 11/121 (9%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T+ YY+ A+ I+ +D+T + SF+ +W ++++ + + + +L+
Sbjct: 82 TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS----NKVITVLV 137
Query: 62 ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR--QEGLQ 118
NK DL R+V E F + + + ETS KE ++ K LD+ R E Q
Sbjct: 138 GNKIDLAERREVSQQRAEEFSEAQDMY-YLETSAKES---DNVEKLFLDLACRLISEARQ 193
Query: 119 N 119
N
Sbjct: 194 N 194
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 53.1 bits (126), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 38/65 (58%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF + +Y+ A C++++D+TN +SF+N W+ + + ++ P ++L
Sbjct: 65 TAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVIL 124
Query: 62 ANKCD 66
NK D
Sbjct: 125 GNKID 129
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 52.8 bits (125), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE++ + YY A IIMFD+T++ ++KN W +D+ C IP +L
Sbjct: 66 TAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLC 120
Query: 62 ANKCDLPHRQVDINDIECFYKEHNF 86
NK D+ R+V I F+++ N
Sbjct: 121 GNKVDIKDRKVKAKSI-VFHRKKNL 144
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE ++ M Y + G + +F + N SF++ ++++ + + D +P +L+
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
NKCDL R V+ + + + I + ETS K V D+ L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE ++ M Y + G + +F + N SF++ ++++ + + D +P +L+
Sbjct: 64 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 120
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
NKCDL R V+ + + + I + ETS K V D+ L+
Sbjct: 121 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 166
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE ++ M Y + G + +F + N SF++ ++++ + + D +P +L+
Sbjct: 65 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 121
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
NKCDL R V+ + + + I + ETS K V D+ L+
Sbjct: 122 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 167
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE ++ M Y + G + +F + N SF++ ++++ + + D +P +L+
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
NKCDL R V+ + + + I + ETS K V D+ L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQ RF +TR YY+ A G ++++D+T ++++ + W D L++ + + +L+
Sbjct: 86 TAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDAR---NLTNPNTV-IILI 141
Query: 62 ANKCDL-PHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSM 104
NK DL R V + + F +E+ + + E S K G V D+
Sbjct: 142 GNKADLEAQRDVTYEEAKQFAEENGLL-FLEASAKTGENVEDAF 184
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 5/119 (4%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE ++ M Y + G + +F + N SF++ ++++ + + D +P +L+
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNF 120
NKCDL R V+ + + + I + ETS K V D+ + L +RQ L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAF-YTLVREIRQHKLRKL 171
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 5/119 (4%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE ++ M Y + G + +F + N SF++ ++++ + + D +P +L+
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNF 120
NKCDL R V+ + + + I + ETS K V D+ + L +RQ L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAF-YTLVREIRQHKLRKL 171
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 52.4 bits (124), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE ++ M Y + G + +F + N SF++ ++++ + + D +P +L+
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
NKCDL R V+ + + + I + ETS K V D+ L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE ++ M Y + G + +F + N SF++ ++++ + + D +P +L+
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
NKCDL R V+ + + + I + ETS K V D+ L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE ++ M Y + G + +F + N SF++ ++++ + + D +P +L+
Sbjct: 63 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 119
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
NKCDL R V+ + + + I + ETS K V D+ L+
Sbjct: 120 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 165
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE ++ M Y + G + +F + N SF++ ++++ + + D +P +L+
Sbjct: 63 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 119
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
NKCDL R V+ + + + I + ETS K V D+ L+
Sbjct: 120 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 165
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE ++ M Y + G + +F + N SF++ ++++ + + D +P +L+
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
NKCDL R V+ + + + I + ETS K V D+ L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE ++ M Y + G + +F + N SF++ ++++ + + D +P +L+
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
NKCDL R V+ + + + I + ETS K V D+ L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE ++ M Y + G + +F + N SF++ ++++ + + D +P +L+
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
NKCDL R V+ + + + I + ETS K V D+ L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE ++ M Y + G + +F + N SF++ ++++ + + D +P +L+
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
NKCDL R V+ + + + I + ETS K V D+ L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE ++ M Y + G + +F + N SF++ ++++ + + D +P +L+
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
NKCDL R V+ + + + I + ETS K V D+ L+
Sbjct: 115 GNKCDLAGRTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G ER+ +T YY+ A G I+ +D+TN+ SF W +K D + + +L+
Sbjct: 64 TAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDWS--TQIKTYSWDNAQV--LLV 119
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111
NKCD +V ++ +H + E S K+ + V + + L+DV+
Sbjct: 120 GNKCDXEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 169
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE ++ M Y + G + +F + N SF++ ++++ + + D +P +L+
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
NKCDL R V+ + + + I + ETS K V D+ L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE ++ M Y + G + +F + N SF++ ++++ + + D +P +L+
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
NKCDL R V+ + + + I + ETS K V D+ L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE ++ M Y + G + +F + N SF++ ++++ + + D +P +L+
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
NKCDL R V+ + + + I + ETS K V D+ L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE ++ M Y + G + +F + N SF++ ++++ + + D +P +L+
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
NKCDL R V+ + + + I + ETS K V D+ L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 10/104 (9%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSP--IPCM 59
T GQERF + +YY+ + +I++D+T Q+SF KW K+ L + P I
Sbjct: 79 TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKE------LKEHGPENIVMA 132
Query: 60 LLANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
+ NKCDL R+V + D + + + I ETS K + + +
Sbjct: 133 IAGNKCDLSDIREVPLKDAKEYAESIGAI-VVETSAKNAINIEE 175
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE ++ M Y + G + +F + N SF++ ++++ + + D +P +L+
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
NKCDL R V+ + + + I + ETS K V D+ L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G ER+ +T YY+ A G ++++D+ +++N +W K++ S I L+
Sbjct: 67 TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIXLV 122
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
NK DL H R V ++ F E N + + ETS + V + + +L
Sbjct: 123 GNKSDLRHLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTIL 169
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE ++ M Y + G + +F + N SF++ ++++ + + D +P +L+
Sbjct: 58 TAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
