BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10891
(142 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R7A4|RAB7L_PONAB Ras-related protein Rab-7L1 OS=Pongo abelii GN=RAB7L1 PE=2 SV=1
Length = 203
Score = 136 bits (343), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 60/110 (54%), Positives = 82/110 (74%)
Query: 4 GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
GQERFT MTR+YY+DA C+IMFD+TN +F N+ +WK+D+D K TL +G P+PC+LLAN
Sbjct: 66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLAN 125
Query: 64 KCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113
KCDL V + I+ F KE+ F GWTETS KE +N++M+ L++ +MR
Sbjct: 126 KCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMR 175
>sp|O14966|RAB7L_HUMAN Ras-related protein Rab-7L1 OS=Homo sapiens GN=RAB7L1 PE=1 SV=1
Length = 203
Score = 136 bits (343), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 60/110 (54%), Positives = 82/110 (74%)
Query: 4 GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
GQERFT MTR+YY+DA C+IMFD+TN +F N+ +WK+D+D K TL +G P+PC+LLAN
Sbjct: 66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPCLLLAN 125
Query: 64 KCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113
KCDL V + I+ F KE+ F GWTETS KE +N++M+ L++ +MR
Sbjct: 126 KCDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLIEKMMR 175
>sp|Q91YQ1|RAB7L_MOUSE Ras-related protein Rab-7L1 OS=Mus musculus GN=Rab7l1 PE=2 SV=1
Length = 204
Score = 132 bits (332), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 63/129 (48%), Positives = 87/129 (67%), Gaps = 9/129 (6%)
Query: 4 GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
GQERFT MTR+YY+DA C+IMFD+TN +F N+ +WK+D+D K TL G P+PC+LLAN
Sbjct: 66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPSGEPVPCLLLAN 125
Query: 64 KCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFPNN 123
K DL V + I+ F KE+ F GWTETS KE +N++M+ L++ +M NN
Sbjct: 126 KSDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLVEKMM---------NN 176
Query: 124 DDENMVKLS 132
E+++ LS
Sbjct: 177 SREDVMSLS 185
>sp|Q63481|RAB7L_RAT Ras-related protein Rab-7L1 OS=Rattus norvegicus GN=Rab7l1 PE=2
SV=1
Length = 204
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 88/134 (65%), Gaps = 1/134 (0%)
Query: 4 GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
GQERFT MTR+YY+DA C+IMFD+TN +F N+ +WK+D+D K TL G P+PC+LLAN
Sbjct: 66 GQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPSGEPVPCLLLAN 125
Query: 64 KCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFPNN 123
K DL V + I+ F KE+ F GWTETS KE +N++M+ L++ +M ++
Sbjct: 126 KSDLSPWAVSRDQIDRFSKENGFTGWTETSVKENKNINEAMRVLVEKMMNNSREDIMSSS 185
Query: 124 DDENMVKL-SGPAP 136
N + L + P+P
Sbjct: 186 TQGNYINLQTKPSP 199
>sp|Q06AU5|RAB32_PIG Ras-related protein Rab-32 OS=Sus scrofa GN=RAB32 PE=2 SV=1
Length = 226
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/139 (41%), Positives = 90/139 (64%), Gaps = 3/139 (2%)
Query: 4 GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
GQERF MTRVYYK+A G +++FD++ + F+ LKWK D+D K L +GSPIP +LLAN
Sbjct: 86 GQERFGNMTRVYYKEAVGALVVFDISRGSPFEAVLKWKNDLDSKVHLPNGSPIPAVLLAN 145
Query: 64 KCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFPN 122
KCD + + ++ F KEH F GW ETS K+ + ++++ +FL++ ++ Q+FP+
Sbjct: 146 KCDQKKDSGQNPSQMDQFCKEHGFTGWFETSAKDNINIDEAARFLVENILANH--QSFPS 203
Query: 123 NDDENMVKLSGPAPKVEKK 141
+++ +KL K E K
Sbjct: 204 EENDGRIKLDEETMKKENK 222
>sp|Q13637|RAB32_HUMAN Ras-related protein Rab-32 OS=Homo sapiens GN=RAB32 PE=1 SV=3
Length = 225
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/140 (42%), Positives = 88/140 (62%), Gaps = 4/140 (2%)
Query: 4 GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
GQERF MTRVYYK+A G ++FD++ ++F+ LKWK D+D K L +GSPIP +LLAN
Sbjct: 84 GQERFGNMTRVYYKEAVGAFVVFDISRSSTFEAVLKWKSDLDSKVHLPNGSPIPAVLLAN 143
