Query psy10891
Match_columns 142
No_of_seqs 117 out of 1248
Neff 9.8
Searched_HMMs 46136
Date Fri Aug 16 21:06:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10891.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10891hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 100.0 4.3E-30 9.4E-35 170.9 13.7 129 1-133 64-193 (205)
2 KOG0092|consensus 100.0 2.4E-29 5.1E-34 166.8 10.7 114 1-119 60-174 (200)
3 KOG0094|consensus 100.0 8.6E-29 1.9E-33 164.5 11.2 129 1-133 77-206 (221)
4 KOG0078|consensus 100.0 4.5E-28 9.7E-33 163.1 13.3 112 1-117 67-179 (207)
5 KOG0394|consensus 100.0 9.7E-28 2.1E-32 158.1 11.5 117 1-117 64-183 (210)
6 KOG0098|consensus 99.9 5.3E-27 1.2E-31 155.0 10.6 112 1-117 61-173 (216)
7 cd04121 Rab40 Rab40 subfamily. 99.9 6.8E-26 1.5E-30 154.5 15.8 111 1-117 61-172 (189)
8 KOG0079|consensus 99.9 8.7E-27 1.9E-31 148.9 10.1 109 1-115 63-172 (198)
9 cd04120 Rab12 Rab12 subfamily. 99.9 8.5E-26 1.8E-30 155.4 15.7 111 1-115 55-166 (202)
10 KOG0080|consensus 99.9 8.7E-27 1.9E-31 150.7 9.2 112 1-116 66-178 (209)
11 KOG0088|consensus 99.9 1.5E-26 3.2E-31 149.4 9.4 111 1-116 68-179 (218)
12 KOG0087|consensus 99.9 3.2E-26 6.9E-31 154.0 10.3 110 1-115 69-179 (222)
13 KOG0091|consensus 99.9 1.8E-25 4E-30 145.0 12.8 130 1-133 64-194 (213)
14 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 6.3E-25 1.4E-29 151.0 15.5 118 1-118 56-174 (201)
15 PTZ00099 rab6; Provisional 99.9 1.3E-24 2.8E-29 146.7 14.7 112 1-117 35-147 (176)
16 KOG0093|consensus 99.9 2.1E-25 4.5E-30 142.4 9.7 111 1-116 76-187 (193)
17 cd04133 Rop_like Rop subfamily 99.9 7.5E-25 1.6E-29 147.8 12.0 107 1-112 55-173 (176)
18 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 1.1E-24 2.3E-29 147.8 12.8 107 1-112 59-180 (182)
19 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 4E-24 8.7E-29 149.7 15.6 109 1-114 67-190 (232)
20 cd01875 RhoG RhoG subfamily. 99.9 3.6E-24 7.8E-29 146.2 13.5 109 1-114 57-179 (191)
21 cd04126 Rab20 Rab20 subfamily. 99.9 4.3E-24 9.4E-29 148.6 14.0 112 1-116 50-194 (220)
22 KOG0083|consensus 99.9 3.7E-25 8.1E-30 139.4 7.3 112 1-117 53-165 (192)
23 cd04131 Rnd Rnd subfamily. Th 99.9 4.5E-24 9.7E-29 144.3 12.5 107 1-112 55-176 (178)
24 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 1E-23 2.3E-28 141.7 13.5 111 1-115 56-167 (172)
25 KOG0081|consensus 99.9 5.3E-24 1.1E-28 137.8 10.8 113 1-117 73-186 (219)
26 cd04144 Ras2 Ras2 subfamily. 99.9 2.4E-23 5.3E-28 141.9 14.5 115 1-117 53-168 (190)
27 smart00176 RAN Ran (Ras-relate 99.9 2.3E-23 4.9E-28 143.2 14.2 107 1-114 50-156 (200)
28 cd04110 Rab35 Rab35 subfamily. 99.9 6.3E-23 1.4E-27 140.9 15.9 112 1-118 61-173 (199)
29 cd04127 Rab27A Rab27a subfamil 99.9 3.2E-23 6.9E-28 139.8 13.8 110 1-114 69-179 (180)
30 cd04122 Rab14 Rab14 subfamily. 99.9 4.8E-23 1E-27 137.4 13.3 108 1-113 57-165 (166)
31 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 1.3E-22 2.8E-27 141.3 15.2 111 1-116 55-180 (222)
32 KOG0086|consensus 99.9 1.8E-23 4E-28 134.5 9.8 110 1-115 64-174 (214)
33 PTZ00369 Ras-like protein; Pro 99.9 9.3E-23 2E-27 138.9 13.7 112 1-116 59-171 (189)
34 cd01874 Cdc42 Cdc42 subfamily. 99.9 7.2E-23 1.6E-27 138.0 11.9 106 1-111 55-174 (175)
35 cd04136 Rap_like Rap-like subf 99.9 1.1E-22 2.4E-27 134.8 11.9 107 1-111 55-162 (163)
36 cd04112 Rab26 Rab26 subfamily. 99.9 3.9E-22 8.5E-27 136.1 14.8 110 1-115 56-166 (191)
37 cd04116 Rab9 Rab9 subfamily. 99.9 2.5E-22 5.5E-27 134.3 13.6 110 1-110 60-169 (170)
38 PLN03071 GTP-binding nuclear p 99.9 1.4E-22 3E-27 141.2 12.7 108 1-115 68-175 (219)
39 cd04134 Rho3 Rho3 subfamily. 99.9 1.5E-22 3.2E-27 138.0 12.6 110 1-115 54-177 (189)
40 cd04111 Rab39 Rab39 subfamily. 99.9 5.9E-22 1.3E-26 137.2 15.6 112 1-116 58-170 (211)
41 cd01871 Rac1_like Rac1-like su 99.9 1.6E-22 3.4E-27 136.3 12.1 105 1-110 55-173 (174)
42 cd01873 RhoBTB RhoBTB subfamil 99.9 1.6E-22 3.5E-27 138.5 11.8 102 1-110 72-194 (195)
43 cd04175 Rap1 Rap1 subgroup. T 99.9 2.8E-22 6.1E-27 133.3 12.6 107 1-111 55-162 (164)
44 cd01867 Rab8_Rab10_Rab13_like 99.9 5.6E-22 1.2E-26 132.4 13.5 108 1-113 58-166 (167)
45 smart00174 RHO Rho (Ras homolo 99.9 2.3E-22 4.9E-27 134.9 11.3 108 1-113 52-173 (174)
46 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 6.5E-22 1.4E-26 131.8 13.1 108 1-113 57-165 (166)
47 cd04109 Rab28 Rab28 subfamily. 99.9 1E-21 2.3E-26 136.3 14.4 112 1-114 56-168 (215)
48 cd04176 Rap2 Rap2 subgroup. T 99.9 4.5E-22 9.8E-27 132.1 12.1 107 1-111 55-162 (163)
49 cd01865 Rab3 Rab3 subfamily. 99.9 9.2E-22 2E-26 131.1 13.6 108 1-113 56-164 (165)
50 cd04117 Rab15 Rab15 subfamily. 99.9 5.7E-22 1.2E-26 131.8 12.5 105 1-110 55-160 (161)
51 cd04125 RabA_like RabA-like su 99.9 1.8E-21 3.8E-26 132.4 15.1 111 1-116 55-166 (188)
52 cd04132 Rho4_like Rho4-like su 99.9 1.4E-21 3E-26 132.7 14.3 111 1-116 55-171 (187)
53 KOG0097|consensus 99.9 6.3E-22 1.4E-26 126.1 11.7 112 1-117 66-178 (215)
54 cd01864 Rab19 Rab19 subfamily. 99.9 1.3E-21 2.7E-26 130.4 12.7 106 1-110 58-164 (165)
55 cd04106 Rab23_lke Rab23-like s 99.9 1.6E-21 3.5E-26 129.2 13.0 104 1-110 57-161 (162)
56 cd04138 H_N_K_Ras_like H-Ras/N 99.9 1.8E-21 3.9E-26 128.6 12.9 107 1-111 55-161 (162)
57 cd04145 M_R_Ras_like M-Ras/R-R 99.9 1.6E-21 3.4E-26 129.4 12.5 107 1-111 56-163 (164)
58 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 3.1E-21 6.7E-26 129.5 14.0 109 1-113 55-166 (170)
59 cd04124 RabL2 RabL2 subfamily. 99.9 2.5E-21 5.4E-26 128.7 13.2 106 1-114 55-160 (161)
60 cd04118 Rab24 Rab24 subfamily. 99.9 7.6E-21 1.6E-25 129.7 15.7 110 1-116 56-170 (193)
61 smart00173 RAS Ras subfamily o 99.9 2.5E-21 5.4E-26 128.6 12.9 108 1-112 54-162 (164)
62 cd00877 Ran Ran (Ras-related n 99.9 2.7E-21 5.8E-26 129.3 13.1 106 1-113 55-160 (166)
63 cd04119 RJL RJL (RabJ-Like) su 99.9 2.8E-21 6.1E-26 128.4 13.0 111 1-112 55-167 (168)
64 PLN03110 Rab GTPase; Provision 99.9 5.4E-21 1.2E-25 132.9 14.9 110 1-115 67-177 (216)
65 PF00071 Ras: Ras family; Int 99.9 2.4E-21 5.2E-26 128.4 12.5 107 1-112 54-161 (162)
66 cd04128 Spg1 Spg1p. Spg1p (se 99.9 2.8E-21 6.1E-26 131.1 13.0 107 1-113 55-167 (182)
67 KOG0095|consensus 99.9 2.4E-22 5.3E-27 128.9 6.8 110 1-115 62-172 (213)
68 cd01868 Rab11_like Rab11-like. 99.9 4.3E-21 9.4E-26 127.6 13.1 106 1-111 58-164 (165)
69 cd01866 Rab2 Rab2 subfamily. 99.9 4.9E-21 1.1E-25 128.0 13.4 108 1-113 59-167 (168)
70 PLN03118 Rab family protein; P 99.9 1.4E-20 3E-25 130.3 15.6 111 1-115 68-180 (211)
71 cd04140 ARHI_like ARHI subfami 99.9 4.9E-21 1.1E-25 127.6 12.9 108 1-110 55-163 (165)
72 cd04177 RSR1 RSR1 subgroup. R 99.9 7.4E-21 1.6E-25 127.1 13.0 109 1-112 55-164 (168)
73 KOG0393|consensus 99.9 1.2E-21 2.7E-26 132.3 9.1 110 1-115 59-182 (198)
74 cd04101 RabL4 RabL4 (Rab-like4 99.9 9.8E-21 2.1E-25 125.7 13.3 105 1-111 58-163 (164)
75 KOG0395|consensus 99.9 1.8E-20 3.9E-25 128.2 14.0 110 1-114 57-167 (196)
76 PLN03108 Rab family protein; P 99.9 2.5E-20 5.5E-25 129.0 14.7 110 1-115 61-171 (210)
77 cd04113 Rab4 Rab4 subfamily. 99.9 1.1E-20 2.5E-25 125.1 12.2 105 1-110 55-160 (161)
78 cd04103 Centaurin_gamma Centau 99.9 7.3E-21 1.6E-25 126.3 10.8 102 1-110 53-157 (158)
79 cd04115 Rab33B_Rab33A Rab33B/R 99.9 2E-20 4.3E-25 125.3 13.0 107 1-111 57-168 (170)
80 cd04130 Wrch_1 Wrch-1 subfamil 99.9 1.2E-20 2.6E-25 126.7 11.8 104 1-109 54-171 (173)
81 cd01862 Rab7 Rab7 subfamily. 99.9 5.7E-20 1.2E-24 122.8 14.5 114 1-114 55-169 (172)
82 smart00175 RAB Rab subfamily o 99.9 3.4E-20 7.3E-25 122.9 13.1 108 1-113 55-163 (164)
83 PLN00223 ADP-ribosylation fact 99.8 3E-20 6.5E-25 125.9 12.3 110 1-114 67-180 (181)
84 cd04149 Arf6 Arf6 subfamily. 99.8 2.2E-20 4.8E-25 125.1 11.3 105 1-109 59-167 (168)
85 cd04135 Tc10 TC10 subfamily. 99.8 2.9E-20 6.2E-25 124.7 11.6 106 1-111 54-173 (174)
86 cd01863 Rab18 Rab18 subfamily. 99.8 7.2E-20 1.6E-24 121.2 13.2 106 1-110 55-160 (161)
87 cd04158 ARD1 ARD1 subfamily. 99.8 4E-20 8.8E-25 123.8 11.8 111 1-115 49-164 (169)
88 cd04143 Rhes_like Rhes_like su 99.8 9.2E-20 2E-24 129.0 13.5 114 1-114 54-173 (247)
89 cd01860 Rab5_related Rab5-rela 99.8 1.1E-19 2.4E-24 120.4 13.2 106 1-111 56-162 (163)
90 cd04146 RERG_RasL11_like RERG/ 99.8 7.4E-20 1.6E-24 121.8 11.9 109 1-112 53-164 (165)
91 cd01861 Rab6 Rab6 subfamily. 99.8 9.7E-20 2.1E-24 120.5 12.3 105 1-110 55-160 (161)
92 cd04123 Rab21 Rab21 subfamily. 99.8 1.7E-19 3.7E-24 119.1 13.1 106 1-111 55-161 (162)
93 cd04139 RalA_RalB RalA/RalB su 99.8 2.8E-19 6E-24 118.4 13.5 108 1-112 54-162 (164)
94 cd01892 Miro2 Miro2 subfamily. 99.8 8E-20 1.7E-24 122.5 10.6 106 1-112 60-166 (169)
95 cd04150 Arf1_5_like Arf1-Arf5- 99.8 9.7E-20 2.1E-24 120.9 10.8 104 1-109 50-158 (159)
96 cd04129 Rho2 Rho2 subfamily. 99.8 2.1E-19 4.5E-24 122.2 12.3 110 1-115 55-176 (187)
97 cd04142 RRP22 RRP22 subfamily. 99.8 2.3E-19 5.1E-24 123.2 12.3 113 1-115 55-177 (198)
98 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.8 3.3E-19 7.1E-24 120.9 12.9 111 1-115 58-173 (183)
99 cd01870 RhoA_like RhoA-like su 99.8 3.1E-19 6.8E-24 119.7 12.6 106 1-111 55-174 (175)
100 smart00177 ARF ARF-like small 99.8 2.8E-19 6.1E-24 120.5 12.2 107 1-111 63-173 (175)
101 cd04148 RGK RGK subfamily. Th 99.8 4.5E-19 9.8E-24 123.6 13.3 109 1-115 56-166 (221)
102 PTZ00133 ADP-ribosylation fact 99.8 5E-19 1.1E-23 120.0 12.8 110 1-114 67-180 (182)
103 cd04114 Rab30 Rab30 subfamily. 99.8 6.6E-19 1.4E-23 117.5 12.6 106 1-111 62-168 (169)
104 cd04154 Arl2 Arl2 subfamily. 99.8 5.5E-19 1.2E-23 118.6 11.5 105 1-109 64-172 (173)
105 cd04162 Arl9_Arfrp2_like Arl9/ 99.8 9.2E-20 2E-24 121.6 7.7 102 1-109 50-163 (164)
106 cd04137 RheB Rheb (Ras Homolog 99.8 2.7E-18 5.9E-23 115.7 14.6 112 1-116 55-167 (180)
107 cd04147 Ras_dva Ras-dva subfam 99.8 1.1E-18 2.5E-23 119.6 13.0 108 1-112 53-163 (198)
108 KOG4252|consensus 99.8 3.3E-19 7.1E-24 117.7 8.9 111 1-117 75-186 (246)
109 cd01893 Miro1 Miro1 subfamily. 99.8 1.3E-18 2.8E-23 116.1 12.0 108 1-113 53-165 (166)
110 cd04157 Arl6 Arl6 subfamily. 99.8 3.1E-18 6.7E-23 113.3 11.7 107 1-109 51-161 (162)
111 cd00876 Ras Ras family. The R 99.8 4.9E-18 1.1E-22 111.9 12.3 106 1-110 53-159 (160)
112 cd04160 Arfrp1 Arfrp1 subfamil 99.8 3.7E-18 8.1E-23 113.6 11.6 105 1-109 56-166 (167)
113 cd00879 Sar1 Sar1 subfamily. 99.8 5.4E-18 1.2E-22 115.3 12.2 106 1-110 69-189 (190)
114 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.8 3.2E-18 7E-23 115.1 10.7 104 1-109 65-173 (174)
115 cd00154 Rab Rab family. Rab G 99.8 9.8E-18 2.1E-22 109.8 12.1 103 1-108 55-158 (159)
116 cd04156 ARLTS1 ARLTS1 subfamil 99.8 5.2E-18 1.1E-22 112.2 10.8 105 1-109 50-159 (160)
117 cd04151 Arl1 Arl1 subfamily. 99.8 9.5E-18 2.1E-22 110.9 11.9 105 1-109 49-157 (158)
118 cd04161 Arl2l1_Arl13_like Arl2 99.8 7.7E-18 1.7E-22 112.6 11.5 105 1-109 49-166 (167)
119 cd00157 Rho Rho (Ras homology) 99.8 8.7E-18 1.9E-22 112.1 11.4 104 1-109 54-170 (171)
120 cd01890 LepA LepA subfamily. 99.8 1.1E-17 2.3E-22 112.6 11.2 102 1-111 73-176 (179)
121 cd00878 Arf_Arl Arf (ADP-ribos 99.8 2.4E-17 5.2E-22 108.8 11.9 105 1-109 49-157 (158)
122 smart00178 SAR Sar1p-like memb 99.8 1.8E-17 4E-22 112.4 11.2 106 1-110 67-183 (184)
123 PTZ00132 GTP-binding nuclear p 99.7 7.5E-17 1.6E-21 111.9 13.7 107 1-114 64-170 (215)
124 KOG4423|consensus 99.7 8.5E-18 1.8E-22 111.5 7.9 135 1-135 81-217 (229)
125 TIGR02528 EutP ethanolamine ut 99.7 2.3E-17 5.1E-22 107.2 9.4 96 1-108 41-141 (142)
126 cd04102 RabL3 RabL3 (Rab-like3 99.7 1.7E-16 3.6E-21 109.3 10.9 97 1-98 60-176 (202)
127 PF00025 Arf: ADP-ribosylation 99.7 3.5E-16 7.6E-21 105.5 10.8 107 1-111 64-175 (175)
128 cd04159 Arl10_like Arl10-like 99.7 1E-15 2.2E-20 100.3 11.6 105 1-109 50-158 (159)
129 PLN00023 GTP-binding protein; 99.7 1.8E-15 4E-20 109.7 13.0 88 1-88 89-191 (334)
130 cd01898 Obg Obg subfamily. Th 99.7 1.4E-15 3E-20 101.4 10.5 108 1-110 54-169 (170)
131 cd04155 Arl3 Arl3 subfamily. 99.7 1.5E-15 3.2E-20 101.6 10.6 102 1-109 64-172 (173)
132 PRK15467 ethanolamine utilizat 99.6 2.6E-15 5.6E-20 99.7 10.0 101 1-114 43-149 (158)
133 cd04171 SelB SelB subfamily. 99.6 3.3E-15 7.3E-20 98.7 10.5 99 1-109 57-163 (164)
134 KOG3883|consensus 99.6 5.6E-15 1.2E-19 95.4 10.7 119 1-123 66-186 (198)
135 PRK12299 obgE GTPase CgtA; Rev 99.6 6.4E-15 1.4E-19 108.3 11.9 112 1-115 212-331 (335)
136 KOG0073|consensus 99.6 6.4E-15 1.4E-19 96.0 10.0 109 1-114 66-180 (185)
137 KOG0070|consensus 99.6 1.1E-14 2.4E-19 96.7 10.8 109 1-113 67-179 (181)
138 TIGR01393 lepA GTP-binding pro 99.6 6E-15 1.3E-19 115.6 10.9 104 1-113 76-181 (595)
139 KOG0075|consensus 99.6 1.9E-15 4.1E-20 97.0 6.5 105 1-112 71-182 (186)
140 cd01879 FeoB Ferrous iron tran 99.6 1.1E-14 2.4E-19 95.8 10.5 100 1-111 49-156 (158)
141 cd01897 NOG NOG1 is a nucleola 99.6 9.1E-15 2E-19 97.3 9.8 87 18-111 79-167 (168)
142 TIGR00157 ribosome small subun 99.6 5.1E-15 1.1E-19 104.7 8.3 95 5-108 23-119 (245)
143 cd01887 IF2_eIF5B IF2/eIF5B (i 99.6 5.7E-14 1.2E-18 93.3 11.6 104 1-112 56-166 (168)
144 COG2229 Predicted GTPase [Gene 99.6 8.2E-14 1.8E-18 92.5 11.2 102 1-110 74-176 (187)
145 cd01878 HflX HflX subfamily. 99.6 5.1E-14 1.1E-18 96.8 10.0 100 1-110 95-203 (204)
146 cd01888 eIF2_gamma eIF2-gamma 99.5 4.3E-14 9.4E-19 97.4 9.2 101 1-111 89-198 (203)
147 PRK05433 GTP-binding protein L 99.5 8.2E-14 1.8E-18 109.3 11.7 105 1-114 80-186 (600)
148 PF00009 GTP_EFTU: Elongation 99.5 4.1E-14 9E-19 96.3 8.9 104 1-112 76-187 (188)
149 PRK03003 GTP-binding protein D 99.5 6.8E-14 1.5E-18 107.3 10.6 107 1-115 265-385 (472)
150 cd00882 Ras_like_GTPase Ras-li 99.5 2.8E-13 6E-18 87.3 12.0 105 1-108 51-156 (157)
151 cd01891 TypA_BipA TypA (tyrosi 99.5 7.1E-14 1.5E-18 95.5 9.6 91 1-100 71-170 (194)
152 cd00881 GTP_translation_factor 99.5 1.8E-13 3.9E-18 92.4 11.3 103 1-111 68-186 (189)
153 TIGR02729 Obg_CgtA Obg family 99.5 1.3E-13 2.7E-18 101.4 11.0 108 1-111 211-328 (329)
154 KOG0076|consensus 99.5 3.5E-14 7.5E-19 93.4 6.8 110 1-114 75-189 (197)
155 COG1100 GTPase SAR1 and relate 99.5 4E-13 8.6E-18 93.1 12.1 111 1-115 60-188 (219)
156 TIGR00487 IF-2 translation ini 99.5 1.9E-13 4E-18 107.0 11.3 99 1-109 141-247 (587)
157 TIGR03594 GTPase_EngA ribosome 99.5 1.3E-13 2.9E-18 104.5 9.9 106 1-114 226-346 (429)
158 TIGR00436 era GTP-binding prot 99.5 1.6E-13 3.4E-18 98.5 9.6 103 1-112 54-164 (270)
159 CHL00189 infB translation init 99.5 2.6E-13 5.6E-18 108.0 11.4 101 1-111 301-409 (742)
160 cd01889 SelB_euk SelB subfamil 99.5 4.2E-13 9E-18 91.6 10.6 105 1-113 74-187 (192)
161 cd01894 EngA1 EngA1 subfamily. 99.5 2.5E-13 5.4E-18 89.1 9.1 99 1-111 51-157 (157)
162 KOG0096|consensus 99.5 2.3E-14 4.9E-19 95.5 3.9 107 1-114 65-171 (216)
163 TIGR03156 GTP_HflX GTP-binding 99.5 4.6E-13 9.9E-18 99.2 10.8 99 1-110 243-350 (351)
164 TIGR00231 small_GTP small GTP- 99.5 5.6E-13 1.2E-17 86.8 10.1 103 1-108 56-160 (161)
165 cd01881 Obg_like The Obg-like 99.5 2.9E-13 6.4E-18 90.4 8.9 106 1-110 50-175 (176)
166 PRK04213 GTP-binding protein; 99.5 7E-13 1.5E-17 90.9 10.6 103 1-113 58-193 (201)
167 TIGR00475 selB selenocysteine- 99.5 5.5E-13 1.2E-17 104.5 10.4 102 1-113 56-167 (581)
168 PRK05306 infB translation init 99.5 6.6E-13 1.4E-17 106.5 11.0 100 1-110 343-450 (787)
169 PRK03003 GTP-binding protein D 99.5 6.7E-13 1.4E-17 101.9 10.1 101 1-113 92-200 (472)
170 KOG0071|consensus 99.5 9E-13 2E-17 84.1 8.9 107 1-111 67-177 (180)
171 TIGR00491 aIF-2 translation in 99.4 1.5E-12 3.3E-17 101.8 11.3 100 1-111 75-215 (590)
172 PRK12297 obgE GTPase CgtA; Rev 99.4 3.9E-12 8.4E-17 96.1 12.4 108 1-114 212-329 (424)
173 TIGR00450 mnmE_trmE_thdF tRNA 99.4 2.2E-12 4.8E-17 98.1 10.6 99 1-115 257-363 (442)
174 PRK11058 GTPase HflX; Provisio 99.4 3E-12 6.5E-17 97.0 11.3 105 1-113 251-363 (426)
175 KOG1673|consensus 99.4 1.4E-12 3.1E-17 84.6 7.7 107 1-113 75-187 (205)
176 cd04165 GTPBP1_like GTPBP1-lik 99.4 4.4E-12 9.5E-17 88.7 10.6 100 1-108 90-219 (224)
177 PRK05291 trmE tRNA modificatio 99.4 1.8E-12 3.8E-17 99.0 8.8 95 1-113 269-371 (449)
178 PRK15494 era GTPase Era; Provi 99.4 3.9E-12 8.5E-17 93.9 10.4 102 1-113 106-217 (339)
179 PRK00093 GTP-binding protein D 99.4 4.6E-12 9.9E-17 96.4 10.7 106 1-114 227-346 (435)
180 PRK12298 obgE GTPase CgtA; Rev 99.4 7.5E-12 1.6E-16 93.9 11.4 112 1-114 213-335 (390)
181 PRK10512 selenocysteinyl-tRNA- 99.4 4.5E-12 9.7E-17 99.8 10.5 100 1-111 57-165 (614)
182 TIGR00437 feoB ferrous iron tr 99.4 4.1E-12 9E-17 99.7 9.7 99 1-111 47-154 (591)
183 TIGR03680 eif2g_arch translati 99.4 4.3E-12 9.3E-17 95.8 9.3 105 1-112 86-196 (406)
184 PRK09518 bifunctional cytidyla 99.4 5.8E-12 1.3E-16 101.0 10.4 105 1-114 504-623 (712)
185 PRK00089 era GTPase Era; Revie 99.4 7.6E-12 1.7E-16 90.6 9.7 104 1-112 59-171 (292)
186 cd01895 EngA2 EngA2 subfamily. 99.3 2.1E-11 4.6E-16 80.9 10.9 89 14-110 80-173 (174)
187 cd04164 trmE TrmE (MnmE, ThdF, 99.3 1.1E-11 2.3E-16 81.2 9.1 94 1-111 55-156 (157)
188 TIGR03594 GTPase_EngA ribosome 99.3 1.7E-11 3.6E-16 93.1 11.1 101 1-113 53-161 (429)
189 COG0532 InfB Translation initi 99.3 5.3E-11 1.2E-15 90.5 13.3 103 1-116 61-174 (509)
190 cd04163 Era Era subfamily. Er 99.3 1.5E-11 3.2E-16 80.9 9.1 102 1-110 57-167 (168)
191 PRK00093 GTP-binding protein D 99.3 1.8E-11 3.9E-16 93.2 10.7 95 1-109 55-159 (435)
192 cd01855 YqeH YqeH. YqeH is an 99.3 2.6E-11 5.6E-16 82.7 10.3 97 6-112 22-125 (190)
193 cd00880 Era_like Era (E. coli 99.3 1.3E-11 2.7E-16 80.4 8.5 101 1-110 51-162 (163)
194 PRK04000 translation initiatio 99.3 1.6E-11 3.4E-16 92.8 10.0 102 1-112 91-201 (411)
195 KOG0462|consensus 99.3 7.1E-12 1.5E-16 95.3 7.6 107 1-116 131-239 (650)
196 TIGR00483 EF-1_alpha translati 99.3 8.7E-12 1.9E-16 94.7 7.8 98 1-104 91-199 (426)
197 cd01884 EF_Tu EF-Tu subfamily. 99.3 3.3E-11 7.2E-16 82.6 9.8 92 1-100 71-171 (195)
198 PF10662 PduV-EutP: Ethanolami 99.3 1.9E-11 4.2E-16 79.2 8.0 97 1-108 42-142 (143)
199 PRK12296 obgE GTPase CgtA; Rev 99.3 3.9E-11 8.5E-16 92.0 10.9 100 15-115 233-343 (500)
200 PRK09518 bifunctional cytidyla 99.3 2.5E-11 5.4E-16 97.3 10.2 101 1-113 329-437 (712)
201 PRK04004 translation initiatio 99.3 3.5E-11 7.5E-16 94.4 10.8 100 1-111 77-217 (586)
202 COG0481 LepA Membrane GTPase L 99.3 2.2E-11 4.7E-16 91.5 9.0 113 1-122 82-196 (603)
203 TIGR01394 TypA_BipA GTP-bindin 99.3 2.5E-11 5.4E-16 95.3 9.5 106 1-114 70-193 (594)
204 KOG0072|consensus 99.3 1.8E-11 4E-16 78.5 7.0 110 1-114 68-181 (182)
205 PF08477 Miro: Miro-like prote 99.3 9.9E-12 2.1E-16 78.3 5.9 61 1-66 56-119 (119)
206 cd04166 CysN_ATPS CysN_ATPS su 99.3 2.7E-11 5.8E-16 83.8 8.1 96 1-103 83-185 (208)
207 PRK00454 engB GTP-binding prot 99.3 7.5E-11 1.6E-15 80.3 10.0 102 1-111 76-193 (196)
208 cd04105 SR_beta Signal recogni 99.3 6E-11 1.3E-15 81.8 9.5 68 1-69 54-123 (203)
209 PRK10218 GTP-binding protein; 99.3 5.7E-11 1.2E-15 93.4 10.4 106 1-114 74-197 (607)
210 cd01883 EF1_alpha Eukaryotic e 99.3 1.9E-11 4.1E-16 85.2 6.9 94 1-101 83-194 (219)
211 PF02421 FeoB_N: Ferrous iron 99.3 8.6E-12 1.9E-16 82.3 4.9 95 1-107 53-156 (156)
212 PRK12317 elongation factor 1-a 99.3 1.7E-11 3.7E-16 93.1 7.1 98 1-105 90-198 (425)
213 TIGR03597 GTPase_YqeH ribosome 99.3 6.5E-11 1.4E-15 88.1 9.9 96 5-110 50-151 (360)
214 PRK14845 translation initiatio 99.2 1.2E-10 2.5E-15 95.8 11.4 100 1-111 532-672 (1049)
215 COG1159 Era GTPase [General fu 99.2 8.5E-11 1.8E-15 83.9 9.3 105 1-113 60-173 (298)
216 PRK12736 elongation factor Tu; 99.2 8.7E-11 1.9E-15 88.5 9.5 103 1-111 81-200 (394)
217 PTZ00327 eukaryotic translatio 99.2 1.1E-10 2.5E-15 89.1 9.5 105 1-112 123-233 (460)
218 cd01859 MJ1464 MJ1464. This f 99.2 1.3E-10 2.8E-15 76.8 8.5 95 8-112 2-96 (156)
219 PLN00043 elongation factor 1-a 99.2 2.5E-11 5.3E-16 92.6 5.3 94 1-102 91-203 (447)
220 TIGR03598 GTPase_YsxC ribosome 99.2 1.1E-10 2.5E-15 78.7 7.9 93 1-101 70-179 (179)
221 TIGR00485 EF-Tu translation el 99.2 1.8E-10 4E-15 86.7 8.6 90 1-98 81-179 (394)
222 cd01876 YihA_EngB The YihA (En 99.2 5.4E-10 1.2E-14 73.6 9.9 100 1-110 51-169 (170)
223 PRK12289 GTPase RsgA; Reviewed 99.1 2.5E-10 5.3E-15 84.6 8.6 94 8-110 79-173 (352)
224 PRK00098 GTPase RsgA; Reviewed 99.1 1.1E-10 2.4E-15 84.9 6.6 85 16-108 78-163 (298)
225 PRK09554 feoB ferrous iron tra 99.1 4.7E-10 1E-14 90.4 10.8 100 1-111 56-167 (772)
226 cd04167 Snu114p Snu114p subfam 99.1 2.1E-10 4.5E-15 79.6 7.7 60 1-68 77-136 (213)
227 COG1160 Predicted GTPases [Gen 99.1 5.8E-10 1.3E-14 83.7 10.4 98 1-112 57-165 (444)
228 PRK12735 elongation factor Tu; 99.1 3.7E-10 8E-15 85.1 9.3 103 1-111 81-202 (396)
229 PRK09866 hypothetical protein; 99.1 1.2E-09 2.5E-14 85.6 12.0 103 1-109 236-350 (741)
230 COG1160 Predicted GTPases [Gen 99.1 6.2E-10 1.4E-14 83.5 10.2 106 1-114 232-353 (444)
231 cd04168 TetM_like Tet(M)-like 99.1 8.6E-10 1.9E-14 77.8 9.7 60 1-68 70-129 (237)
232 cd01854 YjeQ_engC YjeQ/EngC. 99.1 3.1E-10 6.7E-15 82.2 7.4 86 15-109 75-161 (287)
233 cd01885 EF2 EF2 (for archaea a 99.1 6.5E-10 1.4E-14 77.6 8.6 60 1-68 79-138 (222)
234 KOG1145|consensus 99.1 2.9E-09 6.2E-14 81.5 12.3 102 1-115 207-319 (683)
235 CHL00071 tufA elongation facto 99.1 1E-09 2.3E-14 83.0 9.5 91 1-99 81-180 (409)
236 TIGR02034 CysN sulfate adenyly 99.1 1.1E-09 2.4E-14 82.8 9.3 95 1-102 86-187 (406)
237 PRK12288 GTPase RsgA; Reviewed 99.1 9.4E-10 2E-14 81.5 8.3 86 16-109 118-205 (347)
238 PRK13351 elongation factor G; 99.0 3.9E-09 8.5E-14 84.6 11.2 61 1-69 79-139 (687)
239 cd01896 DRG The developmentall 99.0 5.4E-09 1.2E-13 73.5 10.4 50 55-111 176-225 (233)
240 PRK00049 elongation factor Tu; 99.0 2.7E-09 5.9E-14 80.5 9.3 90 1-98 81-179 (396)
241 KOG0074|consensus 99.0 5.7E-10 1.2E-14 71.6 4.5 105 1-109 68-176 (185)
242 PRK13768 GTPase; Provisional 99.0 8E-09 1.7E-13 73.5 10.6 106 1-112 103-247 (253)
243 PRK00741 prfC peptide chain re 99.0 9E-09 2E-13 80.1 11.4 60 1-68 85-144 (526)
244 PRK05124 cysN sulfate adenylyl 99.0 1.9E-09 4.1E-14 83.0 7.3 97 1-104 113-217 (474)
245 cd01858 NGP_1 NGP-1. Autoanti 99.0 3.2E-09 6.8E-14 70.3 7.4 90 15-111 5-94 (157)
246 COG2262 HflX GTPases [General 99.0 1.4E-08 3E-13 75.4 11.3 99 6-114 260-358 (411)
247 PRK12740 elongation factor G; 99.0 8.6E-09 1.9E-13 82.4 10.9 61 1-69 66-126 (668)
248 cd01856 YlqF YlqF. Proteins o 99.0 7.7E-09 1.7E-13 69.4 9.0 98 3-112 3-101 (171)
249 PTZ00141 elongation factor 1- 99.0 3.8E-09 8.3E-14 80.7 8.3 94 1-102 91-203 (446)
250 PLN03127 Elongation factor Tu; 98.9 7.3E-09 1.6E-13 79.2 9.3 103 1-111 130-251 (447)