NKCDL R V+ + + + I + ETS K V D+ L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G ER+ +T YY+ A G ++++D+ +++N +W K++ S I L+
Sbjct: 61 TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIXLV 116
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
NK DL H R V ++ F E N + + ETS + V + + +L
Sbjct: 117 GNKSDLRHLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTIL 163
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 52.0 bits (123), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE ++ M Y + G + +F + N SF++ ++++ + + D +P +L+
Sbjct: 58 TTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
NKCDL R V+ + + + I + ETS K V D+ L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE+F + YY A II FD+T++ ++KN W +D+ C IP +L
Sbjct: 66 TAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLC 120
Query: 62 ANKCDLPHRQVDINDIECFYKEHNF 86
NK D+ R+V I F+++ N
Sbjct: 121 GNKVDIKDRKVKAKSI-VFHRKKNL 144
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE ++ M Y + G + +F + N SF++ ++++ + + D +P +L+
Sbjct: 58 TGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
NKCDL R V+ + + + I + ETS K V D+ L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE F M Y + HG +++F + ++ SF K + + D P +L+
Sbjct: 64 TAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQI---LRVKDRDDFPVVLV 120
Query: 62 ANKCDL-PHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113
NK DL RQV ++ F H+ + + E S K L V+++ + L+ + +
Sbjct: 121 GNKADLESQRQVPRSEASAFGASHH-VAYFEASAKLRLNVDEAFEQLVRAVRK 172
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE ++ M Y + G + +F + N SF++ ++++ + + D +P +L+
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
N+CDL R V+ + + + I + ETS K V D+ L+
Sbjct: 115 GNRCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G E+F + YY +A IIMFD+T++ ++KN W +D+ C IP +L
Sbjct: 68 TAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVC-----ENIPIVLC 122
Query: 62 ANKCDLPHRQVDINDIECFYKEHNF 86
NK D+ R+V I F+++ N
Sbjct: 123 GNKVDVKERKVKAKTI-TFHRKKNL 146
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 5/111 (4%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE F M Y + G +++F +T++ SF+ K+++ + + D P +L+
Sbjct: 60 TAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQI---LRVKDRDEFPMILI 116
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111
NK DL H RQV + + ++ + + E S K + V+ + L+ V+
Sbjct: 117 GNKADLDHQRQVTQEEGQQLARQLK-VTYMEASAKIRMNVDQAFHELVRVI 166
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G E+F + YY A IIMFD+T++ ++KN W +D+ C IP +L
Sbjct: 66 TAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLC 120
Query: 62 ANKCDLPHRQVDINDIECFYKEHNF 86
NK D+ R+V I F+++ N
Sbjct: 121 GNKVDIKDRKVKAKSI-VFHRKKNL 144
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G E+F + YY A IIMFD+T++ ++KN W +D+ C IP +L
Sbjct: 68 TAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLC 122
Query: 62 ANKCDLPHRQVDINDIECFYKEHNF 86
NK D+ R+V I F+++ N
Sbjct: 123 GNKVDIKDRKVKAKSI-VFHRKKNL 146
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G ER+ +T YY+ A G +++FDLT ++ +W K++ + I ML+
Sbjct: 81 TAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAE----ATIVVMLV 136
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETST 94
NK DL R+V + F E+N + + ETS
Sbjct: 137 GNKSDLSQAREVPTEEARMF-AENNGLLFLETSA 169
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 9/105 (8%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF + YY++A ++++D+T SF W K++ + + I L+
Sbjct: 59 TAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS----KDIIIALV 114
Query: 62 ANKCDL----PHRQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
NK D R+V + E +E + + ETS K G VND
Sbjct: 115 GNKIDXLQEGGERKVAREEGEKLAEEKGLL-FFETSAKTGENVND 158
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G E+F + YY A IIMFD+T++ ++KN W +D+ C IP +L
Sbjct: 62 TAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLC 116
Query: 62 ANKCDLPHRQVDINDIECFYKEHNF 86
NK D+ R+V I F+++ N
Sbjct: 117 GNKVDIKDRKVKAKSI-VFHRKKNL 140
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G E+F + YY +A IIMFD+T++ ++KN W +D+ C IP +L
Sbjct: 61 TAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVC-----ENIPIVLC 115
Query: 62 ANKCDLPHRQVDINDIECFYKEHN 85
NK D+ R+V I F+++ N
Sbjct: 116 GNKVDVKERKVKAKTI-TFHRKKN 138
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G ER+ +T YY+ A G +++FDLT ++ +W K++ + I ML+
Sbjct: 66 TAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAE----ATIVVMLV 121
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETS 93
NK DL R+V + F E+N + + ETS
Sbjct: 122 GNKSDLSQAREVPTEEARMF-AENNGLLFLETS 153
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G E+F + YY +A IIMFD+T++ ++KN W +D+ C IP +L
Sbjct: 60 TAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVC-----ENIPIVLC 114
Query: 62 ANKCDLPHRQVDINDIECFYKEHN 85
NK D+ R+V I F+++ N
Sbjct: 115 GNKVDVKERKVKAKTI-TFHRKKN 137
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 9/125 (7%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLK-WKKDVDLKCTLSDGSPIPCML 60
T G +F M R+ H I++F +T++ S + +K V +K ++ D IP ML
Sbjct: 63 TTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVED---IPVML 119
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNF 120
+ NKCD R+VD + + +E + ETS K +N ++K L L+ E +N
Sbjct: 120 VGNKCDETQREVDTREAQAVAQEWK-CAFMETSAK----MNYNVKELFQELLTLETRRNM 174
Query: 121 PNNDD 125
N D
Sbjct: 175 SLNID 179
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +TR YY+ A G ++++D+T++ ++ W D + + I +L
Sbjct: 66 TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS----QNIVIILC 121
Query: 62 ANKCDL-PHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSM 104
NK DL R+V + F +E+ + + ETS G V ++
Sbjct: 122 GNKKDLDADREVTFLEASRFAQENELM-FLETSALTGENVEEAF 164
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G+E ++ M Y + G + +F + N SF++ ++++ + + D +P +L+
Sbjct: 58 TAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
NKCDL R V+ + + + I + ETS K V D+ L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 50.4 bits (119), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE + M Y + G + +F + N SF++ ++++ + + D +P +L+
Sbjct: 58 TAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
NKCDL R V+ + + + I + ETS K V D+ L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G E ++ M Y + G + +F + N SF++ ++++ + + D +P +L+
Sbjct: 58 TAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
NKCDL R V+ + + + I + ETS K V D+ L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 50.1 bits (118), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +TR YY+ A G ++++D+T++ ++ W D + + I +L
Sbjct: 67 TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS----QNIVIILC 122
Query: 62 ANKCDL-PHRQVDINDIECFYKEHNFIGWTETSTKEG 97
NK DL R+V + F +E+ + + ETS G
Sbjct: 123 GNKKDLDADREVTFLEASRFAQENELM-FLETSALTG 158
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 2 TEGQERFT-WMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
T GQERF M + YY++ H + ++D+TN SF + W ++ +D IP +L
Sbjct: 76 TAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAND---IPRIL 132
Query: 61 LANKCDL 67
+ NKCDL
Sbjct: 133 VGNKCDL 139
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G ER+ +T YY+ A G +I++D++ +S++N W +L+ D + L+
Sbjct: 66 TAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWL--TELRENADDN--VAVGLI 121
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETST 94
NK DL H R V ++ + F E+ + +TETS
Sbjct: 122 GNKSDLAHLRAVPTDEAKNFAMENQML-FTETSA 154
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G E ++ M Y + G + +F + N SF++ ++++ + + D +P +L+