Query: 64 KCDL-PHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFPN 122
KCD + ++ F KEH F GW ETS K+ + + ++ +FL++ ++ Q+FPN
Sbjct: 144 KCDQNKDSSQSPSQVDQFCKEHGFAGWFETSAKDNINIEEAARFLVEKILVNH--QSFPN 201
Query: 123 ND-DENMVKLSGPAPKVEKK 141
+ D + +KL + E K
Sbjct: 202 EENDVDKIKLDQETLRAENK 221
>sp|Q9CZE3|RAB32_MOUSE Ras-related protein Rab-32 OS=Mus musculus GN=Rab32 PE=2 SV=3
Length = 223
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 89/140 (63%), Gaps = 4/140 (2%)
Query: 4 GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
GQERF MTRVYYK+A G ++FD++ ++F LKWK D+D K L +GSPIP +LLAN
Sbjct: 82 GQERFGNMTRVYYKEALGAFVVFDISRSSTFDAVLKWKNDLDSKVHLPNGSPIPAVLLAN 141
Query: 64 KCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFPN 122
KCD + ++ F K+H F GW ETS K+ + ++++ +FL++ ++ + Q+FP+
Sbjct: 142 KCDQKKDNSQSPSQMDQFCKDHGFTGWFETSAKDNINIDEATRFLVENMLANQ--QSFPS 199
Query: 123 ND-DENMVKLSGPAPKVEKK 141
+ D + +KL P + +
Sbjct: 200 EEIDLDRIKLVEEPPTTKPR 219
>sp|Q54QR3|RB32A_DICDI Ras-related protein Rab-32A OS=Dictyostelium discoideum GN=rab32A
PE=1 SV=1
Length = 219
Score = 109 bits (273), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 55/121 (45%), Positives = 79/121 (65%), Gaps = 3/121 (2%)
Query: 4 GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTL-SDGSPIPCMLLA 62
GQERF MTRVYYK+A G +I FD+T ++F+ KWK D+D K T +D PIP +LLA
Sbjct: 74 GQERFGSMTRVYYKEAVGAMITFDVTRMSTFEAVAKWKADIDSKVTYGADEKPIPVVLLA 133
Query: 63 NKCDLPHRQV--DINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNF 120
NKCDL ND++ + K++ FIGW ETS KE + + + +FL+D +++ + +N
Sbjct: 134 NKCDLGKDAFIKTANDMDKYCKDNGFIGWFETSAKENMNIEKAARFLVDHILKNDVRRNQ 193
Query: 121 P 121
P
Sbjct: 194 P 194
>sp|Q55E31|RB32B_DICDI Ras-related protein Rab-32B OS=Dictyostelium discoideum GN=rab32B
PE=3 SV=1
Length = 260
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/129 (41%), Positives = 78/129 (60%), Gaps = 1/129 (0%)
Query: 4 GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
G ERF MTRVYY+ A II+FDL+ ++F KW++DV+ K L++ PIP +LLAN
Sbjct: 118 GHERFGTMTRVYYRYAIAAIIVFDLSRPSTFDAVTKWREDVNSKVVLANQEPIPVLLLAN 177
Query: 64 KCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFPNN 123
K DL VD ++ F KE+NFIGW TS +N++M FL ++ + N P
Sbjct: 178 KSDLSTSYVDSEMLDRFCKENNFIGWFATSASNDTNINEAMHFLTKEIL-EVAKTNHPPK 236
Query: 124 DDENMVKLS 132
+E+ ++L+
Sbjct: 237 PEEDTLELT 245
>sp|Q8QZZ8|RAB38_MOUSE Ras-related protein Rab-38 OS=Mus musculus GN=Rab38 PE=1 SV=1
Length = 211
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 87/138 (63%), Gaps = 6/138 (4%)
Query: 4 GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
GQERF MTRVYY++A G I+FD+T +F+ KWK D+D K TL +G P+ +LLAN
Sbjct: 68 GQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLTLPNGKPVSVVLLAN 127
Query: 64 KCDLPHRQVDIND---IECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNF 120
KCD + V +N+ ++ F KEH F+GW ETS KE + ++++ + L+ ++ E +
Sbjct: 128 KCD-QGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILANEC--DL 184
Query: 121 PNNDDENMVKLSGPAPKV 138
+ + ++VK +PKV
Sbjct: 185 LESIEPDIVKPHLTSPKV 202
>sp|P57729|RAB38_HUMAN Ras-related protein Rab-38 OS=Homo sapiens GN=RAB38 PE=1 SV=1
Length = 211
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 76/115 (66%), Gaps = 4/115 (3%)
Query: 4 GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
GQERF MTRVYY++A G I+FD+T +F+ KWK D+D K +L +G P+ +LLAN
Sbjct: 68 GQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVSVVLLAN 127
Query: 64 KCDLPHRQVDIND---IECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115
KCD + V +N+ ++ F KEH F+GW ETS KE + ++++ + L+ ++ E
Sbjct: 128 KCD-QGKDVLMNNGLKMDQFCKEHGFVGWFETSAKENINIDEASRCLVKHILANE 181
>sp|Q8MXQ2|RB32C_DICDI Ras-related protein Rab-32C OS=Dictyostelium discoideum GN=rab32C
PE=3 SV=2
Length = 224
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 13/139 (9%)
Query: 4 GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