251 PLN03126 Elongation factor Tu; 98.9 1.6E-08 3.4E-13 77.9 10.3 91 1-99 150-249 (478)
252 smart00275 G_alpha G protein a 98.9 4.6E-09 1E-13 77.7 6.9 112 1-115 190-337 (342)
253 PRK05506 bifunctional sulfate 98.9 7.7E-09 1.7E-13 82.2 7.9 95 1-102 110-211 (632)
254 cd01886 EF-G Elongation factor 98.9 7.8E-09 1.7E-13 74.2 7.0 61 1-69 70-130 (270)
255 TIGR03596 GTPase_YlqF ribosome 98.9 2.1E-08 4.6E-13 72.2 9.2 90 10-114 13-105 (276)
256 cd01849 YlqF_related_GTPase Yl 98.9 2E-08 4.3E-13 66.3 8.3 84 20-112 1-85 (155)
257 PRK13796 GTPase YqeH; Provisio 98.9 3.8E-08 8.2E-13 73.5 10.7 94 7-110 58-157 (365)
258 COG0218 Predicted GTPase [Gene 98.9 5.9E-08 1.3E-12 66.0 10.4 99 5-113 90-198 (200)
259 COG4917 EutP Ethanolamine util 98.8 2E-08 4.4E-13 63.2 7.0 97 1-109 43-143 (148)
260 cd00066 G-alpha G protein alph 98.8 7.4E-09 1.6E-13 76.0 5.7 112 1-115 167-314 (317)
261 COG0486 ThdF Predicted GTPase 98.8 3E-08 6.6E-13 74.8 8.9 100 1-114 271-378 (454)
262 cd04169 RF3 RF3 subfamily. Pe 98.8 4.7E-08 1E-12 70.1 9.2 76 1-85 77-152 (267)
263 PRK12739 elongation factor G; 98.8 8.7E-08 1.9E-12 77.0 11.5 61 1-69 79-139 (691)
264 COG2895 CysN GTPases - Sulfate 98.8 2.8E-08 6.1E-13 72.7 7.3 93 1-101 92-192 (431)
265 TIGR00503 prfC peptide chain r 98.8 5.6E-08 1.2E-12 75.7 8.9 59 1-67 86-144 (527)
266 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 5.1E-08 1.1E-12 63.4 7.1 76 13-98 6-83 (141)
267 KOG1489|consensus 98.7 1.2E-07 2.6E-12 68.5 9.4 91 16-110 272-365 (366)
268 KOG1423|consensus 98.7 6.4E-08 1.4E-12 69.7 7.8 91 14-111 151-270 (379)
269 TIGR00484 EF-G translation elo 98.7 7.2E-08 1.6E-12 77.5 8.8 88 1-97 81-171 (689)
270 PRK09563 rbgA GTPase YlqF; Rev 98.7 1.2E-07 2.6E-12 68.7 8.8 89 11-114 17-108 (287)
271 KOG0077|consensus 98.7 8.5E-08 1.9E-12 63.2 6.0 106 1-110 70-191 (193)
272 cd04104 p47_IIGP_like p47 (47- 98.7 5.8E-07 1.2E-11 61.7 10.5 104 1-115 58-187 (197)
273 KOG1707|consensus 98.6 6.7E-08 1.5E-12 74.5 6.0 101 13-115 74-178 (625)
274 COG1217 TypA Predicted membran 98.6 1.8E-07 3.9E-12 70.8 7.8 107 1-116 74-199 (603)
275 PF09439 SRPRB: Signal recogni 98.6 1.9E-07 4.1E-12 63.1 6.9 68 1-69 55-126 (181)
276 cd04170 EF-G_bact Elongation f 98.6 6.8E-07 1.5E-11 64.1 9.7 98 1-107 70-168 (268)
277 PF03029 ATP_bind_1: Conserved 98.6 1.6E-07 3.4E-12 66.3 6.2 105 1-111 97-236 (238)
278 KOG1144|consensus 98.6 3.9E-07 8.4E-12 72.3 8.7 103 1-115 546-690 (1064)
279 COG3276 SelB Selenocysteine-sp 98.5 1.5E-06 3.2E-11 65.4 9.8 103 1-112 56-162 (447)
280 PRK00007 elongation factor G; 98.5 1.1E-06 2.4E-11 70.8 9.7 88 1-97 81-171 (693)
281 cd01899 Ygr210 Ygr210 subfamil 98.5 2.1E-06 4.6E-11 63.1 10.4 57 54-113 213-270 (318)
282 PRK01889 GTPase RsgA; Reviewed 98.5 1.4E-06 3E-11 65.0 9.3 84 16-108 110-193 (356)
283 PRK09435 membrane ATPase/prote 98.5 1.2E-06 2.6E-11 64.6 8.4 87 15-113 166-261 (332)
284 KOG0090|consensus 98.4 2.6E-06 5.7E-11 58.5 8.7 68 1-69 88-159 (238)
285 TIGR00101 ureG urease accessor 98.4 2.5E-06 5.4E-11 58.7 8.7 81 19-111 113-195 (199)
286 COG0536 Obg Predicted GTPase [ 98.4 2.6E-06 5.7E-11 62.3 8.8 98 16-115 235-336 (369)
287 PRK07560 elongation factor EF- 98.4 3.2E-06 6.9E-11 68.5 9.5 60 1-68 93-152 (731)
288 COG0370 FeoB Fe2+ transport sy 98.4 3.1E-06 6.6E-11 66.7 8.7 87 17-114 80-166 (653)
289 COG5256 TEF1 Translation elong 98.3 2.2E-06 4.7E-11 64.1 7.0 92 1-102 91-201 (428)
290 TIGR00490 aEF-2 translation el 98.3 2E-06 4.4E-11 69.5 7.4 61 1-69 92-152 (720)
291 COG1084 Predicted GTPase [Gene 98.3 1.3E-05 2.8E-10 58.5 9.9 89 18-113 247-337 (346)
292 COG1162 Predicted GTPases [Gen 98.3 7.5E-06 1.6E-10 59.2 8.5 96 7-110 68-165 (301)
293 COG5257 GCD11 Translation init 98.2 2.8E-06 6E-11 61.8 5.8 106 1-116 92-206 (415)
294 PLN00116 translation elongatio 98.2 3E-06 6.4E-11 69.6 6.4 60 1-68 104-163 (843)
295 KOG1490|consensus 98.2 1.3E-05 2.9E-10 61.4 9.1 91 20-115 249-344 (620)
296 PF04670 Gtr1_RagA: Gtr1/RagA 98.2 9E-06 1.9E-10 57.2 7.3 106 1-112 54-176 (232)
297 PTZ00416 elongation factor 2; 98.2 4.4E-06 9.6E-11 68.6 6.0 60 1-68 98-157 (836)
298 KOG1707|consensus 98.2 1.1E-05 2.3E-10 62.7 7.6 92 17-115 494-586 (625)
299 KOG0082|consensus 98.1 1.2E-05 2.7E-10 59.4 6.9 116 1-116 201-348 (354)
300 TIGR00073 hypB hydrogenase acc 98.1 3.6E-05 7.7E-10 53.2 8.5 56 55-110 148-205 (207)
301 COG0050 TufB GTPases - transla 98.1 9.1E-06 2E-10 58.6 5.6 102 1-111 81-200 (394)
302 PF06858 NOG1: Nucleolar GTP-b 98.1 2.1E-05 4.5E-10 42.9 5.7 44 18-66 13-58 (58)
303 TIGR00750 lao LAO/AO transport 98.1 2.8E-05 6E-10 56.8 8.1 85 15-112 144-238 (300)
304 cd01882 BMS1 Bms1. Bms1 is an 97.9 0.00012 2.5E-09 51.4 8.9 89 1-100 89-184 (225)
305 COG5258 GTPBP1 GTPase [General 97.9 0.00016 3.5E-09 54.1 9.2 105 1-114 207-340 (527)
306 KOG0468|consensus 97.9 2.1E-05 4.5E-10 62.2 4.5 60 1-68 203-262 (971)
307 COG4108 PrfC Peptide chain rel 97.9 9.9E-05 2.1E-09 55.9 7.7 77 1-86 87-163 (528)
308 COG0480 FusA Translation elong 97.9 4.6E-05 1E-09 61.3 6.4 61 1-69 82-142 (697)
309 KOG0458|consensus 97.8 5.7E-05 1.2E-09 58.7 5.6 94 1-101 261-371 (603)
310 PRK09602 translation-associate 97.8 0.00023 5E-09 54.0 8.7 54 54-111 216-270 (396)
311 COG1161 Predicted GTPases [Gen 97.7 0.0001 2.2E-09 54.4 6.4 90 5-105 21-110 (322)
312 cd01850 CDC_Septin CDC/Septin. 97.7 8.3E-05 1.8E-09 53.7 5.8 68 18-95 114-185 (276)
313 smart00010 small_GTPase Small 97.7 0.00024 5.2E-09 44.4 7.1 76 11-101 39-115 (124)
314 cd04178 Nucleostemin_like Nucl 97.7 0.0001 2.2E-09 49.6 5.4 44 20-69 1-44 (172)
315 KOG1191|consensus 97.7 0.0001 2.2E-09 56.5 5.9 113 1-114 322-452 (531)
316 KOG1424|consensus 97.7 0.00016 3.4E-09 55.7 6.3 77 6-96 163-244 (562)
317 KOG1532|consensus 97.6 0.00038 8.2E-09 50.0 7.6 107 1-114 122-266 (366)
318 KOG0461|consensus 97.6 0.00031 6.7E-09 52.0 7.3 104 1-116 76-197 (522)
319 KOG0705|consensus 97.6 0.00024 5.2E-09 55.3 6.7 100 12-114 89-191 (749)
320 PF01926 MMR_HSR1: 50S ribosom 97.6 0.00036 7.9E-09 43.5 6.3 40 16-64 77-116 (116)
321 PF00350 Dynamin_N: Dynamin fa 97.6 0.0002 4.4E-09 47.4 5.4 58 1-65 107-168 (168)
322 cd01852 AIG1 AIG1 (avrRpt2-ind 97.6 0.0017 3.6E-08 44.4 9.9 95 16-115 81-187 (196)
323 KOG2423|consensus 97.5 0.00062 1.3E-08 51.3 7.9 93 10-111 202-299 (572)
324 COG3596 Predicted GTPase [Gene 97.5 0.00087 1.9E-08 48.1 8.2 107 1-115 93-225 (296)
325 KOG0460|consensus 97.5 0.00032 7E-09 51.8 6.0 104 1-112 123-245 (449)
326 smart00053 DYNc Dynamin, GTPas 97.5 0.00041 9E-09 49.1 5.9 53 10-69 153-206 (240)
327 COG0378 HypB Ni2+-binding GTPa 97.4 0.00053 1.1E-08 46.8 5.2 54 58-111 145-200 (202)
328 PF00503 G-alpha: G-protein al 97.3 0.00022 4.8E-09 53.9 3.6 64 1-67 242-315 (389)
329 PRK10463 hydrogenase nickel in 97.3 0.00056 1.2E-08 49.6 5.3 56 55-110 230-287 (290)
330 KOG2484|consensus 97.2 0.0012 2.6E-08 49.6 5.8 70 8-85 136-207 (435)
331 KOG3905|consensus 97.0 0.0082 1.8E-07 44.4 8.9 59 53-112 220-290 (473)
332 PF03308 ArgK: ArgK protein; 96.9 0.00068 1.5E-08 48.3 2.3 86 16-113 140-231 (266)
333 KOG1143|consensus 96.9 0.007 1.5E-07 45.5 7.6 95 1-103 255-379 (591)
334 COG1703 ArgK Putative periplas 96.9 0.012 2.6E-07 42.9 8.4 89 16-116 162-258 (323)
335 KOG0466|consensus 96.8 0.0023 4.9E-08 46.9 4.4 103 1-113 131-242 (466)
336 TIGR02836 spore_IV_A stage IV 96.7 0.019 4.1E-07 44.0 9.0 86 13-107 138-232 (492)
337 KOG0099|consensus 96.7 0.0068 1.5E-07 43.5 6.3 64 1-67 208-281 (379)
338 cd03110 Fer4_NifH_child This p 96.7 0.019 4E-07 38.5 8.2 77 1-90 99-175 (179)
339 KOG0467|consensus 96.7 0.0033 7.1E-08 50.8 4.8 59 1-67 78-136 (887)
340 COG1163 DRG Predicted GTPase [ 96.4 0.015 3.2E-07 42.9 6.3 51 55-112 239-289 (365)
341 KOG0463|consensus 96.2 0.017 3.8E-07 43.5 5.8 96 1-104 225-350 (641)
342 KOG2486|consensus 96.1 0.005 1.1E-07 44.4 2.6 96 5-110 203-314 (320)
343 KOG3886|consensus 95.9 0.13 2.8E-06 36.5 8.6 64 1-69 59-130 (295)
344 PF11111 CENP-M: Centromere pr 95.7 0.21 4.6E-06 33.6 8.8 90 18-112 64-153 (176)
345 KOG0465|consensus 95.7 0.062 1.4E-06 42.8 7.1 76 1-85 110-185 (721)
346 KOG0448|consensus 95.6 0.13 2.9E-06 41.5 8.7 61 1-69 212-275 (749)
347 KOG0410|consensus 95.4 0.019 4.1E-07 42.5 3.4 93 8-115 248-344 (410)
348 PF05783 DLIC: Dynein light in 95.4 0.045 9.7E-07 42.6 5.6 58 55-113 196-265 (472)
349 KOG0085|consensus 95.2 0.02 4.3E-07 40.5 2.8 113 1-116 205-353 (359)
350 KOG0464|consensus 95.2 0.0036 7.7E-08 47.7 -0.9 79 1-88 108-186 (753)
351 PF04548 AIG1: AIG1 family; I 95.1 0.12 2.6E-06 35.8 6.6 93 16-115 81-189 (212)
352 KOG2485|consensus 94.9 0.13 2.9E-06 37.8 6.5 83 12-105 40-124 (335)
353 TIGR00991 3a0901s02IAP34 GTP-b 94.6 0.26 5.7E-06 36.4 7.4 66 1-69 92-167 (313)
354 KOG1954|consensus 94.5 0.088 1.9E-06 39.8 4.9 52 11-69 174-225 (532)
355 KOG0447|consensus 94.4 0.57 1.2E-05 37.4 9.1 68 8-81 438-506 (980)
356 KOG3887|consensus 94.3 0.71 1.5E-05 33.1 8.6 109 1-113 81-203 (347)
357 KOG0459|consensus 94.0 0.041 8.9E-07 41.8 2.3 102 1-105 163-279 (501)
358 TIGR00064 ftsY signal recognit 93.8 0.64 1.4E-05 33.6 8.0 73 18-106 190-262 (272)
359 KOG0469|consensus 93.7 0.066 1.4E-06 42.0 3.0 59 1-67 104-162 (842)
360 PRK14974 cell division protein 93.7 0.85 1.8E-05 34.1 8.6 78 18-111 252-329 (336)
361 PRK10416 signal recognition pa 93.6 0.86 1.9E-05 33.8 8.6 73 18-106 232-304 (318)
362 cd02038 FleN-like FleN is a me 93.4 0.44 9.6E-06 30.7 6.1 59 1-67 51-109 (139)
363 COG1149 MinD superfamily P-loo 92.5 1.6 3.4E-05 31.7 8.1 62 13-87 180-241 (284)
364 COG3640 CooC CO dehydrogenase 92.4 0.49 1.1E-05 33.6 5.4 67 3-85 143-210 (255)
365 PF14331 ImcF-related_N: ImcF- 92.0 0.54 1.2E-05 33.9 5.5 48 18-69 25-83 (266)
366 cd01853 Toc34_like Toc34-like 91.4 1.9 4.1E-05 30.8 7.7 49 18-69 114-163 (249)
367 TIGR03348 VI_IcmF type VI secr 91.1 0.55 1.2E-05 40.8 5.5 48 18-69 201-257 (1169)
368 cd03111 CpaE_like This protein 91.0 1.2 2.7E-05 27.2 5.7 57 1-64 49-106 (106)
369 PF00448 SRP54: SRP54-type pro 90.8 1.7 3.8E-05 29.8 6.9 70 18-103 113-182 (196)
370 TIGR01425 SRP54_euk signal rec 90.6 2 4.3E-05 33.3 7.6 42 18-69 212-253 (429)
371 PHA02518 ParA-like protein; Pr 90.5 2.5 5.5E-05 28.7 7.6 59 1-67 83-145 (211)
372 COG1163 DRG Predicted GTPase [ 90.5 2.8 6.2E-05 31.3 7.9 93 13-110 135-236 (365)
373 PRK00771 signal recognition pa 89.1 3.2 6.9E-05 32.3 7.7 62 17-93 204-266 (437)
374 TIGR00959 ffh signal recogniti 88.8 4.3 9.3E-05 31.5 8.2 63 18-94 212-274 (428)
375 KOG1486|consensus 88.4 1.5 3.3E-05 31.7 5.1 51 55-112 238-288 (364)
376 PRK12727 flagellar biosynthesi 88.3 8.4 0.00018 30.9 9.6 68 21-104 460-528 (559)
377 cd03112 CobW_like The function 86.6 2 4.4E-05 28.3 4.8 41 17-67 117-158 (158)
378 PRK13505 formate--tetrahydrofo 86.6 2.9 6.2E-05 33.4 6.2 57 54-112 371-429 (557)
379 cd02036 MinD Bacterial cell di 86.5 7.1 0.00015 25.6 8.2 75 1-85 69-143 (179)
380 PRK10867 signal recognition pa 85.8 8.8 0.00019 29.9 8.4 62 18-94 213-275 (433)
381 COG4963 CpaE Flp pilus assembl 85.2 7.4 0.00016 29.5 7.5 53 12-69 233-285 (366)
382 cd03114 ArgK-like The function 85.1 2.3 4.9E-05 27.8 4.4 51 1-66 98-148 (148)
383 PF10087 DUF2325: Uncharacteri 85.1 5.1 0.00011 24.0 5.6 34 55-92 48-81 (97)
384 PRK05703 flhF flagellar biosyn 84.8 15 0.00033 28.4 9.3 87 1-104 306-401 (424)
385 TIGR03371 cellulose_yhjQ cellu 84.8 9.9 0.00021 26.5 7.9 61 1-68 121-181 (246)
386 cd03115 SRP The signal recogni 84.7 9.1 0.0002 25.3 8.2 60 18-91 112-171 (173)
387 COG1908 FrhD Coenzyme F420-red 84.3 4.3 9.4E-05 25.7 5.0 98 1-115 17-125 (132)
388 COG1419 FlhF Flagellar GTP-bin 84.2 17 0.00037 28.0 9.3 88 1-105 288-383 (407)
389 COG0523 Putative GTPases (G3E 83.5 8 0.00017 28.9 7.1 75 18-104 116-193 (323)
390 cd04170 EF-G_bact Elongation f 83.2 2.9 6.3E-05 29.9 4.6 29 83-111 237-265 (268)
391 PF05049 IIGP: Interferon-indu 83.1 5.7 0.00012 30.3 6.2 89 16-115 112-221 (376)
392 PRK06731 flhF flagellar biosyn 82.5 16 0.00035 26.5 8.3 67 18-100 184-250 (270)
393 PRK12726 flagellar biosynthesi 82.1 11 0.00024 29.1 7.3 84 1-101 292-382 (407)
394 KOG4273|consensus 81.6 2.9 6.4E-05 30.2 4.0 44 19-69 79-123 (418)
395 PTZ00258 GTP-binding protein; 81.1 3.1 6.7E-05 31.9 4.3 45 54-98 219-266 (390)
396 PRK11889 flhF flagellar biosyn 80.7 21 0.00046 27.8 8.5 66 18-100 350-416 (436)
397 PRK14721 flhF flagellar biosyn 80.5 20 0.00043 27.8 8.4 89 1-106 276-372 (420)
398 PF09419 PGP_phosphatase: Mito 80.4 15 0.00032 24.7 9.6 85 16-107 36-127 (168)
399 KOG3929|consensus 80.0 1.4 3E-05 32.0 2.0 41 54-96 189-236 (363)
400 COG0552 FtsY Signal recognitio 80.0 11 0.00023 28.4 6.5 69 20-105 259-328 (340)
401 PF08438 MMR_HSR1_C: GTPase of 79.8 2.7 5.9E-05 26.1 3.0 33 61-96 1-33 (109)
402 PF03193 DUF258: Protein of un 79.5 6.1 0.00013 26.4 4.8 22 89-110 37-58 (161)
403 COG4502 5'(3')-deoxyribonucleo 78.8 5.7 0.00012 26.1 4.3 44 17-65 82-125 (180)
404 TIGR00993 3a0901s04IAP86 chlor 78.2 8.5 0.00018 31.9 6.0 50 18-69 201-250 (763)
405 PRK14723 flhF flagellar biosyn 76.6 39 0.00085 28.5 9.4 76 18-106 293-369 (767)
406 PF07015 VirC1: VirC1 protein; 76.4 10 0.00022 26.9 5.4 96 1-105 90-187 (231)
407 PRK06995 flhF flagellar biosyn 75.2 40 0.00086 26.8 9.7 69 22-106 368-437 (484)
408 KOG1547|consensus 74.1 13 0.00028 26.9 5.4 69 18-96 155-227 (336)
409 PF05014 Nuc_deoxyrib_tr: Nucl 72.3 17 0.00037 22.3 5.3 45 14-67 57-101 (113)
410 PF03709 OKR_DC_1_N: Orn/Lys/A 72.1 18 0.00039 22.4 5.3 43 17-65 35-77 (115)
411 cd01886 EF-G Elongation factor 71.7 8.1 0.00017 27.9 4.1 28 84-111 240-267 (270)
412 PRK13849 putative crown gall t 71.1 34 0.00073 24.1 7.7 63 1-67 90-152 (231)
413 CHL00175 minD septum-site dete 69.6 24 0.00052 25.3 6.3 58 1-67 133-190 (281)
414 PF02492 cobW: CobW/HypB/UreG, 69.6 5.5 0.00012 26.7 2.7 57 18-84 113-170 (178)
415 PF01656 CbiA: CobQ/CobB/MinD/ 69.4 9.7 0.00021 25.3 4.0 52 12-69 110-162 (195)
416 COG0012 Predicted GTPase, prob 69.4 10 0.00022 28.9 4.3 43 54-97 205-249 (372)
417 PRK09601 GTP-binding protein Y 69.1 9.4 0.0002 29.0 4.1 44 54-98 198-243 (364)
418 TIGR01968 minD_bact septum sit 68.3 27 0.00058 24.4 6.2 58 1-67 118-175 (261)
419 PF00735 Septin: Septin; Inte 67.5 16 0.00035 26.6 5.0 43 18-69 113-156 (281)
420 cd02117 NifH_like This family 67.3 37 0.00081 23.2 8.2 62 18-86 141-203 (212)
421 cd04169 RF3 RF3 subfamily. Pe 66.7 11 0.00024 27.2 4.0 27 85-111 238-264 (267)
422 KOG1249|consensus 65.6 3.4 7.5E-05 32.8 1.2 87 13-110 105-209 (572)
423 PRK14722 flhF flagellar biosyn 65.2 60 0.0013 24.9 8.4 36 59-100 285-320 (374)
424 COG3523 IcmF Type VI protein s 64.4 23 0.00049 31.3 5.8 49 17-69 213-270 (1188)
425 PTZ00258 GTP-binding protein; 63.9 16 0.00035 28.0 4.5 15 15-29 112-126 (390)
426 PRK11537 putative GTP-binding 63.8 57 0.0012 24.3 7.3 72 19-104 123-196 (318)
427 cd02032 Bchl_like This family 62.2 25 0.00054 25.0 5.1 48 16-67 136-184 (267)
428 PRK13695 putative NTPase; Prov 61.3 44 0.00096 22.0 8.8 48 54-111 125-172 (174)
429 cd02042 ParA ParA and ParB of 61.3 32 0.00069 20.3 5.3 39 1-42 46-84 (104)
430 COG1358 RPL8A Ribosomal protei 59.8 12 0.00027 23.5 2.8 42 18-69 43-84 (116)
431 KOG1487|consensus 59.7 6 0.00013 28.9 1.5 52 55-113 231-282 (358)
432 cd01900 YchF YchF subfamily. 59.7 11 0.00024 27.4 2.9 43 55-98 195-239 (274)
433 TIGR01969 minD_arch cell divis 58.9 45 0.00098 23.2 5.9 57 1-67 115-172 (251)
434 cd02037 MRP-like MRP (Multiple 58.8 49 0.0011 21.7 6.4 62 17-86 90-159 (169)
435 PRK13185 chlL protochlorophyll 58.1 34 0.00074 24.4 5.2 60 16-85 138-198 (270)
436 KOG2865|consensus 58.1 32 0.0007 25.7 4.9 68 20-101 110-183 (391)
437 PRK12724 flagellar biosynthesi 57.3 93 0.002 24.4 9.7 64 20-100 334-398 (432)
438 TIGR01007 eps_fam capsular exo 56.3 60 0.0013 21.9 6.1 46 15-68 147-193 (204)
439 PRK10818 cell division inhibit 56.1 61 0.0013 23.0 6.2 64 1-67 120-185 (270)
440 KOG0781|consensus 56.0 34 0.00073 27.3 5.0 50 16-69 494-544 (587)
441 PF09547 Spore_IV_A: Stage IV 55.0 44 0.00095 26.3 5.4 41 54-96 179-219 (492)
442 TIGR02475 CobW cobalamin biosy 54.5 85 0.0018 23.6 6.9 13 18-30 123-135 (341)
443 PRK12723 flagellar biosynthesi 54.4 98 0.0021 23.8 9.4 69 21-106 288-358 (388)
444 COG1010 CobJ Precorrin-3B meth 53.5 40 0.00087 24.1 4.7 47 15-65 151-197 (249)
445 TIGR03677 rpl7ae 50S ribosomal 53.3 17 0.00037 22.8 2.7 40 18-67 42-81 (117)
446 TIGR01281 DPOR_bchL light-inde 49.7 59 0.0013 23.1 5.3 48 16-67 136-184 (268)
447 COG5019 CDC3 Septin family pro 49.3 57 0.0012 24.9 5.2 43 18-69 133-176 (373)
448 PF14606 Lipase_GDSL_3: GDSL-l 48.8 38 0.00083 23.0 3.9 47 11-62 50-100 (178)
449 cd08166 MPP_Cdc1_like_1 unchar 46.4 97 0.0021 21.4 6.6 67 18-84 42-111 (195)
450 PRK04175 rpl7ae 50S ribosomal 44.4 29 0.00064 21.9 2.7 40 18-67 46-85 (122)
451 cd02067 B12-binding B12 bindin 41.9 67 0.0014 19.7 4.1 40 18-63 50-89 (119)
452 KOG2743|consensus 41.2 36 0.00077 25.6 3.0 13 18-30 177-189 (391)
453 TIGR03566 FMN_reduc_MsuE FMN r 41.2 40 0.00087 22.4 3.2 47 14-64 64-110 (174)
454 cd00477 FTHFS Formyltetrahydro 40.1 1.7E+02 0.0038 23.6 6.7 57 53-111 354-412 (524)
455 cd01840 SGNH_hydrolase_yrhL_li 39.6 1E+02 0.0022 19.7 6.0 59 18-84 50-108 (150)
456 PF10622 Ehbp: Energy-converti 39.4 76 0.0016 18.2 3.7 46 58-107 22-71 (78)
457 PF09005 DUF1897: Domain of un 39.1 14 0.0003 18.4 0.5 16 3-18 6-21 (38)
458 PRK00007 elongation factor G; 38.7 52 0.0011 27.3 4.0 31 85-115 253-283 (693)
459 CHL00072 chlL photochlorophyll 38.5 1.5E+02 0.0032 21.7 6.0 48 16-67 136-184 (290)
460 COG2759 MIS1 Formyltetrahydrof 38.0 2.1E+02 0.0046 22.9 7.5 95 17-113 318-427 (554)
461 PF10036 RLL: Putative carniti 38.0 64 0.0014 23.1 3.9 73 26-113 17-89 (249)
462 PF02662 FlpD: Methyl-viologen 37.1 1.1E+02 0.0024 19.3 7.0 36 77-112 82-121 (124)
463 PRK13506 formate--tetrahydrofo 36.9 2.4E+02 0.0051 23.2 7.3 58 53-111 391-450 (578)
464 cd02040 NifH NifH gene encodes 36.1 1.5E+02 0.0033 20.8 8.2 61 18-85 141-202 (270)
465 PTZ00222 60S ribosomal protein 35.0 38 0.00082 24.5 2.3 42 17-68 147-188 (263)
466 PRK02261 methylaspartate mutas 34.6 1.3E+02 0.0027 19.4 8.6 81 18-111 54-134 (137)
467 PRK13507 formate--tetrahydrofo 34.3 2.6E+02 0.0057 22.9 7.0 56 54-111 400-457 (587)
468 KOG2655|consensus 34.0 2.1E+02 0.0047 21.9 6.2 66 18-93 129-198 (366)
469 PF03641 Lysine_decarbox: Poss 32.9 1.3E+02 0.0029 19.1 4.6 45 14-64 49-93 (133)
470 PRK13602 putative ribosomal pr 32.1 48 0.001 19.3 2.1 14 54-67 52-65 (82)
471 PTZ00386 formyl tetrahydrofola 31.3 3E+02 0.0066 22.8 7.1 93 18-111 387-495 (625)
472 PF14784 ECIST_Cterm: C-termin 31.2 1.2E+02 0.0025 19.5 3.9 42 17-60 82-123 (126)
473 PF00319 SRF-TF: SRF-type tran 30.5 56 0.0012 17.3 2.0 16 15-30 29-44 (51)
474 TIGR00484 EF-G translation elo 30.5 77 0.0017 26.3 3.8 31 85-115 252-282 (689)
475 PF11071 DUF2872: Protein of u 28.9 89 0.0019 20.3 3.0 43 12-63 66-108 (141)
476 PRK13601 putative L7Ae-like ri 28.8 63 0.0014 18.9 2.2 15 54-68 49-63 (82)
477 KOG3349|consensus 28.2 1E+02 0.0022 20.7 3.3 12 54-65 99-110 (170)
478 cd07393 MPP_DR1119 Deinococcus 27.5 1.5E+02 0.0033 20.7 4.4 19 15-33 38-56 (232)
479 PF10881 DUF2726: Protein of u 27.0 1.6E+02 0.0035 18.2 4.8 36 74-110 90-125 (126)
480 cd02035 ArsA ArsA ATPase funct 26.8 2.2E+02 0.0047 19.6 6.4 41 19-67 141-182 (217)
481 PF10740 DUF2529: Protein of u 26.8 2.1E+02 0.0045 19.4 4.7 42 16-67 79-121 (172)
482 TIGR03567 FMN_reduc_SsuE FMN r 26.6 1.1E+02 0.0023 20.3 3.3 67 15-86 62-129 (171)
483 PF13676 TIR_2: TIR domain; PD 26.1 48 0.001 19.5 1.5 23 7-29 38-60 (102)
484 PRK04930 glutathione-regulated 25.9 2.2E+02 0.0047 19.4 4.8 49 15-63 58-111 (184)
485 COG0541 Ffh Signal recognition 25.5 3.1E+02 0.0067 21.8 5.9 17 17-33 211-227 (451)
486 TIGR03815 CpaE_hom_Actino heli 25.5 2.8E+02 0.006 20.4 7.4 42 1-45 211-252 (322)
487 PRK06242 flavodoxin; Provision 25.2 1.3E+02 0.0028 19.1 3.5 65 15-87 40-104 (150)
488 PRK13660 hypothetical protein; 25.2 2.3E+02 0.005 19.4 5.4 19 13-31 124-142 (182)
489 COG4108 PrfC Peptide chain rel 25.2 46 0.00099 26.3 1.5 33 87-119 251-283 (528)
490 PF07764 Omega_Repress: Omega 24.9 79 0.0017 17.5 2.0 22 93-114 44-65 (71)
491 cd00954 NAL N-Acetylneuraminic 24.8 2.8E+02 0.006 20.1 8.3 60 17-82 95-154 (288)
492 PF08468 MTS_N: Methyltransfer 24.3 2.1E+02 0.0045 18.9 4.3 42 17-66 68-109 (155)
493 PRK10569 NAD(P)H-dependent FMN 24.1 1E+02 0.0022 21.1 2.9 47 14-64 62-108 (191)
494 PTZ00365 60S ribosomal protein 24.0 65 0.0014 23.4 2.0 42 17-68 147-188 (266)
495 PF01268 FTHFS: Formate--tetra 23.6 2.6E+02 0.0057 22.8 5.4 107 4-112 306-428 (557)
496 KOG2052|consensus 23.5 1.1E+02 0.0023 24.4 3.1 43 3-45 219-261 (513)
497 PHA03050 glutaredoxin; Provisi 23.4 1.6E+02 0.0035 18.0 3.5 17 88-104 71-87 (108)
498 COG4359 Uncharacterized conser 23.1 1.7E+02 0.0038 20.3 3.8 35 73-108 77-111 (220)
499 PRK06756 flavodoxin; Provision 23.0 1.9E+02 0.0042 18.3 4.0 45 15-63 46-91 (148)
500 PF00072 Response_reg: Respons 22.6 1.7E+02 0.0037 16.9 7.0 12 54-65 70-81 (112)
No 1
>KOG0084|consensus
Probab=99.97 E-value=4.3e-30 Score=170.92 Aligned_cols=129 Identities=35% Similarity=0.556 Sum_probs=113.1
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||||||++++.+||++|++||+|||+++..||..+..|+.++.++ ...++|.+|||||+|+.+ +.+..++...
T Consensus 64 DTAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~----~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~ 139 (205)
T KOG0084|consen 64 DTAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRY----ASENVPKLLVGNKCDLTEKRVVSTEEAQE 139 (205)
T ss_pred eccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhh----ccCCCCeEEEeeccccHhheecCHHHHHH
Confidence 89999999999999999999999999999999999999999999644 456789999999999988 8889999999
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCCccccccC
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFPNNDDENMVKLSG 133 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (142)
++..+++.+++++||+++.++++.|..|...+..++.........+...+++.+
T Consensus 140 fa~~~~~~~f~ETSAK~~~NVe~~F~~la~~lk~~~~~~~~~~~~~~~~~ql~~ 193 (205)
T KOG0084|consen 140 FADELGIPIFLETSAKDSTNVEDAFLTLAKELKQRKGLHVKWSTASLESVQLKG 193 (205)
T ss_pred HHHhcCCcceeecccCCccCHHHHHHHHHHHHHHhcccCCCCCcCCCCceeeCC
Confidence 999999544999999999999999999999999998876665543344444444
No 2
>KOG0092|consensus
Probab=99.96 E-value=2.4e-29 Score=166.82 Aligned_cols=114 Identities=27% Similarity=0.535 Sum_probs=104.3
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||||||.++.+.||++|+++|+|||+++..||..++.|+.++.+. ..+++-+.|||||+|+.. +.+..++...