Sbjct: 58 TAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
NKCDL R V+ + + + I + ETS K V D+ L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G E ++ M Y + G + +F + N SF++ ++++ + + D +P +L+
Sbjct: 58 TAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
NKCDL R V+ + + + I + ETS K V D+ L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 8/103 (7%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSP-IPCML 60
T GQERF + +YY+ + II++D+T + +F W +++ G P I +
Sbjct: 61 TAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELR-----QHGPPSIVVAI 115
Query: 61 LANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
NKCDL R+V D + + + I + ETS K + +N+
Sbjct: 116 AGNKCDLTDVREVMERDAKDYADSIHAI-FVETSAKNAININE 157
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 49.3 bits (116), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 6/115 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE F+ M Y + G +I++ +T++ SF++ ++ + L + D P +L+
Sbjct: 73 TAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQ---LILRVKDRESFPMILV 129
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKE-GLMVNDSMKFLLDVLMRQ 114
ANK DL H R+V + + ++N I + ETS K+ L V+ + L+ V+ +Q
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYN-IPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G E ++ M Y + G + +F + N SF++ ++++ + + D +P +L+
Sbjct: 63 TAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 119
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
NKCDL R V+ + + + I + ETS K V D+ L+
Sbjct: 120 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 165
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 48.9 bits (115), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G E ++ M Y + G + +F + N SF++ ++++ + + D +P +L+
Sbjct: 58 TAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
NKCDL R V+ + + + I + ETS K V D+ L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 48.9 bits (115), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 8/68 (11%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGS--PIPCM 59
T GQERF + + Y++ A G ++++D+T + SF N +W VD+ + D + +P M
Sbjct: 84 TAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREW---VDM---IEDAAHETVPIM 137
Query: 60 LLANKCDL 67
L+ NK D+
Sbjct: 138 LVGNKADI 145
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 48.9 bits (115), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G E ++ M Y + G + +F + N SF++ ++++ + + D +P +L+
Sbjct: 58 TAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
NKCDL R V+ + + + I + ETS K V D+ L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 48.9 bits (115), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 6/115 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE F+ M Y + G +I++ +T++ SF++ ++ + L + D P +L+
Sbjct: 73 TAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQ---LILRVKDRESFPMILV 129
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKE-GLMVNDSMKFLLDVLMRQ 114
ANK DL H R+V + + ++N I + ETS K+ L V+ + L+ V+ +Q
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYN-IPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 48.9 bits (115), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 6/115 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE F+ M Y + G +I++ +T++ SF++ ++ + L + D P +L+
Sbjct: 68 TAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQ---LILRVKDRESFPMILV 124
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKE-GLMVNDSMKFLLDVLMRQ 114
ANK DL H R+V + + ++N I + ETS K+ L V+ + L+ V+ +Q
Sbjct: 125 ANKVDLMHLRKVTRDQGKEMATKYN-IPYIETSAKDPPLNVDKTFHDLVRVIRQQ 178
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 48.9 bits (115), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 63/115 (54%), Gaps = 6/115 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE F+ M Y + G +I++ +T++ SF++ ++ + L + D P +L+
Sbjct: 73 TAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQ---LILRVKDRESFPMILV 129
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKE-GLMVNDSMKFLLDVLMRQ 114
ANK DL H R+V + + ++N I + ETS K+ L V+ + L+ V+ +Q
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYN-IPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G E ++ M Y + G + +F + N SF++ ++++ + + D +P +L+
Sbjct: 58 TAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
NKCDL R V+ + + + I + ETS K V D+ L+
Sbjct: 115 GNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE ++ M Y + G + +F + N SF++ ++++ + + D +P +L+
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
NK DL R V+ + + + I + ETS K V D+ L+
Sbjct: 115 GNKSDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE ++ M Y + G + +F + N SF++ ++++ + + D +P +L+
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
NK DL R V+ + + + I + ETS K V D+ L+
Sbjct: 115 GNKSDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLV 160
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G E+FT M +Y K+ G +++ +T Q++F + ++ + + D +P +L+
Sbjct: 58 TAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQI---LRVKDTDDVPMILV 114
Query: 62 ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
NKCDL R V + ++ N + E+S K + VN+
Sbjct: 115 GNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNE 156
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G E+FT M +Y K+ G +++ +T Q++F + ++ + + D +P +L+
Sbjct: 60 TAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQI---LRVKDTDDVPMILV 116
Query: 62 ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
NKCDL R V + ++ N + E+S K + VN+
Sbjct: 117 GNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNE 158
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 2 TEGQERFT-WMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
T GQERF M + YY++ H + ++D TN SF + W ++ +D IP +L
Sbjct: 85 TAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLAND---IPRIL 141
Query: 61 LANKCDL 67
+ NKCDL
Sbjct: 142 VGNKCDL 148
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE+ + VYY A G I+ FD+T++ + +N +W K+ G+ P ++
Sbjct: 68 TAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVV----GNEAPIVVC 123
Query: 62 ANKCDLPHRQ 71
ANK D+ +RQ
Sbjct: 124 ANKIDIKNRQ 133
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G ERF +TR YY+ A G ++++D+T++ ++ W D + + I +L
Sbjct: 64 TAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS----QNIVIILC 119
Query: 62 ANKCDL-PHRQVDINDIECFYKEHNFIGWTETSTKEG 97
NK DL R+V + F +E+ + + ETS G
Sbjct: 120 GNKKDLDADREVTFLEASRFAQENELM-FLETSALTG 155
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSP-IPCML 60
T G ERF + +YY+ + II++D+T + +F W +++ G P I +
Sbjct: 62 TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELR-----QHGPPSIVVAI 116
Query: 61 LANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
NKCDL R+V D + + + I + ETS K + +N+
Sbjct: 117 AGNKCDLTDVREVMERDAKDYADSIHAI-FVETSAKNAININE 158
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G E+FT M +Y K+ G +++ +T Q++F + ++ + + D +P +L+
Sbjct: 58 TAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQI---LRVKDTEDVPMILV 114
Query: 62 ANKCDLPHRQV 72
NKCDL +V
Sbjct: 115 GNKCDLEDERV 125
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G E+FT M +Y K+ G +++ +T Q++F + ++ + + D +P +L+
Sbjct: 58 TAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQI---LRVKDTEDVPMILV 114
Query: 62 ANKCDLPHRQV 72
NKCDL +V
Sbjct: 115 GNKCDLEDERV 125
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE + + Y++ G + +F +T SF T +++ + + + +P +L+
Sbjct: 73 TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI---LRVKEDENVPFLLV 129
Query: 62 ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTK 95