GQERF MTRVY+++AHG +I+FD T +F WK D+D + +P +LLAN
Sbjct: 86 GQERFGHMTRVYFQNAHGAVIVFDATRSGTFLGAKAWKDDIDY---CFNNENLPTILLAN 142
Query: 64 KCDL---PHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNF 120
KCDL P+ + DI F +++ F + TS KE +N++++ L+ ++ L+++
Sbjct: 143 KCDLLTPPYTFPE--DINTFCEQNRFNKYFYTSAKEDTGINEALEELVKII-----LESY 195
Query: 121 PNNDDENMVKLSGPAPKVE 139
+ KLS + E
Sbjct: 196 QTQEQSTGFKLSDQSQSTE 214
>sp|Q9DD03|RAB13_MOUSE Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=1 SV=1
Length = 202
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 69/124 (55%), Gaps = 7/124 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ A G I+++D+T++ SF+N W K + + + + +LL
Sbjct: 64 TAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENAS----AGVERLLL 119
Query: 62 ANKCDL-PHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL-DVLMRQEGLQN 119
NKCD+ RQV E +EH I + ETS K + V+++ L D+L++ G ++
Sbjct: 120 GNKCDMEAKRQVQREQAEKLAREHR-IRFFETSAKSSVNVDEAFSSLARDILLKTGGRRS 178
Query: 120 FPNN 123
N+
Sbjct: 179 GTNS 182
>sp|O97572|RAB7A_RABIT Ras-related protein Rab-7a OS=Oryctolagus cuniculus GN=RAB7A PE=2
SV=1
Length = 207
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 62/114 (54%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF ++ +Y+ A C+++FD+T N+FK W+ + ++ + D P ++L
Sbjct: 64 TAGQERFQSLSVAFYRGADCCVLVFDVTAPNTFKTLDSWRLEFLIQASPRDPENFPFVVL 123
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115
NK DL +RQV + + N I + ETS KE + V + + + ++QE
Sbjct: 124 GNKIDLENRQVATKRAQAWSYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177
>sp|Q3T0F5|RAB7A_BOVIN Ras-related protein Rab-7a OS=Bos taurus GN=RAB7A PE=2 SV=1
Length = 207
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 62/114 (54%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF + +Y+ A C+++FD+T N+FK W+ + ++ + D P ++L
Sbjct: 64 TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115
NK DL +RQV + + N I + ETS KE + V + + ++ ++QE
Sbjct: 124 GNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIVRNALKQE 177
>sp|P16976|YPTM1_MAIZE GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2
Length = 208
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 77/143 (53%), Gaps = 7/143 (4%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ AHG II++D+T+ SF N +W ++D S + +L+
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDS----VRKLLV 119
Query: 62 ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR-QEGLQN 119
NKCDL +R VD + + + +E I + ETS KE + V ++ + + + + G Q
Sbjct: 120 GNKCDLAENRAVDTSVAQAYAQEVG-IPFLETSAKESINVEEAFLAMSAAIKKSKAGSQA 178
Query: 120 FPNNDDENMVKLSGPAPKVEKKE 142
N+V++ G + E+++
Sbjct: 179 ALERKPSNVVQMKGRPIQQEQQK 201
>sp|P09527|RAB7A_RAT Ras-related protein Rab-7a OS=Rattus norvegicus GN=Rab7a PE=1 SV=2
Length = 207
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 61/114 (53%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF + +Y+ A C+++FD+T N+FK W+ + ++ + D P ++L
Sbjct: 64 TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115
NK DL +RQV + + N I + ETS KE + V + + + ++QE
Sbjct: 124 GNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177
>sp|Q5R9Y4|RAB7A_PONAB Ras-related protein Rab-7a OS=Pongo abelii GN=RAB7A PE=2 SV=1
Length = 207
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 61/114 (53%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF + +Y+ A C+++FD+T N+FK W+ + ++ + D P ++L
Sbjct: 64 TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115
NK DL +RQV + + N I + ETS KE + V + + + ++QE
Sbjct: 124 GNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177
>sp|P51150|RAB7A_MOUSE Ras-related protein Rab-7a OS=Mus musculus GN=Rab7a PE=1 SV=2
Length = 207
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 61/114 (53%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF + +Y+ A C+++FD+T N+FK W+ + ++ + D P ++L