T Consensus 60 DTAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~----~~~~~vialvGNK~DL~~~R~V~~~ea~~ 135 (200)
T KOG0092|consen 60 DTAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQ----ASPNIVIALVGNKADLLERREVEFEEAQA 135 (200)
T ss_pred EcCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhh----CCCCeEEEEecchhhhhhcccccHHHHHH
Confidence 89999999999999999999999999999999999999999999643 337788889999999998 8999999999
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhCCCC
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQN 119 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~~~ 119 (142)
++...+.. ++++||+++.|++++|..|.+.++.......
T Consensus 136 yAe~~gll-~~ETSAKTg~Nv~~if~~Ia~~lp~~~~~~~ 174 (200)
T KOG0092|consen 136 YAESQGLL-FFETSAKTGENVNEIFQAIAEKLPCSDPQER 174 (200)
T ss_pred HHHhcCCE-EEEEecccccCHHHHHHHHHHhccCcccccc
Confidence 99999955 9999999999999999999999998765443
No 3
>KOG0094|consensus
Probab=99.96 E-value=8.6e-29 Score=164.52 Aligned_cols=129 Identities=34% Similarity=0.465 Sum_probs=112.8
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||||||+++.+.|++++.++|+|||+++..||+....|++.+. +.+...++-++|||||.||.+ +.+..++.+.
T Consensus 77 DTAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~---~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~ 153 (221)
T KOG0094|consen 77 DTAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVR---RERGSDDVIIFLVGNKTDLSDKRQVSIEEGER 153 (221)
T ss_pred ecccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHH---hccCCCceEEEEEcccccccchhhhhHHHHHH
Confidence 899999999999999999999999999999999999999999997 444555688999999999998 8899999999
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCCccccccC
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFPNNDDENMVKLSG 133 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (142)
.+++++. .|+++||+.|.||.++|..|...+......+..+.+.....++++.
T Consensus 154 kAkel~a-~f~etsak~g~NVk~lFrrIaa~l~~~~~~~~~~~~~~~~~i~~k~ 206 (221)
T KOG0094|consen 154 KAKELNA-EFIETSAKAGENVKQLFRRIAAALPGMEVLEILSKQESMVDINLKG 206 (221)
T ss_pred HHHHhCc-EEEEecccCCCCHHHHHHHHHHhccCccccccccccccceeEEccC
Confidence 9999996 4999999999999999999999998876655444444456666663
No 4
>KOG0078|consensus
Probab=99.96 E-value=4.5e-28 Score=163.14 Aligned_cols=112 Identities=33% Similarity=0.545 Sum_probs=104.0
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||||+|.++..+||++|+++++|||+++..||+.+..|+..+.. +..+++|.+|||||+|+.. +.+..+..+.
T Consensus 67 DtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e----~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~ 142 (207)
T KOG0078|consen 67 DTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDE----HASDDVVKILVGNKCDLEEKRQVSKERGEA 142 (207)
T ss_pred EcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHh----hCCCCCcEEEeeccccccccccccHHHHHH
Confidence 8999999999999999999999999999999999999999999954 3446999999999999987 8999999999
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhCC
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGL 117 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~ 117 (142)
+|.++| .+|+++||++|.||.+.|-.|++.++.+...
T Consensus 143 lA~e~G-~~F~EtSAk~~~NI~eaF~~La~~i~~k~~~ 179 (207)
T KOG0078|consen 143 LAREYG-IKFFETSAKTNFNIEEAFLSLARDILQKLED 179 (207)
T ss_pred HHHHhC-CeEEEccccCCCCHHHHHHHHHHHHHhhcch
Confidence 999999 5599999999999999999999999976544
No 5
>KOG0394|consensus
Probab=99.95 E-value=9.7e-28 Score=158.13 Aligned_cols=117 Identities=29% Similarity=0.512 Sum_probs=108.1
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC---CCCCHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---RQVDINDI 77 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---~~~~~~~~ 77 (142)
||||||||.++...+|++||++++|||++++.||+.+..|..++.....-..+...|+||+|||+|+.. +.++....
T Consensus 64 DTAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~A 143 (210)
T KOG0394|consen 64 DTAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKA 143 (210)
T ss_pred ecccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHH
Confidence 899999999999999999999999999999999999999999987655444567899999999999966 78999999
Q ss_pred HHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhCC
Q psy10891 78 ECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGL 117 (142)
Q Consensus 78 ~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~ 117 (142)
+.||.+.|.+|||++||+...||.+.|..+.+.+++.+..
T Consensus 144 q~WC~s~gnipyfEtSAK~~~NV~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 144 QTWCKSKGNIPYFETSAKEATNVDEAFEEIARRALANEDR 183 (210)
T ss_pred HHHHHhcCCceeEEecccccccHHHHHHHHHHHHHhccch
Confidence 9999999999999999999999999999999999988754
No 6
>KOG0098|consensus
Probab=99.95 E-value=5.3e-27 Score=154.95 Aligned_cols=112 Identities=32% Similarity=0.517 Sum_probs=103.8
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||+|||+|++++.+||++|.++|+|||++..+||..+..|+.++. ++..++..++|++||+|+.. +.|..+++++
T Consensus 61 DtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~r----q~~~~NmvImLiGNKsDL~~rR~Vs~EEGea 136 (216)
T KOG0098|consen 61 DTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDAR----QHSNENMVIMLIGNKSDLEARREVSKEEGEA 136 (216)
T ss_pred ecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHH----HhcCCCcEEEEEcchhhhhccccccHHHHHH
Confidence 899999999999999999999999999999999999999999995 44458899999999999987 8899999999
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhCC
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGL 117 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~ 117 (142)
||+++|++ ++++||+++.++++.|..+...+.+.-..
T Consensus 137 FA~ehgLi-fmETSakt~~~VEEaF~nta~~Iy~~~q~ 173 (216)
T KOG0098|consen 137 FAREHGLI-FMETSAKTAENVEEAFINTAKEIYRKIQD 173 (216)
T ss_pred HHHHcCce-eehhhhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 99999955 99999999999999999999999876543
No 7
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.94 E-value=6.8e-26 Score=154.47 Aligned_cols=111 Identities=27% Similarity=0.495 Sum_probs=101.8
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..+++.|++++|++|+|||++++.||+.+..|+.++.... +++|+||||||.|+.. +.+..+++..
T Consensus 61 Dt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~-----~~~piilVGNK~DL~~~~~v~~~~~~~ 135 (189)
T cd04121 61 DTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA-----PGVPKILVGNRLHLAFKRQVATEQAQA 135 (189)
T ss_pred eCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECccchhccCCCHHHHHH
Confidence 899999999999999999999999999999999999999999996443 6899999999999976 6788999999
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhCC
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGL 117 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~ 117 (142)
+++..+ .++++|||++|.||+++|.++++.+..+.++
T Consensus 136 ~a~~~~-~~~~e~SAk~g~~V~~~F~~l~~~i~~~~~~ 172 (189)
T cd04121 136 YAERNG-MTFFEVSPLCNFNITESFTELARIVLMRHGR 172 (189)
T ss_pred HHHHcC-CEEEEecCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 999988 5699999999999999999999999877654
No 8
>KOG0079|consensus
Probab=99.94 E-value=8.7e-27 Score=148.91 Aligned_cols=109 Identities=35% Similarity=0.610 Sum_probs=102.9
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||||+|+.++..||++.+++++|||+++.+||..+..|++++...+ +.+|-+|||||+|..+ +.+..++...
T Consensus 63 DtAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~nc-----dsv~~vLVGNK~d~~~RrvV~t~dAr~ 137 (198)
T KOG0079|consen 63 DTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNC-----DSVPKVLVGNKNDDPERRVVDTEDARA 137 (198)
T ss_pred ecccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcC-----ccccceecccCCCCccceeeehHHHHH
Confidence 899999999999999999999999999999999999999999998655 7899999999999988 7788999999
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
|+...+ +.+|++||+.+.+++..|..|.++++..+
T Consensus 138 ~A~~mg-ie~FETSaKe~~NvE~mF~cit~qvl~~k 172 (198)
T KOG0079|consen 138 FALQMG-IELFETSAKENENVEAMFHCITKQVLQAK 172 (198)
T ss_pred HHHhcC-chheehhhhhcccchHHHHHHHHHHHHHH
Confidence 999999 45999999999999999999999999877
No 9
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.94 E-value=8.5e-26 Score=155.39 Aligned_cols=111 Identities=29% Similarity=0.493 Sum_probs=98.0
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..+++.|++++|++|+|||++++.||+.+..|+..+... ...++|+|+|+||+|+.. +.+.......
T Consensus 55 DtaGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~----~~~~~piilVgNK~DL~~~~~v~~~~~~~ 130 (202)
T cd04120 55 DTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKY----ASEDAELLLVGNKLDCETDREISRQQGEK 130 (202)
T ss_pred eCCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh----CCCCCcEEEEEECcccccccccCHHHHHH
Confidence 89999999999999999999999999999999999999999887532 235799999999999975 7788888888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
+++.....+|++|||++|.||+++|.+++..+.+..
T Consensus 131 ~a~~~~~~~~~etSAktg~gV~e~F~~l~~~~~~~~ 166 (202)
T cd04120 131 FAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 166 (202)
T ss_pred HHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhC
Confidence 888763256999999999999999999999887753
No 10
>KOG0080|consensus
Probab=99.94 E-value=8.7e-27 Score=150.74 Aligned_cols=112 Identities=31% Similarity=0.477 Sum_probs=104.4
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||||+|++++++||++|.++|+|||++.+.||..++.|+.++..++ ..+++-.++|+||+|... +.++.++...
T Consensus 66 DTAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ys---tn~diikmlVgNKiDkes~R~V~reEG~k 142 (209)
T KOG0080|consen 66 DTAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYS---TNPDIIKMLVGNKIDKESERVVDREEGLK 142 (209)
T ss_pred eccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhc---CCccHhHhhhcccccchhcccccHHHHHH
Confidence 899999999999999999999999999999999999999999999555 778888999999999875 8899999999
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 116 (142)
+++.+++. |+++||++.+++...|..++..|++...
T Consensus 143 fAr~h~~L-FiE~SAkt~~~V~~~FeelveKIi~tp~ 178 (209)
T KOG0080|consen 143 FARKHRCL-FIECSAKTRENVQCCFEELVEKIIETPS 178 (209)
T ss_pred HHHhhCcE-EEEcchhhhccHHHHHHHHHHHHhcCcc
Confidence 99999966 9999999999999999999999987543
No 11
>KOG0088|consensus
Probab=99.94 E-value=1.5e-26 Score=149.44 Aligned_cols=111 Identities=26% Similarity=0.542 Sum_probs=102.3
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||||+|..+.+.||++++++++|||++|..||+.+++|..+++... ...+.+++|+||+|+.+ +.++.++...
T Consensus 68 DTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~ml----Gnei~l~IVGNKiDLEeeR~Vt~qeAe~ 143 (218)
T KOG0088|consen 68 DTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTML----GNEIELLIVGNKIDLEEERQVTRQEAEA 143 (218)
T ss_pred eccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHh----CCeeEEEEecCcccHHHhhhhhHHHHHH
Confidence 899999999999999999999999999999999999999999996443 35678899999999987 8899999999
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 116 (142)
++..-|.. |+++||+++.||.++|..+...++++..
T Consensus 144 YAesvGA~-y~eTSAk~N~Gi~elFe~Lt~~MiE~~s 179 (218)
T KOG0088|consen 144 YAESVGAL-YMETSAKDNVGISELFESLTAKMIEHSS 179 (218)
T ss_pred HHHhhchh-heecccccccCHHHHHHHHHHHHHHHhh
Confidence 99999954 9999999999999999999999998764
No 12
>KOG0087|consensus
Probab=99.94 E-value=3.2e-26 Score=153.96 Aligned_cols=110 Identities=31% Similarity=0.520 Sum_probs=102.2
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||||||+.++.+||++|.++++|||++...||+.+..|+.++ +.+..++++++|||||+||.. +.+..++...
T Consensus 69 DTAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~EL----Rdhad~nivimLvGNK~DL~~lraV~te~~k~ 144 (222)
T KOG0087|consen 69 DTAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKEL----RDHADSNIVIMLVGNKSDLNHLRAVPTEDGKA 144 (222)
T ss_pred cccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHH----HhcCCCCeEEEEeecchhhhhccccchhhhHh
Confidence 89999999999999999999999999999999999999999999 455567999999999999988 8899999999
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
+++..+ ..|+++||.++.+++..|..++..|...-
T Consensus 145 ~Ae~~~-l~f~EtSAl~~tNVe~aF~~~l~~I~~~v 179 (222)
T KOG0087|consen 145 FAEKEG-LFFLETSALDATNVEKAFERVLTEIYKIV 179 (222)
T ss_pred HHHhcC-ceEEEecccccccHHHHHHHHHHHHHHHH
Confidence 999998 55999999999999999999999888744
No 13
>KOG0091|consensus
Probab=99.94 E-value=1.8e-25 Score=145.00 Aligned_cols=130 Identities=28% Similarity=0.482 Sum_probs=110.3
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||||+|++++.+||+++-++++|||+++..||+.++.|+.+...+.+ .+.++.++|||+|+|+.. +.++.++.+.
T Consensus 64 dtagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q--~P~k~VFlLVGhKsDL~SqRqVt~EEaEk 141 (213)
T KOG0091|consen 64 DTAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQ--GPDKVVFLLVGHKSDLQSQRQVTAEEAEK 141 (213)
T ss_pred eccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcC--CCCeeEEEEeccccchhhhccccHHHHHH
Confidence 8999999999999999999999999999999999999999988764441 233455799999999988 8999999999
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCCccccccC
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFPNNDDENMVKLSG 133 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (142)
+++.+|+. |+++|+++|.|+++.|+.|...+...-.+........+..++++.
T Consensus 142 lAa~hgM~-FVETSak~g~NVeEAF~mlaqeIf~~i~qGeik~edgw~gvKSsr 194 (213)
T KOG0091|consen 142 LAASHGMA-FVETSAKNGCNVEEAFDMLAQEIFQAIQQGEIKLEDGWGGVKSSR 194 (213)
T ss_pred HHHhcCce-EEEecccCCCcHHHHHHHHHHHHHHHHhcCceeeeeccccccccC
Confidence 99999955 999999999999999999999999876554455444444444433
No 14
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.93 E-value=6.3e-25 Score=150.96 Aligned_cols=118 Identities=49% Similarity=0.883 Sum_probs=102.8
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..+++.+++++|++|+|||++++.||+.+..|+..+..........++|+|||+||+|+.. +.+..+++..
T Consensus 56 Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~ 135 (201)
T cd04107 56 DIAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQ 135 (201)
T ss_pred ECCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHH
Confidence 899999999999999999999999999999999999999998886432222236789999999999974 5678888999
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhCCC
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQ 118 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~~ 118 (142)
+++..++.+++++||++|.|++++|.+|++.+++.....
T Consensus 136 ~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~~~~~~ 174 (201)
T cd04107 136 FCKENGFIGWFETSAKEGINIEEAMRFLVKNILANDKNL 174 (201)
T ss_pred HHHHcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhchhh
Confidence 999988667999999999999999999999998765433
No 15
>PTZ00099 rab6; Provisional
Probab=99.93 E-value=1.3e-24 Score=146.70 Aligned_cols=112 Identities=32% Similarity=0.429 Sum_probs=98.6
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..|+++||++|+|||++++.||+.+..|+..+... ...++|++||+||+|+.. +.+..+++..
T Consensus 35 Dt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~----~~~~~piilVgNK~DL~~~~~v~~~e~~~ 110 (176)
T PTZ00099 35 DTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNE----RGKDVIIALVGNKTDLGDLRKVTYEEGMQ 110 (176)
T ss_pred ECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCeEEEEEECcccccccCCCHHHHHH
Confidence 89999999999999999999999999999999999999999888632 225789999999999965 5677888888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhCC
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGL 117 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~ 117 (142)
++..++. .+++|||++|.|++++|.+|+..+.+....
T Consensus 111 ~~~~~~~-~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~ 147 (176)
T PTZ00099 111 KAQEYNT-MFHETSAKAGHNIKVLFKKIAAKLPNLDNS 147 (176)
T ss_pred HHHHcCC-EEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence 8888884 599999999999999999999999876543
No 16
>KOG0093|consensus
Probab=99.93 E-value=2.1e-25 Score=142.44 Aligned_cols=111 Identities=30% Similarity=0.529 Sum_probs=102.9
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||+|||+|+.++..||++|+++|+|||+++.+||..++.|.-.+..+++ .+.|+|||+||||+.+ +.++.+.+..
T Consensus 76 DTagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw----~naqvilvgnKCDmd~eRvis~e~g~~ 151 (193)
T KOG0093|consen 76 DTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSW----DNAQVILVGNKCDMDSERVISHERGRQ 151 (193)
T ss_pred ecccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeec----cCceEEEEecccCCccceeeeHHHHHH
Confidence 8999999999999999999999999999999999999999999865543 6899999999999987 8899999999
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 116 (142)
++.++|+ .||++||+.+.+++++|..++..+.+...
T Consensus 152 l~~~LGf-efFEtSaK~NinVk~~Fe~lv~~Ic~kms 187 (193)
T KOG0093|consen 152 LADQLGF-EFFETSAKENINVKQVFERLVDIICDKMS 187 (193)
T ss_pred HHHHhCh-HHhhhcccccccHHHHHHHHHHHHHHHhh
Confidence 9999996 49999999999999999999999987654
No 17
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.93 E-value=7.5e-25 Score=147.82 Aligned_cols=107 Identities=22% Similarity=0.383 Sum_probs=95.9
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-C--------
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNT-LKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-R-------- 70 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~-------- 70 (142)
||+|+++|..+++.+++++|++|+|||++++.||+.+ ..|+..+.... +++|++|||||+|+.+ +
T Consensus 55 Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~-----~~~piilvgnK~Dl~~~~~~~~~~~~ 129 (176)
T cd04133 55 DTAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA-----PNVPIVLVGTKLDLRDDKQYLADHPG 129 (176)
T ss_pred ECCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEeChhhccChhhhhhccC
Confidence 8999999999999999999999999999999999998 68999986443 5799999999999954 2
Q ss_pred --CCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 71 --QVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 71 --~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
.+..+++..+++.++..+|++|||++|.||+++|..+++.+.
T Consensus 130 ~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~~ 173 (176)
T cd04133 130 ASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVVL 173 (176)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHHh
Confidence 378889999999998657999999999999999999998763
No 18
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.93 E-value=1.1e-24 Score=147.77 Aligned_cols=107 Identities=20% Similarity=0.306 Sum_probs=96.4
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC----------
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNT-LKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---------- 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---------- 69 (142)
||+|+++|..+++.+++++|++++|||++++.||+.+ ..|+..+.... ++.|+||||||+|+..
T Consensus 59 DtaG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~-----~~~piilVgNK~DL~~~~~~~~~~~~ 133 (182)
T cd04172 59 DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-----PNTKMLLVGCKSDLRTDLTTLVELSN 133 (182)
T ss_pred ECCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-----CCCCEEEEeEChhhhcChhhHHHHHh
Confidence 8999999999999999999999999999999999997 79999987543 5799999999999852
Q ss_pred ---CCCCHHHHHHHHHHcCCceEEEeeccCCCC-HHHHHHHHHHHHH
Q psy10891 70 ---RQVDINDIECFYKEHNFIGWTETSTKEGLM-VNDSMKFLLDVLM 112 (142)
Q Consensus 70 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-i~~l~~~l~~~~~ 112 (142)
+.+..+++..+++.++..+|++|||+++.| |+++|..++..++
T Consensus 134 ~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 134 HRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV 180 (182)
T ss_pred cCCCCCCHHHHHHHHHHcCCCEEEECCcCCCCCCHHHHHHHHHHHHh
Confidence 358889999999999965799999999998 9999999998654
No 19
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.93 E-value=4e-24 Score=149.66 Aligned_cols=109 Identities=16% Similarity=0.258 Sum_probs=98.0
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHH-HHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC----------
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKN-TLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---------- 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---------- 69 (142)
||||+++|..+++.||+++|++|+|||++++.||+. +..|+..+.... +++|+|||+||+|+..
T Consensus 67 DTaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~-----~~~piilVgNK~DL~~~~~~~~~l~~ 141 (232)
T cd04174 67 DTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYC-----PSTRILLIGCKTDLRTDLSTLMELSN 141 (232)
T ss_pred eCCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECcccccccchhhhhcc
Confidence 899999999999999999999999999999999997 579999987543 5789999999999852
Q ss_pred ---CCCCHHHHHHHHHHcCCceEEEeeccCCC-CHHHHHHHHHHHHHHH
Q psy10891 70 ---RQVDINDIECFYKEHNFIGWTETSTKEGL-MVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 70 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~l~~~l~~~~~~~ 114 (142)
+.+..+++..+++.+++.+|++|||++|. ||+++|..++..++++
T Consensus 142 ~~~~~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 142 QKQAPISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred ccCCcCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHHh
Confidence 45788899999999996469999999998 8999999999998875
No 20
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.92 E-value=3.6e-24 Score=146.22 Aligned_cols=109 Identities=21% Similarity=0.368 Sum_probs=95.5
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-C--------
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-R-------- 70 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~-------- 70 (142)
|||||++|..+++.|++++|++|+|||++++.||+.+. .|+..+.... +++|++||+||.|+.+ +
T Consensus 57 Dt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~-----~~~piilvgNK~DL~~~~~~~~~~~~ 131 (191)
T cd01875 57 DTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC-----PNVPILLVGTKKDLRNDADTLKKLKE 131 (191)
T ss_pred ECCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-----CCCCEEEEEeChhhhcChhhHHHHhh
Confidence 89999999999999999999999999999999999996 6888775432 5799999999999854 1
Q ss_pred ----CCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 71 ----QVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 71 ----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
.+..+++..+++.++..+|++|||++|.||+++|..+++.++..
T Consensus 132 ~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~~ 179 (191)
T cd01875 132 QGQAPITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAVLNP 179 (191)
T ss_pred ccCCCCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHHhcc
Confidence 25667888899988866799999999999999999999988653
No 21
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.92 E-value=4.3e-24 Score=148.57 Aligned_cols=112 Identities=26% Similarity=0.369 Sum_probs=97.1
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-----------
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH----------- 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~----------- 69 (142)
||||+++|..++..|++++|++|+|||++++.||..+..|+..+... ...++|+|||+||+|+..
T Consensus 50 Dt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~----~~~~~piIlVgNK~DL~~~~~~~~~~~~~ 125 (220)
T cd04126 50 DTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDT----ANEDCLFAVVGNKLDLTEEGALAGQEKDA 125 (220)
T ss_pred eCCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEECcccccccccccccccc
Confidence 89999999999999999999999999999999999999888777532 235789999999999853
Q ss_pred ---------CCCCHHHHHHHHHHcCC-------------ceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891 70 ---------RQVDINDIECFYKEHNF-------------IGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 70 ---------~~~~~~~~~~~~~~~~~-------------~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 116 (142)
+.+..+++..++++.+. .+|++|||++|.||+++|..+++.++.-..
T Consensus 126 ~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~ 194 (220)
T cd04126 126 GDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLIL 194 (220)
T ss_pred cccccccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 56778899999988762 469999999999999999999998886543
No 22
>KOG0083|consensus
Probab=99.92 E-value=3.7e-25 Score=139.40 Aligned_cols=112 Identities=34% Similarity=0.539 Sum_probs=102.9
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||+|||+|++.+..||++||+++++||+.+..||+..+.|+.++..+. ...+.+.+++||+|+.. +.+..++.+.
T Consensus 53 dtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~----k~~v~l~llgnk~d~a~er~v~~ddg~k 128 (192)
T KOG0083|consen 53 DTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYA----KEAVALMLLGNKCDLAHERAVKRDDGEK 128 (192)
T ss_pred eccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHH----HhhHhHhhhccccccchhhccccchHHH
Confidence 899999999999999999999999999999999999999999996443 46788999999999965 8889999999
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhCC
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGL 117 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~ 117 (142)
+++.++ +||+++||++|.+++-.|-.|.+.+.+.+..
T Consensus 129 la~~y~-ipfmetsaktg~nvd~af~~ia~~l~k~~~~ 165 (192)
T KOG0083|consen 129 LAEAYG-IPFMETSAKTGFNVDLAFLAIAEELKKLKMG 165 (192)
T ss_pred HHHHHC-CCceeccccccccHhHHHHHHHHHHHHhccC
Confidence 999999 6799999999999999999999999987653
No 23
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.92 E-value=4.5e-24 Score=144.29 Aligned_cols=107 Identities=19% Similarity=0.283 Sum_probs=95.7
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC----------
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNT-LKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---------- 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---------- 69 (142)
||||+++|..+++.+++++|++|+|||++++.||+.+ ..|+..+...+ +++|++|||||+|+..
T Consensus 55 Dt~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~-----~~~~iilVgnK~DL~~~~~~~~~~~~ 129 (178)
T cd04131 55 DTSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFC-----PNTKVLLVGCKTDLRTDLSTLMELSH 129 (178)
T ss_pred ECCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHC-----CCCCEEEEEEChhhhcChhHHHHHHh
Confidence 8999999999999999999999999999999999995 79999987544 6799999999999842
Q ss_pred ---CCCCHHHHHHHHHHcCCceEEEeeccCCCC-HHHHHHHHHHHHH
Q psy10891 70 ---RQVDINDIECFYKEHNFIGWTETSTKEGLM-VNDSMKFLLDVLM 112 (142)
Q Consensus 70 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-i~~l~~~l~~~~~ 112 (142)
+.+..+++..+++.++..+|++|||++|.+ |+++|..+++.++
T Consensus 130 ~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 130 QRQAPVSYEQGCAIAKQLGAEIYLECSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred cCCCCCCHHHHHHHHHHhCCCEEEECccCcCCcCHHHHHHHHHHHHh
Confidence 347889999999999965799999999995 9999999998655
No 24
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.92 E-value=1e-23 Score=141.71 Aligned_cols=111 Identities=31% Similarity=0.411 Sum_probs=98.2
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..+++.+++++|++++|||++++.||..+..|+..+.+.. ...++|+++|+||+|+.. +.+..++...
T Consensus 56 Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~---~~~~~piilvgNK~Dl~~~~~v~~~~~~~ 132 (172)
T cd04141 56 DTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVR---LTEDIPLVLVGNKVDLESQRQVTTEEGRN 132 (172)
T ss_pred eCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhc---CCCCCCEEEEEEChhhhhcCccCHHHHHH
Confidence 899999999999999999999999999999999999999987775321 335799999999999865 6678888888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
+++.++ .++++|||++|.||+++|.+++..+.+..
T Consensus 133 ~a~~~~-~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~ 167 (172)
T cd04141 133 LAREFN-CPFFETSAALRHYIDDAFHGLVREIRRKE 167 (172)
T ss_pred HHHHhC-CEEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 998888 57999999999999999999999888643
No 25
>KOG0081|consensus
Probab=99.91 E-value=5.3e-24 Score=137.76 Aligned_cols=113 Identities=30% Similarity=0.488 Sum_probs=103.5
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||||+|++++..++++|=+++++||++++.||-.+++|+..+..+. -.++..+||++||+|+.+ +.+...+..+
T Consensus 73 DTAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hA---YcE~PDivlcGNK~DL~~~R~Vs~~qa~~ 149 (219)
T KOG0081|consen 73 DTAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHA---YCENPDIVLCGNKADLEDQRVVSEDQAAA 149 (219)
T ss_pred ccccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhh---ccCCCCEEEEcCccchhhhhhhhHHHHHH
Confidence 899999999999999999999999999999999999999999986443 346777999999999988 8889999999
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhCC
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGL 117 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~ 117 (142)
++..++ +|||++||-+|.+|++..+.++..++++-.+
T Consensus 150 La~kyg-lPYfETSA~tg~Nv~kave~LldlvM~Rie~ 186 (219)
T KOG0081|consen 150 LADKYG-LPYFETSACTGTNVEKAVELLLDLVMKRIEQ 186 (219)
T ss_pred HHHHhC-CCeeeeccccCcCHHHHHHHHHHHHHHHHHH
Confidence 999999 6799999999999999999999999987644
No 26
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.91 E-value=2.4e-23 Score=141.91 Aligned_cols=115 Identities=21% Similarity=0.397 Sum_probs=98.6
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++++|||++++.||+.+..|+..+.... .....++|+|+|+||+|+.. +.+.......
T Consensus 53 Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~ 131 (190)
T cd04144 53 DTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVK-DESAADVPIMIVGNKCDKVYEREVSTEEGAA 131 (190)
T ss_pred ECCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-cccCCCCCEEEEEEChhccccCccCHHHHHH
Confidence 899999999999999999999999999999999999999998886432 11135789999999999965 5667777778
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhCC
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGL 117 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~ 117 (142)
++..++ .+++++||++|.|++++|.++++.+..+...
T Consensus 132 ~~~~~~-~~~~e~SAk~~~~v~~l~~~l~~~l~~~~~~ 168 (190)
T cd04144 132 LARRLG-CEFIEASAKTNVNVERAFYTLVRALRQQRQG 168 (190)
T ss_pred HHHHhC-CEEEEecCCCCCCHHHHHHHHHHHHHHhhcc
Confidence 888888 4699999999999999999999988766543
No 27
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.91 E-value=2.3e-23 Score=143.16 Aligned_cols=107 Identities=31% Similarity=0.550 Sum_probs=94.2
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|..+++.|++++|++|+|||++++.||..+..|+..+.+.+ .++|++||+||+|+..+.+..+.. .+
T Consensus 50 Dt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~-----~~~piilvgNK~Dl~~~~v~~~~~-~~ 123 (200)
T smart00176 50 DTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC-----ENIPIVLCGNKVDVKDRKVKAKSI-TF 123 (200)
T ss_pred ECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhC-----CCCCEEEEEECcccccccCCHHHH-HH
Confidence 899999999999999999999999999999999999999999997544 589999999999986555555443 56
Q ss_pred HHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 81 YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
+...+ .+|++|||++|.||.++|.+|+..+.+.
T Consensus 124 ~~~~~-~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 124 HRKKN-LQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred HHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 77777 5699999999999999999999999765
No 28
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.91 E-value=6.3e-23 Score=140.87 Aligned_cols=112 Identities=32% Similarity=0.580 Sum_probs=99.6
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..++++++++++|||++++.||..+..|+..+.... ..+|+++|+||+|+.. ..+..++...
T Consensus 61 D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~-----~~~piivVgNK~Dl~~~~~~~~~~~~~ 135 (199)
T cd04110 61 DTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNC-----DDVCKVLVGNKNDDPERKVVETEDAYK 135 (199)
T ss_pred eCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECcccccccccCHHHHHH
Confidence 899999999999999999999999999999999999999999886433 5789999999999976 5567788888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhCCC
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQ 118 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~~ 118 (142)
++...+ .+++++||+++.||+++|.+|...++......
T Consensus 136 ~~~~~~-~~~~e~Sa~~~~gi~~lf~~l~~~~~~~~~~~ 173 (199)
T cd04110 136 FAGQMG-ISLFETSAKENINVEEMFNCITELVLRAKKDN 173 (199)
T ss_pred HHHHcC-CEEEEEECCCCcCHHHHHHHHHHHHHHhhhcc
Confidence 888888 56999999999999999999999999865443
No 29
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.91 E-value=3.2e-23 Score=139.81 Aligned_cols=110 Identities=34% Similarity=0.536 Sum_probs=98.2
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++++|||++++.||..+..|+..+.... ..++.|+++|+||+|+.+ +.+..++...
T Consensus 69 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piiiv~nK~Dl~~~~~v~~~~~~~ 145 (180)
T cd04127 69 DTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHA---YCENPDIVLCGNKADLEDQRQVSEEQAKA 145 (180)
T ss_pred eCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCcEEEEEeCccchhcCccCHHHHHH
Confidence 899999999999999999999999999999999999999999886332 335789999999999976 6677888899
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
+++.++ .+++++||+++.|++++|.+|+..++++
T Consensus 146 ~~~~~~-~~~~e~Sak~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 146 LADKYG-IPYFETSAATGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred HHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 999988 5799999999999999999999988754
No 30
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.91 E-value=4.8e-23 Score=137.42 Aligned_cols=108 Identities=29% Similarity=0.479 Sum_probs=96.3
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++|+|||++++.||+.+..|+..+... ..++.|+++|+||+|+.. +.+..+.+..
T Consensus 57 Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~----~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~ 132 (166)
T cd04122 57 DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNL----TNPNTVIFLIGNKADLEAQRDVTYEEAKQ 132 (166)
T ss_pred ECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEECcccccccCcCHHHHHH
Confidence 89999999999999999999999999999999999999999887532 235789999999999976 5677888888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
+++..+ .++++|||++|.|++++|..++..+.+
T Consensus 133 ~~~~~~-~~~~e~Sa~~~~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 133 FADENG-LLFLECSAKTGENVEDAFLETAKKIYQ 165 (166)
T ss_pred HHHHcC-CEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 998888 569999999999999999999988754
No 31
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.90 E-value=1.3e-22 Score=141.28 Aligned_cols=111 Identities=17% Similarity=0.297 Sum_probs=96.8
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC----------
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNT-LKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---------- 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---------- 69 (142)
||+|++.|..+++.+|+++|++|+|||++++.||+.+ ..|...+...+ +++|+|||+||+|+..
T Consensus 55 Dt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~-----~~~piiLVgnK~DL~~~~~~~~~~~~ 129 (222)
T cd04173 55 DTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC-----PNAKVVLVGCKLDMRTDLATLRELSK 129 (222)
T ss_pred eCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-----CCCCEEEEEECcccccchhhhhhhhh
Confidence 8999999999999999999999999999999999998 57877765433 6899999999999853
Q ss_pred ---CCCCHHHHHHHHHHcCCceEEEeeccCCCC-HHHHHHHHHHHHHHHhC
Q psy10891 70 ---RQVDINDIECFYKEHNFIGWTETSTKEGLM-VNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 70 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-i~~l~~~l~~~~~~~~~ 116 (142)
..+..+.+..+++..+..+|++|||+++.+ |+++|..++..++.+..
T Consensus 130 ~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~~~~ 180 (222)
T cd04173 130 QRLIPVTHEQGTVLAKQVGAVSYVECSSRSSERSVRDVFHVATVASLGRGH 180 (222)
T ss_pred ccCCccCHHHHHHHHHHcCCCEEEEcCCCcCCcCHHHHHHHHHHHHHhccC
Confidence 136778899999999966899999999985 99999999998887554
No 32
>KOG0086|consensus
Probab=99.90 E-value=1.8e-23 Score=134.49 Aligned_cols=110 Identities=30% Similarity=0.494 Sum_probs=100.8
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||||+|++..+.||++|.++++|||+++.+||..+-+|+..++ ....+++.+||++||.|+.. +.++..+...