NK DL RQV + + + ++ N + + ETS K
Sbjct: 130 GNKSDLEDKRQVSVEEAKNRAEQWN-VNYVETSAK 163
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE + + Y++ G + +F +T SF T +++ + + + +P +L+
Sbjct: 61 TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI---LRVKEDENVPFLLV 117
Query: 62 ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTK 95
NK DL RQV + + + ++ N + + ETS K
Sbjct: 118 GNKSDLEDKRQVSVEEAKNRAEQWN-VNYVETSAK 151
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE + + Y++ G + +F +T SF T +++ + + + +P +L+
Sbjct: 69 TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI---LRVKEDENVPFLLV 125
Query: 62 ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTK 95
NK DL RQV + + + ++ N + + ETS K
Sbjct: 126 GNKSDLEDKRQVSVEEAKNRAEQWN-VNYVETSAK 159
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE + + Y++ G + +F +T SF T +++ + + + +P +L+
Sbjct: 59 TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI---LRVKEDENVPFLLV 115
Query: 62 ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTK 95
NK DL RQV + + + + N + + ETS K
Sbjct: 116 GNKSDLEDKRQVSVEEAKNRADQWN-VNYVETSAK 149
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G E+F M +Y K+ G I+++ L NQ SF++ +K +D ++ + +P +L+
Sbjct: 58 TAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQD-IKPMRDQIIRVKRYE--KVPVILV 114
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
NK DL + + E + ETS K MV++
Sbjct: 115 GNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDE 155
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 8/116 (6%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLK--WKKDVDLKCTLSDGSPIPCM 59
T G +F M R+ H I+++ +T++ S + LK +++ ++K D IP M
Sbjct: 58 TTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEE-LKPIYEQICEIK---GDVESIPIM 113
Query: 60 LLANKCD-LPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
L+ NKCD P R+V ++ E + + ETS K V + + LL++ R+
Sbjct: 114 LVGNKCDESPSREVQSSEAEALARTWK-CAFMETSAKLNHNVKELFQELLNLEKRR 168
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 6/67 (8%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQ+ + + ++Y DA ++ FD+T+ NSF N +W +V+ C +P ++
Sbjct: 89 TAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC-----KKVPIIV 143
Query: 61 LANKCDL 67
+ K DL
Sbjct: 144 VGCKTDL 150
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 15 YYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69
Y A G ++++D+TN SF+N W V S+ P+ L+ NK DL H
Sbjct: 76 YIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPL-VALVGNKIDLEH 129
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 34.3 bits (77), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDG---SPIPC 58
T GQ+ ++ + + HG ++++ +T+ +SF+ L L +G + +P
Sbjct: 79 TAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVI------ESLYQKLHEGHGKTRVPV 132
Query: 59 MLLANKCDL-PHRQVD 73
+L+ NK DL P R+V
Sbjct: 133 VLVGNKADLSPEREVQ 148
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 33.9 bits (76), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGS-PIPCML 60
T G + + Y+ + I++FD+++ SF++ W + LK D P+ +L
Sbjct: 80 TAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFE--LLKSARPDRERPLRAVL 137
Query: 61 LANKCDLPHRQ 71
+ANK DLP ++
Sbjct: 138 VANKTDLPPQR 148
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 33.1 bits (74), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNT-LKWKKDVDLKCTLSDGSPIPCML 60
T GQ+ ++ + Y D +G I+++ +T+ SF+ + K +D+ + IP ML
Sbjct: 56 TAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ----IPIML 111
Query: 61 LANKCDLPHRQV 72
+ NK DL +V
Sbjct: 112 VGNKKDLHMERV 123
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 33.1 bits (74), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNT-LKWKKDVDLKCTLSDGSPIPCML 60
T GQ+ ++ + Y D +G I+++ +T+ SF+ + K +D+ + IP ML
Sbjct: 61 TAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ----IPIML 116
Query: 61 LANKCDLPHRQV 72
+ NK DL +V
Sbjct: 117 VGNKKDLHMERV 128
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 33.1 bits (74), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNT-LKWKKDVDLKCTLSDGSPIPCML 60
T GQ+ ++ + Y D +G I+++ +T+ SF+ + K +D+ + IP ML
Sbjct: 59 TAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ----IPIML 114
Query: 61 LANKCDLPHRQV 72
+ NK DL +V
Sbjct: 115 VGNKKDLHMERV 126
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 33.1 bits (74), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 16/143 (11%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y ++ F + + +SF+N KW ++ C + P +L
Sbjct: 61 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-----PFLL 115
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVND--SMKFLLDVLMRQEGLQ 118
+ + DL + D + IE K ET+ K + D ++K++ + Q+GL+
Sbjct: 116 VGTQIDL---RDDPSTIEKLAKNKQKPITPETAEK---LARDLKAVKYVECSALTQKGLK 169
Query: 119 NFPNNDDENMVKLSGPAPKVEKK 141
N D+ + L P PK ++
Sbjct: 170 NV--FDEAILAALEPPEPKKSRR 190
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 33.1 bits (74), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 16/143 (11%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y ++ F + + +SF+N KW ++ C + P +L
Sbjct: 65 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-----PFLL 119
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVND--SMKFLLDVLMRQEGLQ 118
+ + DL + D + IE K ET+ K + D ++K++ + Q+GL+
Sbjct: 120 VGTQIDL---RDDPSTIEKLAKNKQKPITPETAEK---LARDLKAVKYVECSALTQKGLK 173
Query: 119 NFPNNDDENMVKLSGPAPKVEKK 141
N D+ + L P PK ++
Sbjct: 174 NV--FDEAILAALEPPEPKKSRR 194
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 32.7 bits (73), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNT-LKWKKDVDLKCTLSDGSPIPCML 60
T GQ+ ++ + Y D +G I+++ +T+ SF+ + K +D+ + IP ML
Sbjct: 61 TAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ----IPIML 116
Query: 61 LANKCDLPHRQV 72
+ NK DL +V
Sbjct: 117 VGNKKDLHMERV 128
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 32.7 bits (73), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 16/143 (11%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y ++ F + + +SF+N KW ++ C + P +L
Sbjct: 65 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-----PFLL 119
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVND--SMKFLLDVLMRQEGLQ 118
+ + DL + D + IE K ET+ K + D ++K++ + Q+GL+
Sbjct: 120 VGTQIDL---RDDPSTIEKLAKNKQKPITPETAEK---LARDLKAVKYVECSALTQKGLK 173
Query: 119 NFPNNDDENMVKLSGPAPKVEKK 141
N D+ + L P PK ++
Sbjct: 174 NV--FDEAILAALEPPEPKKSRR 194
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 32.7 bits (73), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 16/143 (11%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y ++ F + + +SF+N KW ++ C + P +L
Sbjct: 58 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-----PFLL 112
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVND--SMKFLLDVLMRQEGLQ 118
+ + DL + D + IE K ET+ K + D ++K++ + Q+GL+
Sbjct: 113 VGTQIDL---RDDPSTIEKLAKNKQKPITPETAEK---LARDLKAVKYVECSALTQKGLK 166
Query: 119 NFPNNDDENMVKLSGPAPKVEKK 141
N D+ + L P PK ++
Sbjct: 167 NV--FDEAILAALEPPEPKKSRR 187
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 32.7 bits (73), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 16/143 (11%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y ++ F + + +SF+N KW ++ C + P +L
Sbjct: 61 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-----PFLL 115
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVND--SMKFLLDVLMRQEGLQ 118
+ + DL + D + IE K ET+ K + D ++K++ + Q+GL+
Sbjct: 116 VGTQIDL---RDDPSTIEKLAKNKQKPITPETAEK---LARDLKAVKYVECSALTQKGLK 169
Query: 119 NFPNNDDENMVKLSGPAPKVEKK 141
N D+ + L P PK ++