Sbjct: 64 TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115
NK DL +RQV + + N I + ETS KE + V + + + ++QE
Sbjct: 124 GNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177
>sp|P51149|RAB7A_HUMAN Ras-related protein Rab-7a OS=Homo sapiens GN=RAB7A PE=1 SV=1
Length = 207
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 61/114 (53%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF + +Y+ A C+++FD+T N+FK W+ + ++ + D P ++L
Sbjct: 64 TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115
NK DL +RQV + + N I + ETS KE + V + + + ++QE
Sbjct: 124 GNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177
>sp|P18067|RAB7A_CANFA Ras-related protein Rab-7a OS=Canis familiaris GN=RAB7A PE=2 SV=1
Length = 207
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 61/114 (53%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF + +Y+ A C+++FD+T N+FK W+ + ++ + D P ++L
Sbjct: 64 TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115
NK DL +RQV + + N I + ETS KE + V + + + ++QE
Sbjct: 124 GNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177
>sp|P35286|RAB13_RAT Ras-related protein Rab-13 OS=Rattus norvegicus GN=Rab13 PE=2 SV=2
Length = 203
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 71/130 (54%), Gaps = 11/130 (8%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ A G I+++D+T++ SF+N W K + + + + +LL
Sbjct: 64 TAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENAS----AGVERLLL 119
Query: 62 ANKCDL-PHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL-DVLM----RQE 115
NKCD+ R+V E +EH I + ETS K + V+++ L D+L+ R+
Sbjct: 120 GNKCDMEAKRKVQREQAERLAREHR-IRFFETSAKSSVNVDEAFSSLARDILLKTGGRRS 178
Query: 116 GLQNFPNNDD 125
G + P++ D
Sbjct: 179 GNSSKPSSTD 188
>sp|Q1KME6|RAB6A_CHICK Ras-related protein Rab-6A OS=Gallus gallus GN=RAB6A PE=2 SV=3
Length = 208
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 71/137 (51%), Gaps = 9/137 (6%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF + Y +D+ ++++D+TN NSF+ T KW DV + GS + ML+
Sbjct: 69 TAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTE----RGSDVIIMLV 124
Query: 62 ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNF 120
NK DL RQV I + E KE N + + ETS K G V + + L G+++
Sbjct: 125 GNKTDLADKRQVSIEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVAAAL---PGMEST 180
Query: 121 PNNDDENMVKLSGPAPK 137
+ E+M+ + P+
Sbjct: 181 QDKSREDMIDIKLEKPQ 197
>sp|Q55FK2|RAB6_DICDI Ras-related protein Rab-6 OS=Dictyostelium discoideum GN=rab6 PE=3
SV=1
Length = 208
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 69/130 (53%), Gaps = 15/130 (11%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF + Y +D+ I+++D+TN+ SF NT+KW +DV + G+ + ML+
Sbjct: 62 TAGQERFRSLIPSYIRDSSVAIVVYDITNKVSFTNTIKWIEDVRNE----RGNNVVIMLV 117
Query: 62 ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNF 120
NK DL RQV I + E KE++ I +TETS K G F + L R+
Sbjct: 118 GNKTDLADKRQVSIEEGEAKAKEYD-IMFTETSAKAG--------FNIKALFRKVA-SAL 167
Query: 121 PNNDDENMVK 130
P D +M K
Sbjct: 168 PGIDSNSMTK 177
>sp|Q58DS5|RAB13_BOVIN Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1
Length = 203
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 67/124 (54%), Gaps = 6/124 (4%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ A G I+++D+T++ SF+N W K + + + + +LL
Sbjct: 64 TAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENAS----AGVERLLL 119
Query: 62 ANKCDL-PHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNF 120
NKCD+ R+V + +EH I + ETS K + V+++ L ++ + G +
Sbjct: 120 GNKCDMEAKRKVQKEQADKLAREHG-IRFFETSAKSSMNVDEAFSSLARDILLKSGGRRL 178
Query: 121 PNND 124
NN+
Sbjct: 179 KNNN 182
>sp|P17610|YPT3_SCHPO GTP-binding protein ypt3 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ypt3 PE=1 SV=1
Length = 214
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 66/125 (52%), Gaps = 6/125 (4%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQER+ +T YY+ A G +I++D+T Q+SF N +W K++ S I ML+