T Consensus 64 DTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR----~lAs~nIvviL~GnKkDL~~~R~VtflEAs~ 139 (214)
T KOG0086|consen 64 DTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDAR----TLASPNIVVILCGNKKDLDPEREVTFLEASR 139 (214)
T ss_pred ecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHH----hhCCCcEEEEEeCChhhcChhhhhhHHHHHh
Confidence 899999999999999999999999999999999999999999884 33457888999999999988 8899999999
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
++++..+. +.++|+++|+++++.|-...+.++.+-
T Consensus 140 FaqEnel~-flETSa~TGeNVEEaFl~c~~tIl~kI 174 (214)
T KOG0086|consen 140 FAQENELM-FLETSALTGENVEEAFLKCARTILNKI 174 (214)
T ss_pred hhccccee-eeeecccccccHHHHHHHHHHHHHHHH
Confidence 99998865 999999999999999999999988653
No 33
>PTZ00369 Ras-like protein; Provisional
Probab=99.90 E-value=9.3e-23 Score=138.94 Aligned_cols=112 Identities=26% Similarity=0.448 Sum_probs=98.0
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..|++++|++++|||++++.||+.+..|+..+.+. ....++|+++|+||+|+.. +.+...+...
T Consensus 59 Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~---~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~ 135 (189)
T PTZ00369 59 DTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRV---KDKDRVPMILVGNKCDLDSERQVSTGEGQE 135 (189)
T ss_pred eCCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh---cCCCCCCEEEEEECcccccccccCHHHHHH
Confidence 89999999999999999999999999999999999999999888633 2445899999999999865 5567777777
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 116 (142)
++..++ .+++++||+++.|+.++|.+|++.+.+...
T Consensus 136 ~~~~~~-~~~~e~Sak~~~gi~~~~~~l~~~l~~~~~ 171 (189)
T PTZ00369 136 LAKSFG-IPFLETSAKQRVNVDEAFYELVREIRKYLK 171 (189)
T ss_pred HHHHhC-CEEEEeeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 888877 579999999999999999999999877644
No 34
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.90 E-value=7.2e-23 Score=138.00 Aligned_cols=106 Identities=18% Similarity=0.345 Sum_probs=92.2
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC----------
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---------- 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---------- 69 (142)
||||+++|..++..+++++|++|+|||++++.||+.+. .|+..+.... +++|+|||+||+|+..
T Consensus 55 Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~-----~~~piilvgnK~Dl~~~~~~~~~l~~ 129 (175)
T cd01874 55 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQIDLRDDPSTIEKLAK 129 (175)
T ss_pred ECCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECHhhhhChhhHHHhhh
Confidence 89999999999999999999999999999999999986 5988886432 5799999999999843
Q ss_pred ---CCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 70 ---RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 70 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
+.+..+++..+++..+..+|++|||++|.|++++|..++..+
T Consensus 130 ~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 130 NKQKPITPETGEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred ccCCCcCHHHHHHHHHHhCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 346677788888888756799999999999999999998754
No 35
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.90 E-value=1.1e-22 Score=134.85 Aligned_cols=107 Identities=27% Similarity=0.480 Sum_probs=94.1
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..+++.+++++|++++|||++++.|++.+..|+..+... ....++|+++|+||+|+.. +.+..+....
T Consensus 55 Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~---~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 131 (163)
T cd04136 55 DTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRV---KDTENVPMVLVGNKCDLEDERVVSREEGQA 131 (163)
T ss_pred ECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHh---cCCCCCCEEEEEECccccccceecHHHHHH
Confidence 89999999999999999999999999999999999999999888633 2346799999999999865 5566777777
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
+++.++ .+++++||+++.|+.++|.++++.+
T Consensus 132 ~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 132 LARQWG-CPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred HHHHcC-CeEEEecCCCCCCHHHHHHHHHHhc
Confidence 888888 6799999999999999999998765
No 36
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.90 E-value=3.9e-22 Score=136.06 Aligned_cols=110 Identities=35% Similarity=0.537 Sum_probs=97.5
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++|+|||++++.|++.+..|+..+.... ..++|+++|+||+|+.. +.+..++...
T Consensus 56 Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~----~~~~piiiv~NK~Dl~~~~~~~~~~~~~ 131 (191)
T cd04112 56 DTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYA----QEDVVIMLLGNKADMSGERVVKREDGER 131 (191)
T ss_pred eCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC----CCCCcEEEEEEcccchhccccCHHHHHH
Confidence 899999999999999999999999999999999999999998886432 34789999999999964 5566778888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
++..++ .+++++||++|.|++++|.+|++.+....
T Consensus 132 l~~~~~-~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~ 166 (191)
T cd04112 132 LAKEYG-VPFMETSAKTGLNVELAFTAVAKELKHRK 166 (191)
T ss_pred HHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 888887 57999999999999999999999998774
No 37
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.90 E-value=2.5e-22 Score=134.26 Aligned_cols=110 Identities=27% Similarity=0.513 Sum_probs=96.6
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|..++..+++++|++++|||++++.|++.+..|+..+..........++|+++|+||+|+..+.+..+++..+
T Consensus 60 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 139 (170)
T cd04116 60 DTAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAW 139 (170)
T ss_pred eCCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHH
Confidence 89999999999999999999999999999999999999999887644322223579999999999997666778889999
Q ss_pred HHHcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891 81 YKEHNFIGWTETSTKEGLMVNDSMKFLLDV 110 (142)
Q Consensus 81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 110 (142)
+..++..+++++||+++.|+.++|..+++.
T Consensus 140 ~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 140 CRENGDYPYFETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred HHHCCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence 998886679999999999999999999864
No 38
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.90 E-value=1.4e-22 Score=141.16 Aligned_cols=108 Identities=31% Similarity=0.538 Sum_probs=94.5
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|..++..|++++|++|+|||++++.||..+..|+..+...+ .++|++||+||+|+..+.+..+.+ .+
T Consensus 68 Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~-----~~~piilvgNK~Dl~~~~v~~~~~-~~ 141 (219)
T PLN03071 68 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAKQV-TF 141 (219)
T ss_pred ECCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC-----CCCcEEEEEEchhhhhccCCHHHH-HH
Confidence 899999999999999999999999999999999999999999987543 679999999999986555555555 66
Q ss_pred HHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 81 YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
+...+ .+|++|||++|.|+.++|.+|+..+.+..
T Consensus 142 ~~~~~-~~~~e~SAk~~~~i~~~f~~l~~~~~~~~ 175 (219)
T PLN03071 142 HRKKN-LQYYEISAKSNYNFEKPFLYLARKLAGDP 175 (219)
T ss_pred HHhcC-CEEEEcCCCCCCCHHHHHHHHHHHHHcCc
Confidence 66666 56999999999999999999999987653
No 39
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.90 E-value=1.5e-22 Score=137.97 Aligned_cols=110 Identities=25% Similarity=0.401 Sum_probs=94.7
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-C--------
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-R-------- 70 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~-------- 70 (142)
||||+++|..+++.+++++|++++|||++++.||+.+. .|+..+.... +++|++||+||+|+.. +
T Consensus 54 Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~-----~~~piilvgNK~Dl~~~~~~~~~~~~ 128 (189)
T cd04134 54 DTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHC-----PGVKLVLVALKCDLREARNERDDLQR 128 (189)
T ss_pred ECCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEEChhhccChhhHHHHhh
Confidence 89999999999999999999999999999999999886 6988886433 5799999999999864 2
Q ss_pred ----CCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 71 ----QVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 71 ----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
.+..++...++...+..+|++|||++|.|++++|.++++.++...
T Consensus 129 ~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~e~f~~l~~~~~~~~ 177 (189)
T cd04134 129 YGKHTISYEEGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVALNVR 177 (189)
T ss_pred ccCCCCCHHHHHHHHHHcCCCEEEEccCCcCCCHHHHHHHHHHHHhccc
Confidence 245566777888877667999999999999999999999998654
No 40
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.89 E-value=5.9e-22 Score=137.24 Aligned_cols=112 Identities=30% Similarity=0.546 Sum_probs=99.6
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++++|||++++.||+.+..|+..+.... .....|+++|+||+|+.. +.+..+....
T Consensus 58 Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~---~~~~~~iilvgNK~Dl~~~~~v~~~~~~~ 134 (211)
T cd04111 58 DTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHI---QPHRPVFILVGHKCDLESQRQVTREEAEK 134 (211)
T ss_pred eCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCeEEEEEEccccccccccCHHHHHH
Confidence 899999999999999999999999999999999999999999886432 334678999999999976 6678888889
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 116 (142)
+++.++ .+++++||+++.|++++|..|++.+.++..
T Consensus 135 ~~~~~~-~~~~e~Sak~g~~v~e~f~~l~~~~~~~~~ 170 (211)
T cd04111 135 LAKDLG-MKYIETSARTGDNVEEAFELLTQEIYERIK 170 (211)
T ss_pred HHHHhC-CEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 999988 679999999999999999999999887743
No 41
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.89 E-value=1.6e-22 Score=136.25 Aligned_cols=105 Identities=23% Similarity=0.343 Sum_probs=92.2
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC----------
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---------- 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---------- 69 (142)
||||+++|..+++.+++++|++|+|||++++.||..+. .|+..+.... +++|+++|+||+|+..
T Consensus 55 Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~-----~~~piilvgnK~Dl~~~~~~~~~~~~ 129 (174)
T cd01871 55 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKLDLRDDKDTIEKLKE 129 (174)
T ss_pred ECCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEeeChhhccChhhHHHHhh
Confidence 89999999999999999999999999999999999985 6888775332 5799999999999853
Q ss_pred ---CCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891 70 ---RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDV 110 (142)
Q Consensus 70 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 110 (142)
+.+..+++..+++.++..++++|||++|.|++++|..+++.
T Consensus 130 ~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 130 KKLTPITYPQGLAMAKEIGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred ccCCCCCHHHHHHHHHHcCCcEEEEecccccCCHHHHHHHHHHh
Confidence 13678888889999986679999999999999999998764
No 42
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.89 E-value=1.6e-22 Score=138.48 Aligned_cols=102 Identities=22% Similarity=0.294 Sum_probs=89.1
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC----------
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---------- 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---------- 69 (142)
||||+++ .+.+.+++++|++++|||++++.||+.+. .|+..+...+ +++|++||+||+|+..
T Consensus 72 DTaG~~~--~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-----~~~piilvgNK~DL~~~~~~~~~~~~ 144 (195)
T cd01873 72 DTFGDHD--KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-----PRVPVILVGCKLDLRYADLDEVNRAR 144 (195)
T ss_pred eCCCChh--hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-----CCCCEEEEEEchhccccccchhhhcc
Confidence 8999986 35677999999999999999999999986 5988886443 5789999999999852
Q ss_pred ----------CCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891 70 ----------RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDV 110 (142)
Q Consensus 70 ----------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 110 (142)
+.+..+++..+++.+++ +|++|||++|.||+++|..++++
T Consensus 145 ~~~~~~~~~~~~V~~~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 145 RPLARPIKNADILPPETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred cccccccccCCccCHHHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHHh
Confidence 56788999999999995 79999999999999999998864
No 43
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.89 E-value=2.8e-22 Score=133.31 Aligned_cols=107 Identities=27% Similarity=0.471 Sum_probs=94.0
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++++|||++++.||+.+..|+..+... ....+.|+++|+||+|+.. +.+.......
T Consensus 55 Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~---~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 131 (164)
T cd04175 55 DTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRV---KDTEDVPMILVGNKCDLEDERVVGKEQGQN 131 (164)
T ss_pred ECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHh---cCCCCCCEEEEEECCcchhccEEcHHHHHH
Confidence 89999999999999999999999999999999999999999888632 2446899999999999975 4556667777
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
+++.++ .+++++||+++.|+.++|.+++..+
T Consensus 132 ~~~~~~-~~~~~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 132 LARQWG-CAFLETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred HHHHhC-CEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 888887 5799999999999999999998765
No 44
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.89 E-value=5.6e-22 Score=132.41 Aligned_cols=108 Identities=32% Similarity=0.574 Sum_probs=96.4
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++++|||++++.||..+..|+..+.+. ...++|+++|+||+|+.+ +.+..++...
T Consensus 58 D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~ 133 (167)
T cd01867 58 DTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEH----ASEDVERMLVGNKCDMEEKRVVSKEEGEA 133 (167)
T ss_pred eCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHh----CCCCCcEEEEEECcccccccCCCHHHHHH
Confidence 89999999999999999999999999999999999999999988643 235789999999999976 5567778888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
++..++ .+++++||+++.|++++|.++++.+..
T Consensus 134 ~~~~~~-~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 134 LADEYG-IKFLETSAKANINVEEAFFTLAKDIKK 166 (167)
T ss_pred HHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 888888 579999999999999999999998864
No 45
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.89 E-value=2.3e-22 Score=134.89 Aligned_cols=108 Identities=24% Similarity=0.373 Sum_probs=94.6
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-C--------
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-R-------- 70 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~-------- 70 (142)
||||+++|..+++.+++++|++|+|||++++.||+.+. .|+..+.... +++|+++|+||+|+.. .
T Consensus 52 Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~ 126 (174)
T smart00174 52 DTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC-----PNTPIILVGTKLDLREDKSTLRELSK 126 (174)
T ss_pred ECCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-----CCCCEEEEecChhhhhChhhhhhhhc
Confidence 89999999999999999999999999999999999985 6988886433 6899999999999854 1
Q ss_pred ----CCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 71 ----QVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 71 ----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
.+..++...+++.++..++++|||+++.|++++|..++..+++
T Consensus 127 ~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~l~~~~~~ 173 (174)
T smart00174 127 QKQEPVTYEQGEALAKRIGAVKYLECSALTQEGVREVFEEAIRAALN 173 (174)
T ss_pred ccCCCccHHHHHHHHHHcCCcEEEEecCCCCCCHHHHHHHHHHHhcC
Confidence 2667778889999986679999999999999999999988753
No 46
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.89 E-value=6.5e-22 Score=131.79 Aligned_cols=108 Identities=36% Similarity=0.610 Sum_probs=95.8
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++++|||++++.||..+..|+..+.... ..+.|+++|+||+|+.. +.+..+....
T Consensus 57 D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~----~~~~~~iiv~nK~Dl~~~~~~~~~~~~~ 132 (166)
T cd01869 57 DTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYA----SENVNKLLVGNKCDLTDKRVVDYSEAQE 132 (166)
T ss_pred ECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhC----CCCCcEEEEEEChhcccccCCCHHHHHH
Confidence 899999999999999999999999999999999999999999886332 35789999999999865 5677788888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
++...+ .+++++||++|.|++++|..+++.+.+
T Consensus 133 ~~~~~~-~~~~~~Sa~~~~~v~~~~~~i~~~~~~ 165 (166)
T cd01869 133 FADELG-IPFLETSAKNATNVEQAFMTMAREIKK 165 (166)
T ss_pred HHHHcC-CeEEEEECCCCcCHHHHHHHHHHHHHh
Confidence 888888 579999999999999999999988753
No 47
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.89 E-value=1e-21 Score=136.32 Aligned_cols=112 Identities=28% Similarity=0.288 Sum_probs=98.3
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||++.|..++..|++++|++|+|||++++.||+.+..|+..+.+... ....++|+++|+||+|+.. +.+..+....
T Consensus 56 Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~-~~~~~~piilVgNK~DL~~~~~v~~~~~~~ 134 (215)
T cd04109 56 DIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLK-SSETQPLVVLVGNKTDLEHNRTVKDDKHAR 134 (215)
T ss_pred ECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcc-ccCCCceEEEEEECcccccccccCHHHHHH
Confidence 8999999999999999999999999999999999999999998875431 1124578999999999975 6778888888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
+++.++ .+++++||++|.|++++|.+++..+...
T Consensus 135 ~~~~~~-~~~~~iSAktg~gv~~lf~~l~~~l~~~ 168 (215)
T cd04109 135 FAQANG-MESCLVSAKTGDRVNLLFQQLAAELLGV 168 (215)
T ss_pred HHHHcC-CEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 999888 5699999999999999999999998865
No 48
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.89 E-value=4.5e-22 Score=132.13 Aligned_cols=107 Identities=27% Similarity=0.440 Sum_probs=92.9
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..|++++|++++|||++++.||..+..|+..+... ....++|+++|+||+|+.. +.+.......
T Consensus 55 Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~piviv~nK~Dl~~~~~~~~~~~~~ 131 (163)
T cd04176 55 DTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRV---KGYEKVPIILVGNKVDLESEREVSSAEGRA 131 (163)
T ss_pred ECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHh---cCCCCCCEEEEEECccchhcCccCHHHHHH
Confidence 89999999999999999999999999999999999999998888633 2336899999999999865 5556667777
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
++..++ .+++++||+++.|+.++|.++++.+
T Consensus 132 ~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd04176 132 LAEEWG-CPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred HHHHhC-CEEEEecCCCCCCHHHHHHHHHHhc
Confidence 887777 5799999999999999999998654
No 49
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.89 E-value=9.2e-22 Score=131.14 Aligned_cols=108 Identities=31% Similarity=0.545 Sum_probs=94.8
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++++|||++++.+++.+..|+..+... ....+|+++|+||+|+.+ +.+..+....
T Consensus 56 Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piivv~nK~Dl~~~~~~~~~~~~~ 131 (165)
T cd01865 56 DTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTY----SWDNAQVILVGNKCDMEDERVVSSERGRQ 131 (165)
T ss_pred ECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHh----CCCCCCEEEEEECcccCcccccCHHHHHH
Confidence 89999999999999999999999999999999999999999988532 234789999999999976 5566777778
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
++...+. +++++||+++.|+.++|.+++..+.+
T Consensus 132 ~~~~~~~-~~~~~Sa~~~~gv~~l~~~l~~~~~~ 164 (165)
T cd01865 132 LADQLGF-EFFEASAKENINVKQVFERLVDIICD 164 (165)
T ss_pred HHHHcCC-EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 8888874 69999999999999999999987653
No 50
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.89 E-value=5.7e-22 Score=131.80 Aligned_cols=105 Identities=30% Similarity=0.493 Sum_probs=94.0
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||+|+++|..++..+++++|++++|||++++.||+.+..|+..+... ...++|+++|+||.|+.. +.+..++...
T Consensus 55 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~----~~~~~~iilvgnK~Dl~~~~~v~~~~~~~ 130 (161)
T cd04117 55 DTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEY----APEGVQKILIGNKADEEQKRQVGDEQGNK 130 (161)
T ss_pred eCCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEECcccccccCCCHHHHHH
Confidence 89999999999999999999999999999999999999999988532 234799999999999976 6677888888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDV 110 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 110 (142)
+++.++ .+|+++||++|.|++++|.+|++.
T Consensus 131 ~~~~~~-~~~~e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 131 LAKEYG-MDFFETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred HHHHcC-CEEEEEeCCCCCCHHHHHHHHHhh
Confidence 998888 679999999999999999999864
No 51
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.89 E-value=1.8e-21 Score=132.40 Aligned_cols=111 Identities=31% Similarity=0.556 Sum_probs=98.1
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++++|||++++.||..+..|+..+.... ...+|+++|+||+|+.+ +.+..+....
T Consensus 55 Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~----~~~~~~ivv~nK~Dl~~~~~v~~~~~~~ 130 (188)
T cd04125 55 DTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYA----RENVIKVIVANKSDLVNNKVVDSNIAKS 130 (188)
T ss_pred ECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC----CCCCeEEEEEECCCCcccccCCHHHHHH
Confidence 899999999999999999999999999999999999999999886432 34689999999999875 5667777788
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 116 (142)
++...++ +++++||+++.|++++|.+++..++++..
T Consensus 131 ~~~~~~~-~~~evSa~~~~~i~~~f~~l~~~~~~~~~ 166 (188)
T cd04125 131 FCDSLNI-PFFETSAKQSINVEEAFILLVKLIIKRLE 166 (188)
T ss_pred HHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 8888874 79999999999999999999999988654
No 52
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.88 E-value=1.4e-21 Score=132.69 Aligned_cols=111 Identities=27% Similarity=0.423 Sum_probs=97.3
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-----CCCCH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-----RQVDI 74 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-----~~~~~ 74 (142)
||||+++|..+++.+++++|++++|||++++.||+.+. .|+..+.... +++|+|+|+||+|+.. +.+..
T Consensus 55 Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~v~~ 129 (187)
T cd04132 55 DTAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFC-----PGTPIMLVGLKTDLRKDKNLDRKVTP 129 (187)
T ss_pred ECCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEeChhhhhCccccCCcCH
Confidence 89999999999999999999999999999999999985 5888775433 5799999999999854 23567
Q ss_pred HHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891 75 NDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 116 (142)
.....++..++..+++++||++|.|+.++|..++..++....
T Consensus 130 ~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~ 171 (187)
T cd04132 130 AQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEALKKEG 171 (187)
T ss_pred HHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHHhhhh
Confidence 788889999886579999999999999999999999998754
No 53
>KOG0097|consensus
Probab=99.88 E-value=6.3e-22 Score=126.08 Aligned_cols=112 Identities=28% Similarity=0.468 Sum_probs=102.1
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||+|||+|+..+++||+++.+.++|||++...++..+..|+... +....++..++|++||.|+.. +.++-++..+
T Consensus 66 dtagqerfravtrsyyrgaagalmvyditrrstynhlsswl~da----r~ltnpnt~i~lignkadle~qrdv~yeeak~ 141 (215)
T KOG0097|consen 66 DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDA----RNLTNPNTVIFLIGNKADLESQRDVTYEEAKE 141 (215)
T ss_pred ecccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhh----hccCCCceEEEEecchhhhhhcccCcHHHHHH
Confidence 89999999999999999999999999999999999999999887 445668888999999999987 8899999999
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhCC
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGL 117 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~ 117 (142)
++.+.|.. |+++||++|.++++.|-...+.+.++-..
T Consensus 142 faeengl~-fle~saktg~nvedafle~akkiyqniqd 178 (215)
T KOG0097|consen 142 FAEENGLM-FLEASAKTGQNVEDAFLETAKKIYQNIQD 178 (215)
T ss_pred HHhhcCeE-EEEecccccCcHHHHHHHHHHHHHHhhhc
Confidence 99999965 99999999999999999999888876433
No 54
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.88 E-value=1.3e-21 Score=130.37 Aligned_cols=106 Identities=32% Similarity=0.565 Sum_probs=94.3
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++++|||++++.|+..+..|+..+... ...++|+++|+||+|+.. +.+..+....
T Consensus 58 D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~----~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~ 133 (165)
T cd01864 58 DTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKY----GASNVVLLLIGNKCDLEEQREVLFEEACT 133 (165)
T ss_pred ECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHh----CCCCCcEEEEEECcccccccccCHHHHHH
Confidence 89999999999999999999999999999999999999999998532 235799999999999976 5667778888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDV 110 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 110 (142)
+++.++...++++||++|.|++++|..+++.
T Consensus 134 ~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 134 LAEKNGMLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred HHHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 8888886678999999999999999999865
No 55
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.88 E-value=1.6e-21 Score=129.21 Aligned_cols=104 Identities=31% Similarity=0.587 Sum_probs=93.1
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++++|||++++.|+..+..|+..+.... .++|+++|+||+|+.. ..+..+++..
T Consensus 57 D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~-----~~~p~iiv~nK~Dl~~~~~v~~~~~~~ 131 (162)
T cd04106 57 DTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAEC-----GDIPMVLVQTKIDLLDQAVITNEEAEA 131 (162)
T ss_pred eCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEEChhcccccCCCHHHHHH
Confidence 899999999999999999999999999999999999999998886433 6899999999999865 5667778888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDV 110 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 110 (142)
+++..+ .+++++||+++.|++++|.+|...
T Consensus 132 ~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 132 LAKRLQ-LPLFRTSVKDDFNVTELFEYLAEK 161 (162)
T ss_pred HHHHcC-CeEEEEECCCCCCHHHHHHHHHHh
Confidence 888888 479999999999999999998754
No 56
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.88 E-value=1.8e-21 Score=128.59 Aligned_cols=107 Identities=26% Similarity=0.449 Sum_probs=93.5
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|..++..|++++|++++|||++++.++..+..|+..+.+.. ...++|+++|+||+|+..+.+.......+
T Consensus 55 Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~---~~~~~piivv~nK~Dl~~~~~~~~~~~~~ 131 (162)
T cd04138 55 DTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVK---DSDDVPMVLVGNKCDLAARTVSSRQGQDL 131 (162)
T ss_pred ECCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECcccccceecHHHHHHH
Confidence 899999999999999999999999999999999999999988886432 44679999999999997655667777788
Q ss_pred HHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 81 YKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
+...+ .+++++||++|.|++++|.++++.+
T Consensus 132 ~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 132 AKSYG-IPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred HHHhC-CeEEEecCCCCCCHHHHHHHHHHHh
Confidence 88877 4699999999999999999998653
No 57
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.88 E-value=1.6e-21 Score=129.41 Aligned_cols=107 Identities=30% Similarity=0.490 Sum_probs=93.6
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..+++.+++++|++++|||++++.++..+..|+..+.+.. ...++|+++|+||+|+.. +.+..+....
T Consensus 56 Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piiiv~NK~Dl~~~~~~~~~~~~~ 132 (164)
T cd04145 56 DTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVK---DRDEFPMILVGNKADLEHQRKVSREEGQE 132 (164)
T ss_pred ECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHh---CCCCCCEEEEeeCccccccceecHHHHHH
Confidence 899999999999999999999999999999999999999998886432 345789999999999865 4566677788
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
++...+ .+++++||++|.|+.++|.+++..+
T Consensus 133 ~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 133 LARKLK-IPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred HHHHcC-CcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 888887 4699999999999999999998764
No 58
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.88 E-value=3.1e-21 Score=129.46 Aligned_cols=109 Identities=28% Similarity=0.371 Sum_probs=92.1
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-C--CCCHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-R--QVDINDI 77 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~--~~~~~~~ 77 (142)
||||+++|..++..+++++|++++|||++++.|+..+..|+..+... ......|+++|+||.|+.. . .+..+.+
T Consensus 55 Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~---~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~ 131 (170)
T cd04108 55 DTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKE---NDPSSVLLFLVGTKKDLSSPAQYALMEQDA 131 (170)
T ss_pred eCCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh---cCCCCCeEEEEEEChhcCccccccccHHHH
Confidence 89999999999999999999999999999999999999999887532 1233578999999999854 2 2345666
Q ss_pred HHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 78 ECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 78 ~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
..++..++ .+++++||+++.|++++|..++..+.+
T Consensus 132 ~~~~~~~~-~~~~e~Sa~~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 132 IKLAAEMQ-AEYWSVSALSGENVREFFFRVAALTFE 166 (170)
T ss_pred HHHHHHcC-CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 77777777 469999999999999999999988854
No 59
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.88 E-value=2.5e-21 Score=128.68 Aligned_cols=106 Identities=32% Similarity=0.513 Sum_probs=90.8
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|..+++.+++++|++++|||++++.++..+..|+..+.... +++|+++|+||+|+... ..+....+
T Consensus 55 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-----~~~p~ivv~nK~Dl~~~--~~~~~~~~ 127 (161)
T cd04124 55 DTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYR-----PEIPCIVVANKIDLDPS--VTQKKFNF 127 (161)
T ss_pred eCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-----CCCcEEEEEECccCchh--HHHHHHHH
Confidence 899999999999999999999999999999999999999999886433 57999999999998431 23344456
Q ss_pred HHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 81 YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
+...+ .+++++||++|.|++++|..+++.++++
T Consensus 128 ~~~~~-~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 160 (161)
T cd04124 128 AEKHN-LPLYYVSAADGTNVVKLFQDAIKLAVSY 160 (161)
T ss_pred HHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 66666 5799999999999999999999988765
No 60
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.88 E-value=7.6e-21 Score=129.67 Aligned_cols=110 Identities=31% Similarity=0.486 Sum_probs=94.8
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-----CCCCHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-----RQVDIN 75 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-----~~~~~~ 75 (142)
||||+++|..++..+++++|++++|||++++.|++.+..|+..+.... .++|+++|+||+|+.. +.+..+
T Consensus 56 D~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~~~~~~~~~v~~~ 130 (193)
T cd04118 56 DTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLE-----EHCKIYLCGTKSDLIEQDRSLRQVDFH 130 (193)
T ss_pred ECCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcC-----CCCCEEEEEEcccccccccccCccCHH
Confidence 899999999999999999999999999999999999999998885322 4799999999999853 234556
Q ss_pred HHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891 76 DIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 76 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 116 (142)
.+..++..++ .+++++||+++.|++++|+++.+.+.++..
T Consensus 131 ~~~~~~~~~~-~~~~~~Sa~~~~gv~~l~~~i~~~~~~~~~ 170 (193)
T cd04118 131 DVQDFADEIK-AQHFETSSKTGQNVDELFQKVAEDFVSRAN 170 (193)
T ss_pred HHHHHHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence 6777788777 569999999999999999999999987643
No 61
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.88 E-value=2.5e-21 Score=128.61 Aligned_cols=108 Identities=27% Similarity=0.465 Sum_probs=94.5
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++++|||++++.++..+..|+..+.+.. ...++|+++|+||+|+.. +.+..+....
T Consensus 54 Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~pii~v~nK~Dl~~~~~~~~~~~~~ 130 (164)
T smart00173 54 DTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVK---DRDDVPIVLVGNKCDLESERVVSTEEGKE 130 (164)
T ss_pred ECCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECccccccceEcHHHHHH
Confidence 899999999999999999999999999999999999999988876432 335789999999999876 5566677778
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
++..++ .+++++||+++.|++++|++|+..+.
T Consensus 131 ~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 131 LARQWG-CPFLETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred HHHHcC-CEEEEeecCCCCCHHHHHHHHHHHHh
Confidence 888887 67999999999999999999998764
No 62
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.87 E-value=2.7e-21 Score=129.26 Aligned_cols=106 Identities=31% Similarity=0.532 Sum_probs=91.3
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|..++..++.++|++|+|||++++.|+..+..|+..+.... .++|+++|+||+|+..+.+.. ....+
T Consensus 55 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-----~~~piiiv~nK~Dl~~~~~~~-~~~~~ 128 (166)
T cd00877 55 DTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----GNIPIVLCGNKVDIKDRKVKA-KQITF 128 (166)
T ss_pred ECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-----CCCcEEEEEEchhcccccCCH-HHHHH
Confidence 899999999999999999999999999999999999999999997544 489999999999987533333 33456
Q ss_pred HHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 81 YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
+...+ .+++++||++|.|++++|.+|+..+.+
T Consensus 129 ~~~~~-~~~~e~Sa~~~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 129 HRKKN-LQYYEISAKSNYNFEKPFLWLARKLLG 160 (166)
T ss_pred HHHcC-CEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence 66655 569999999999999999999999875
No 63
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.87 E-value=2.8e-21 Score=128.36 Aligned_cols=111 Identities=23% Similarity=0.402 Sum_probs=95.8
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhccc-CCCCCCCEEEEEeCCCCCC-CCCCHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTL-SDGSPIPCMLLANKCDLPH-RQVDINDIE 78 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~p~ilv~nK~D~~~-~~~~~~~~~ 78 (142)
||||+++|..++..+++++|++|+|||++++.|+..+..|+..+...... ....+.|+++|+||+|+.. +.+..+...
T Consensus 55 Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~ 134 (168)
T cd04119 55 DLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGR 134 (168)
T ss_pred ECCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHH
Confidence 89999999999999999999999999999999999999999988754310 0125689999999999964 556788888
Q ss_pred HHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 79 CFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 79 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
.++...+ .+++++||+++.|++++|..|++.++
T Consensus 135 ~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~l~ 167 (168)
T cd04119 135 LWAESKG-FKYFETSACTGEGVNEMFQTLFSSIV 167 (168)
T ss_pred HHHHHcC-CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 8888888 56999999999999999999998875
No 64
>PLN03110 Rab GTPase; Provisional
Probab=99.87 E-value=5.4e-21 Score=132.89 Aligned_cols=110 Identities=29% Similarity=0.499 Sum_probs=97.6
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..++++++++|+|||++++.||+.+..|+..+... ...++|+++|+||+|+.. +.+..+....
T Consensus 67 Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~----~~~~~piiiv~nK~Dl~~~~~~~~~~~~~ 142 (216)
T PLN03110 67 DTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDH----ADSNIVIMMAGNKSDLNHLRSVAEEDGQA 142 (216)
T ss_pred ECCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHh----CCCCCeEEEEEEChhcccccCCCHHHHHH
Confidence 89999999999999999999999999999999999999999888533 235799999999999865 6677788888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
++..++ .+++++||++|.|++++|..++..+.+..
T Consensus 143 l~~~~~-~~~~e~SA~~g~~v~~lf~~l~~~i~~~~ 177 (216)
T PLN03110 143 LAEKEG-LSFLETSALEATNVEKAFQTILLEIYHII 177 (216)
T ss_pred HHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 888887 57999999999999999999999988743
No 65
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.87 E-value=2.4e-21 Score=128.45 Aligned_cols=107 Identities=32% Similarity=0.590 Sum_probs=98.8
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||+|+++|..++..+++++|++|+|||++++.||..+..|+..+.... ..++|++||+||.|+.. +.+..+++..
T Consensus 54 D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~----~~~~~iivvg~K~D~~~~~~v~~~~~~~ 129 (162)
T PF00071_consen 54 DTSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYK----PEDIPIIVVGNKSDLSDEREVSVEEAQE 129 (162)
T ss_dssp EETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHS----TTTSEEEEEEETTTGGGGSSSCHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc----cccccceeeeccccccccccchhhHHHH
Confidence 789999999999999999999999999999999999999999997555 14689999999999986 7889999999
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
+++.++ .+|++|||+++.|+.++|..+++.+.
T Consensus 130 ~~~~~~-~~~~e~Sa~~~~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 130 FAKELG-VPYFEVSAKNGENVKEIFQELIRKIL 161 (162)
T ss_dssp HHHHTT-SEEEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred HHHHhC-CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 999999 78999999999999999999998875
No 66
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.87 E-value=2.8e-21 Score=131.06 Aligned_cols=107 Identities=22% Similarity=0.295 Sum_probs=90.5
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC------CCCCH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH------RQVDI 74 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~------~~~~~ 74 (142)
||+|+++|..+++.+++++|++++|||++++.||..+..|+..+.... ....| |+|+||+|+.. .....
T Consensus 55 Dt~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~----~~~~p-ilVgnK~Dl~~~~~~~~~~~~~ 129 (182)
T cd04128 55 DLGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFN----KTAIP-ILVGTKYDLFADLPPEEQEEIT 129 (182)
T ss_pred eCCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC----CCCCE-EEEEEchhccccccchhhhhhH
Confidence 899999999999999999999999999999999999999999886432 23456 68999999842 11224
Q ss_pred HHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 75 NDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
+....+++.++ .++++|||++|.|++++|.+++..+++
T Consensus 130 ~~~~~~a~~~~-~~~~e~SAk~g~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 130 KQARKYAKAMK-APLIFCSTSHSINVQKIFKIVLAKAFD 167 (182)
T ss_pred HHHHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 56677888888 579999999999999999999998875
No 67
>KOG0095|consensus
Probab=99.87 E-value=2.4e-22 Score=128.91 Aligned_cols=110 Identities=31% Similarity=0.447 Sum_probs=96.9
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||||||++++.+||+.|+++|+|||++-.+||+-+..|+.++..+. ...+--|||+||+|+.+ +.++....+.