Sbjct: 170 NV--FDEAILAALEPPEPKKSRR 190
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 32.7 bits (73), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 16/143 (11%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y ++ F + + +SF+N KW ++ C + P +L
Sbjct: 60 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-----PFLL 114
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVND--SMKFLLDVLMRQEGLQ 118
+ + DL + D + IE K ET+ K + D ++K++ + Q+GL+
Sbjct: 115 VGTQIDL---RDDPSTIEKLAKNKQKPITPETAEK---LARDLKAVKYVECSALTQKGLK 168
Query: 119 NFPNNDDENMVKLSGPAPKVEKK 141
N D+ + L P PK ++
Sbjct: 169 NV--FDEAILAALEPPEPKKSRR 189
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 32.7 bits (73), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 16/143 (11%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y ++ F + + +SF+N KW ++ C + P +L
Sbjct: 58 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-----PFLL 112
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVND--SMKFLLDVLMRQEGLQ 118
+ + DL + D + IE K ET+ K + D ++K++ + Q+GL+
Sbjct: 113 VGTQIDL---RDDPSTIEKLAKNKQKPITPETAEK---LARDLKAVKYVECSALTQKGLK 166
Query: 119 NFPNNDDENMVKLSGPAPKVEKK 141
N D+ + L P PK ++
Sbjct: 167 NV--FDEAILAALEPPEPKKSRR 187
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 32.7 bits (73), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 16/143 (11%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y ++ F + + +SF+N KW ++ C + P +L
Sbjct: 58 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-----PFLL 112
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVND--SMKFLLDVLMRQEGLQ 118
+ + DL + D + IE K ET+ K + D ++K++ + Q+GL+
Sbjct: 113 VGTQIDL---RDDPSTIEKLAKNKQKPITPETAEK---LARDLKAVKYVECSALTQKGLK 166
Query: 119 NFPNNDDENMVKLSGPAPKVEKK 141
N D+ + L P PK ++
Sbjct: 167 NV--FDEAILAALEPPEPKKSRR 187
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 32.7 bits (73), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 16/143 (11%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y ++ F + + +SF+N KW ++ C + P +L
Sbjct: 59 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-----PFLL 113
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVND--SMKFLLDVLMRQEGLQ 118
+ + DL + D + IE K ET+ K + D ++K++ + Q+GL+
Sbjct: 114 VGTQIDL---RDDPSTIEKLAKNKQKPITPETAEK---LARDLKAVKYVECSALTQKGLK 167
Query: 119 NFPNNDDENMVKLSGPAPKVEKK 141
N D+ + L P PK ++
Sbjct: 168 NV--FDEAILAALEPPEPKKSRR 188
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 32.3 bits (72), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 16/143 (11%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y ++ F + + +SF+N KW ++ C + P +L
Sbjct: 58 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-----PFLL 112
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVND--SMKFLLDVLMRQEGLQ 118
+ + DL + D + IE K ET+ K + D ++K++ + Q+GL+
Sbjct: 113 VGTQIDL---RDDPSTIEKLAKNKQKPITPETAEK---LARDLKAVKYVECSALTQKGLK 166
Query: 119 NFPNNDDENMVKLSGPAPKVEKK 141
N D+ + L P PK ++
Sbjct: 167 NV--FDEAILAALEPPEPKKSRR 187
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 32.3 bits (72), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 16/143 (11%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y ++ F + + +SF+N KW ++ C + P +L
Sbjct: 58 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-----PFLL 112
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVND--SMKFLLDVLMRQEGLQ 118
+ + DL + D + IE K ET+ K + D ++K++ + Q+GL+
Sbjct: 113 VGTQIDL---RDDPSTIEKLAKNKQKPITPETAEK---LARDLKAVKYVECSALTQKGLK 166
Query: 119 NFPNNDDENMVKLSGPAPKVEKK 141
N D+ + L P PK ++
Sbjct: 167 NV--FDEAILAALEPPEPKKSRR 187
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE T + + G ++++D+T++ SF+ L K +D + + +L+
Sbjct: 83 TAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILD---EIKKPKNVTLILV 138
Query: 62 ANKCDLPH-RQVDINDIE 78
NK DL H RQV + E
Sbjct: 139 GNKADLDHSRQVSTEEGE 156
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 16/139 (11%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y ++ F + + +SF+N KW ++ C + P +L
Sbjct: 68 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-----PFLL 122
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVND--SMKFLLDVLMRQEGLQ 118
+ + DL + D + IE K ET+ K + D ++K++ + Q+GL+
Sbjct: 123 VGTQIDL---RDDPSTIEKLAKNKQKPITPETAEK---LARDLKAVKYVECSALTQKGLK 176
Query: 119 NFPNNDDENMVKLSGPAPK 137
N D+ + L P PK
Sbjct: 177 NV--FDEAILAALEPPEPK 193
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 19/145 (13%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNT-LKWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y +I F L + SF+N KW +V C + P +L
Sbjct: 58 TAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNT-----PIIL 112
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVN---DSMKFLLDVLMRQEGL 117
+ K DL + D + IE KE T + +GL + ++K+L + Q GL
Sbjct: 113 VGTKLDL---RDDKDTIEKL-KEKKL---TPITYPQGLAMAKEIGAVKYLECSALTQRGL 165
Query: 118 QNFPNNDDENMVKLSGPAPKVEKKE 142
+ DE + + P P ++K
Sbjct: 166 KTV---FDEAIRAVLCPPPVKKRKR 187
>pdb|2DU3|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase Complexed With Trnacys
And O-Phosphoserine
pdb|2DU3|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase Complexed With Trnacys
And O-Phosphoserine
pdb|2DU4|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase Complexed With Trnacys
pdb|2DU4|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase Complexed With Trnacys
Length = 534
Score = 30.4 bits (67), Expect = 0.37, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 11/114 (9%)
Query: 34 FKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKE--------HN 85
FK + L+ ++ G I +A+K LP + I+ CF +E +
Sbjct: 171 FKELKPISSTLTLRSHMTTGWFITLSHIADKLPLPIKLFSID--RCFRREQGEDATRLYT 228
Query: 86 FIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFPNNDDENMVKLSGPAPKVE 139
+ + E L V+D K + + L+RQ G +NF DE K P + E
Sbjct: 229 YFSASCVLVDEELSVDDG-KAVAEALLRQFGFENFRFRKDEKRSKYYIPDTQTE 281
>pdb|2DU5|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase E418nE420N MUTANT
COMPLEXED WITH TRNAOPAL And O-Phosphoserine ("opal
Complex")
pdb|2DU5|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase E418nE420N MUTANT
COMPLEXED WITH TRNAOPAL And O-Phosphoserine ("opal
Complex")
pdb|2DU6|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase E418nE420N MUTANT
COMPLEXED WITH TRNAAMBER And O-Phosphoserine ("amber
Complex")
pdb|2DU6|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus
O-Phosphoseryl- Trna Synthetase E418nE420N MUTANT
COMPLEXED WITH TRNAAMBER And O-Phosphoserine ("amber
Complex")
Length = 534
Score = 30.4 bits (67), Expect = 0.37, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 11/114 (9%)
Query: 34 FKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKE--------HN 85
FK + L+ ++ G I +A+K LP + I+ CF +E +
Sbjct: 171 FKELKPISSTLTLRSHMTTGWFITLSHIADKLPLPIKLFSID--RCFRREQGEDATRLYT 228
Query: 86 FIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFPNNDDENMVKLSGPAPKVE 139
+ + E L V+D K + + L+RQ G +NF DE K P + E
Sbjct: 229 YFSASCVLVDEELSVDDG-KAVAEALLRQFGFENFRFRKDEKRSKYYIPDTQTE 281
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 30.4 bits (67), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 19/139 (13%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNT-LKWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y +I F L + SF+N KW +V C + P +L
Sbjct: 60 TAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNT-----PIIL 114
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVN---DSMKFLLDVLMRQEGL 117