Sbjct: 66 TAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHA----DSNIVIMLV 121
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNF 120
NK DL H R V + + F E+N + + ETS + V ++ + +L + R ++
Sbjct: 122 GNKTDLLHLRAVSTEEAQAFAAENN-LSFIETSAMDASNVEEAFQTVLTEIFRIVSNRSL 180
Query: 121 PNNDD 125
DD
Sbjct: 181 EAGDD 185
>sp|P34140|RAB1B_DICDI Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B
PE=2 SV=2
Length = 206
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 76/145 (52%), Gaps = 10/145 (6%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ AHG I+++D+T+ SF N +W +++ S + +L+
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFNNVKQWMQEIQRYACDS----VTRLLV 119
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR-QEGLQNF 120
NKCDL +++ Y + I + ETS K V + + + + Q G+Q
Sbjct: 120 GNKCDLIEKKIVDTSTAREYADSVGIPFLETSAKSSANVEQAFMIMASEIKKLQGGIQ-- 177
Query: 121 PNND---DENMVKLSGPAPKVEKKE 142
PNN+ + ++VK +G P +KK+
Sbjct: 178 PNNNSTYNAHVVKPTGFTPIGKKKK 202
>sp|P51153|RAB13_HUMAN Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1
Length = 203
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 68/124 (54%), Gaps = 7/124 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ A G I+++D+T++ SF+N W K + + + + +LL
Sbjct: 64 TAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENAS----AGVERLLL 119
Query: 62 ANKCDL-PHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL-DVLMRQEGLQN 119
NKCD+ R+V + +EH I + ETS K + V+++ L D+L++ G ++
Sbjct: 120 GNKCDMEAKRKVQKEQADKLAREHG-IRFFETSAKSSMNVDEAFSSLARDILLKSGGRRS 178
Query: 120 FPNN 123
N
Sbjct: 179 GNGN 182
>sp|Q9WVB1|RAB6A_RAT Ras-related protein Rab-6A OS=Rattus norvegicus GN=Rab6a PE=2 SV=2
Length = 208
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 71/137 (51%), Gaps = 9/137 (6%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF + Y +D+ ++++D+TN NSF+ T KW DV + GS + ML+
Sbjct: 69 TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTE----RGSDVIIMLV 124
Query: 62 ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNF 120
NK DL RQV I + E KE N + + ETS K G V + + L G+++
Sbjct: 125 GNKTDLADKRQVSIEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVAAAL---PGMEST 180
Query: 121 PNNDDENMVKLSGPAPK 137
+ E+M+ + P+
Sbjct: 181 QDRSREDMIDIKLEKPQ 197
>sp|P35279|RAB6A_MOUSE Ras-related protein Rab-6A OS=Mus musculus GN=Rab6a PE=1 SV=4
Length = 208
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 71/137 (51%), Gaps = 9/137 (6%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF + Y +D+ ++++D+TN NSF+ T KW DV + GS + ML+
Sbjct: 69 TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTE----RGSDVIIMLV 124
Query: 62 ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNF 120
NK DL RQV I + E KE N + + ETS K G V + + L G+++
Sbjct: 125 GNKTDLADKRQVSIEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVAAAL---PGMEST 180
Query: 121 PNNDDENMVKLSGPAPK 137
+ E+M+ + P+
Sbjct: 181 QDRSREDMIDIKLEKPQ 197
>sp|Q5RAV6|RAB6A_PONAB Ras-related protein Rab-6A OS=Pongo abelii GN=RAB6A PE=2 SV=3
Length = 208
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 71/137 (51%), Gaps = 9/137 (6%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF + Y +D+ ++++D+TN NSF+ T KW DV + GS + ML+
Sbjct: 69 TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTE----RGSDVIIMLV 124
Query: 62 ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNF 120
NK DL RQV I + E KE N + + ETS K G V + + L G+++
Sbjct: 125 GNKTDLADKRQVSIEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVAAAL---PGMEST 180
Query: 121 PNNDDENMVKLSGPAPK 137
+ E+M+ + P+
Sbjct: 181 QDRSREDMIDIKLEKPQ 197
>sp|P20340|RAB6A_HUMAN Ras-related protein Rab-6A OS=Homo sapiens GN=RAB6A PE=1 SV=3
Length = 208
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 71/137 (51%), Gaps = 9/137 (6%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF + Y +D+ ++++D+TN NSF+ T KW DV + GS + ML+