T Consensus 62 dtagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~ya----n~kvlkilvgnk~d~~drrevp~qigee 137 (213)
T KOG0095|consen 62 DTAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYA----NNKVLKILVGNKIDLADRREVPQQIGEE 137 (213)
T ss_pred eccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHh----hcceEEEeeccccchhhhhhhhHHHHHH
Confidence 899999999999999999999999999999999999999999996544 35677799999999988 6788888888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
+..... ..|+++||+...+++.+|..+...+....
T Consensus 138 fs~~qd-myfletsakea~nve~lf~~~a~rli~~a 172 (213)
T KOG0095|consen 138 FSEAQD-MYFLETSAKEADNVEKLFLDLACRLISEA 172 (213)
T ss_pred HHHhhh-hhhhhhcccchhhHHHHHHHHHHHHHHHH
Confidence 888866 44899999999999999999987776543
No 68
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.87 E-value=4.3e-21 Score=127.64 Aligned_cols=106 Identities=34% Similarity=0.618 Sum_probs=93.9
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..+++.++++++++++|||++++.|+..+..|+..+.... ..++|+++|+||+|+.. +.+..++...
T Consensus 58 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~pi~vv~nK~Dl~~~~~~~~~~~~~ 133 (165)
T cd01868 58 DTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHA----DSNIVIMLVGNKSDLRHLRAVPTEEAKA 133 (165)
T ss_pred eCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC----CCCCeEEEEEECccccccccCCHHHHHH
Confidence 899999999999999999999999999999999999999999886433 23689999999999876 6667778888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
++...+ .+++++||++|.|+.++|++++..+
T Consensus 134 ~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 134 FAEKNG-LSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred HHHHcC-CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 888777 5699999999999999999998765
No 69
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.87 E-value=4.9e-21 Score=128.03 Aligned_cols=108 Identities=33% Similarity=0.578 Sum_probs=96.0
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++++|||++++.|+..+..|+..+... ..+++|+++|+||.|+.. +.+..++...
T Consensus 59 Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~pvivv~nK~Dl~~~~~~~~~~~~~ 134 (168)
T cd01866 59 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQH----SNSNMTIMLIGNKCDLESRREVSYEEGEA 134 (168)
T ss_pred ECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHh----CCCCCcEEEEEECcccccccCCCHHHHHH
Confidence 89999999999999999999999999999999999999999988532 236799999999999975 5677888888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
++...+ .+++++||+++.|++++|..+.+.+++
T Consensus 135 ~~~~~~-~~~~e~Sa~~~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 135 FAKEHG-LIFMETSAKTASNVEEAFINTAKEIYE 167 (168)
T ss_pred HHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 888887 569999999999999999999988764
No 70
>PLN03118 Rab family protein; Provisional
Probab=99.87 E-value=1.4e-20 Score=130.29 Aligned_cols=111 Identities=32% Similarity=0.463 Sum_probs=94.4
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHH-HHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLK-WKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIE 78 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~ 78 (142)
||||+++|..++..+++++|++|+|||++++.||..+.. |...+.... ...+.|+++|+||+|+.. +.+..+...
T Consensus 68 Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~---~~~~~~~ilv~NK~Dl~~~~~i~~~~~~ 144 (211)
T PLN03118 68 DTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYS---TNQDCVKMLVGNKVDRESERDVSREEGM 144 (211)
T ss_pred ECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECccccccCccCHHHHH
Confidence 899999999999999999999999999999999999875 655554221 235689999999999865 556677777
Q ss_pred HHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 79 CFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 79 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
.++..++ .+++++||+++.|++++|..|...+.+..
T Consensus 145 ~~~~~~~-~~~~e~SAk~~~~v~~l~~~l~~~~~~~~ 180 (211)
T PLN03118 145 ALAKEHG-CLFLECSAKTRENVEQCFEELALKIMEVP 180 (211)
T ss_pred HHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence 8888887 46999999999999999999999998754
No 71
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.87 E-value=4.9e-21 Score=127.65 Aligned_cols=108 Identities=28% Similarity=0.368 Sum_probs=92.3
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++++|||++++.|+..+..|+..+.... .....++|+++|+||+|+.. +.+.......
T Consensus 55 Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~ 133 (165)
T cd04140 55 DTTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIK-GNNIEKIPIMLVGNKCDESHKREVSSNEGAA 133 (165)
T ss_pred ECCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-cCCCCCCCEEEEEECccccccCeecHHHHHH
Confidence 899999999999999999999999999999999999999988775432 11235799999999999976 5666777777
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDV 110 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 110 (142)
++..++ .++++|||++|.|++++|++|+..
T Consensus 134 ~~~~~~-~~~~e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 134 CATEWN-CAFMETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred HHHHhC-CcEEEeecCCCCCHHHHHHHHHhc
Confidence 888777 469999999999999999998754
No 72
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.86 E-value=7.4e-21 Score=127.10 Aligned_cols=109 Identities=26% Similarity=0.394 Sum_probs=95.6
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..+++.++++++++++|||++++.+++....|...+.+.. ...++|+++++||.|+.. +.+..+....
T Consensus 55 Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~---~~~~~piiiv~nK~D~~~~~~~~~~~~~~ 131 (168)
T cd04177 55 DTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIK---DSDNVPMVLVGNKADLEDDRQVSREDGVS 131 (168)
T ss_pred eCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhh---CCCCCCEEEEEEChhccccCccCHHHHHH
Confidence 899999999999999999999999999999999999999988886422 346899999999999875 5566677777
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
+++.++..+++++||+++.|++++|.+++.+++
T Consensus 132 ~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~~~~ 164 (168)
T cd04177 132 LSQQWGNVPFYETSARKRTNVDEVFIDLVRQII 164 (168)
T ss_pred HHHHcCCceEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 888887667999999999999999999998764
No 73
>KOG0393|consensus
Probab=99.86 E-value=1.2e-21 Score=132.29 Aligned_cols=110 Identities=22% Similarity=0.369 Sum_probs=101.6
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHH-HHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC----------
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKN-TLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---------- 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---------- 69 (142)
||||||.|.++++..|.++|+++++|++.++.||.. ...|+.++.+++ +++|+||||+|.|+..
T Consensus 59 DTAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~c-----p~vpiiLVGtk~DLr~d~~~~~~l~~ 133 (198)
T KOG0393|consen 59 DTAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHC-----PNVPIILVGTKADLRDDPSTLEKLQR 133 (198)
T ss_pred ecCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhC-----CCCCEEEEeehHHhhhCHHHHHHHHh
Confidence 899999999999999999999999999999999998 459999999888 9999999999999963
Q ss_pred ---CCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 70 ---RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 70 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
..++.+++..++++.|...|++|||++..|+.++|+..+..++...
T Consensus 134 ~~~~~Vt~~~g~~lA~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~~~ 182 (198)
T KOG0393|consen 134 QGLEPVTYEQGLELAKEIGAVKYLECSALTQKGVKEVFDEAIRAALRPP 182 (198)
T ss_pred ccCCcccHHHHHHHHHHhCcceeeeehhhhhCCcHHHHHHHHHHHhccc
Confidence 2578889999999999888999999999999999999999998764
No 74
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.86 E-value=9.8e-21 Score=125.74 Aligned_cols=105 Identities=24% Similarity=0.445 Sum_probs=91.3
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..+++.+++++|++++|||++++.|+..+..|+..+.... .++|+++|+||+|+.+ ..+.......
T Consensus 58 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 132 (164)
T cd04101 58 DSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS-----KHMPGVLVGNKMDLADKAEVTDAQAQA 132 (164)
T ss_pred ECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECcccccccCCCHHHHHH
Confidence 899999999999999999999999999999999999999998886432 5699999999999865 4556666666
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
+....+ .+++++||+++.|++++|..+++.+
T Consensus 133 ~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 133 FAQANQ-LKFFKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred HHHHcC-CeEEEEeCCCCCChHHHHHHHHHHh
Confidence 777767 5699999999999999999998865
No 75
>KOG0395|consensus
Probab=99.86 E-value=1.8e-20 Score=128.22 Aligned_cols=110 Identities=25% Similarity=0.463 Sum_probs=101.2
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||+|++.|..+...|++++|++++||++++..||+.+..++..+. +......+|+++||||+|+.. +.+..+++..
T Consensus 57 Dt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~---r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~ 133 (196)
T KOG0395|consen 57 DTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQIL---RVKGRDDVPIILVGNKCDLERERQVSEEEGKA 133 (196)
T ss_pred cCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHH---HhhCcCCCCEEEEEEcccchhccccCHHHHHH
Confidence 899999999999999999999999999999999999999998885 333556799999999999987 8999999999
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
++..+++ +|+++||+.+.+++++|..|++.+-..
T Consensus 134 la~~~~~-~f~E~Sak~~~~v~~~F~~L~r~~~~~ 167 (196)
T KOG0395|consen 134 LARSWGC-AFIETSAKLNYNVDEVFYELVREIRLP 167 (196)
T ss_pred HHHhcCC-cEEEeeccCCcCHHHHHHHHHHHHHhh
Confidence 9999995 599999999999999999999998873
No 76
>PLN03108 Rab family protein; Provisional
Probab=99.86 E-value=2.5e-20 Score=128.99 Aligned_cols=110 Identities=32% Similarity=0.565 Sum_probs=97.8
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++++|||++++.||..+..|+..+... .....|+++|+||+|+.. +.+..+++..
T Consensus 61 Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~----~~~~~piiiv~nK~Dl~~~~~~~~~~~~~ 136 (210)
T PLN03108 61 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQH----ANANMTIMLIGNKCDLAHRRAVSTEEGEQ 136 (210)
T ss_pred eCCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHh----cCCCCcEEEEEECccCccccCCCHHHHHH
Confidence 89999999999999999999999999999999999999998877532 235799999999999976 5677888899
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
+++.++ .+++++||+++.|++++|.+++..++++.
T Consensus 137 ~~~~~~-~~~~e~Sa~~~~~v~e~f~~l~~~~~~~~ 171 (210)
T PLN03108 137 FAKEHG-LIFMEASAKTAQNVEEAFIKTAAKIYKKI 171 (210)
T ss_pred HHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 999888 56999999999999999999999998754
No 77
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.86 E-value=1.1e-20 Score=125.13 Aligned_cols=105 Identities=32% Similarity=0.506 Sum_probs=94.1
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++++|||++++.++..+..|+..+... ..+++|+++|+||+|+.. +.+..++...
T Consensus 55 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~iivv~nK~D~~~~~~~~~~~~~~ 130 (161)
T cd04113 55 DTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARAL----ASPNIVVILVGNKSDLADQREVTFLEASR 130 (161)
T ss_pred ECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEEchhcchhccCCHHHHHH
Confidence 89999999999999999999999999999999999999999887432 236899999999999976 5677888888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDV 110 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 110 (142)
++...+ .+++++||+++.|+.++|.++++.
T Consensus 131 ~~~~~~-~~~~~~Sa~~~~~i~~~~~~~~~~ 160 (161)
T cd04113 131 FAQENG-LLFLETSALTGENVEEAFLKCARS 160 (161)
T ss_pred HHHHcC-CEEEEEECCCCCCHHHHHHHHHHh
Confidence 999988 679999999999999999999875
No 78
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.86 E-value=7.3e-21 Score=126.32 Aligned_cols=102 Identities=18% Similarity=0.216 Sum_probs=86.0
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC---CCCCHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---RQVDINDI 77 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---~~~~~~~~ 77 (142)
||+|++. ..+++++|++++|||++++.||+.+..|+..+.... ...++|+++|+||.|+.. +.+..+++
T Consensus 53 D~~g~~~-----~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~---~~~~~piilvgnK~Dl~~~~~~~v~~~~~ 124 (158)
T cd04103 53 DEGGAPD-----AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYR---NISEIPLILVGTQDAISESNPRVIDDARA 124 (158)
T ss_pred ECCCCCc-----hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEeeHHHhhhcCCcccCHHHH
Confidence 7999985 347789999999999999999999999999986432 335789999999999842 56788888
Q ss_pred HHHHHHcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891 78 ECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDV 110 (142)
Q Consensus 78 ~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 110 (142)
..+++..+..+|++|||+++.||+++|..+++.
T Consensus 125 ~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~ 157 (158)
T cd04103 125 RQLCADMKRCSYYETCATYGLNVERVFQEAAQK 157 (158)
T ss_pred HHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence 888887654569999999999999999998754
No 79
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.86 E-value=2e-20 Score=125.32 Aligned_cols=107 Identities=32% Similarity=0.508 Sum_probs=93.4
Q ss_pred CCCcchhhh-hhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHH
Q psy10891 1 MTEGQERFT-WMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIE 78 (142)
Q Consensus 1 Dt~G~e~~~-~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~ 78 (142)
||||+++|. .+++.+++++|++++|||++++.|+..+..|+..+.... ...++|+++|+||+|+.. +.+......
T Consensus 57 Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~iiv~nK~Dl~~~~~~~~~~~~ 133 (170)
T cd04115 57 DTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHS---LPNEVPRILVGNKCDLREQIQVPTDLAQ 133 (170)
T ss_pred eCCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhc---CCCCCCEEEEEECccchhhcCCCHHHHH
Confidence 899999997 578999999999999999999999999999998886432 346799999999999876 667778888
Q ss_pred HHHHHcCCceEEEeeccC---CCCHHHHHHHHHHHH
Q psy10891 79 CFYKEHNFIGWTETSTKE---GLMVNDSMKFLLDVL 111 (142)
Q Consensus 79 ~~~~~~~~~~~~~~Sa~~---~~~i~~l~~~l~~~~ 111 (142)
.++...+ .+++++||++ +.+++++|..++..+
T Consensus 134 ~~~~~~~-~~~~e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 134 RFADAHS-MPLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred HHHHHcC-CcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence 8888887 6699999999 889999999998765
No 80
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.86 E-value=1.2e-20 Score=126.71 Aligned_cols=104 Identities=19% Similarity=0.337 Sum_probs=90.1
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC----------
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---------- 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---------- 69 (142)
||||+++|..+++.+++++|++++|||++++.||+.+. .|+..+.... +++|+++|+||+|+..
T Consensus 54 Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~ 128 (173)
T cd04130 54 DTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN-----PKAPIILVGTQADLRTDVNVLIQLAR 128 (173)
T ss_pred ECCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC-----CCCCEEEEeeChhhccChhHHHHHhh
Confidence 89999999999999999999999999999999999874 6888875322 5799999999999852
Q ss_pred ---CCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHH
Q psy10891 70 ---RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLD 109 (142)
Q Consensus 70 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 109 (142)
+.+..++...+++..+..++++|||++|.|++++|+.++-
T Consensus 129 ~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 129 YGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred cCCCCcCHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHh
Confidence 3467778888999888657999999999999999988764
No 81
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.85 E-value=5.7e-20 Score=122.75 Aligned_cols=114 Identities=30% Similarity=0.532 Sum_probs=98.3
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||++.|..++..+++++|++|+|||++++.++.....|...+..........++|+++|+||+|+.. .....+....
T Consensus 55 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 134 (172)
T cd01862 55 DTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQ 134 (172)
T ss_pred eCCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHH
Confidence 899999999999999999999999999999999999888988765443222334799999999999974 5566778888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
+++..+..+++++|+++|.|++++|.++...+++.
T Consensus 135 ~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 135 WCQSNGNIPYFETSAKEAINVEQAFETIARKALEQ 169 (172)
T ss_pred HHHHcCCceEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 88888867799999999999999999999988875
No 82
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.85 E-value=3.4e-20 Score=122.89 Aligned_cols=108 Identities=35% Similarity=0.589 Sum_probs=95.8
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++++|||++++.+++.+..|+..+..+. .+++|+++|+||+|+.. ..+..+....
T Consensus 55 D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~----~~~~pivvv~nK~D~~~~~~~~~~~~~~ 130 (164)
T smart00175 55 DTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYA----DPNVVIMLVGNKSDLEDQRQVSREEAEA 130 (164)
T ss_pred ECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC----CCCCeEEEEEEchhcccccCCCHHHHHH
Confidence 899999999999999999999999999999999999999998885332 25899999999999876 5567788888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
++..++ .+++++|++++.|++++|..+...+.+
T Consensus 131 ~~~~~~-~~~~e~Sa~~~~~i~~l~~~i~~~~~~ 163 (164)
T smart00175 131 FAEEHG-LPFFETSAKTNTNVEEAFEELAREILK 163 (164)
T ss_pred HHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 888888 569999999999999999999998764
No 83
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.85 E-value=3e-20 Score=125.90 Aligned_cols=110 Identities=16% Similarity=0.244 Sum_probs=84.4
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
|||||++|..+|..|++++|++|+|||++++.++.....|+..+. ......++|++||+||.|+... ...+++...
T Consensus 67 D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l---~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~ 142 (181)
T PLN00223 67 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRML---NEDELRDAVLLVFANKQDLPNA-MNAAEITDK 142 (181)
T ss_pred ECCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHh---cCHhhCCCCEEEEEECCCCCCC-CCHHHHHHH
Confidence 899999999999999999999999999999999988877776654 2212357999999999998652 333443332
Q ss_pred HHHcCC----ceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 81 YKEHNF----IGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 81 ~~~~~~----~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
+..... ..++++||++|+|+.++|++|...+.++
T Consensus 143 l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 143 LGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 180 (181)
T ss_pred hCccccCCCceEEEeccCCCCCCHHHHHHHHHHHHhhc
Confidence 221110 1255799999999999999999887654
No 84
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.85 E-value=2.2e-20 Score=125.07 Aligned_cols=105 Identities=16% Similarity=0.192 Sum_probs=84.2
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|..+++.+++++|++|+|||++++.++.....|+..+.. .....++|++||+||+|+.. .+..+++..+
T Consensus 59 Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~---~~~~~~~piilv~NK~Dl~~-~~~~~~i~~~ 134 (168)
T cd04149 59 DVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIIN---DREMRDALLLVFANKQDLPD-AMKPHEIQEK 134 (168)
T ss_pred ECCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhc---CHhhcCCcEEEEEECcCCcc-CCCHHHHHHH
Confidence 8999999999999999999999999999999999988888766642 11235789999999999864 3456666665
Q ss_pred HHHcC----CceEEEeeccCCCCHHHHHHHHHH
Q psy10891 81 YKEHN----FIGWTETSTKEGLMVNDSMKFLLD 109 (142)
Q Consensus 81 ~~~~~----~~~~~~~Sa~~~~~i~~l~~~l~~ 109 (142)
+.... ..+++++||++|.|+.++|++|..
T Consensus 135 ~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 135 LGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167 (168)
T ss_pred cCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence 43211 135889999999999999999864
No 85
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.84 E-value=2.9e-20 Score=124.67 Aligned_cols=106 Identities=20% Similarity=0.303 Sum_probs=92.5
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC----------
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---------- 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---------- 69 (142)
||||+++|..++..+++++|++++|||++++.||+.+. .|+..+... .+++|+++|+||+|+.+
T Consensus 54 Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-----~~~~piivv~nK~Dl~~~~~~~~~~~~ 128 (174)
T cd04135 54 DTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-----APNVPYLLVGTQIDLRDDPKTLARLND 128 (174)
T ss_pred eCCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-----CCCCCEEEEeEchhhhcChhhHHHHhh
Confidence 89999999999999999999999999999999999875 688777532 36899999999999854
Q ss_pred ---CCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 70 ---RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 70 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
+.+..+++..+++..+..++++|||++|.|++++|..++..+
T Consensus 129 ~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 129 MKEKPVTVEQGQKLAKEIGAHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred ccCCCCCHHHHHHHHHHcCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 146677888889988876799999999999999999998876
No 86
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.84 E-value=7.2e-20 Score=121.21 Aligned_cols=106 Identities=32% Similarity=0.505 Sum_probs=94.1
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|..++..+++++|++++|||++++.|+..+..|+..+.++. ...++|+++|+||+|+.......+....+
T Consensus 55 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~~~~iv~nK~D~~~~~~~~~~~~~~ 131 (161)
T cd01863 55 DTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYS---TNNDIVKMLVGNKIDKENREVTREEGLKF 131 (161)
T ss_pred ECCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhC---CCCCCcEEEEEECCcccccccCHHHHHHH
Confidence 899999999999999999999999999999999999999999887443 45689999999999997656677788888
Q ss_pred HHHcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891 81 YKEHNFIGWTETSTKEGLMVNDSMKFLLDV 110 (142)
Q Consensus 81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 110 (142)
+...+ .+++++||++|.|+++++..+...
T Consensus 132 ~~~~~-~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 132 ARKHN-MLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred HHHcC-CEEEEEecCCCCCHHHHHHHHHHh
Confidence 88887 569999999999999999998765
No 87
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.84 E-value=4e-20 Score=123.79 Aligned_cols=111 Identities=11% Similarity=0.208 Sum_probs=90.9
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|..++..+++++|++++|||++++.++.....|+..+.+ .....+.|+++|+||+|+.. .+..+++..+
T Consensus 49 Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~---~~~~~~~piilv~NK~Dl~~-~~~~~~~~~~ 124 (169)
T cd04158 49 DVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLT---EKELRDALLLIFANKQDVAG-ALSVEEMTEL 124 (169)
T ss_pred ECCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhc---ChhhCCCCEEEEEeCcCccc-CCCHHHHHHH
Confidence 8999999999999999999999999999999999999999888752 22234689999999999864 4566666666
Q ss_pred HHHcCC-----ceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 81 YKEHNF-----IGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 81 ~~~~~~-----~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
+...+. ..+++|||++|.|+.++|.+|.+.+....
T Consensus 125 ~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~~~~ 164 (169)
T cd04158 125 LSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLVAAG 164 (169)
T ss_pred hCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHhhcc
Confidence 543221 24778999999999999999998887653
No 88
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.84 E-value=9.2e-20 Score=128.97 Aligned_cols=114 Identities=20% Similarity=0.316 Sum_probs=94.4
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcc-----cCCCCCCCEEEEEeCCCCCC-CCCCH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCT-----LSDGSPIPCMLLANKCDLPH-RQVDI 74 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~~~~~p~ilv~nK~D~~~-~~~~~ 74 (142)
||+|++.|..++..++.++|++|+|||++++.||+.+..|+..+..... .....++|+|+|+||+|+.. +.+..
T Consensus 54 Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~ 133 (247)
T cd04143 54 DTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQR 133 (247)
T ss_pred ECCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCH
Confidence 8999999999999999999999999999999999999999888863210 01235799999999999975 56777
Q ss_pred HHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 75 NDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
+++..++......+++++||+++.|++++|.+|+..+...
T Consensus 134 ~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~~~p 173 (247)
T cd04143 134 DEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLAKLP 173 (247)
T ss_pred HHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHhccc
Confidence 8877777654335699999999999999999999876433
No 89
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.84 E-value=1.1e-19 Score=120.44 Aligned_cols=106 Identities=31% Similarity=0.522 Sum_probs=94.2
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++++|+|++++.++.....|+..+... ....+|+++++||+|+.. +....+....
T Consensus 56 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~iivv~nK~D~~~~~~~~~~~~~~ 131 (163)
T cd01860 56 DTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRN----ASPNIIIALVGNKADLESKRQVSTEEAQE 131 (163)
T ss_pred eCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEECccccccCcCCHHHHHH
Confidence 89999999999999999999999999999999999999999988532 236799999999999874 5667778888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
++...+ .+++++||++|.|+.++|.+|++.+
T Consensus 132 ~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 132 YADENG-LLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred HHHHcC-CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 888888 5699999999999999999999875
No 90
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.84 E-value=7.4e-20 Score=121.80 Aligned_cols=109 Identities=26% Similarity=0.283 Sum_probs=91.3
Q ss_pred CCCcchhh-hhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHH
Q psy10891 1 MTEGQERF-TWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIE 78 (142)
Q Consensus 1 Dt~G~e~~-~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~ 78 (142)
||||++++ ...+..+++++|++|+|||++++.||+.+..|+..+.... ....++|+++|+||+|+.. +.+..+...
T Consensus 53 D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~piilv~nK~Dl~~~~~v~~~~~~ 130 (165)
T cd04146 53 DTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIK--KRDREIPVILVGNKADLLHYRQVSTEEGE 130 (165)
T ss_pred ECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--cCCCCCCEEEEEECCchHHhCccCHHHHH
Confidence 89999963 4567788999999999999999999999999988876322 0135799999999999865 567778888
Q ss_pred HHHHHcCCceEEEeeccCCC-CHHHHHHHHHHHHH
Q psy10891 79 CFYKEHNFIGWTETSTKEGL-MVNDSMKFLLDVLM 112 (142)
Q Consensus 79 ~~~~~~~~~~~~~~Sa~~~~-~i~~l~~~l~~~~~ 112 (142)
.+++.++ .+++++||+++. |++++|..++..+.
T Consensus 131 ~~~~~~~-~~~~e~Sa~~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 131 KLASELG-CLFFEVSAAEDYDGVHSVFHELCREVR 164 (165)
T ss_pred HHHHHcC-CEEEEeCCCCCchhHHHHHHHHHHHHh
Confidence 8888888 579999999995 99999999998764
No 91
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.84 E-value=9.7e-20 Score=120.52 Aligned_cols=105 Identities=36% Similarity=0.509 Sum_probs=92.0
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++++|||++++.||..+..|+..+... ...+.|+++|+||+|+.. +.+..+....
T Consensus 55 D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~iilv~nK~D~~~~~~~~~~~~~~ 130 (161)
T cd01861 55 DTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDE----RGNDVIIVLVGNKTDLSDKRQVSTEEGEK 130 (161)
T ss_pred ECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh----CCCCCEEEEEEEChhccccCccCHHHHHH
Confidence 89999999999999999999999999999999999999999988532 223699999999999954 5567777788
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDV 110 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 110 (142)
+++..+ .+++++||+++.|++++|.++...
T Consensus 131 ~~~~~~-~~~~~~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 131 KAKELN-AMFIETSAKAGHNVKELFRKIASA 160 (161)
T ss_pred HHHHhC-CEEEEEeCCCCCCHHHHHHHHHHh
Confidence 888877 569999999999999999999864
No 92
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.83 E-value=1.7e-19 Score=119.10 Aligned_cols=106 Identities=32% Similarity=0.529 Sum_probs=92.8
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||++.|..+++.++.++|++++|||++++.++..+..|+..+.... ..++|+++|+||+|+.. +.+..+.+..
T Consensus 55 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~piiiv~nK~D~~~~~~~~~~~~~~ 130 (162)
T cd04123 55 DTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMR----GNNISLVIVGNKIDLERQRVVSKSEAEE 130 (162)
T ss_pred ECCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC----CCCCeEEEEEECcccccccCCCHHHHHH
Confidence 899999999999999999999999999999999999999998886432 23799999999999875 5566777777
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
++...+ .+++++|++++.|++++|.++...+
T Consensus 131 ~~~~~~-~~~~~~s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 131 YAKSVG-AKHFETSAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred HHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 888777 5599999999999999999998765
No 93
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.83 E-value=2.8e-19 Score=118.39 Aligned_cols=108 Identities=26% Similarity=0.453 Sum_probs=94.7
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++.++++++|+|++++.++.....|+..+.+.. ...++|+++|+||+|+.. +.........
T Consensus 54 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piiiv~NK~D~~~~~~~~~~~~~~ 130 (164)
T cd04139 54 DTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVK---DDDNVPLLLVGNKCDLEDKRQVSSEEAAN 130 (164)
T ss_pred ECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEEccccccccccCHHHHHH
Confidence 899999999999999999999999999999999999999988887432 345799999999999976 4566777777
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
++..++ .+++++||+++.|+.++|..+..++.
T Consensus 131 ~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 131 LARQWG-VPYVETSAKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred HHHHhC-CeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 888877 57999999999999999999998775
No 94
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.83 E-value=8e-20 Score=122.47 Aligned_cols=106 Identities=18% Similarity=0.142 Sum_probs=89.1
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||+|+++|..++..+++++|++++|||++++.+++.+..|+..+. ...++|+++|+||+|+.+ +.+.......
T Consensus 60 d~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~------~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~ 133 (169)
T cd01892 60 EVGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYF------MLGEIPCLFVAAKADLDEQQQRYEVQPDE 133 (169)
T ss_pred ecCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhc------cCCCCeEEEEEEcccccccccccccCHHH
Confidence 789999999999999999999999999999999999888987663 124799999999999864 3333344566
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
+++.+++.+++++||+++.|++++|..++..+.
T Consensus 134 ~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 134 FCRKLGLPPPLHFSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred HHHHcCCCCCEEEEeccCccHHHHHHHHHHHhh
Confidence 777777545799999999999999999998875
No 95
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.83 E-value=9.7e-20 Score=120.90 Aligned_cols=104 Identities=16% Similarity=0.231 Sum_probs=79.8
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|..++..|++++|++++|||++++.++.....|+..+.. .......|++|++||+|+... ....++...
T Consensus 50 D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~---~~~~~~~piilv~NK~Dl~~~-~~~~~i~~~ 125 (159)
T cd04150 50 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLN---EDELRDAVLLVFANKQDLPNA-MSAAEVTDK 125 (159)
T ss_pred ECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHh---cHHhcCCCEEEEEECCCCCCC-CCHHHHHHH
Confidence 8999999999999999999999999999999999988887776642 112246899999999998642 223332222
Q ss_pred HH-----HcCCceEEEeeccCCCCHHHHHHHHHH
Q psy10891 81 YK-----EHNFIGWTETSTKEGLMVNDSMKFLLD 109 (142)
Q Consensus 81 ~~-----~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 109 (142)
.. ..+ ..++++||++|.|++++|++|..
T Consensus 126 ~~~~~~~~~~-~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 126 LGLHSLRNRN-WYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred hCccccCCCC-EEEEEeeCCCCCCHHHHHHHHhc
Confidence 21 112 24678999999999999999863
No 96
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.83 E-value=2.1e-19 Score=122.24 Aligned_cols=110 Identities=27% Similarity=0.370 Sum_probs=94.2
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC----------
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---------- 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---------- 69 (142)
||+|++.|..+.+.++.++|++++|||++++.+|..+. .|+..+.... +++|+++|+||+|+..
T Consensus 55 Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~-----~~~piilvgnK~Dl~~~~~~~~~~~~ 129 (187)
T cd04129 55 DTAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYC-----PNVPVILVGLKKDLRQDAVAKEEYRT 129 (187)
T ss_pred ECCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEeeChhhhhCccccccccc
Confidence 89999999988888899999999999999999999986 6988886433 5799999999999843
Q ss_pred -CCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 70 -RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 70 -~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
+.+..+....+++.++..++++|||++|.|++++|..+.+.++...
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~ 176 (187)
T cd04129 130 QRFVPIQQGKRVAKEIGAKKYMECSALTGEGVDDVFEAATRAALLVR 176 (187)
T ss_pred CCcCCHHHHHHHHHHhCCcEEEEccCCCCCCHHHHHHHHHHHHhccc
Confidence 2345667788889888767999999999999999999998887654
No 97
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.82 E-value=2.3e-19 Score=123.15 Aligned_cols=113 Identities=15% Similarity=0.172 Sum_probs=88.7
Q ss_pred CCCcchhhhh--------hhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CC
Q psy10891 1 MTEGQERFTW--------MTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQ 71 (142)
Q Consensus 1 Dt~G~e~~~~--------~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~ 71 (142)
||||++.|.. ....+++++|++|+|||++++.||+.+..|+..+..... ....++|+++|+||+|+.. +.
T Consensus 55 Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~-~~~~~~piiivgNK~Dl~~~~~ 133 (198)
T cd04142 55 DVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRP-AGNKEPPIVVVGNKRDQQRHRF 133 (198)
T ss_pred eCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcc-cCCCCCCEEEEEECcccccccc
Confidence 7888765432 233457899999999999999999999999888764320 1236799999999999966 55
Q ss_pred CCHHHHHHHHH-HcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 72 VDINDIECFYK-EHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 72 ~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
+..+.+..++. .++ .+|++|||++|.|++++|..++..++.+.
T Consensus 134 ~~~~~~~~~~~~~~~-~~~~e~Sak~g~~v~~lf~~i~~~~~~~~ 177 (198)
T cd04142 134 APRHVLSVLVRKSWK-CGYLECSAKYNWHILLLFKELLISATTRG 177 (198)
T ss_pred ccHHHHHHHHHHhcC-CcEEEecCCCCCCHHHHHHHHHHHhhccC
Confidence 66666776665 445 67999999999999999999999888664
No 98
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.82 E-value=3.3e-19 Score=120.90 Aligned_cols=111 Identities=15% Similarity=0.281 Sum_probs=88.6
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|..+|+.+++++|++++|+|++++.++.....|+..+.... ...++|+++|+||+|+.. ....+.+..+
T Consensus 58 Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~---~~~~~p~iiv~NK~D~~~-~~~~~~~~~~ 133 (183)
T cd04152 58 DVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFS---ENQGVPVLVLANKQDLPN-ALSVSEVEKL 133 (183)
T ss_pred ECCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhh---hcCCCcEEEEEECcCccc-cCCHHHHHHH
Confidence 899999999999999999999999999999999998888887775322 335799999999999864 3344555544
Q ss_pred HHH--c---CCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 81 YKE--H---NFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 81 ~~~--~---~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
... . ...+++++||+++.|++++|.+|+..+.+..
T Consensus 134 ~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~~~~ 173 (183)
T cd04152 134 LALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMILKRR 173 (183)
T ss_pred hCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHHHHH
Confidence 321 1 1135789999999999999999999987543
No 99
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.82 E-value=3.1e-19 Score=119.71 Aligned_cols=106 Identities=24% Similarity=0.390 Sum_probs=89.4
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC---------
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR--------- 70 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--------- 70 (142)
||||+++|..++..++.++|++++|||++++.||+.+. .|+..+.... .++|+++|+||+|+...
T Consensus 55 Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~i~~ 129 (175)
T cd01870 55 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNKKDLRNDEHTRRELAK 129 (175)
T ss_pred eCCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-----CCCCEEEEeeChhcccChhhhhhhhh
Confidence 89999999999999999999999999999999998875 5888775332 57999999999998531
Q ss_pred ----CCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 71 ----QVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 71 ----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
.+.......++...+..++++|||++|.|++++|.++++.+
T Consensus 130 ~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 130 MKQEPVKPEEGRDMANKIGAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred ccCCCccHHHHHHHHHHcCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 23456677778887766799999999999999999998764
No 100
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.82 E-value=2.8e-19 Score=120.45 Aligned_cols=107 Identities=19% Similarity=0.226 Sum_probs=82.6
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|..++..|++++|++|+|||++++.++.....|+..+.. .....++|++||+||+|+.. ....+++...
T Consensus 63 D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~---~~~~~~~piilv~NK~Dl~~-~~~~~~i~~~ 138 (175)
T smart00177 63 DVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLN---EDELRDAVILVFANKQDLPD-AMKAAEITEK 138 (175)
T ss_pred ECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhh---CHhhcCCcEEEEEeCcCccc-CCCHHHHHHH
Confidence 8999999999999999999999999999999999998888877642 22235789999999999864 2233333332
Q ss_pred HHHc----CCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 81 YKEH----NFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 81 ~~~~----~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
.... ....++++||++|.|+.++|.+|...+
T Consensus 139 ~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 139 LGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred hCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 2111 112366899999999999999998765
No 101
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.82 E-value=4.5e-19 Score=123.64 Aligned_cols=109 Identities=17% Similarity=0.264 Sum_probs=91.1
Q ss_pred CCCcchhhhhhhHhhhc-cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYK-DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIE 78 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~-~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~ 78 (142)
||||++. .+...++. ++|++++|||++++.||..+..|+..+.... ...++|+|+|+||+|+.. +.+..++..