+ K DL + D + IE KE T + +GL + ++K+L + Q GL
Sbjct: 115 VGTKLDL---RDDKDTIEKL-KEKKL---TPITYPQGLAMAKEIGAVKYLECSALTQRGL 167
Query: 118 QNFPNNDDENMVKLSGPAP 136
+ DE + + P P
Sbjct: 168 KTV---FDEAIRAVLCPPP 183
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 30.0 bits (66), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 13/104 (12%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y D++ +I F + +S +N KW +V C +P +L
Sbjct: 65 TAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFC-----QGVPIIL 119
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSM 104
+ K DL + D IE +E G +++EG V D +
Sbjct: 120 VGCKVDLRN---DPQTIEQLRQE----GQQPVTSQEGQSVADQI 156
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 30.0 bits (66), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 19/145 (13%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNT-LKWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y +I F L + SF+N KW +V C + P +L
Sbjct: 58 TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-----PIIL 112
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVN---DSMKFLLDVLMRQEGL 117
+ K DL + D + IE KE T + +GL + ++K+L + Q GL
Sbjct: 113 VGTKLDL---RDDKDTIEKL-KEKKL---TPITYPQGLAMAKEIGAVKYLECSALTQRGL 165
Query: 118 QNFPNNDDENMVKLSGPAPKVEKKE 142
+ DE + + P P ++K
Sbjct: 166 KTV---FDEAIRAVLCPPPVKKRKR 187
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 30.0 bits (66), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 19/139 (13%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNT-LKWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y +I F L + SF+N KW +V C + P +L
Sbjct: 58 TAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNT-----PIIL 112
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVN---DSMKFLLDVLMRQEGL 117
+ K DL + D + IE KE T + +GL + ++K+L + Q GL
Sbjct: 113 VGTKLDL---RDDKDTIEKL-KEKKL---TPITYPQGLAMAKEIGAVKYLECSALTQRGL 165
Query: 118 QNFPNNDDENMVKLSGPAP 136
+ DE + + P P
Sbjct: 166 KTV---FDEAIRAVLCPPP 181
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 30.0 bits (66), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 19/139 (13%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNT-LKWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y +I F L + SF+N KW +V C + P +L
Sbjct: 62 TAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNT-----PIIL 116
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVN---DSMKFLLDVLMRQEGL 117
+ K DL + D + IE KE T + +GL + ++K+L + Q GL
Sbjct: 117 VGTKLDL---RDDKDTIEKL-KEKKL---TPITYPQGLAMAKEIGAVKYLECSALTQRGL 169
Query: 118 QNFPNNDDENMVKLSGPAP 136
+ DE + + P P
Sbjct: 170 KTV---FDEAIRAVLCPPP 185
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 30.0 bits (66), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNT-LKWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y +I F L + SF+N KW +V C + P +L
Sbjct: 59 TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHT-----PILL 113
Query: 61 LANKCDL 67
+ K DL
Sbjct: 114 VGTKLDL 120
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 30.0 bits (66), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNT-LKWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y +I F L + SF+N KW +V C + P +L
Sbjct: 59 TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHT-----PILL 113
Query: 61 LANKCDL 67
+ K DL
Sbjct: 114 VGTKLDL 120
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 29.6 bits (65), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y D ++ F + + +S +N KW +V C +P +L
Sbjct: 80 TAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-----PNVPIIL 134
Query: 61 LANKCDL 67
+ANK DL
Sbjct: 135 VANKKDL 141
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 29.6 bits (65), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNT-LKWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y +I F L + SF+N KW +V C + P +L
Sbjct: 58 TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHT-----PILL 112
Query: 61 LANKCDL 67
+ K DL
Sbjct: 113 VGTKLDL 119
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 29.3 bits (64), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNT-LKWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y +I F L + SF+N KW +V C + P +L
Sbjct: 85 TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-----PIIL 139
Query: 61 LANKCDL 67
+ K DL
Sbjct: 140 VGTKLDL 146
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 29.3 bits (64), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 59/139 (42%), Gaps = 19/139 (13%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNT-LKWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y +I F L + SF+N KW +V C + P +L
Sbjct: 58 TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-----PIIL 112
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVN---DSMKFLLDVLMRQEGL 117
+ K DL + D + IE KE T + +GL + ++K+L + Q GL
Sbjct: 113 VGTKLDL---RDDKDTIEKL-KEKKL---TPITYPQGLAMAKEIGAVKYLECSALTQRGL 165
Query: 118 QNFPNNDDENMVKLSGPAP 136
+ DE + + P P
Sbjct: 166 KTV---FDEAIRAVLCPPP 181
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 29.3 bits (64), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNT-LKWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y +I F L + SF+N KW +V C + P +L
Sbjct: 85 TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-----PIIL 139
Query: 61 LANKCDL 67
+ K DL
Sbjct: 140 VGTKLDL 146
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 29.3 bits (64), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNT-LKWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y +I F L + SF+N KW +V C + P +L
Sbjct: 58 TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-----PIIL 112
Query: 61 LANKCDL 67
+ K DL
Sbjct: 113 VGTKLDL 119
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 29.3 bits (64), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNT-LKWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y +I F L + SF+N KW +V C + P +L
Sbjct: 65 TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-----PIIL 119
Query: 61 LANKCDL 67
+ K DL
Sbjct: 120 VGTKLDL 126
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 29.3 bits (64), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNT-LKWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y +I F L + SF+N KW +V C + P +L
Sbjct: 58 TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-----PIIL 112
Query: 61 LANKCDL 67
+ K DL
Sbjct: 113 VGTKLDL 119
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 29.3 bits (64), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y D ++ F + + +S +N KW +V C +P +L
Sbjct: 64 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIIL 118
Query: 61 LANKCDL 67
+ NK DL
Sbjct: 119 VGNKKDL 125
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 29.3 bits (64), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNT-LKWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y +I F L + SF+N KW +V C + P +L
Sbjct: 58 TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-----PIIL 112
Query: 61 LANKCDL 67
+ K DL
Sbjct: 113 VGTKLDL 119
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 29.3 bits (64), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNT-LKWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y +I F L + SF+N KW +V C + P +L
Sbjct: 58 TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-----PIIL 112
Query: 61 LANKCDL 67
+ K DL
Sbjct: 113 VGTKLDL 119
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 28.9 bits (63), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y D ++ F + + +S +N KW +V C +P +L