Sbjct: 69 TAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTE----RGSDVIIMLV 124
Query: 62 ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNF 120
NK DL RQV I + E KE N + + ETS K G V + + L G+++
Sbjct: 125 GNKTDLADKRQVSIEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVAAAL---PGMEST 180
Query: 121 PNNDDENMVKLSGPAPK 137
+ E+M+ + P+
Sbjct: 181 QDRSREDMIDIKLEKPQ 197
>sp|P01123|YPT1_YEAST GTP-binding protein YPT1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YPT1 PE=1 SV=2
Length = 206
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 8/138 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ +HG II++D+T+Q SF W +++D T S + +L+
Sbjct: 64 TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT----STVLKLLV 119
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDS---MKFLLDVLMRQEGL- 117
NKCDL ++V D+ + + N + + ETS + V D+ M + M Q+ L
Sbjct: 120 GNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLN 179
Query: 118 QNFPNNDDENMVKLSGPA 135
+ +D+ V L G +
Sbjct: 180 ETTQKKEDKGNVNLKGQS 197
>sp|P61294|RAB6B_MOUSE Ras-related protein Rab-6B OS=Mus musculus GN=Rab6b PE=1 SV=1
Length = 208
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 9/137 (6%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF + Y +D+ ++++D+TN NSF+ T KW DV + GS + ML+
Sbjct: 69 TAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTE----RGSDVIIMLV 124
Query: 62 ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNF 120
NK DL RQ+ I + E KE + + + ETS K G V + + L G++N
Sbjct: 125 GNKTDLADKRQITIEEGEQRAKELSVM-FIETSAKTGYNVKQLFRRVASAL---PGMENV 180
Query: 121 PNNDDENMVKLSGPAPK 137
E M+ + P+
Sbjct: 181 QEKSKEGMIDIKLDKPQ 197
>sp|Q9NRW1|RAB6B_HUMAN Ras-related protein Rab-6B OS=Homo sapiens GN=RAB6B PE=1 SV=1
Length = 208
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 9/137 (6%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF + Y +D+ ++++D+TN NSF+ T KW DV + GS + ML+
Sbjct: 69 TAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTE----RGSDVIIMLV 124
Query: 62 ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNF 120
NK DL RQ+ I + E KE + + + ETS K G V + + L G++N
Sbjct: 125 GNKTDLADKRQITIEEGEQRAKELSVM-FIETSAKTGYNVKQLFRRVASAL---PGMENV 180
Query: 121 PNNDDENMVKLSGPAPK 137
E M+ + P+
Sbjct: 181 QEKSKEGMIDIKLDKPQ 197
>sp|A6QR46|RAB6B_BOVIN Ras-related protein Rab-6B OS=Bos taurus GN=RAB6B PE=2 SV=1
Length = 208
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 9/137 (6%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF + Y +D+ ++++D+TN NSF+ T KW DV + GS + ML+
Sbjct: 69 TAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTE----RGSDVIIMLV 124
Query: 62 ANKCDLP-HRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNF 120
NK DL RQ+ I + E KE + + + ETS K G V + + L G++N
Sbjct: 125 GNKTDLADKRQITIEEGEQRAKELSVM-FIETSAKTGYNVKQLFRRVASAL---PGMENV 180
Query: 121 PNNDDENMVKLSGPAPK 137
E M+ + P+
Sbjct: 181 QEKSKEGMIDIKLDKPQ 197
>sp|P92963|RAB1C_ARATH Ras-related protein RABB1c OS=Arabidopsis thaliana GN=RABB1C PE=2
SV=1
Length = 211
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 67/139 (48%), Gaps = 9/139 (6%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE F +TR YY+ A G ++++D+T + +F + W +D + + ML+
Sbjct: 62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN----ANMTIMLI 117
Query: 62 ANKCDLPHRQ-VDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR--QEGLQ 118
NKCDL HR+ V + E F KEH I + E S K V ++ + + Q+G+
Sbjct: 118 GNKCDLAHRRAVSTEEGEQFAKEHGLI-FMEASAKTAQNVEEAFIKTAATIYKKIQDGVF 176
Query: 119 NFPNNDDENMVKLSG-PAP 136
+ N V G P P
Sbjct: 177 DVSNESYGIKVGYGGIPGP 195
>sp|Q3ZC27|RAB19_BOVIN Ras-related protein Rab-19 OS=Bos taurus GN=RAB19 PE=2 SV=1
Length = 217
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 10/142 (7%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T+ YY+ AH II +DLT +++F++ W +++ + + ML+