T Consensus 56 Dt~G~~~--~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~---~~~~~piilV~NK~Dl~~~~~v~~~~~~ 130 (221)
T cd04148 56 DHWEQEM--WTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNR---QLEDRPIILVGNKSDLARSREVSVQEGR 130 (221)
T ss_pred eCCCcch--HHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEEChhccccceecHHHHH
Confidence 8999993 34556667 9999999999999999999999998886322 335799999999999865 566777777
Q ss_pred HHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 79 CFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 79 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
.++..++ .+++++||+++.|++++|.+++..+....
T Consensus 131 ~~a~~~~-~~~~e~SA~~~~gv~~l~~~l~~~~~~~~ 166 (221)
T cd04148 131 ACAVVFD-CKFIETSAGLQHNVDELLEGIVRQIRLRR 166 (221)
T ss_pred HHHHHcC-CeEEEecCCCCCCHHHHHHHHHHHHHhhh
Confidence 8888887 46999999999999999999999997544
No 102
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.82 E-value=5e-19 Score=120.00 Aligned_cols=110 Identities=15% Similarity=0.214 Sum_probs=83.5
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|..++..|++++|++|+|||++++.++.....|+..+. ......++|++||+||.|+.. .....++...
T Consensus 67 D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~---~~~~~~~~piilv~NK~Dl~~-~~~~~~i~~~ 142 (182)
T PTZ00133 67 DVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERML---SEDELRDAVLLVFANKQDLPN-AMSTTEVTEK 142 (182)
T ss_pred ECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHH---hCHhhcCCCEEEEEeCCCCCC-CCCHHHHHHH
Confidence 899999999999999999999999999999999998887776664 211224689999999999854 2233333222
Q ss_pred HHHcC----CceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 81 YKEHN----FIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 81 ~~~~~----~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
..... ...++++||++|.|+.++|++|.+.+.+.
T Consensus 143 l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 143 LGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred hCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHHHHHh
Confidence 11111 12466899999999999999999877654
No 103
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.81 E-value=6.6e-19 Score=117.45 Aligned_cols=106 Identities=31% Similarity=0.471 Sum_probs=90.7
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||++.|..++..++..+|++++|||++++.++..+..|+..+... ...++|+++|+||+|+.. +.+..+....
T Consensus 62 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~----~~~~~~~i~v~NK~D~~~~~~i~~~~~~~ 137 (169)
T cd04114 62 DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQY----ANNKVITILVGNKIDLAERREVSQQRAEE 137 (169)
T ss_pred ECCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh----CCCCCeEEEEEECcccccccccCHHHHHH
Confidence 89999999999999999999999999999999999999999887532 234799999999999875 5566666666
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
+..... .+++++||++|.|+.++|..|...+
T Consensus 138 ~~~~~~-~~~~~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 138 FSDAQD-MYYLETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred HHHHcC-CeEEEeeCCCCCCHHHHHHHHHHHh
Confidence 766666 5699999999999999999998765
No 104
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.81 E-value=5.5e-19 Score=118.60 Aligned_cols=105 Identities=18% Similarity=0.199 Sum_probs=84.6
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||++.|..++..+++++|++++|||++++.++.....|+..+.. .....++|+++|+||+|+.. ....+.+..+
T Consensus 64 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~---~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~ 139 (173)
T cd04154 64 DVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQ---EERLAGATLLILANKQDLPG-ALSEEEIREA 139 (173)
T ss_pred ECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHh---ChhhcCCCEEEEEECccccc-CCCHHHHHHH
Confidence 8999999999999999999999999999999999988888877652 11235799999999999865 2344555555
Q ss_pred HHHc----CCceEEEeeccCCCCHHHHHHHHHH
Q psy10891 81 YKEH----NFIGWTETSTKEGLMVNDSMKFLLD 109 (142)
Q Consensus 81 ~~~~----~~~~~~~~Sa~~~~~i~~l~~~l~~ 109 (142)
+... ...+++++||++|.|++++|.+++.
T Consensus 140 ~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 140 LELDKISSHHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred hCccccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence 4321 2256999999999999999999864
No 105
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.81 E-value=9.2e-20 Score=121.61 Aligned_cols=102 Identities=19% Similarity=0.242 Sum_probs=82.2
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHH----
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDIND---- 76 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~---- 76 (142)
||||+++|..++..+++++|++++|||++++.++.....|+..+... .+++|+++|+||+|+... .....
T Consensus 50 Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~-----~~~~piilv~NK~Dl~~~-~~~~~i~~~ 123 (164)
T cd04162 50 EIGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQH-----PPDLPLVVLANKQDLPAA-RSVQEIHKE 123 (164)
T ss_pred ECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhC-----CCCCcEEEEEeCcCCcCC-CCHHHHHHH
Confidence 89999999999999999999999999999999999888888877522 268999999999998652 12222
Q ss_pred --HHHHHHHcCCceEEEeeccC------CCCHHHHHHHHHH
Q psy10891 77 --IECFYKEHNFIGWTETSTKE------GLMVNDSMKFLLD 109 (142)
Q Consensus 77 --~~~~~~~~~~~~~~~~Sa~~------~~~i~~l~~~l~~ 109 (142)
+..+++..+ .+++++||++ ++|++++|+.++.
T Consensus 124 ~~~~~~~~~~~-~~~~~~Sa~~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 124 LELEPIARGRR-WILQGTSLDDDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred hCChhhcCCCc-eEEEEeeecCCCChhHHHHHHHHHHHHhc
Confidence 234445555 4588888888 9999999998864
No 106
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.81 E-value=2.7e-18 Score=115.75 Aligned_cols=112 Identities=22% Similarity=0.381 Sum_probs=95.9
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..++..++++++|||+++..+++.+..|+..+.+. ....+.|+|+|+||+|+.. +.+.......
T Consensus 55 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~---~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~ 131 (180)
T cd04137 55 DTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDM---LGKESVPIVLVGNKSDLHTQRQVSTEEGKE 131 (180)
T ss_pred ECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHh---cCCCCCCEEEEEEchhhhhcCccCHHHHHH
Confidence 89999999999999999999999999999999999999998877632 2345789999999999865 4455666777
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 116 (142)
++..++ .+++++||+++.|+.++|.++...+.....
T Consensus 132 ~~~~~~-~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~ 167 (180)
T cd04137 132 LAESWG-AAFLESSARENENVEEAFELLIEEIEKVEN 167 (180)
T ss_pred HHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHHHhcC
Confidence 777777 569999999999999999999999876643
No 107
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.81 E-value=1.1e-18 Score=119.61 Aligned_cols=108 Identities=22% Similarity=0.318 Sum_probs=88.7
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC--CCCCHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH--RQVDINDIE 78 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~--~~~~~~~~~ 78 (142)
||||+++|..++..++.++|++++|||++++.+++.+..|+..+.... ...++|+|+|+||+|+.. +.+......
T Consensus 53 D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~NK~Dl~~~~~~v~~~~~~ 129 (198)
T cd04147 53 DTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVK---EDKFVPIVVVGNKADSLEEERQVPAKDAL 129 (198)
T ss_pred ECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCcEEEEEEccccccccccccHHHHH
Confidence 899999999999999999999999999999999999999988886433 335799999999999864 334444444
Q ss_pred HHHH-HcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 79 CFYK-EHNFIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 79 ~~~~-~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
.... .++ .+++++||++|.|++++|++++..+.
T Consensus 130 ~~~~~~~~-~~~~~~Sa~~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 130 STVELDWN-CGFVETSAKDNENVLEVFKELLRQAN 163 (198)
T ss_pred HHHHhhcC-CcEEEecCCCCCCHHHHHHHHHHHhh
Confidence 3333 334 46899999999999999999998775
No 108
>KOG4252|consensus
Probab=99.80 E-value=3.3e-19 Score=117.71 Aligned_cols=111 Identities=32% Similarity=0.508 Sum_probs=101.6
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||||.|..++..||++|.+.++||+.+|..||+.+..|++.+...+ ..+|.++|-||+|+.+ ..+...+.+.
T Consensus 75 dtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~-----~~IPtV~vqNKIDlveds~~~~~evE~ 149 (246)
T KOG4252|consen 75 DTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKET-----ERIPTVFVQNKIDLVEDSQMDKGEVEG 149 (246)
T ss_pred HhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHh-----ccCCeEEeeccchhhHhhhcchHHHHH
Confidence 799999999999999999999999999999999999999999997655 7999999999999988 6778888889
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhCC
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGL 117 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~ 117 (142)
+++... ..++.+|++...|+..+|..|+..+.+...+
T Consensus 150 lak~l~-~RlyRtSvked~NV~~vF~YLaeK~~q~~kq 186 (246)
T KOG4252|consen 150 LAKKLH-KRLYRTSVKEDFNVMHVFAYLAEKLTQQKKQ 186 (246)
T ss_pred HHHHhh-hhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 999887 4599999999999999999999988876544
No 109
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.80 E-value=1.3e-18 Score=116.09 Aligned_cols=108 Identities=14% Similarity=0.170 Sum_probs=86.0
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC---CHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV---DIND 76 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~ 76 (142)
||||++.+...+..++.++|++++|||++++.|++.+. .|+..+.... .++|+++|+||+|+.+... ..+.
T Consensus 53 Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-----~~~pviiv~nK~Dl~~~~~~~~~~~~ 127 (166)
T cd01893 53 DTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG-----VKVPIILVGNKSDLRDGSSQAGLEEE 127 (166)
T ss_pred eCCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEEchhcccccchhHHHHH
Confidence 89999999888888899999999999999999999875 6888775332 4799999999999976222 1233
Q ss_pred HHHHHHHcC-CceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 77 IECFYKEHN-FIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 77 ~~~~~~~~~-~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
+..++..+. ..++++|||+++.|++++|..+...++.
T Consensus 128 ~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~~~ 165 (166)
T cd01893 128 MLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAVLH 165 (166)
T ss_pred HHHHHHHHhcccEEEEeccccccCHHHHHHHHHHHhcC
Confidence 444444443 2369999999999999999999887753
No 110
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.79 E-value=3.1e-18 Score=113.33 Aligned_cols=107 Identities=17% Similarity=0.203 Sum_probs=80.9
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|..++..+++++|++++|+|++++.++.....|+..+.... .....++|+++|+||+|+... .....+...
T Consensus 51 Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~iiv~NK~Dl~~~-~~~~~~~~~ 128 (162)
T cd04157 51 DMSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHP-DIKHRRVPILFFANKMDLPDA-LTAVKITQL 128 (162)
T ss_pred ECCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCc-ccccCCCCEEEEEeCccccCC-CCHHHHHHH
Confidence 899999999999999999999999999999999988888887775211 001257999999999998642 222333222
Q ss_pred HHH---c-CCceEEEeeccCCCCHHHHHHHHHH
Q psy10891 81 YKE---H-NFIGWTETSTKEGLMVNDSMKFLLD 109 (142)
Q Consensus 81 ~~~---~-~~~~~~~~Sa~~~~~i~~l~~~l~~ 109 (142)
... . ...+++++||++|.|++++|.+|..
T Consensus 129 l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 129 LGLENIKDKPWHIFASNALTGEGLDEGVQWLQA 161 (162)
T ss_pred hCCccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence 211 1 1124889999999999999999864
No 111
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.78 E-value=4.9e-18 Score=111.89 Aligned_cols=106 Identities=30% Similarity=0.547 Sum_probs=93.3
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||++.|..++..+++++|++++|||++++.++..+..|+..+.... ....+|+++|+||+|+.. ..+..+.+..
T Consensus 53 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~ivv~nK~D~~~~~~~~~~~~~~ 129 (160)
T cd00876 53 DTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVK---DDEDIPIVLVGNKCDLENERQVSKEEGKA 129 (160)
T ss_pred ECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCcEEEEEECCcccccceecHHHHHH
Confidence 899999999999999999999999999999999999999988886433 335799999999999976 5667788888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDV 110 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 110 (142)
++..++ .+++++|++++.|++++|.+|...
T Consensus 130 ~~~~~~-~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 130 LAKEWG-CPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred HHHHcC-CcEEEeccCCCCCHHHHHHHHHhh
Confidence 888877 679999999999999999999875
No 112
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.78 E-value=3.7e-18 Score=113.59 Aligned_cols=105 Identities=24% Similarity=0.362 Sum_probs=84.3
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||++.|..++..+++++|++++|+|++++.++.....|+..+.+ .....++|+++|+||+|+.. ....+.+..+
T Consensus 56 Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~---~~~~~~~p~ilv~NK~D~~~-~~~~~~~~~~ 131 (167)
T cd04160 56 DLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLR---NEALEGVPLLILANKQDLPD-ALSVEEIKEV 131 (167)
T ss_pred ECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHh---ChhhcCCCEEEEEEcccccc-CCCHHHHHHH
Confidence 8999999999999999999999999999999888888888877752 22335799999999999865 3344455554
Q ss_pred HHHc------CCceEEEeeccCCCCHHHHHHHHHH
Q psy10891 81 YKEH------NFIGWTETSTKEGLMVNDSMKFLLD 109 (142)
Q Consensus 81 ~~~~------~~~~~~~~Sa~~~~~i~~l~~~l~~ 109 (142)
.... ...+++++||++|.|+++++.+|..
T Consensus 132 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 132 FQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred hccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 4332 1246999999999999999999864
No 113
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.78 E-value=5.4e-18 Score=115.27 Aligned_cols=106 Identities=16% Similarity=0.237 Sum_probs=87.0
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||++++..+|..+++++|++++|+|+++..++.....|+..+. +.....+.|+++++||+|+.. .+..+++..+
T Consensus 69 D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~---~~~~~~~~pvivv~NK~Dl~~-~~~~~~~~~~ 144 (190)
T cd00879 69 DLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLL---SDEELANVPFLILGNKIDLPG-AVSEEELRQA 144 (190)
T ss_pred ECCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHH---cCccccCCCEEEEEeCCCCCC-CcCHHHHHHH
Confidence 899999999999999999999999999999999988788887775 222345799999999999864 4566677666
Q ss_pred HHHcC---------------CceEEEeeccCCCCHHHHHHHHHHH
Q psy10891 81 YKEHN---------------FIGWTETSTKEGLMVNDSMKFLLDV 110 (142)
Q Consensus 81 ~~~~~---------------~~~~~~~Sa~~~~~i~~l~~~l~~~ 110 (142)
+.... ..++++|||+++.|+.++|.+|.++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 145 LGLYGTTTGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred hCcccccccccccccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 64321 1358999999999999999999875
No 114
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.78 E-value=3.2e-18 Score=115.12 Aligned_cols=104 Identities=18% Similarity=0.200 Sum_probs=81.2
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|..++..+++++|++++|+|++++.++.....|+..+.. .....++|+++++||+|+.. ....+++...
T Consensus 65 D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~---~~~~~~~p~viv~NK~Dl~~-~~~~~~i~~~ 140 (174)
T cd04153 65 DIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLA---HEDLRKAVLLVLANKQDLKG-AMTPAEISES 140 (174)
T ss_pred ECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHh---chhhcCCCEEEEEECCCCCC-CCCHHHHHHH
Confidence 8999999999999999999999999999999999887777766642 22235799999999999864 2333333222
Q ss_pred H-----HHcCCceEEEeeccCCCCHHHHHHHHHH
Q psy10891 81 Y-----KEHNFIGWTETSTKEGLMVNDSMKFLLD 109 (142)
Q Consensus 81 ~-----~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 109 (142)
. ...+ .++++|||++|.|++++|++|.+
T Consensus 141 l~~~~~~~~~-~~~~~~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 141 LGLTSIRDHT-WHIQGCCALTGEGLPEGLDWIAS 173 (174)
T ss_pred hCcccccCCc-eEEEecccCCCCCHHHHHHHHhc
Confidence 2 1222 35899999999999999999864
No 115
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.77 E-value=9.8e-18 Score=109.84 Aligned_cols=103 Identities=41% Similarity=0.629 Sum_probs=90.5
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC-CCCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP-HRQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~-~~~~~~~~~~~ 79 (142)
||||++.|..++..+++++|++++|+|++++.++..+..|+..+... .....|+++++||+|+. ......+.+..
T Consensus 55 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~----~~~~~p~ivv~nK~D~~~~~~~~~~~~~~ 130 (159)
T cd00154 55 DTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEY----APENIPIILVGNKIDLEDQRQVSTEEAQQ 130 (159)
T ss_pred ecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHh----CCCCCcEEEEEEcccccccccccHHHHHH
Confidence 89999999999999999999999999999999999999999888532 22579999999999996 35567788888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLL 108 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 108 (142)
++...+ .+++++|++++.|+.++|.+|.
T Consensus 131 ~~~~~~-~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 131 FAKENG-LLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred HHHHcC-CeEEEEecCCCCCHHHHHHHHh
Confidence 888876 5699999999999999999885
No 116
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.77 E-value=5.2e-18 Score=112.16 Aligned_cols=105 Identities=21% Similarity=0.260 Sum_probs=81.1
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||++++..++..++.++|++++|+|++++.++.....|+..+.+ .....++|+++|+||+|+.. ......+...
T Consensus 50 D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~---~~~~~~~piilv~nK~Dl~~-~~~~~~i~~~ 125 (160)
T cd04156 50 DVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILK---NEHIKGVPVVLLANKQDLPG-ALTAEEITRR 125 (160)
T ss_pred ECCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHh---chhhcCCCEEEEEECccccc-CcCHHHHHHH
Confidence 8999999999999999999999999999999999988888877752 22235799999999999854 2223333322
Q ss_pred HH--Hc---CCceEEEeeccCCCCHHHHHHHHHH
Q psy10891 81 YK--EH---NFIGWTETSTKEGLMVNDSMKFLLD 109 (142)
Q Consensus 81 ~~--~~---~~~~~~~~Sa~~~~~i~~l~~~l~~ 109 (142)
.. .+ ...++++|||++|.|++++|.+|.+
T Consensus 126 ~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 126 FKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred cCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 11 11 1135889999999999999999864
No 117
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.77 E-value=9.5e-18 Score=110.94 Aligned_cols=105 Identities=18% Similarity=0.199 Sum_probs=78.1
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|..++..++.++|++++|+|++++.++.....|+..+. +.....+.|+++|+||+|+... .....+...
T Consensus 49 Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~~piiiv~nK~Dl~~~-~~~~~i~~~ 124 (158)
T cd04151 49 DLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAML---EEEELKGAVLLVFANKQDMPGA-LSEAEISEK 124 (158)
T ss_pred ECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHH---hchhhcCCcEEEEEeCCCCCCC-CCHHHHHHH
Confidence 899999999999999999999999999999988876666655443 1112257899999999998642 222222221
Q ss_pred HHHc----CCceEEEeeccCCCCHHHHHHHHHH
Q psy10891 81 YKEH----NFIGWTETSTKEGLMVNDSMKFLLD 109 (142)
Q Consensus 81 ~~~~----~~~~~~~~Sa~~~~~i~~l~~~l~~ 109 (142)
.... ...+++++||+++.|++++|++|++
T Consensus 125 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 125 LGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred hCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 1110 0135999999999999999999874
No 118
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.77 E-value=7.7e-18 Score=112.62 Aligned_cols=105 Identities=21% Similarity=0.270 Sum_probs=82.0
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHH-
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIEC- 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~- 79 (142)
||||++++..+|..|++++|++++|||++++.++..+..|+..+.+ .....++|+++|+||+|+... ....++..
T Consensus 49 D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~---~~~~~~~piliv~NK~Dl~~~-~~~~~i~~~ 124 (167)
T cd04161 49 DLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQ---HPRVSGKPILVLANKQDKKNA-LLGADVIEY 124 (167)
T ss_pred ECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHc---CccccCCcEEEEEeCCCCcCC-CCHHHHHHh
Confidence 8999999999999999999999999999999999999999888862 223357999999999998652 22222222
Q ss_pred -----HHHHcCC-ceEEEeeccCC------CCHHHHHHHHHH
Q psy10891 80 -----FYKEHNF-IGWTETSTKEG------LMVNDSMKFLLD 109 (142)
Q Consensus 80 -----~~~~~~~-~~~~~~Sa~~~------~~i~~l~~~l~~ 109 (142)
+++..+. .++++|||++| .|+.+.|.||..
T Consensus 125 ~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 125 LSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred cCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHhc
Confidence 2222222 34777999998 899999999964
No 119
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.77 E-value=8.7e-18 Score=112.07 Aligned_cols=104 Identities=25% Similarity=0.415 Sum_probs=87.6
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-C--------
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-R-------- 70 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~-------- 70 (142)
||||+++|..++..+++.+|++++|||++++.++.... .|+..+.... .++|+++|+||+|+.. .
T Consensus 54 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ivv~nK~Dl~~~~~~~~~~~~ 128 (171)
T cd00157 54 DTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYC-----PNVPIILVGTKIDLRDDENTLKKLEK 128 (171)
T ss_pred eCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-----CCCCEEEEEccHHhhhchhhhhhccc
Confidence 89999999999999999999999999999999988754 5777775433 4799999999999865 2
Q ss_pred ---CCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHH
Q psy10891 71 ---QVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLD 109 (142)
Q Consensus 71 ---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 109 (142)
.+..+....++..++..+++++||+++.|+.++|..|+.
T Consensus 129 ~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 129 GKEPITPEEGEKLAKEIGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred CCCccCHHHHHHHHHHhCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 134667777888888658999999999999999999875
No 120
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.76 E-value=1.1e-17 Score=112.62 Aligned_cols=102 Identities=17% Similarity=0.197 Sum_probs=80.6
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|..++..+++++|++|+|||+++..++.....|..... .++|+++|+||+|+... ........+
T Consensus 73 Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~--------~~~~iiiv~NK~Dl~~~-~~~~~~~~~ 143 (179)
T cd01890 73 DTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE--------NNLEIIPVINKIDLPSA-DPERVKQQI 143 (179)
T ss_pred ECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH--------cCCCEEEEEECCCCCcC-CHHHHHHHH
Confidence 899999999999999999999999999998777776666654332 46899999999998541 122233455
Q ss_pred HHHcCCc--eEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 81 YKEHNFI--GWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 81 ~~~~~~~--~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
++.++.. +++++||++|.|++++|.+|...+
T Consensus 144 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 144 EDVLGLDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred HHHhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 6666642 389999999999999999998764
No 121
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.76 E-value=2.4e-17 Score=108.81 Aligned_cols=105 Identities=17% Similarity=0.288 Sum_probs=84.0
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|..++..++.++|++++|||++++.++.....|+..+... ....+.|+++|+||+|+... ...++....
T Consensus 49 D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~---~~~~~~piiiv~nK~D~~~~-~~~~~~~~~ 124 (158)
T cd00878 49 DVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNE---EELKGVPLLIFANKQDLPGA-LSVSELIEK 124 (158)
T ss_pred ECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhC---cccCCCcEEEEeeccCCccc-cCHHHHHHh
Confidence 89999999999999999999999999999999999988888777532 23468999999999998652 233344433
Q ss_pred HHHc----CCceEEEeeccCCCCHHHHHHHHHH
Q psy10891 81 YKEH----NFIGWTETSTKEGLMVNDSMKFLLD 109 (142)
Q Consensus 81 ~~~~----~~~~~~~~Sa~~~~~i~~l~~~l~~ 109 (142)
.... ...+++++||++|.|++++|.+|..
T Consensus 125 ~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 125 LGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred hChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 3221 2246999999999999999999875
No 122
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.75 E-value=1.8e-17 Score=112.45 Aligned_cols=106 Identities=13% Similarity=0.207 Sum_probs=84.1
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||++++..++..|+.++|++++|+|++++.++.....|+..+.. .....++|+++|+||+|+.. .+..+++...
T Consensus 67 D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~---~~~~~~~piliv~NK~Dl~~-~~~~~~i~~~ 142 (184)
T smart00178 67 DLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLS---DEELATVPFLILGNKIDAPY-AASEDELRYA 142 (184)
T ss_pred ECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHc---ChhhcCCCEEEEEeCccccC-CCCHHHHHHH
Confidence 8999999999999999999999999999999999888888776642 11235789999999999853 3455555544
Q ss_pred HHHc-----------CCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891 81 YKEH-----------NFIGWTETSTKEGLMVNDSMKFLLDV 110 (142)
Q Consensus 81 ~~~~-----------~~~~~~~~Sa~~~~~i~~l~~~l~~~ 110 (142)
.... ....+++|||+++.|+++++++|...
T Consensus 143 l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 143 LGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred cCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence 3211 22348899999999999999999764
No 123
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.75 E-value=7.5e-17 Score=111.87 Aligned_cols=107 Identities=31% Similarity=0.541 Sum_probs=91.1
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||+|+++|..++..++.+++++++|||+++..||..+..|+..+.... .++|+++|+||+|+..+.+..+. ..+
T Consensus 64 Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-----~~~~i~lv~nK~Dl~~~~~~~~~-~~~ 137 (215)
T PTZ00132 64 DTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC-----ENIPIVLVGNKVDVKDRQVKARQ-ITF 137 (215)
T ss_pred ECCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECccCccccCCHHH-HHH
Confidence 799999999999999999999999999999999999999998886443 57999999999998654343443 346
Q ss_pred HHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 81 YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
+...+ ..++++||+++.|+.++|.+|++.+...
T Consensus 138 ~~~~~-~~~~e~Sa~~~~~v~~~f~~ia~~l~~~ 170 (215)
T PTZ00132 138 HRKKN-LQYYDISAKSNYNFEKPFLWLARRLTND 170 (215)
T ss_pred HHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHhhc
Confidence 66666 4699999999999999999999988764
No 124
>KOG4423|consensus
Probab=99.74 E-value=8.5e-18 Score=111.55 Aligned_cols=135 Identities=39% Similarity=0.679 Sum_probs=111.7
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC--CCCCHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH--RQVDINDIE 78 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~--~~~~~~~~~ 78 (142)
|.+||++|..|+..||+.+++.++|||++...+|+....|..++....+......+|+|+.+||||... .......+.
T Consensus 81 dIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d 160 (229)
T KOG4423|consen 81 DIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFD 160 (229)
T ss_pred cchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHH
Confidence 789999999999999999999999999999999999999999987665555567789999999999876 222346778
Q ss_pred HHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhCCCCCCCCCCCccccccCCC
Q psy10891 79 CFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFPNNDDENMVKLSGPA 135 (142)
Q Consensus 79 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (142)
.++++.|+...+++|++.+.++.+.-..++++++-+..+.........+.+++..-+
T Consensus 161 ~f~kengf~gwtets~Kenkni~Ea~r~lVe~~lvnd~q~~~s~~~~~~~~~l~~~~ 217 (229)
T KOG4423|consen 161 NFKKENGFEGWTETSAKENKNIPEAQRELVEKILVNDEQPIKSSAVDGDKINLRLMQ 217 (229)
T ss_pred HHHhccCccceeeeccccccChhHHHHHHHHHHHhhccCCcccccccccccCccccC
Confidence 889999999999999999999999999999999987654444444455555554433
No 125
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.74 E-value=2.3e-17 Score=107.20 Aligned_cols=96 Identities=18% Similarity=0.123 Sum_probs=75.4
Q ss_pred CCCcc-----hhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHH
Q psy10891 1 MTEGQ-----ERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDIN 75 (142)
Q Consensus 1 Dt~G~-----e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~ 75 (142)
||||+ +.|..+.. .++++|++++|||++++.++.. ..|.... ..|+++|+||+|+.++....+
T Consensus 41 Dt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d~~~~~s~~~-~~~~~~~----------~~p~ilv~NK~Dl~~~~~~~~ 108 (142)
T TIGR02528 41 DTPGEYVENRRLYSALIV-TAADADVIALVQSATDPESRFP-PGFASIF----------VKPVIGLVTKIDLAEADVDIE 108 (142)
T ss_pred cCchhhhhhHHHHHHHHH-HhhcCCEEEEEecCCCCCcCCC-hhHHHhc----------cCCeEEEEEeeccCCcccCHH
Confidence 89998 44555555 5899999999999999988765 3454322 249999999999865445566
Q ss_pred HHHHHHHHcCCceEEEeeccCCCCHHHHHHHHH
Q psy10891 76 DIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108 (142)
Q Consensus 76 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 108 (142)
....+++..+..+++++||+++.|++++|.++.
T Consensus 109 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 109 RAKELLETAGAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred HHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence 677778777765799999999999999998874
No 126
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.71 E-value=1.7e-16 Score=109.25 Aligned_cols=97 Identities=24% Similarity=0.326 Sum_probs=76.4
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhccc---------------CCCCCCCEEEEEeCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTL---------------SDGSPIPCMLLANKC 65 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~---------------~~~~~~p~ilv~nK~ 65 (142)
||+|+++|..++..||+++|++|+|||++++.||+.+..|+.++...... ....++|+||||||+
T Consensus 60 DtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~ 139 (202)
T cd04102 60 DVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKL 139 (202)
T ss_pred ecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECc
Confidence 89999999999999999999999999999999999999999998642100 012479999999999
Q ss_pred CCCC-CCCCHH----HHHHHHHHcCCceEEEeeccCCC
Q psy10891 66 DLPH-RQVDIN----DIECFYKEHNFIGWTETSTKEGL 98 (142)
Q Consensus 66 D~~~-~~~~~~----~~~~~~~~~~~~~~~~~Sa~~~~ 98 (142)
|+.+ +.+... ....++...+ .+.++.++.++.
T Consensus 140 Dl~~~r~~~~~~~~~~~~~ia~~~~-~~~i~~~c~~~~ 176 (202)
T cd04102 140 DQIPEKESSGNLVLTARGFVAEQGN-AEEINLNCTNGR 176 (202)
T ss_pred cchhhcccchHHHhhHhhhHHHhcC-CceEEEecCCcc
Confidence 9865 333332 2334677788 568888888764
No 127
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.69 E-value=3.5e-16 Score=105.45 Aligned_cols=107 Identities=23% Similarity=0.372 Sum_probs=85.6
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
|.+|+..++.+|+.|+.++|++|||+|.++...+......+..+. ......++|+++++||+|+.. ....+++...
T Consensus 64 d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll---~~~~~~~~piLIl~NK~D~~~-~~~~~~i~~~ 139 (175)
T PF00025_consen 64 DLGGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELL---NDPELKDIPILILANKQDLPD-AMSEEEIKEY 139 (175)
T ss_dssp EESSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHH---TSGGGTTSEEEEEEESTTSTT-SSTHHHHHHH
T ss_pred eccccccccccceeeccccceeEEEEecccceeecccccchhhhc---chhhcccceEEEEeccccccC-cchhhHHHhh
Confidence 679999999999999999999999999999888888777776665 222335899999999999864 4556666554
Q ss_pred HHHcC-----CceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 81 YKEHN-----FIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 81 ~~~~~-----~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
..... -..++.|||.+|+|+.+.|+||.+++
T Consensus 140 l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 140 LGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp TTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred hhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhcC
Confidence 43221 13478899999999999999999875
No 128
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.68 E-value=1e-15 Score=100.34 Aligned_cols=105 Identities=19% Similarity=0.267 Sum_probs=79.7
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|..++..++.++|++++|+|++++.++.....|+..+. ......++|+++|+||+|+.... ........
T Consensus 50 D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~~p~iiv~nK~D~~~~~-~~~~~~~~ 125 (159)
T cd04159 50 DLGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLL---EKPSLEGIPLLVLGNKNDLPGAL-SVDELIEQ 125 (159)
T ss_pred ECCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHH---cChhhcCCCEEEEEeCccccCCc-CHHHHHHH
Confidence 899999999999999999999999999999988888777777664 22223578999999999986521 22222111
Q ss_pred HH--H--cCCceEEEeeccCCCCHHHHHHHHHH
Q psy10891 81 YK--E--HNFIGWTETSTKEGLMVNDSMKFLLD 109 (142)
Q Consensus 81 ~~--~--~~~~~~~~~Sa~~~~~i~~l~~~l~~ 109 (142)
.. . ....+++++|++++.|+++++.+|.+
T Consensus 126 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 126 MNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred hCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 11 1 11145899999999999999999875
No 129
>PLN00023 GTP-binding protein; Provisional
Probab=99.67 E-value=1.8e-15 Score=109.75 Aligned_cols=88 Identities=20% Similarity=0.480 Sum_probs=73.3
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhccc--------CCCCCCCEEEEEeCCCCCCC--
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTL--------SDGSPIPCMLLANKCDLPHR-- 70 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~--------~~~~~~p~ilv~nK~D~~~~-- 70 (142)
||+||++|..+++.||++++++|+|||+++..||+.+..|+..+...... ....++|++||+||+|+..+
T Consensus 89 DTAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~ 168 (334)
T PLN00023 89 DVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEG 168 (334)
T ss_pred ECCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccc
Confidence 89999999999999999999999999999999999999999999744210 00135899999999998652
Q ss_pred --C---CCHHHHHHHHHHcCCce
Q psy10891 71 --Q---VDINDIECFYKEHNFIG 88 (142)
Q Consensus 71 --~---~~~~~~~~~~~~~~~~~ 88 (142)
. +..+.+..|++..++.+
T Consensus 169 ~r~~s~~~~e~a~~~A~~~g~l~ 191 (334)
T PLN00023 169 TRGSSGNLVDAARQWVEKQGLLP 191 (334)
T ss_pred ccccccccHHHHHHHHHHcCCCc
Confidence 1 35788999999998754
No 130
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.66 E-value=1.4e-15 Score=101.39 Aligned_cols=108 Identities=13% Similarity=0.103 Sum_probs=79.0
Q ss_pred CCCcch----hhhhhhHhhh---ccCCEEEEEEeCCCh-hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC
Q psy10891 1 MTEGQE----RFTWMTRVYY---KDAHGCIIMFDLTNQ-NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV 72 (142)
Q Consensus 1 Dt~G~e----~~~~~~~~~~---~~ad~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~ 72 (142)
||||+. .+..++..++ ..+|++++|+|++++ .+++.+..|...+.... ....++|+++|+||+|+.....