Sbjct: 58 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIIL 112
Query: 61 LANKCDL 67
+ NK DL
Sbjct: 113 VGNKKDL 119
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 28.9 bits (63), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKN-TLKWKKDV 44
T GQE + + + Y D+ ++ F + N+ SF N + KW+ ++
Sbjct: 78 TAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEI 121
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 28.9 bits (63), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNT-LKWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y +I F L + SF+N KW +V C + P +L
Sbjct: 77 TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-----PIIL 131
Query: 61 LANKCDL 67
+ K DL
Sbjct: 132 VGTKLDL 138
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 28.9 bits (63), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y D ++ F + + +S +N KW +V C +P +L
Sbjct: 62 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIIL 116
Query: 61 LANKCDL 67
+ NK DL
Sbjct: 117 VGNKKDL 123
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 28.9 bits (63), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y D ++ F + + +S +N KW +V C +P +L
Sbjct: 58 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIIL 112
Query: 61 LANKCDL 67
+ NK DL
Sbjct: 113 VGNKKDL 119
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 28.9 bits (63), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNT-LKWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y +I F L + SF+N KW +V C + P +L
Sbjct: 68 TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNT-----PIIL 122
Query: 61 LANKCDL 67
+ K DL
Sbjct: 123 VGTKLDL 129
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 28.9 bits (63), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y D ++ F + + +S +N KW +V C +P +L
Sbjct: 61 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIIL 115
Query: 61 LANKCDL 67
+ NK DL
Sbjct: 116 VGNKKDL 122
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 28.9 bits (63), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y D ++ F + + +S +N KW +V C +P +L
Sbjct: 60 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIIL 114
Query: 61 LANKCDL 67
+ NK DL
Sbjct: 115 VGNKKDL 121
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 28.9 bits (63), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y D ++ F + + +S +N KW +V C +P +L
Sbjct: 80 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIIL 134
Query: 61 LANKCDL 67
+ NK DL
Sbjct: 135 VGNKKDL 141
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y D ++ F + + +S +N KW +V C +P +L
Sbjct: 61 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIIL 115
Query: 61 LANKCDL 67
+ NK DL
Sbjct: 116 VGNKKDL 122
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y D ++ F + + +S +N KW +V C +P +L
Sbjct: 62 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIIL 116
Query: 61 LANKCDL 67
+ NK DL
Sbjct: 117 VGNKKDL 123
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKN-TLKWKKDV 44
T GQE + + + Y D+ ++ F + N+ SF N + KW+ ++
Sbjct: 77 TAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEI 120
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y D ++ F + + +S +N KW +V C +P +L
Sbjct: 60 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIIL 114
Query: 61 LANKCDL 67
+ NK DL
Sbjct: 115 VGNKKDL 121
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 4 GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
GQ RF M Y + + M D +Q + + ++ K L IP ++L N
Sbjct: 76 GQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQG---IPVLVLGN 132
Query: 64 KCDLP 68
K DLP
Sbjct: 133 KRDLP 137
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y D ++ F + + +S +N KW +V C +P +L
Sbjct: 60 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIIL 114
Query: 61 LANKCDL 67
+ NK DL
Sbjct: 115 VGNKKDL 121
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y D ++ F + + +S +N KW +V C +P +L
Sbjct: 62 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIIL 116
Query: 61 LANKCDL 67
+ NK DL
Sbjct: 117 VGNKKDL 123
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y D ++ F + + +S +N KW +V C +P +L
Sbjct: 63 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIIL 117
Query: 61 LANKCDL 67
+ NK DL
Sbjct: 118 VGNKKDL 124
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y D ++ F + + +S +N KW +V C +P +L
Sbjct: 60 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIIL 114
Query: 61 LANKCDL 67
+ NK DL
Sbjct: 115 VGNKKDL 121
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y D ++ F + + +S +N KW +V C +P +L
Sbjct: 60 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIIL 114
Query: 61 LANKCDL 67
+ NK DL
Sbjct: 115 VGNKKDL 121
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 4 GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
GQ RF M Y + + + M D ++ + + ++ K L IP ++L N
Sbjct: 76 GQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQG---IPVLVLGN 132
Query: 64 KCDLPH 69
K DLP+
Sbjct: 133 KRDLPN 138
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 5 QERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANK 64
Q R W + Y+ + +G + + D + F + ++D +++ +P ++L NK
Sbjct: 57 QARRLW--KDYFPEVNGIVFLVDAADPERFDEA---RVELDALFNIAELKDVPFVILGNK 111
Query: 65 CDLPH 69
D P+
Sbjct: 112 IDAPN 116
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 28.1 bits (61), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 14/121 (11%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y ++ F + + +SF+N KW ++ C + P +L
Sbjct: 62 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-----PFLL 116
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVND--SMKFLLDVLMRQEGLQ 118
+ + DL + D + IE K ET+ K + D ++K++ + Q+GL+
Sbjct: 117 VGTQIDL---RDDPSTIEKLAKNKQKPITPETAEK---LARDLKAVKYVECSALTQKGLK 170
Query: 119 N 119
N
Sbjct: 171 N 171
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 4 GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
GQ RF M Y + + M D +Q + + ++ K L IP ++L N
Sbjct: 85 GQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQG---IPVLVLGN 141
Query: 64 KCDLP 68
K DLP
Sbjct: 142 KRDLP 146
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 5 QERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANK 64
Q R W + Y+ + +G + + D + F + ++D +++ +P ++L NK
Sbjct: 79 QARRLW--KDYFPEVNGIVFLVDAADPERFDEA---RVELDALFNIAELKDVPFVILGNK 133
Query: 65 CDLPH 69
D P+
Sbjct: 134 IDAPN 138
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 14/121 (11%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y ++ F + + +SF+N KW ++ C + P +L
Sbjct: 58 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-----PFLL 112
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVND--SMKFLLDVLMRQEGLQ 118
+ + DL + D + IE K ET+ K + D ++K++ + Q+GL+
Sbjct: 113 VGTQIDL---RDDPSTIEKLAKNKQKPITPETAEK---LARDLKAVKYVECSALTQKGLK 166
Query: 119 N 119
N
Sbjct: 167 N 167
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 27.7 bits (60), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 14/121 (11%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y ++ F + + +SF+N KW ++ C + P +L
Sbjct: 58 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-----PFLL 112
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVND--SMKFLLDVLMRQEGLQ 118
+ + DL + D + IE K ET+ K + D ++K++ + Q+GL+
Sbjct: 113 VGTQIDL---RDDPSTIEKLAKNKQKPITPETAEK---LARDLKAVKYVECSALTQKGLK 166
Query: 119 N 119
N
Sbjct: 167 N 167
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 14/121 (11%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y ++ F + + +SF+N KW ++ C + P +L