Sbjct: 73 TAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKY----GAANLVIMLI 128
Query: 62 ANKCDL-PHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNF 120
NKCDL R V D +++ + ETS KE +++ + LM + L +
Sbjct: 129 GNKCDLWEKRHVLFEDACILAEKYGLLAVLETSAKESKNIDEVFVLMARELMARHSLPLY 188
Query: 121 PNNDD-----ENMVKLSGPAPK 137
E+ L PAP+
Sbjct: 189 GEGAPGSLPLESTPVLMAPAPR 210
>sp|Q5KTJ6|RAB13_MESAU Ras-related protein Rab-13 OS=Mesocricetus auratus GN=RAB13 PE=2
SV=1
Length = 203
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 67/120 (55%), Gaps = 7/120 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ A G I+++D+T++ SF+N W K + + + + +LL
Sbjct: 64 TAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENAS----AGVERLLL 119
Query: 62 ANKCDL-PHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL-DVLMRQEGLQN 119
NKCD+ R+V + +EH I + ETS K + V+++ L D+L++ G ++
Sbjct: 120 GNKCDMEAKRKVLKEQADKLAREHG-IRFFETSAKSSMNVDEAFNSLARDILLKSGGRRS 178
>sp|Q54P07|RB32D_DICDI Ras-related protein Rab-32D OS=Dictyostelium discoideum GN=rab32D
PE=3 SV=1
Length = 228
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 67/116 (57%), Gaps = 2/116 (1%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSP--IPCM 59
T GQE++ +T +++ + I++FD++N++SF+N W K K DG+ +P +
Sbjct: 65 TAGQEKYWCLTSAFWRTSDAVILVFDISNESSFRNLNFWYKQFKSKSINPDGTEKQLPIL 124
Query: 60 LLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115
LLANK D R VD ++I + +H + E S K + + +S+ L++V++ Q+
Sbjct: 125 LLANKSDSLTRAVDQSEINQWCTDHKVNLYYEVSAKSSINIKESILKLVEVIIEQD 180
>sp|O76173|RAB1C_DICDI Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C
PE=2 SV=1
Length = 201
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 59/104 (56%), Gaps = 6/104 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ AHG II++D+T+ +SF + +W DVD + S + +++
Sbjct: 89 TAGQERFKTITTSYYRGAHGLIIVYDITSMDSFNSIKRWLIDVDRFASPS----VLKLIV 144
Query: 62 ANKCDL-PHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSM 104
NKCDL R VD + F E N I ETS KE ++++
Sbjct: 145 GNKCDLNSKRAVDFKIAKKFADELN-IPIMETSAKESTAIDEAF 187
>sp|Q9VP48|RAB26_DROME Ras-related protein Rab-26 OS=Drosophila melanogaster GN=Rab26 PE=2
SV=2
Length = 388
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 63/126 (50%), Gaps = 11/126 (8%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+DAH ++++D+TN+ ++ N W ++ + +L+
Sbjct: 247 TAGQERFRSVTHAYYRDAHALLLLYDVTNKTTYDNIRAWLGEIREYAQ----EDVVIVLI 302
Query: 62 ANK--CDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQN 119
NK C RQV D E +EHN + + ETS K GL V + + RQ +
Sbjct: 303 GNKADCSGSERQVKREDGERLGREHN-VPFMETSAKTGLNV----ELSFTAVARQLKSRG 357
Query: 120 FPNNDD 125
+ + DD
Sbjct: 358 YEHGDD 363
>sp|P35294|RAB19_MOUSE Ras-related protein Rab-19 OS=Mus musculus GN=Rab19 PE=2 SV=3
Length = 217
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 66/134 (49%), Gaps = 5/134 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T+ YY+ AH II +DLT +++F++ W +++ + + ML+
Sbjct: 73 TAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKY----GAANLVIMLI 128
Query: 62 ANKCDL-PHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNF 120
NK DL R V D ++H + ETS KE +++ + L+ + L +
Sbjct: 129 GNKSDLWEKRHVLFEDACTLAEKHGLLAVLETSAKESRNIDEVFVLMAKELIARNSLHLY 188
Query: 121 PNNDDENMVKLSGP 134
+ + + + S P
Sbjct: 189 GESAQQGLSQDSSP 202
>sp|Q9ULW5|RAB26_HUMAN Ras-related protein Rab-26 OS=Homo sapiens GN=RAB26 PE=1 SV=3
Length = 256
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 54/101 (53%), Gaps = 6/101 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+DAH ++++D+TN+ SF N W ++ + MLL
Sbjct: 120 TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHD----VALMLL 175
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVN 101
NK D H R V D E KE+ + + ETS K GL V+
Sbjct: 176 GNKVDSAHERVVKREDGEKLAKEYG-LPFMETSAKTGLNVD 215