T Consensus 54 DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~--~~~~~~p~ivv~NK~Dl~~~~~ 131 (170)
T cd01898 54 DIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYN--PELLEKPRIVVLNKIDLLDEEE 131 (170)
T ss_pred ecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhC--ccccccccEEEEEchhcCCchh
Confidence 899963 3333444444 459999999999998 78888889988876432 1124689999999999866333
Q ss_pred CHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891 73 DINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDV 110 (142)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 110 (142)
..+....+.......+++++||+++.|++++|.++.++
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 132 LFELLKELLKELWGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred hHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 34445555555322569999999999999999998865
No 131
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.66 E-value=1.5e-15 Score=101.63 Aligned_cols=102 Identities=17% Similarity=0.210 Sum_probs=78.9
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||++++...+..+++++|++++|+|+++..++.....|+..+.. .....++|+++++||+|+.. ...... +
T Consensus 64 D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~---~~~~~~~p~ivv~nK~D~~~-~~~~~~---i 136 (173)
T cd04155 64 DIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLE---EEKLAGVPVLVFANKQDLAT-AAPAEE---I 136 (173)
T ss_pred ECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHh---ChhhcCCCEEEEEECCCCcc-CCCHHH---H
Confidence 8999999999999999999999999999998888887777766542 22235799999999999854 222222 3
Q ss_pred HHHcCC-------ceEEEeeccCCCCHHHHHHHHHH
Q psy10891 81 YKEHNF-------IGWTETSTKEGLMVNDSMKFLLD 109 (142)
Q Consensus 81 ~~~~~~-------~~~~~~Sa~~~~~i~~l~~~l~~ 109 (142)
....+. .+++++||++|.|++++|++|++
T Consensus 137 ~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 137 AEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred HHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence 333332 13679999999999999999975
No 132
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.64 E-value=2.6e-15 Score=99.68 Aligned_cols=101 Identities=15% Similarity=0.176 Sum_probs=77.1
Q ss_pred CCCcc-----hhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHH
Q psy10891 1 MTEGQ-----ERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDIN 75 (142)
Q Consensus 1 Dt~G~-----e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~ 75 (142)
||||+ +.+..+. ..+.++|++++|+|+++..++.. .|+..+. .+.|+++++||+|+.. ...+
T Consensus 43 DtpG~~~~~~~~~~~~~-~~~~~ad~il~v~d~~~~~s~~~--~~~~~~~--------~~~~ii~v~nK~Dl~~--~~~~ 109 (158)
T PRK15467 43 DTPGEYFSHPRWYHALI-TTLQDVDMLIYVHGANDPESRLP--AGLLDIG--------VSKRQIAVISKTDMPD--ADVA 109 (158)
T ss_pred cCCccccCCHHHHHHHH-HHHhcCCEEEEEEeCCCcccccC--HHHHhcc--------CCCCeEEEEEccccCc--ccHH
Confidence 89997 4333333 34789999999999998876633 4544431 3679999999999854 3456
Q ss_pred HHHHHHHHcCC-ceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 76 DIECFYKEHNF-IGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 76 ~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
.+..++...++ .|++++||+++.|++++|..+.+.+.+.
T Consensus 110 ~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~~ 149 (158)
T PRK15467 110 ATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTKQE 149 (158)
T ss_pred HHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhchhh
Confidence 66777777775 4799999999999999999998887654
No 133
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.64 E-value=3.3e-15 Score=98.75 Aligned_cols=99 Identities=10% Similarity=0.035 Sum_probs=69.4
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCC---hhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCC---CCH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTN---QNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQ---VDI 74 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~---~~~ 74 (142)
||||+++|......+++++|++++|+|+++ +.+...+. ++... ...|+++|+||+|+.... ...
T Consensus 57 DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~-~~~~~---------~~~~~ilv~NK~Dl~~~~~~~~~~ 126 (164)
T cd04171 57 DVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLE-ILELL---------GIKRGLVVLTKADLVDEDWLELVE 126 (164)
T ss_pred ECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHH-HHHHh---------CCCcEEEEEECccccCHHHHHHHH
Confidence 899999998888888999999999999987 33333222 11111 124999999999986421 112
Q ss_pred HHHHHHHHHc--CCceEEEeeccCCCCHHHHHHHHHH
Q psy10891 75 NDIECFYKEH--NFIGWTETSTKEGLMVNDSMKFLLD 109 (142)
Q Consensus 75 ~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~l~~~l~~ 109 (142)
..+..++... ...+++++||+++.|+++++..+.+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 127 EEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred HHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 3333344432 2256999999999999999988754
No 134
>KOG3883|consensus
Probab=99.64 E-value=5.6e-15 Score=95.41 Aligned_cols=119 Identities=22% Similarity=0.349 Sum_probs=100.6
Q ss_pred CCCcchhh-hhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHH
Q psy10891 1 MTEGQERF-TWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIE 78 (142)
Q Consensus 1 Dt~G~e~~-~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~ 78 (142)
||+|...+ ..+-..|+.-+|++++||+..+++||+.++-+...|.+ ..+...+|+++.+||+|+.+ +.+..+...
T Consensus 66 DTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk---~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~ 142 (198)
T KOG3883|consen 66 DTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDK---HKDKKEVPIVVLANKRDRAEPREVDMDVAQ 142 (198)
T ss_pred ecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhh---ccccccccEEEEechhhcccchhcCHHHHH
Confidence 78997777 55678899999999999999999999998877777763 33667899999999999977 788999999
Q ss_pred HHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhCCCCCCCC
Q psy10891 79 CFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFPNN 123 (142)
Q Consensus 79 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~~~~~~~ 123 (142)
.||+.... ..+++++.+...+-+.|..+...+........+|..
T Consensus 143 ~Wa~rEkv-kl~eVta~dR~sL~epf~~l~~rl~~pqskS~Fpl~ 186 (198)
T KOG3883|consen 143 IWAKREKV-KLWEVTAMDRPSLYEPFTYLASRLHQPQSKSTFPLS 186 (198)
T ss_pred HHHhhhhe-eEEEEEeccchhhhhHHHHHHHhccCCcccccCcch
Confidence 99999884 499999999999999999999888776655555544
No 135
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.63 E-value=6.4e-15 Score=108.31 Aligned_cols=112 Identities=11% Similarity=0.045 Sum_probs=82.0
Q ss_pred CCCcchh----hhhhh---HhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCC
Q psy10891 1 MTEGQER----FTWMT---RVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQV 72 (142)
Q Consensus 1 Dt~G~e~----~~~~~---~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~ 72 (142)
||||.-. ...+. -.+++.++++++|+|+++..+++.+..|..++..+. ....++|+++|+||+|+.. ..+
T Consensus 212 D~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~--~~L~~kp~IIV~NKiDL~~~~~~ 289 (335)
T PRK12299 212 DIPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYS--PELADKPRILVLNKIDLLDEEEE 289 (335)
T ss_pred eCCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhh--hhcccCCeEEEEECcccCCchhH
Confidence 7898632 11233 334567999999999998878999999998886432 1124689999999999865 223
Q ss_pred CHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 73 DINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
.......++...+ .+++++||+++.|+++++.+|...+.+..
T Consensus 290 ~~~~~~~~~~~~~-~~i~~iSAktg~GI~eL~~~L~~~l~~~~ 331 (335)
T PRK12299 290 REKRAALELAALG-GPVFLISAVTGEGLDELLRALWELLEEAR 331 (335)
T ss_pred HHHHHHHHHHhcC-CCEEEEEcCCCCCHHHHHHHHHHHHHhhh
Confidence 3334444555555 46999999999999999999999886643
No 136
>KOG0073|consensus
Probab=99.62 E-value=6.4e-15 Score=95.99 Aligned_cols=109 Identities=21% Similarity=0.309 Sum_probs=87.5
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHH----
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDIND---- 76 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~---- 76 (142)
|.+||..++..|+.||..+|++|||+|+.|+..++.....+..+. ......+.|+++++||.|+.. .+..+.
T Consensus 66 DvGGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL---~eerlaG~~~Lvlank~dl~~-~l~~~~i~~~ 141 (185)
T KOG0073|consen 66 DVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELL---VEERLAGAPLLVLANKQDLPG-ALSLEEISKA 141 (185)
T ss_pred EcCCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHH---hhhhhcCCceEEEEecCcCcc-ccCHHHHHHh
Confidence 789999999999999999999999999999988888776655554 333446799999999999974 233333
Q ss_pred --HHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 77 --IECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 77 --~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
+..+++.+. .+.+-||+.+|+++.+-++|++..++++
T Consensus 142 ~~L~~l~ks~~-~~l~~cs~~tge~l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 142 LDLEELAKSHH-WRLVKCSAVTGEDLLEGIDWLCDDLMSR 180 (185)
T ss_pred hCHHHhccccC-ceEEEEeccccccHHHHHHHHHHHHHHH
Confidence 333445555 4589999999999999999999999875
No 137
>KOG0070|consensus
Probab=99.62 E-value=1.1e-14 Score=96.67 Aligned_cols=109 Identities=18% Similarity=0.283 Sum_probs=87.0
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
|.+||++++.+|+.|+.+.+++|||+|.+|..-+...+.-+..+. ......++|+++.+||.|+.. ..+..++...
T Consensus 67 DvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l---~~~~l~~~~llv~aNKqD~~~-als~~ei~~~ 142 (181)
T KOG0070|consen 67 DVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRML---AEPELRNAPLLVFANKQDLPG-ALSAAEITNK 142 (181)
T ss_pred ecCCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHH---cCcccCCceEEEEechhhccc-cCCHHHHHhH
Confidence 789999999999999999999999999999988887776665555 333456899999999999875 4455555555
Q ss_pred HHHcCCc----eEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 81 YKEHNFI----GWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 81 ~~~~~~~----~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
.....+. .+..|||.+|+|+.+.++++...+..
T Consensus 143 L~l~~l~~~~w~iq~~~a~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 143 LGLHSLRSRNWHIQSTCAISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred hhhhccCCCCcEEeeccccccccHHHHHHHHHHHHhc
Confidence 4443321 25679999999999999999988754
No 138
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.61 E-value=6e-15 Score=115.57 Aligned_cols=104 Identities=13% Similarity=0.135 Sum_probs=82.8
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|...+..+++.+|++|+|+|+++..+......|...+. .++|+++|+||+|+... ........+
T Consensus 76 DTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~--------~~ipiIiViNKiDl~~~-~~~~~~~el 146 (595)
T TIGR01393 76 DTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE--------NDLEIIPVINKIDLPSA-DPERVKKEI 146 (595)
T ss_pred ECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH--------cCCCEEEEEECcCCCcc-CHHHHHHHH
Confidence 899999999999999999999999999999777777667765542 46899999999998541 122333455
Q ss_pred HHHcCCc--eEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 81 YKEHNFI--GWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 81 ~~~~~~~--~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
...++.. .++++||++|.|+.++|+.|...+..
T Consensus 147 ~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~ 181 (595)
T TIGR01393 147 EEVIGLDASEAILASAKTGIGIEEILEAIVKRVPP 181 (595)
T ss_pred HHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 5555542 48999999999999999999887743
No 139
>KOG0075|consensus
Probab=99.61 E-value=1.9e-15 Score=96.97 Aligned_cols=105 Identities=19% Similarity=0.270 Sum_probs=80.9
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
|.+||.+|+++|+.|+++.+++++|+|+.++..+...+.-+..+. ..+.-.++|+++.|||.|+.. ......+.
T Consensus 71 D~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL---~k~~l~gip~LVLGnK~d~~~-AL~~~~li-- 144 (186)
T KOG0075|consen 71 DLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLL---DKPSLTGIPLLVLGNKIDLPG-ALSKIALI-- 144 (186)
T ss_pred ecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHh---cchhhcCCcEEEecccccCcc-cccHHHHH--
Confidence 789999999999999999999999999999887776665555544 222346899999999999875 22333322
Q ss_pred HHHcCC-------ceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 81 YKEHNF-------IGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 81 ~~~~~~-------~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
...|. .-.|.+|++...+++.+++||+++.-
T Consensus 145 -~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 145 -ERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEHSK 182 (186)
T ss_pred -HHhCccccccceEEEEEEEEcCCccHHHHHHHHHHHhh
Confidence 22332 12678999999999999999998764
No 140
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.61 E-value=1.1e-14 Score=95.78 Aligned_cols=100 Identities=12% Similarity=0.071 Sum_probs=73.8
Q ss_pred CCCcchhhhh------hhHhhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC
Q psy10891 1 MTEGQERFTW------MTRVYYK--DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV 72 (142)
Q Consensus 1 Dt~G~e~~~~------~~~~~~~--~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~ 72 (142)
||||++.+.. ++..++. ++|++++|+|++++.+.. .|...+.. .++|+++|+||+|+.....
T Consensus 49 DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~---~~~~~~~~-------~~~~~iiv~NK~Dl~~~~~ 118 (158)
T cd01879 49 DLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERNL---YLTLQLLE-------LGLPVVVALNMIDEAEKRG 118 (158)
T ss_pred ECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhHH---HHHHHHHH-------cCCCEEEEEehhhhccccc
Confidence 8999988775 3566665 999999999998865432 34444421 3689999999999965222
Q ss_pred CHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 73 DINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
.......+...++ .+++++||.++.|+.+++.++...+
T Consensus 119 ~~~~~~~~~~~~~-~~~~~iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 119 IKIDLDKLSELLG-VPVVPTSARKGEGIDELKDAIAELA 156 (158)
T ss_pred chhhHHHHHHhhC-CCeEEEEccCCCCHHHHHHHHHHHh
Confidence 2223455666667 4699999999999999999987753
No 141
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.60 E-value=9.1e-15 Score=97.31 Aligned_cols=87 Identities=16% Similarity=0.156 Sum_probs=63.6
Q ss_pred cCCEEEEEEeCCChhhH--HHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeecc
Q psy10891 18 DAHGCIIMFDLTNQNSF--KNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTK 95 (142)
Q Consensus 18 ~ad~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 95 (142)
.+|++++|+|+++..++ .....|+..+.... .+.|+++|+||+|+..... ......+....+ .++++|||+
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-----~~~pvilv~NK~Dl~~~~~-~~~~~~~~~~~~-~~~~~~Sa~ 151 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-----KNKPVIVVLNKIDLLTFED-LSEIEEEEELEG-EEVLKISTL 151 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-----CcCCeEEEEEccccCchhh-HHHHHHhhhhcc-CceEEEEec
Confidence 46899999999987543 55557877775322 4789999999999865211 111334444433 569999999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy10891 96 EGLMVNDSMKFLLDVL 111 (142)
Q Consensus 96 ~~~~i~~l~~~l~~~~ 111 (142)
++.|++++|.++...+
T Consensus 152 ~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 152 TEEGVDEVKNKACELL 167 (168)
T ss_pred ccCCHHHHHHHHHHHh
Confidence 9999999999998875
No 142
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.60 E-value=5.1e-15 Score=104.71 Aligned_cols=95 Identities=16% Similarity=0.168 Sum_probs=77.3
Q ss_pred chhhhhhhHhhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHHHHH
Q psy10891 5 QERFTWMTRVYYKDAHGCIIMFDLTNQN-SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIECFYK 82 (142)
Q Consensus 5 ~e~~~~~~~~~~~~ad~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~~~~ 82 (142)
.++|+.+.+.+++++|++++|||++++. |+..+..|+..+.. .++|+++|+||+|+.+ +.+..+....+ .
T Consensus 23 ~eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~-------~~i~~vIV~NK~DL~~~~~~~~~~~~~~-~ 94 (245)
T TIGR00157 23 AERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA-------QNIEPIIVLNKIDLLDDEDMEKEQLDIY-R 94 (245)
T ss_pred ecccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH-------CCCCEEEEEECcccCCCHHHHHHHHHHH-H
Confidence 4889999999999999999999999887 89999999877631 5799999999999965 32223344433 4
Q ss_pred HcCCceEEEeeccCCCCHHHHHHHHH
Q psy10891 83 EHNFIGWTETSTKEGLMVNDSMKFLL 108 (142)
Q Consensus 83 ~~~~~~~~~~Sa~~~~~i~~l~~~l~ 108 (142)
..+ .+++++||+++.|++++|..+.
T Consensus 95 ~~g-~~v~~~SAktg~gi~eLf~~l~ 119 (245)
T TIGR00157 95 NIG-YQVLMTSSKNQDGLKELIEALQ 119 (245)
T ss_pred HCC-CeEEEEecCCchhHHHHHhhhc
Confidence 466 5699999999999999998875
No 143
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.58 E-value=5.7e-14 Score=93.31 Aligned_cols=104 Identities=20% Similarity=0.134 Sum_probs=71.4
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC--CHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV--DINDIE 78 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~ 78 (142)
||||++.|..++..++..+|++++|+|+++........ .+..+. ..++|+++|+||+|+..... ......
T Consensus 56 DtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~-~~~~~~-------~~~~p~ivv~NK~Dl~~~~~~~~~~~~~ 127 (168)
T cd01887 56 DTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTIE-AIKLAK-------AANVPFIVALNKIDKPNANPERVKNELS 127 (168)
T ss_pred eCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHHH-HHHHHH-------HcCCCEEEEEEceecccccHHHHHHHHH
Confidence 89999999999999999999999999998743222211 122221 14689999999999864110 011111
Q ss_pred HHHH----HcC-CceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 79 CFYK----EHN-FIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 79 ~~~~----~~~-~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
.+.. ..+ ..+++++|++++.|+.+++++|.++..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 128 ELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred HhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhhh
Confidence 1111 111 146899999999999999999987653
No 144
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.56 E-value=8.2e-14 Score=92.54 Aligned_cols=102 Identities=26% Similarity=0.317 Sum_probs=83.0
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
|||||+||..||+.+++++.++|+++|.+.+..+ .....+..+... ..+|+++.+||.|+.+ ....+.+..+
T Consensus 74 gtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~------~~ip~vVa~NK~DL~~-a~ppe~i~e~ 145 (187)
T COG2229 74 GTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSR------NPIPVVVAINKQDLFD-ALPPEKIREA 145 (187)
T ss_pred cCCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhc------cCCCEEEEeeccccCC-CCCHHHHHHH
Confidence 7999999999999999999999999999999988 445555555321 2399999999999976 4466777776
Q ss_pred HHHc-CCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891 81 YKEH-NFIGWTETSTKEGLMVNDSMKFLLDV 110 (142)
Q Consensus 81 ~~~~-~~~~~~~~Sa~~~~~i~~l~~~l~~~ 110 (142)
.... -..|++.++|..+.+..+.++.+...
T Consensus 146 l~~~~~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 146 LKLELLSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred HHhccCCCceeeeecccchhHHHHHHHHHhh
Confidence 6665 23679999999999999888887765
No 145
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.55 E-value=5.1e-14 Score=96.84 Aligned_cols=100 Identities=18% Similarity=0.141 Sum_probs=72.4
Q ss_pred CCCcc---------hhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCC
Q psy10891 1 MTEGQ---------ERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQ 71 (142)
Q Consensus 1 Dt~G~---------e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~ 71 (142)
||||+ +.|...+ ..+.++|++++|+|++++.++.....|...+... ...++|+++|+||+|+....
T Consensus 95 Dt~G~~~~~~~~~~~~~~~~~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~----~~~~~~viiV~NK~Dl~~~~ 169 (204)
T cd01878 95 DTVGFIRDLPHQLVEAFRSTL-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKEL----GAEDIPMILVLNKIDLLDDE 169 (204)
T ss_pred CCCccccCCCHHHHHHHHHHH-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHc----CcCCCCEEEEEEccccCChH
Confidence 89997 3333333 2466899999999999988888777777666421 22468999999999986521
Q ss_pred CCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891 72 VDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDV 110 (142)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 110 (142)
....++.... .+++++||+++.|+.+++++|...
T Consensus 170 ----~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 170 ----ELEERLEAGR-PDAVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred ----HHHHHhhcCC-CceEEEEcCCCCCHHHHHHHHHhh
Confidence 1113333333 569999999999999999998765
No 146
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.55 E-value=4.3e-14 Score=97.37 Aligned_cols=101 Identities=11% Similarity=0.121 Sum_probs=70.5
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCCh----hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC---C
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQ----NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV---D 73 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~ 73 (142)
||||+++|...+...+..+|++++|+|++++ .++..+..| ... ...|+++|+||+|+..... .
T Consensus 89 DtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~-~~~---------~~~~iiivvNK~Dl~~~~~~~~~ 158 (203)
T cd01888 89 DCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL-EIM---------GLKHIIIVQNKIDLVKEEQALEN 158 (203)
T ss_pred ECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH-HHc---------CCCcEEEEEEchhccCHHHHHHH
Confidence 8999999988888888899999999999874 233322222 111 2347999999999864111 1
Q ss_pred HHHHHHHHHHc--CCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 74 INDIECFYKEH--NFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 74 ~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
.+.+..++..+ ...+++++||+++.|++++|+.|...+
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 12333333332 124689999999999999999998755
No 147
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.55 E-value=8.2e-14 Score=109.32 Aligned_cols=105 Identities=12% Similarity=0.155 Sum_probs=81.7
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|...+..+++.+|++|+|+|+++..+......|..... .++|+|+|+||+|+.... .......+
T Consensus 80 DTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~--------~~lpiIvViNKiDl~~a~-~~~v~~ei 150 (600)
T PRK05433 80 DTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE--------NDLEIIPVLNKIDLPAAD-PERVKQEI 150 (600)
T ss_pred ECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--------CCCCEEEEEECCCCCccc-HHHHHHHH
Confidence 899999999999999999999999999998766666666654442 478999999999985421 22223444
Q ss_pred HHHcCCc--eEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 81 YKEHNFI--GWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 81 ~~~~~~~--~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
...+++. .++.+||++|.|+.++++.|...+...
T Consensus 151 ~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 151 EDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred HHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence 4545532 389999999999999999999887554
No 148
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.54 E-value=4.1e-14 Score=96.30 Aligned_cols=104 Identities=20% Similarity=0.169 Sum_probs=74.5
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC---CCCCHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---RQVDINDI 77 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---~~~~~~~~ 77 (142)
||||+.+|...+...+..+|++|+|+|+.+.......+.| ..+.. .++|+|+|+||+|+.. .....+..
T Consensus 76 DtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l-~~~~~-------~~~p~ivvlNK~D~~~~~~~~~~~~~~ 147 (188)
T PF00009_consen 76 DTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHL-KILRE-------LGIPIIVVLNKMDLIEKELEEIIEEIK 147 (188)
T ss_dssp EESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHH-HHHHH-------TT-SEEEEEETCTSSHHHHHHHHHHHH
T ss_pred ccccccceeecccceecccccceeeeeccccccccccccc-ccccc-------cccceEEeeeeccchhhhHHHHHHHHH
Confidence 8999999999998899999999999999976554443333 22221 4789999999999863 11111111
Q ss_pred HHHHHHcC-----CceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 78 ECFYKEHN-----FIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 78 ~~~~~~~~-----~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
..+.+..+ ..|++++||.+|.|+.+|++.|..++.
T Consensus 148 ~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 148 EKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred HHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 13334443 357999999999999999999988763
No 149
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.54 E-value=6.8e-14 Score=107.34 Aligned_cols=107 Identities=18% Similarity=0.112 Sum_probs=75.6
Q ss_pred CCCcc----------hhhhhhh-HhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 1 MTEGQ----------ERFTWMT-RVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 1 Dt~G~----------e~~~~~~-~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
||||+ +.|..+. ..+++++|++++|+|++++.++.... ++..+. ..++|+|+|+||+|+..
T Consensus 265 DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~-------~~~~piIiV~NK~Dl~~ 336 (472)
T PRK03003 265 DTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQR-VLSMVI-------EAGRALVLAFNKWDLVD 336 (472)
T ss_pred ECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHH-------HcCCCEEEEEECcccCC
Confidence 89994 5565554 34678999999999999988888764 444442 14789999999999964
Q ss_pred CCC---CHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 70 RQV---DINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 70 ~~~---~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
... ....+..........+++++||++|.|++++|..+...+....
T Consensus 337 ~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~ 385 (472)
T PRK03003 337 EDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALESWD 385 (472)
T ss_pred hhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 111 1111222222233467999999999999999999988775443
No 150
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.54 E-value=2.8e-13 Score=87.32 Aligned_cols=105 Identities=33% Similarity=0.513 Sum_probs=79.2
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHH-HH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDI-EC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~-~~ 79 (142)
||||+..+...+..++..+|++++|+|++++.++.....|..... ......++|+++|+||+|+.......... ..
T Consensus 51 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~ 127 (157)
T cd00882 51 DTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLIL---INKEGENIPIILVGNKIDLPEERVVSEEELAE 127 (157)
T ss_pred ecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHH---HhhccCCCcEEEEEeccccccccchHHHHHHH
Confidence 899999999988999999999999999999999888877732222 12234689999999999986522222221 22
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLL 108 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 108 (142)
........+++++|+..+.|+.+++.+|.
T Consensus 128 ~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 128 QLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred HHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 33333346799999999999999999875
No 151
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.54 E-value=7.1e-14 Score=95.52 Aligned_cols=91 Identities=16% Similarity=0.163 Sum_probs=65.0
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCC--CCHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQ--VDINDIE 78 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~--~~~~~~~ 78 (142)
||||+++|..++..+++++|++++|||+++.. +.....|+..+. ..++|+++|+||+|+.... ...+.+.
T Consensus 71 DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~-------~~~~p~iiv~NK~Dl~~~~~~~~~~~~~ 142 (194)
T cd01891 71 DTPGHADFGGEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKAL-------ELGLKPIVVINKIDRPDARPEEVVDEVF 142 (194)
T ss_pred ECCCcHHHHHHHHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHH-------HcCCCEEEEEECCCCCCCCHHHHHHHHH
Confidence 89999999999999999999999999998742 223334444432 1478999999999986421 1223334
Q ss_pred HHHHHc-------CCceEEEeeccCCCCH
Q psy10891 79 CFYKEH-------NFIGWTETSTKEGLMV 100 (142)
Q Consensus 79 ~~~~~~-------~~~~~~~~Sa~~~~~i 100 (142)
.++... + .+++++||++|.|+
T Consensus 143 ~~~~~~~~~~~~~~-~~iv~~Sa~~g~~~ 170 (194)
T cd01891 143 DLFIELGATEEQLD-FPVLYASAKNGWAS 170 (194)
T ss_pred HHHHHhCCccccCc-cCEEEeehhccccc
Confidence 444322 3 46899999999765
No 152
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.54 E-value=1.8e-13 Score=92.39 Aligned_cols=103 Identities=16% Similarity=0.159 Sum_probs=76.3
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC---CHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV---DINDI 77 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~~ 77 (142)
||||+..|...+..+++.+|++++|+|++++.+.... .++..+.. .+.|+++|+||+|+..... ..+.+
T Consensus 68 DtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~-------~~~~i~iv~nK~D~~~~~~~~~~~~~~ 139 (189)
T cd00881 68 DTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTR-EHLRIARE-------GGLPIIVAINKIDRVGEEDLEEVLREI 139 (189)
T ss_pred eCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHH-HHHHHHHH-------CCCCeEEEEECCCCcchhcHHHHHHHH
Confidence 8999999999999999999999999999887654432 34444321 4799999999999864111 12223
Q ss_pred HHHHHHc-------------CCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 78 ECFYKEH-------------NFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 78 ~~~~~~~-------------~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
....... ...+++++||+++.|+.+++.++...+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 140 KELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred HHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 3333332 235689999999999999999998875
No 153
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.53 E-value=1.3e-13 Score=101.35 Aligned_cols=108 Identities=11% Similarity=0.084 Sum_probs=77.5
Q ss_pred CCCcchh----hhhhhHhh---hccCCEEEEEEeCCCh---hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC
Q psy10891 1 MTEGQER----FTWMTRVY---YKDAHGCIIMFDLTNQ---NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR 70 (142)
Q Consensus 1 Dt~G~e~----~~~~~~~~---~~~ad~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 70 (142)
||||+.. ...+...+ +.+++++++|+|+++. .+++.+..|..++..+. ......|+++|+||+|+...
T Consensus 211 D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~--~~l~~kp~IIV~NK~DL~~~ 288 (329)
T TIGR02729 211 DIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYS--PELAEKPRIVVLNKIDLLDE 288 (329)
T ss_pred eCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhh--hhhccCCEEEEEeCccCCCh
Confidence 8999743 22344444 4579999999999976 67778888887775332 11247899999999998653
Q ss_pred CCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 71 QVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
....+..+.+.+..+ .+++++||+++.|+++++.+|...+
T Consensus 289 ~~~~~~~~~l~~~~~-~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 289 EELAELLKELKKALG-KPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred HHHHHHHHHHHHHcC-CcEEEEEccCCcCHHHHHHHHHHHh
Confidence 222334444555556 4699999999999999999998754
No 154
>KOG0076|consensus
Probab=99.52 E-value=3.5e-14 Score=93.44 Aligned_cols=110 Identities=23% Similarity=0.303 Sum_probs=86.7
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
|..||+..+++|..||..++++|+++|+++++-|+....-++.+. ......++|+++.+||.|+.+ ....+++...
T Consensus 75 dlgGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~---~~E~leg~p~L~lankqd~q~-~~~~~El~~~ 150 (197)
T KOG0076|consen 75 DLGGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVV---ENEKLEGAPVLVLANKQDLQN-AMEAAELDGV 150 (197)
T ss_pred EcCChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHH---HHHHhcCCchhhhcchhhhhh-hhhHHHHHHH
Confidence 678999999999999999999999999999888877665555554 333457999999999999976 2233344333
Q ss_pred HH---HcC--CceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 81 YK---EHN--FIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 81 ~~---~~~--~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
.. ..+ -.++..|||.+|+||++-..|++..+.++
T Consensus 151 ~~~~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 151 FGLAELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhhhhcCCccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 33 211 24688999999999999999999998776
No 155
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.52 E-value=4e-13 Score=93.15 Aligned_cols=111 Identities=30% Similarity=0.345 Sum_probs=85.0
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCC-hhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCC--------
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTN-QNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQ-------- 71 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-------- 71 (142)
||+||++|+.+++.|+.+++++++|||.++ ..+++....|...+.... ....|+++|+||+|+....
T Consensus 60 Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~----~~~~~iilv~nK~Dl~~~~~~~~~~~~ 135 (219)
T COG1100 60 DTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELA----PDDVPILLVGNKIDLFDEQSSSEEILN 135 (219)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhC----CCCceEEEEecccccccchhHHHHHHh
Confidence 899999999999999999999999999999 556677889998885332 2479999999999997621
Q ss_pred -----CCHHHHHHHHHHc--CCceEEEeecc--CCCCHHHHHHHHHHHHHHHh
Q psy10891 72 -----VDINDIECFYKEH--NFIGWTETSTK--EGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 72 -----~~~~~~~~~~~~~--~~~~~~~~Sa~--~~~~i~~l~~~l~~~~~~~~ 115 (142)
............. ....++++|++ .+.++.++|..+...+.+..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~~~ 188 (219)
T COG1100 136 QLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRKLLEEI 188 (219)
T ss_pred hhhcCcchhhhHhHHhhhhhcccceeEeecccCCCcCHHHHHHHHHHHHHHhh
Confidence 1122222222222 11238999999 99999999999999987643
No 156
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.51 E-value=1.9e-13 Score=106.96 Aligned_cols=99 Identities=16% Similarity=0.168 Sum_probs=72.3
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
|||||++|..++..++..+|++++|+|+++...-...+.| ... ...++|+++++||+|+.. ...+.....
T Consensus 141 DTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i-~~~-------~~~~vPiIVviNKiDl~~--~~~e~v~~~ 210 (587)
T TIGR00487 141 DTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAI-SHA-------KAANVPIIVAINKIDKPE--ANPDRVKQE 210 (587)
T ss_pred ECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHH-HHH-------HHcCCCEEEEEECccccc--CCHHHHHHH
Confidence 8999999999999999999999999999874322222222 122 114799999999999854 233344444
Q ss_pred HHHcCC--------ceEEEeeccCCCCHHHHHHHHHH
Q psy10891 81 YKEHNF--------IGWTETSTKEGLMVNDSMKFLLD 109 (142)
Q Consensus 81 ~~~~~~--------~~~~~~Sa~~~~~i~~l~~~l~~ 109 (142)
+...++ .+++++||++|.|+.++|+++..
T Consensus 211 L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 211 LSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred HHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence 333331 36899999999999999999874
No 157
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.51 E-value=1.3e-13 Score=104.52 Aligned_cols=106 Identities=15% Similarity=0.094 Sum_probs=72.8
Q ss_pred CCCcchhhhhhh-----------HhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 1 MTEGQERFTWMT-----------RVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 1 Dt~G~e~~~~~~-----------~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
||||+.++..+. ..+++.+|++++|+|++++.+..... ++..+. ..++|+|+|+||+|+..
T Consensus 226 DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~-------~~~~~iiiv~NK~Dl~~ 297 (429)
T TIGR03594 226 DTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLR-IAGLIL-------EAGKALVIVVNKWDLVK 297 (429)
T ss_pred ECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHH-------HcCCcEEEEEECcccCC
Confidence 899975544321 34678999999999999987776643 333332 14689999999999862
Q ss_pred CCCCHHHH-HHHHHH---cCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 70 RQVDINDI-ECFYKE---HNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 70 ~~~~~~~~-~~~~~~---~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
.....+.. ..+... .+..+++++||++|.|+.++|.++...+...
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~~ 346 (429)
T TIGR03594 298 DEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYENA 346 (429)
T ss_pred CHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 11111122 122222 2346799999999999999999998876543
No 158
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.51 E-value=1.6e-13 Score=98.45 Aligned_cols=103 Identities=16% Similarity=-0.005 Sum_probs=73.7
Q ss_pred CCCcchhhh--------hhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC
Q psy10891 1 MTEGQERFT--------WMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV 72 (142)
Q Consensus 1 Dt~G~e~~~--------~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~ 72 (142)
||||+.... .....++.++|++++|+|+++..+.. ..++..+.. .+.|+++|+||+|+.....
T Consensus 54 DTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l~~-------~~~p~ilV~NK~Dl~~~~~ 124 (270)
T TIGR00436 54 DTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG--EFVLTKLQN-------LKRPVVLTRNKLDNKFKDK 124 (270)
T ss_pred ECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH--HHHHHHHHh-------cCCCEEEEEECeeCCCHHH
Confidence 899975321 12345678999999999999876664 344444421 3689999999999864222
Q ss_pred CHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 73 DINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
..+....++...++.+++++||++|.|++++++.+...+.
T Consensus 125 ~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~ 164 (270)
T TIGR00436 125 LLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLP 164 (270)
T ss_pred HHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCC
Confidence 2334444555555557999999999999999999988763
No 159
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.50 E-value=2.6e-13 Score=108.01 Aligned_cols=101 Identities=14% Similarity=0.140 Sum_probs=73.3
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||++.|..++..++..+|++|+|+|+++.......+.|. .+. ..++|+|+++||+|+... ..+.+...
T Consensus 301 DTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~-~~k-------~~~iPiIVViNKiDl~~~--~~e~v~~e 370 (742)
T CHL00189 301 DTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAIN-YIQ-------AANVPIIVAINKIDKANA--NTERIKQQ 370 (742)
T ss_pred ECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHH-HHH-------hcCceEEEEEECCCcccc--CHHHHHHH
Confidence 89999999999999999999999999998753322222221 221 147899999999998642 22222222
Q ss_pred H-------HHcC-CceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 81 Y-------KEHN-FIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 81 ~-------~~~~-~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
+ ..++ ..+++++||++|.|+.++|..|....