Sbjct: 58 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-----PFLL 112
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVND--SMKFLLDVLMRQEGLQ 118
+ + DL + D + IE K ET+ K + D ++K++ + Q GL+
Sbjct: 113 VGTQIDL---RDDPSTIEKLAKNKQKPITPETAEK---LARDLKAVKYVECSALTQRGLK 166
Query: 119 N 119
N
Sbjct: 167 N 167
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 14/121 (11%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y ++ F + + +SF+N KW ++ C + P +L
Sbjct: 58 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-----PFLL 112
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVND--SMKFLLDVLMRQEGLQ 118
+ + DL + D + IE K ET+ K + D ++K++ + Q+GL+
Sbjct: 113 VGTQIDL---RDDPSTIEKLAKNKQKPITPETAEK---LARDLKAVKYVECSALTQKGLK 166
Query: 119 N 119
N
Sbjct: 167 N 167
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 14/121 (11%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y ++ F + + +SF+N KW ++ C + P +L
Sbjct: 60 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-----PFLL 114
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVND--SMKFLLDVLMRQEGLQ 118
+ + DL + D + IE K ET+ K + D ++K++ + Q+GL+
Sbjct: 115 VGTQIDL---RDDPSTIEKLAKNKQKPITPETAEK---LARDLKAVKYVECSALTQKGLK 168
Query: 119 N 119
N
Sbjct: 169 N 169
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 14/121 (11%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y ++ F + + +SF+N KW ++ C + P +L
Sbjct: 58 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-----PFLL 112
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVND--SMKFLLDVLMRQEGLQ 118
+ + DL + D + IE K ET+ K + D ++K++ + Q+GL+
Sbjct: 113 VGTQIDL---RDDPSTIEKLAKNKQKPITPETAEK---LARDLKAVKYVECSALTQKGLK 166
Query: 119 N 119
N
Sbjct: 167 N 167
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 14/121 (11%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y ++ F + + +SF+N KW ++ C + P +L
Sbjct: 58 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-----PFLL 112
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVND--SMKFLLDVLMRQEGLQ 118
+ + DL + D + IE K ET+ K + D ++K++ + Q+GL+
Sbjct: 113 VGTQIDL---RDDPSTIEKLAKNKQKPITPETAEK---LARDLKAVKYVECSALTQKGLK 166
Query: 119 N 119
N
Sbjct: 167 N 167
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 27.3 bits (59), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 14/121 (11%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y ++ F + + +SF+N KW ++ C + P +L
Sbjct: 58 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKT-----PFLL 112
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVND--SMKFLLDVLMRQEGLQ 118
+ + DL + D + IE K ET+ K + D ++K++ + Q GL+
Sbjct: 113 VGTQIDL---RDDPSTIEKLAKNKQKPITPETAEK---LARDLKAVKYVECSALTQRGLK 166
Query: 119 N 119
N
Sbjct: 167 N 167
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKN-TLKWKKDVDLKCTLSDGSPIPCML 60
T GQ+ F + + Y + ++ F + + +SF+N + KW ++ C + P +L
Sbjct: 75 TAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKA-----PIIL 129
Query: 61 LANKCDL 67
+ + DL
Sbjct: 130 VGTQSDL 136
>pdb|2CAR|A Chain A, Crystal Structure Of Human Inosine Triphosphatase
pdb|2CAR|B Chain B, Crystal Structure Of Human Inosine Triphosphatase
pdb|2J4E|A Chain A, The Itp Complex Of Human Inosine Triphosphatase
pdb|2J4E|B Chain B, The Itp Complex Of Human Inosine Triphosphatase
pdb|2J4E|C Chain C, The Itp Complex Of Human Inosine Triphosphatase
pdb|2J4E|D Chain D, The Itp Complex Of Human Inosine Triphosphatase
pdb|2J4E|E Chain E, The Itp Complex Of Human Inosine Triphosphatase
pdb|2J4E|F Chain F, The Itp Complex Of Human Inosine Triphosphatase
pdb|2J4E|G Chain G, The Itp Complex Of Human Inosine Triphosphatase
pdb|2J4E|H Chain H, The Itp Complex Of Human Inosine Triphosphatase
Length = 196
Score = 26.6 bits (57), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 53 GSPIPCMLLANKCDLPHRQVDINDI 77
G PC L+A K DLP Q + ++I
Sbjct: 30 GDKFPCTLVAQKIDLPEYQGEPDEI 54
>pdb|2I5D|A Chain A, Crystal Structure Of Human Inosine Triphosphate
Pyrophosphatase
Length = 197
Score = 26.2 bits (56), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 53 GSPIPCMLLANKCDLPHRQVDINDI 77
G PC L+A K DLP Q + ++I
Sbjct: 31 GDKFPCTLVAQKIDLPEYQGEPDEI 55
>pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
pdb|2FA9|B Chain B, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight
Into The Coat-controlled Gtp Hydrolysis In The
Disassembly Of Cop Ii
Length = 189
Score = 26.2 bits (56), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 6/110 (5%)
Query: 5 QERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANK 64
Q R W + Y +G + + D + L+ K+++D T + +P ++L NK
Sbjct: 72 QARRVW--KNYLPAINGIVFLVDCADHERL---LESKEELDSLMTDETIANVPILILGNK 126
Query: 65 CDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
D P + E F G S KE L F+ VL RQ
Sbjct: 127 IDRPEAISEERLREMFGLYGQTTGKGSVSLKE-LNARPLEVFMCSVLKRQ 175
>pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
pdb|2FMX|B Chain B, An Open Conformation Of Switch I Revealed By Sar1-gdp
Crystal Structure At Low Mg(2+)
Length = 195
Score = 26.2 bits (56), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 6/110 (5%)
Query: 5 QERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANK 64
Q R W + Y +G + + D + L+ K+++D T + +P ++L NK
Sbjct: 78 QARRVW--KNYLPAINGIVFLVDCADHERL---LESKEELDSLMTDETIANVPILILGNK 132
Query: 65 CDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
D P + E F G S KE L F+ VL RQ
Sbjct: 133 IDRPEAISEERLREMFGLYGQTTGKGSVSLKE-LNARPLEVFMCSVLKRQ 181
>pdb|3CC9|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3EZ3|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3PH7|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3RBM|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RYW|A Chain A, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|B Chain B, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|C Chain C, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|D Chain D, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
Length = 396
Score = 26.2 bits (56), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 23 IIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDI 77
+I L N++ + + + +D LK + G + + ++K HR++D+N+I
Sbjct: 166 LIEIYLRNESCYVDVIATFRDATLKTII--GQHLDTNIFSDKYSDAHREIDVNNI 218
>pdb|3MAV|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
Length = 395
Score = 26.2 bits (56), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/55 (23%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 23 IIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDI 77
+I L N++ + + + +D LK + G + + ++K HR++D+N+I
Sbjct: 165 LIEIYLRNESCYVDVIATFRDATLKTII--GQHLDTNIFSDKYSDAHREIDVNNI 217
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 25.8 bits (55), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSP-IPCM 59
T GQE + + + Y D ++ F + + +S +N KW +V P +P +
Sbjct: 80 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV------KHFXPNVPII 133
Query: 60 LLANKCDL 67
L+ NK DL
Sbjct: 134 LVGNKKDL 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,439,647
Number of Sequences: 62578
Number of extensions: 166054
Number of successful extensions: 686
Number of sequences better than 100.0: 264
Number of HSP's better than 100.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 422
Number of HSP's gapped (non-prelim): 264
length of query: 142
length of database: 14,973,337
effective HSP length: 89
effective length of query: 53
effective length of database: 9,403,895
effective search space: 498406435
effective search space used: 498406435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)