>sp|P35281|RAB10_RAT Ras-related protein Rab-10 OS=Rattus norvegicus GN=Rab10 PE=1 SV=1
Length = 200
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 72/133 (54%), Gaps = 7/133 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ A G ++++D+TN SF+N KW +++D + MLL
Sbjct: 65 TAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDQHAN----EDVERMLL 120
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNF 120
NKCD+ H R V E +EH I + ETS K + + + L + ++R+ ++
Sbjct: 121 RNKCDMDHKRVVPKGKGEQIAREHR-IRFFETSAKANINIEKAFLTLPEDILRKTPVKE- 178
Query: 121 PNNDDENMVKLSG 133
PN+++ ++ G
Sbjct: 179 PNSENVDISSGGG 191
>sp|P49103|RAB2A_MAIZE Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1
Length = 209
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE F +TR YY+ A G ++++D+T + +F + W +D + + ML+
Sbjct: 62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN----ANMTIMLV 117
Query: 62 ANKCDLPHRQ-VDINDIECFYKEHNFIGWTETSTKEGLMVNDSM 104
NKCDL HR+ V + E F KEH I + E S K V ++
Sbjct: 118 GNKCDLSHRRAVSYEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
>sp|P49104|RAB2B_MAIZE Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1
Length = 210
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE F +TR YY+ A G ++++D+T + +F + W +D + + ML+
Sbjct: 62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHAN----ANMTIMLV 117
Query: 62 ANKCDLPHRQ-VDINDIECFYKEHNFIGWTETSTKEGLMVNDSM 104
NKCDL HR+ V + E F KEH I + E S K V ++
Sbjct: 118 GNKCDLSHRRAVSYEEGEQFAKEHGLI-FMEASAKTAQNVEEAF 160
>sp|Q99P58|RB27B_MOUSE Ras-related protein Rab-27B OS=Mus musculus GN=Rab27b PE=1 SV=3
Length = 218
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 73/146 (50%), Gaps = 11/146 (7%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T +++DA G ++MFDLT+Q SF N W + + + L+
Sbjct: 75 TAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV---LI 131
Query: 62 ANKCDLPHRQVDINDIECF-YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ-----E 115
NK DLP Q ++N+ + E I + ETS G V S++ LLD++M++ E
Sbjct: 132 GNKADLPD-QREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRMEKCVE 190
Query: 116 GLQNFPNNDDENMVKLSGPAPKVEKK 141
Q + N KL G P EKK
Sbjct: 191 KTQVPDTVNGGNSGKLDGEKP-AEKK 215
>sp|Q86YS6|RAB43_HUMAN Ras-related protein Rab-43 OS=Homo sapiens GN=RAB43 PE=1 SV=1
Length = 212
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 66/117 (56%), Gaps = 6/117 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T+ YY+ A+G I+ +D+T ++SF + W +DV GS I +L+
Sbjct: 74 TAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA----GSNIVQLLI 129
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDS-MKFLLDVLMRQEG 116
NK DL R+V + + + + ++ + ETS K+ V ++ ++ +++MR G
Sbjct: 130 GNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGG 186
>sp|O04486|RAA2A_ARATH Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2
SV=1
Length = 217
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 59/113 (52%), Gaps = 6/113 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQER+ +T YY+ A G ++++D+T +F+N +W K++ S I ML+
Sbjct: 68 TAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHA----DSNIVIMLI 123
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113
NK DL H R V D + Y E + + ETS E L V + + +L + R
Sbjct: 124 GNKTDLKHLRAVATEDAQS-YAEKEGLSFIETSALEALNVEKAFQTILSEVYR 175
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,133,592
Number of Sequences: 539616
Number of extensions: 2084805
Number of successful extensions: 5104
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 163
Number of HSP's that attempted gapping in prelim test: 4231
Number of HSP's gapped (non-prelim): 752
length of query: 142
length of database: 191,569,459
effective HSP length: 105
effective length of query: 37
effective length of database: 134,909,779
effective search space: 4991661823
effective search space used: 4991661823
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)