T Consensus 371 L~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 371 LAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred HHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 2 2222 35799999999999999999988764
No 160
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.49 E-value=4.2e-13 Score=91.58 Aligned_cols=105 Identities=12% Similarity=-0.039 Sum_probs=69.4
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCC---CCHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQ---VDINDI 77 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~---~~~~~~ 77 (142)
||||+..+....-.....+|++++|+|+++..+....+.|.... . .+.|+++|+||+|+.... ...+.+
T Consensus 74 DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~--~------~~~~~iiv~NK~Dl~~~~~~~~~~~~~ 145 (192)
T cd01889 74 DCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGE--I------LCKKLIVVLNKIDLIPEEERERKIEKM 145 (192)
T ss_pred ECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHH--H------cCCCEEEEEECcccCCHHHHHHHHHHH
Confidence 89999776544434456789999999998865444433332111 1 267999999999986411 112222
Q ss_pred HHHHH-H-----cCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 78 ECFYK-E-----HNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 78 ~~~~~-~-----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
..... . ....+++++||+++.|++++++.+..+++-
T Consensus 146 ~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 146 KKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred HHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 22111 1 122569999999999999999999988753
No 161
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.49 E-value=2.5e-13 Score=89.05 Aligned_cols=99 Identities=19% Similarity=0.186 Sum_probs=69.7
Q ss_pred CCCcchhhhh--------hhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC
Q psy10891 1 MTEGQERFTW--------MTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV 72 (142)
Q Consensus 1 Dt~G~e~~~~--------~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~ 72 (142)
||||+..+.. .+..+++++|++++|+|..+..+.... .+...+. . .+.|+++|+||+|+....
T Consensus 51 DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~-~------~~~piiiv~nK~D~~~~~- 121 (157)
T cd01894 51 DTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADE-EIAKYLR-K------SKKPVILVVNKVDNIKEE- 121 (157)
T ss_pred ECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHH-HHHHHHH-h------cCCCEEEEEECcccCChH-
Confidence 8999888554 345677899999999999876544432 2222221 1 258999999999986521
Q ss_pred CHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 73 DINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
.. .......+..+++++|++++.|++++|++++.++
T Consensus 122 --~~-~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (157)
T cd01894 122 --DE-AAEFYSLGFGEPIPISAEHGRGIGDLLDAILELL 157 (157)
T ss_pred --HH-HHHHHhcCCCCeEEEecccCCCHHHHHHHHHhhC
Confidence 11 2233445544689999999999999999998753
No 162
>KOG0096|consensus
Probab=99.49 E-value=2.3e-14 Score=95.54 Aligned_cols=107 Identities=29% Similarity=0.468 Sum_probs=89.5
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||+|||+|..+..-||-.+.++|++||++...++..+.+|...+.+.+ .++||+++|||.|...+.+....+ .+
T Consensus 65 dtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~-----~NiPiv~cGNKvDi~~r~~k~k~v-~~ 138 (216)
T KOG0096|consen 65 DTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR-----ENIPIVLCGNKVDIKARKVKAKPV-SF 138 (216)
T ss_pred ecccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHh-----cCCCeeeeccceeccccccccccc-ee
Confidence 899999999999999999999999999999999999999999998777 789999999999986643222222 22
Q ss_pred HHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 81 YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
-+... +.++++||+++.|.+.-|.++.+.+...
T Consensus 139 ~rkkn-l~y~~iSaksn~NfekPFl~LarKl~G~ 171 (216)
T KOG0096|consen 139 HRKKN-LQYYEISAKSNYNFERPFLWLARKLTGD 171 (216)
T ss_pred eeccc-ceeEEeecccccccccchHHHhhhhcCC
Confidence 33333 5699999999999999999999888654
No 163
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.48 E-value=4.6e-13 Score=99.20 Aligned_cols=99 Identities=19% Similarity=0.150 Sum_probs=71.3
Q ss_pred CCCcc---------hhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCC
Q psy10891 1 MTEGQ---------ERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQ 71 (142)
Q Consensus 1 Dt~G~---------e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~ 71 (142)
||||. +.|..++. .+.+||++++|+|++++.++.....|...+... ...+.|+++|+||+|+...
T Consensus 243 DT~G~~~~l~~~lie~f~~tle-~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l----~~~~~piIlV~NK~Dl~~~- 316 (351)
T TIGR03156 243 DTVGFIRDLPHELVAAFRATLE-EVREADLLLHVVDASDPDREEQIEAVEKVLEEL----GAEDIPQLLVYNKIDLLDE- 316 (351)
T ss_pred ecCcccccCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh----ccCCCCEEEEEEeecCCCh-
Confidence 89997 44555444 578999999999999998887776665555321 2247899999999998541
Q ss_pred CCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891 72 VDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDV 110 (142)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 110 (142)
.....+. . +..+++++||+++.|+++++..|...
T Consensus 317 ---~~v~~~~-~-~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 317 ---PRIERLE-E-GYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred ---HhHHHHH-h-CCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 1222221 1 22358999999999999999998764
No 164
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.48 E-value=5.6e-13 Score=86.78 Aligned_cols=103 Identities=22% Similarity=0.357 Sum_probs=80.4
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCCh-hhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQ-NSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIE 78 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~ 78 (142)
||||++++..++..++..++.++.++|+... .++.... .|...+.+.. . .+.|+++++||+|+.... ......
T Consensus 56 D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~---~-~~~p~ivv~nK~D~~~~~-~~~~~~ 130 (161)
T TIGR00231 56 DTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHA---E-SNVPIILVGNKIDLRDAK-LKTHVA 130 (161)
T ss_pred ECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhc---c-cCCcEEEEEEcccCCcch-hhHHHH
Confidence 8999999999999999999999999999887 6666654 6776665433 2 278999999999986532 233334
Q ss_pred HHHHHcCCceEEEeeccCCCCHHHHHHHHH
Q psy10891 79 CFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108 (142)
Q Consensus 79 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 108 (142)
......+..+++++||.++.|+.++|+.|.
T Consensus 131 ~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 131 FLFAKLNGEPIIPLSAETGKNIDSAFKIVE 160 (161)
T ss_pred HHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence 444555556799999999999999998863
No 165
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.48 E-value=2.9e-13 Score=90.44 Aligned_cols=106 Identities=11% Similarity=0.103 Sum_probs=72.4
Q ss_pred CCCcchh----hhhhh---HhhhccCCEEEEEEeCCCh------hhHHHHHHHHHHHHHhcccCC------CCCCCEEEE
Q psy10891 1 MTEGQER----FTWMT---RVYYKDAHGCIIMFDLTNQ------NSFKNTLKWKKDVDLKCTLSD------GSPIPCMLL 61 (142)
Q Consensus 1 Dt~G~e~----~~~~~---~~~~~~ad~ii~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~------~~~~p~ilv 61 (142)
||||+.. +..++ ..++.++|++++|+|++++ .++.....|...+.... . ..+.|+++|
T Consensus 50 DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~p~ivv 126 (176)
T cd01881 50 DIPGLIEGASEGRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYD---LETILGLLTAKPVIYV 126 (176)
T ss_pred eccccchhhhcCCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhh---hhhHHHHHhhCCeEEE
Confidence 8999733 22232 3456789999999999988 57777777777764221 1 147899999
Q ss_pred EeCCCCCC-CCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDV 110 (142)
Q Consensus 62 ~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 110 (142)
+||+|+.. ...............+ .+++++||+++.|++++++++...
T Consensus 127 ~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 127 LNKIDLDDAEELEEELVRELALEEG-AEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred EEchhcCchhHHHHHHHHHHhcCCC-CCEEEEehhhhcCHHHHHHHHHhh
Confidence 99999865 2111111112222233 459999999999999999998764
No 166
>PRK04213 GTP-binding protein; Provisional
Probab=99.47 E-value=7e-13 Score=90.92 Aligned_cols=103 Identities=14% Similarity=0.078 Sum_probs=70.4
Q ss_pred CCCc-----------chhhhhhhHhhhc----cCCEEEEEEeCCChhhHHH----------HHHHHHHHHHhcccCCCCC
Q psy10891 1 MTEG-----------QERFTWMTRVYYK----DAHGCIIMFDLTNQNSFKN----------TLKWKKDVDLKCTLSDGSP 55 (142)
Q Consensus 1 Dt~G-----------~e~~~~~~~~~~~----~ad~ii~v~d~~~~~s~~~----------~~~~~~~~~~~~~~~~~~~ 55 (142)
|||| +++|..++..|+. .++++++|+|.+....+.. ...++..+. ..+
T Consensus 58 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~ 130 (201)
T PRK04213 58 DLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR-------ELG 130 (201)
T ss_pred eCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH-------HcC
Confidence 8999 7899988888775 3578888888764322100 011122221 147
Q ss_pred CCEEEEEeCCCCCCCCCCHHHHHHHHHHcCC--------ceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 56 IPCMLLANKCDLPHRQVDINDIECFYKEHNF--------IGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 56 ~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
+|+++|+||+|+.... .+....++..++. .+++++||++| |++++|.+|...+..
T Consensus 131 ~p~iiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 131 IPPIVAVNKMDKIKNR--DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred CCeEEEEECccccCcH--HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 9999999999985422 3445566666663 14799999999 999999999987643
No 167
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.46 E-value=5.5e-13 Score=104.47 Aligned_cols=102 Identities=15% Similarity=0.072 Sum_probs=76.7
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCC---hhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCCCC---CC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTN---QNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPHRQ---VD 73 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~---~~ 73 (142)
||||+++|...+..++.++|++++|+|+++ +.+++.+. ++.. .++| +|+|+||+|+.+.. ..
T Consensus 56 DtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~-il~~----------lgi~~iIVVlNK~Dlv~~~~~~~~ 124 (581)
T TIGR00475 56 DVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLA-VLDL----------LGIPHTIVVITKADRVNEEEIKRT 124 (581)
T ss_pred ECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHH-HHHH----------cCCCeEEEEEECCCCCCHHHHHHH
Confidence 899999999999999999999999999998 44544432 2211 2677 99999999986511 12
Q ss_pred HHHHHHHHHHcC---CceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 74 INDIECFYKEHN---FIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 74 ~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
.+.+..++...+ ..+++++||++|.|+++++..+...+-.
T Consensus 125 ~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 125 EMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred HHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHh
Confidence 334555555543 2579999999999999999988776644
No 168
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.46 E-value=6.6e-13 Score=106.45 Aligned_cols=100 Identities=16% Similarity=0.147 Sum_probs=71.6
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHH-
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIEC- 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~- 79 (142)
||||++.|..++..++..+|++|+|||+++...-.....|. .. ...++|+|+++||+|+... ..+....
T Consensus 343 DTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~-~a-------~~~~vPiIVviNKiDl~~a--~~e~V~~e 412 (787)
T PRK05306 343 DTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAIN-HA-------KAAGVPIIVAINKIDKPGA--NPDRVKQE 412 (787)
T ss_pred ECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHH-HH-------HhcCCcEEEEEECcccccc--CHHHHHHH
Confidence 89999999999999999999999999998843222222231 11 1247999999999998541 1222221
Q ss_pred ------HHHHcC-CceEEEeeccCCCCHHHHHHHHHHH
Q psy10891 80 ------FYKEHN-FIGWTETSTKEGLMVNDSMKFLLDV 110 (142)
Q Consensus 80 ------~~~~~~-~~~~~~~Sa~~~~~i~~l~~~l~~~ 110 (142)
++..++ ..+++++||++|.|+.++|+.|...
T Consensus 413 L~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 413 LSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred HHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhhh
Confidence 122232 2569999999999999999998764
No 169
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.45 E-value=6.7e-13 Score=101.93 Aligned_cols=101 Identities=20% Similarity=0.148 Sum_probs=73.6
Q ss_pred CCCcch--------hhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC
Q psy10891 1 MTEGQE--------RFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV 72 (142)
Q Consensus 1 Dt~G~e--------~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~ 72 (142)
||||++ .+...+..+++++|++|||+|+++..++.. ..|...+.. .++|+++|+||+|+...
T Consensus 92 DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~-------~~~piilV~NK~Dl~~~-- 161 (472)
T PRK03003 92 DTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATD-EAVARVLRR-------SGKPVILAANKVDDERG-- 161 (472)
T ss_pred eCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH-------cCCCEEEEEECccCCcc--
Confidence 899976 355567778999999999999998766554 344444431 47999999999998542
Q ss_pred CHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 73 DINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
..+....+ ..++..+++|||++|.|++++|++++..+.+
T Consensus 162 ~~~~~~~~--~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 162 EADAAALW--SLGLGEPHPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred chhhHHHH--hcCCCCeEEEEcCCCCCcHHHHHHHHhhccc
Confidence 11222222 3344346799999999999999999988855
No 170
>KOG0071|consensus
Probab=99.45 E-value=9e-13 Score=84.13 Aligned_cols=107 Identities=18% Similarity=0.260 Sum_probs=82.9
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
|++||++.+.+|+.||.++.++|||+|..+....+..++-+-.+ ++.....+.|+++.+||.|+.. .....++..+
T Consensus 67 dvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~i---i~~~em~~~~~LvlANkQDlp~-A~~pqei~d~ 142 (180)
T KOG0071|consen 67 DVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRI---INDREMRDAIILILANKQDLPD-AMKPQEIQDK 142 (180)
T ss_pred eccCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHH---hCCHhhhcceEEEEecCccccc-ccCHHHHHHH
Confidence 78999999999999999999999999998876666555433333 3555667999999999999976 3456666666
Q ss_pred HHHcCC--ce--EEEeeccCCCCHHHHHHHHHHHH
Q psy10891 81 YKEHNF--IG--WTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 81 ~~~~~~--~~--~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
...... .+ +..+||.++.|+.+-|.++...+
T Consensus 143 leLe~~r~~~W~vqp~~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 143 LELERIRDRNWYVQPSCALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred hccccccCCccEeeccccccchhHHHHHHHHHhhc
Confidence 543221 11 66899999999999999998654
No 171
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.44 E-value=1.5e-12 Score=101.84 Aligned_cols=100 Identities=17% Similarity=0.134 Sum_probs=70.4
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCC---hhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC--CC-C--
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTN---QNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH--RQ-V-- 72 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~--~~-~-- 72 (142)
|||||+.|..++..+++.+|++++|+|+++ +.++..+.. +. ..++|+++++||+|+.. .. .
T Consensus 75 DTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~----l~-------~~~vpiIVv~NK~Dl~~~~~~~~~~ 143 (590)
T TIGR00491 75 DTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNI----LR-------MYKTPFVVAANKIDRIPGWRSHEGR 143 (590)
T ss_pred ECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHH----HH-------HcCCCEEEEEECCCccchhhhccCc
Confidence 899999999999999999999999999987 445444321 21 13789999999999853 00 0
Q ss_pred --------CHHH------------HHHHHH------------Hc-CCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 73 --------DIND------------IECFYK------------EH-NFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 73 --------~~~~------------~~~~~~------------~~-~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
.... ...+.. .+ +..+++.+||++|+|+++++.++....
T Consensus 144 ~f~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 144 PFMESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 0000 001110 11 235789999999999999999886543
No 172
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.42 E-value=3.9e-12 Score=96.08 Aligned_cols=108 Identities=16% Similarity=0.182 Sum_probs=79.3
Q ss_pred CCCcchh----hhhhhHhhh---ccCCEEEEEEeCCCh---hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC
Q psy10891 1 MTEGQER----FTWMTRVYY---KDAHGCIIMFDLTNQ---NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR 70 (142)
Q Consensus 1 Dt~G~e~----~~~~~~~~~---~~ad~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 70 (142)
||||... ...+...|+ .+++++++|+|+++. .+++....|..++..+. ....++|+++|+||+|+..
T Consensus 212 D~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~--~~L~~kP~IVV~NK~DL~~- 288 (424)
T PRK12297 212 DIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYN--PRLLERPQIVVANKMDLPE- 288 (424)
T ss_pred ECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhc--hhccCCcEEEEEeCCCCcC-
Confidence 8898632 223444454 469999999999864 56777778888876332 1124789999999999843
Q ss_pred CCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 71 QVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
..+.+..+++.++ .+++.+||+++.|+++++.+|...+.+.
T Consensus 289 --~~e~l~~l~~~l~-~~i~~iSA~tgeGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 289 --AEENLEEFKEKLG-PKVFPISALTGQGLDELLYAVAELLEET 329 (424)
T ss_pred --CHHHHHHHHHHhC-CcEEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence 2345566677766 5699999999999999999999887654
No 173
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.42 E-value=2.2e-12 Score=98.12 Aligned_cols=99 Identities=20% Similarity=0.199 Sum_probs=75.0
Q ss_pred CCCcchhhhhh--------hHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC
Q psy10891 1 MTEGQERFTWM--------TRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV 72 (142)
Q Consensus 1 Dt~G~e~~~~~--------~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~ 72 (142)
||||+..+... ...+++++|++++|||++++.++... |+..+. ..++|+++|+||+|+...
T Consensus 257 DTaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~-------~~~~piIlV~NK~Dl~~~-- 325 (442)
T TIGR00450 257 DTAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLN-------KSKKPFILVLNKIDLKIN-- 325 (442)
T ss_pred eCCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHh-------hCCCCEEEEEECccCCCc--
Confidence 89998665432 24678899999999999998887764 766552 146899999999998542
Q ss_pred CHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 73 DINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
....+++..+ .+++.+||++ .||.++|+.+...+.+..
T Consensus 326 ---~~~~~~~~~~-~~~~~vSak~-~gI~~~~~~L~~~i~~~~ 363 (442)
T TIGR00450 326 ---SLEFFVSSKV-LNSSNLSAKQ-LKIKALVDLLTQKINAFY 363 (442)
T ss_pred ---chhhhhhhcC-CceEEEEEec-CCHHHHHHHHHHHHHHHh
Confidence 1233455555 4589999998 699999999999887654
No 174
>PRK11058 GTPase HflX; Provisional
Probab=99.42 E-value=3e-12 Score=96.95 Aligned_cols=105 Identities=19% Similarity=0.079 Sum_probs=71.1
Q ss_pred CCCcchhh--hhhh------HhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC
Q psy10891 1 MTEGQERF--TWMT------RVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV 72 (142)
Q Consensus 1 Dt~G~e~~--~~~~------~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~ 72 (142)
||||..+. ..++ ...+.+||++++|+|++++.++..+..|...+... ...++|+++|+||+|+....
T Consensus 251 DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el----~~~~~pvIiV~NKiDL~~~~- 325 (426)
T PRK11058 251 DTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEI----DAHEIPTLLVMNKIDMLDDF- 325 (426)
T ss_pred ecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHh----ccCCCCEEEEEEcccCCCch-
Confidence 89998442 2222 23468999999999999988777765444433211 22478999999999986421
Q ss_pred CHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 73 DINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
..... ....+...++++||++|.|+++++++|...+..
T Consensus 326 -~~~~~--~~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 326 -EPRID--RDEENKPIRVWLSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred -hHHHH--HHhcCCCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 11111 112342225889999999999999999998854
No 175
>KOG1673|consensus
Probab=99.41 E-value=1.4e-12 Score=84.60 Aligned_cols=107 Identities=24% Similarity=0.320 Sum_probs=85.0
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC--CC----CCH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH--RQ----VDI 74 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~--~~----~~~ 74 (142)
|..||+++..+.+..+.++-+++|+||++.+.++..+..|+.+.+ ......+| |+||+|.|+.- .. .-.
T Consensus 75 dlgG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr----~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~ 149 (205)
T KOG1673|consen 75 DLGGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQAR----GLNKTAIP-ILVGTKYDLFIDLPPELQETIS 149 (205)
T ss_pred ecCCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHh----ccCCccce-EEeccchHhhhcCCHHHHHHHH
Confidence 789999999999999999999999999999999999999999884 33334566 67899999643 11 112
Q ss_pred HHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 75 NDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
.....+++..+ .+.++||+..+-++..+|.-+...+++
T Consensus 150 ~qar~YAk~mn-AsL~F~Sts~sINv~KIFK~vlAklFn 187 (205)
T KOG1673|consen 150 RQARKYAKVMN-ASLFFCSTSHSINVQKIFKIVLAKLFN 187 (205)
T ss_pred HHHHHHHHHhC-CcEEEeeccccccHHHHHHHHHHHHhC
Confidence 23445666777 458999999999999999888777765
No 176
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.40 E-value=4.4e-12 Score=88.67 Aligned_cols=100 Identities=13% Similarity=0.045 Sum_probs=66.6
Q ss_pred CCCcchhhhhhhHhhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYK--DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIE 78 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~--~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~ 78 (142)
||||+++|...+...+. .+|++++|+|++.+.+-.. ..++..+.. .++|+++|.||+|+.++........
T Consensus 90 DtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d-~~~l~~l~~-------~~ip~ivvvNK~D~~~~~~~~~~~~ 161 (224)
T cd04165 90 DLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT-KEHLGLALA-------LNIPVFVVVTKIDLAPANILQETLK 161 (224)
T ss_pred ECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH-HHHHHHHHH-------cCCCEEEEEECccccCHHHHHHHHH
Confidence 89999999876555553 6899999999987644333 233333321 3689999999999865221122222
Q ss_pred HHHHHcC----------------------------CceEEEeeccCCCCHHHHHHHHH
Q psy10891 79 CFYKEHN----------------------------FIGWTETSTKEGLMVNDSMKFLL 108 (142)
Q Consensus 79 ~~~~~~~----------------------------~~~~~~~Sa~~~~~i~~l~~~l~ 108 (142)
.+...+. ..|++.+|+.+|.|+++++..|.
T Consensus 162 ~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 162 DLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 2222211 24799999999999999887664
No 177
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.39 E-value=1.8e-12 Score=98.97 Aligned_cols=95 Identities=15% Similarity=0.170 Sum_probs=71.5
Q ss_pred CCCcchhhhhh--------hHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC
Q psy10891 1 MTEGQERFTWM--------TRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV 72 (142)
Q Consensus 1 Dt~G~e~~~~~--------~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~ 72 (142)
||||++.+... ...++.++|++++|+|++++.++.....|.. . .+.|+++|+||+|+.....
T Consensus 269 DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~-~---------~~~piiiV~NK~DL~~~~~ 338 (449)
T PRK05291 269 DTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE-L---------KDKPVIVVLNKADLTGEID 338 (449)
T ss_pred eCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh-c---------CCCCcEEEEEhhhccccch
Confidence 89998765432 2346889999999999999888776544433 1 4789999999999864211
Q ss_pred CHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 73 DINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
.. ...+ .+++++||++|.|+++++.+|...+..
T Consensus 339 -~~------~~~~-~~~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 339 -LE------EENG-KPVIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred -hh------hccC-CceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 11 2223 468999999999999999999998754
No 178
>PRK15494 era GTPase Era; Provisional
Probab=99.39 E-value=3.9e-12 Score=93.92 Aligned_cols=102 Identities=17% Similarity=0.158 Sum_probs=70.4
Q ss_pred CCCcch-hhhhhh-------HhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCC
Q psy10891 1 MTEGQE-RFTWMT-------RVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQ 71 (142)
Q Consensus 1 Dt~G~e-~~~~~~-------~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~ 71 (142)
||||+. .+..+. ..++.++|+++||+|..+. +.... .|+..+.. .+.|.|+|+||+|+...
T Consensus 106 DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~-------~~~p~IlViNKiDl~~~- 175 (339)
T PRK15494 106 DTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLKS--FDDITHNILDKLRS-------LNIVPIFLLNKIDIESK- 175 (339)
T ss_pred ECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCCC--CCHHHHHHHHHHHh-------cCCCEEEEEEhhcCccc-
Confidence 899984 333322 2346799999999998763 43433 45555531 24678899999998542
Q ss_pred CCHHHHHHHHHHcC-CceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 72 VDINDIECFYKEHN-FIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 72 ~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
....+..++.... ..+++++||++|.|++++|++|...+..
T Consensus 176 -~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 176 -YLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKI 217 (339)
T ss_pred -cHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCC
Confidence 2344555555443 3568999999999999999999887754
No 179
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.39 E-value=4.6e-12 Score=96.38 Aligned_cols=106 Identities=11% Similarity=0.028 Sum_probs=71.4
Q ss_pred CCCcch----------hhhhhh-HhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 1 MTEGQE----------RFTWMT-RVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 1 Dt~G~e----------~~~~~~-~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
||||.. .|..+. ..+++.+|++++|+|++++.+..+.. ++..+.. .+.|+++|+||+|+..
T Consensus 227 DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~-------~~~~~ivv~NK~Dl~~ 298 (435)
T PRK00093 227 DTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLR-IAGLALE-------AGRALVIVVNKWDLVD 298 (435)
T ss_pred ECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH-------cCCcEEEEEECccCCC
Confidence 899954 333222 34678999999999999987776643 3333321 4689999999999864
Q ss_pred CCCCHHHHHHH---HHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 70 RQVDINDIECF---YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 70 ~~~~~~~~~~~---~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
.....+....+ .......|++++||+++.|++++++.+.......
T Consensus 299 ~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~~~ 346 (435)
T PRK00093 299 EKTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYENA 346 (435)
T ss_pred HHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 11111111112 2223346799999999999999999988766543
No 180
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.38 E-value=7.5e-12 Score=93.86 Aligned_cols=112 Identities=13% Similarity=0.040 Sum_probs=77.8
Q ss_pred CCCcchhh-------hhhhHhhhccCCEEEEEEeCC---ChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC
Q psy10891 1 MTEGQERF-------TWMTRVYYKDAHGCIIMFDLT---NQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR 70 (142)
Q Consensus 1 Dt~G~e~~-------~~~~~~~~~~ad~ii~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 70 (142)
||||.-+- ....-.++.++|++++|+|++ ....+.....|+.++..+. ....+.|+|+|+||+|+...
T Consensus 213 DtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~--~~L~~kP~IlVlNKiDl~~~ 290 (390)
T PRK12298 213 DIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYS--PKLAEKPRWLVFNKIDLLDE 290 (390)
T ss_pred eCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhh--hhhcCCCEEEEEeCCccCCh
Confidence 89996431 111223578999999999998 4456677777887775332 01136899999999998653
Q ss_pred CCCHHHHHHHHHHcCC-ceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 71 QVDINDIECFYKEHNF-IGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 71 ~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
....+.+..+.+..+. .+++.+||+++.+++++++.|...+.+.
T Consensus 291 ~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 291 EEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhhC
Confidence 2223444455555443 2589999999999999999999988653
No 181
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.38 E-value=4.5e-12 Score=99.84 Aligned_cols=100 Identities=13% Similarity=0.104 Sum_probs=72.2
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCCh---hhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCCCC---CC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQ---NSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPHRQ---VD 73 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~---~~ 73 (142)
||||+++|...+...+.++|++++|+|+++. .+.+.+. ++.. .++| +|+|+||+|+.+.. ..
T Consensus 57 DtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~-il~~----------lgi~~iIVVlNKiDlv~~~~~~~v 125 (614)
T PRK10512 57 DVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLA-ILQL----------TGNPMLTVALTKADRVDEARIAEV 125 (614)
T ss_pred ECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHH-HHHH----------cCCCeEEEEEECCccCCHHHHHHH
Confidence 8999999988888889999999999999874 3433322 2221 2456 57999999986411 11
Q ss_pred HHHHHHHHHHcCC--ceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 74 INDIECFYKEHNF--IGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 74 ~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
.+++..++...++ .+++.+||++|.|++++++.|....
T Consensus 126 ~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~ 165 (614)
T PRK10512 126 RRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLP 165 (614)
T ss_pred HHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhh
Confidence 2344444544443 5799999999999999999998654
No 182
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.37 E-value=4.1e-12 Score=99.72 Aligned_cols=99 Identities=18% Similarity=0.155 Sum_probs=73.2
Q ss_pred CCCcchhhhhh------hHhhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CC
Q psy10891 1 MTEGQERFTWM------TRVYY--KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQ 71 (142)
Q Consensus 1 Dt~G~e~~~~~------~~~~~--~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~ 71 (142)
||||++++... .+.|+ .++|++++|+|.++.+. ...+..++. ..++|+++|+||+|+.+ +.
T Consensus 47 DtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~ler---~l~l~~ql~-------~~~~PiIIVlNK~Dl~~~~~ 116 (591)
T TIGR00437 47 DLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLER---NLYLTLQLL-------ELGIPMILALNLVDEAEKKG 116 (591)
T ss_pred ECCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcchh---hHHHHHHHH-------hcCCCEEEEEehhHHHHhCC
Confidence 89999988754 34444 37999999999987432 122333332 14789999999999865 33
Q ss_pred CCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 72 VDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
+. .+.+.+.+..+ .+++++||+++.|++++++.+.+..
T Consensus 117 i~-~d~~~L~~~lg-~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 117 IR-IDEEKLEERLG-VPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred Ch-hhHHHHHHHcC-CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 33 34567788888 5799999999999999999998754
No 183
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.37 E-value=4.3e-12 Score=95.82 Aligned_cols=105 Identities=10% Similarity=0.096 Sum_probs=71.2
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC---CHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQN-SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV---DIND 76 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~ 76 (142)
|||||++|...+...+..+|++++|+|++++. .... ...+..+.. . .-.|+++|+||+|+.+... ..+.
T Consensus 86 DtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt-~e~l~~l~~-~-----gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 86 DAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQT-KEHLMALEI-I-----GIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred ECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccch-HHHHHHHHH-c-----CCCeEEEEEEccccCCHHHHHHHHHH
Confidence 89999999998888888999999999999643 1111 112222211 1 2346899999999865111 1223
Q ss_pred HHHHHHHc--CCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 77 IECFYKEH--NFIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 77 ~~~~~~~~--~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
+..+.... ...+++++||+++.|++++++.|...+.
T Consensus 159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 33333332 1256999999999999999999987653
No 184
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.36 E-value=5.8e-12 Score=100.97 Aligned_cols=105 Identities=17% Similarity=0.129 Sum_probs=73.2
Q ss_pred CCCcc----------hhhhhhh-HhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 1 MTEGQ----------ERFTWMT-RVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 1 Dt~G~----------e~~~~~~-~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
||||+ +.|..+. ..+++.+|++++|+|+++..++.....| ..+.. .++|+|+|+||+|+.+
T Consensus 504 DTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~-~~~~~-------~~~piIiV~NK~DL~~ 575 (712)
T PRK09518 504 DTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVM-SMAVD-------AGRALVLVFNKWDLMD 575 (712)
T ss_pred ECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHH-HHHHH-------cCCCEEEEEEchhcCC
Confidence 89995 4444443 3457899999999999998888776533 33321 4789999999999864
Q ss_pred CCCCHHHHHH-HHHH---cCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 70 RQVDINDIEC-FYKE---HNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 70 ~~~~~~~~~~-~~~~---~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
.. ..+.... +... ..+.+++++||++|.|++++|..+.+.+...
T Consensus 576 ~~-~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~~ 623 (712)
T PRK09518 576 EF-RRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALESW 623 (712)
T ss_pred hh-HHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 11 1122222 2222 2335678999999999999999998887654
No 185
>PRK00089 era GTPase Era; Reviewed
Probab=99.35 E-value=7.6e-12 Score=90.59 Aligned_cols=104 Identities=16% Similarity=0.126 Sum_probs=73.1
Q ss_pred CCCcchhh--------hhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CC
Q psy10891 1 MTEGQERF--------TWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQ 71 (142)
Q Consensus 1 Dt~G~e~~--------~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~ 71 (142)
||||.... ......++.++|++++|+|+++..+.. ...++..+. ..+.|+++|+||+|+.. ..
T Consensus 59 DTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~-~~~i~~~l~-------~~~~pvilVlNKiDl~~~~~ 130 (292)
T PRK00089 59 DTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPG-DEFILEKLK-------KVKTPVILVLNKIDLVKDKE 130 (292)
T ss_pred ECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChh-HHHHHHHHh-------hcCCCEEEEEECCcCCCCHH
Confidence 89995332 233445678999999999998842222 122333332 13689999999999973 23
Q ss_pred CCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 72 VDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
.....+..+....++.+++.+||+++.|+++++..+...+.
T Consensus 131 ~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~ 171 (292)
T PRK00089 131 ELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLP 171 (292)
T ss_pred HHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCC
Confidence 33445555666666677999999999999999999988874
No 186
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.35 E-value=2.1e-11 Score=80.88 Aligned_cols=89 Identities=12% Similarity=0.086 Sum_probs=61.3
Q ss_pred hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCC-CCHHH-HHHHHHHcC---Cce
Q psy10891 14 VYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQ-VDIND-IECFYKEHN---FIG 88 (142)
Q Consensus 14 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-~~~~~-~~~~~~~~~---~~~ 88 (142)
.++.++|++++|+|++++.+..... ++..+. ..+.|+++++||+|+.... ...+. ...+....+ ..+
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~-------~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR-IAGLIL-------EEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAP 151 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHH-------hcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCc
Confidence 3567999999999999987765533 333332 1368999999999986521 22222 222233332 356
Q ss_pred EEEeeccCCCCHHHHHHHHHHH
Q psy10891 89 WTETSTKEGLMVNDSMKFLLDV 110 (142)
Q Consensus 89 ~~~~Sa~~~~~i~~l~~~l~~~ 110 (142)
++.+||+++.|+.+++..+.+.
T Consensus 152 ~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 152 IVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eEEEeccCCCCHHHHHHHHHHh
Confidence 9999999999999999988754
No 187
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.34 E-value=1.1e-11 Score=81.17 Aligned_cols=94 Identities=16% Similarity=0.076 Sum_probs=68.6
Q ss_pred CCCcchhhhh--------hhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC
Q psy10891 1 MTEGQERFTW--------MTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV 72 (142)
Q Consensus 1 Dt~G~e~~~~--------~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~ 72 (142)
||||...+.. ....++..+|++++|+|++++.+......|.. ..+.|+++|+||+|+.....
T Consensus 55 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~----------~~~~~vi~v~nK~D~~~~~~ 124 (157)
T cd04164 55 DTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL----------PADKPIIVVLNKSDLLPDSE 124 (157)
T ss_pred ECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh----------hcCCCEEEEEEchhcCCccc
Confidence 8999765542 23346779999999999998777666544322 15799999999999875221
Q ss_pred CHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 73 DINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
. ...... .+++++||+++.|+.+++.+|...+
T Consensus 125 ~------~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 125 L------LSLLAG-KPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred c------ccccCC-CceEEEECCCCCCHHHHHHHHHHhh
Confidence 1 222223 5699999999999999999988754
No 188
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.34 E-value=1.7e-11 Score=93.12 Aligned_cols=101 Identities=18% Similarity=0.150 Sum_probs=73.7
Q ss_pred CCCcc--------hhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC
Q psy10891 1 MTEGQ--------ERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV 72 (142)
Q Consensus 1 Dt~G~--------e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~ 72 (142)
||||. +.+...+..+++++|++++|+|..++.+..+. .+...+.+ .++|+++|+||+|+.....
T Consensus 53 DTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~-~i~~~l~~-------~~~piilVvNK~D~~~~~~ 124 (429)
T TIGR03594 53 DTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDE-EIAKWLRK-------SGKPVILVANKIDGKKEDA 124 (429)
T ss_pred ECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH-------hCCCEEEEEECccCCcccc
Confidence 89995 56666778889999999999999876554431 22222321 3689999999999865221
Q ss_pred CHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 73 DINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
. . ..+..+++.+++++||.+|.|+.++++.+...+..
T Consensus 125 ~---~-~~~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 125 V---A-AEFYSLGFGEPIPISAEHGRGIGDLLDAILELLPE 161 (429)
T ss_pred c---H-HHHHhcCCCCeEEEeCCcCCChHHHHHHHHHhcCc
Confidence 1 1 12345676579999999999999999999887744
No 189
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=5.3e-11 Score=90.47 Aligned_cols=103 Identities=17% Similarity=0.212 Sum_probs=77.5
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCCh---hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQ---NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDI 77 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~ 77 (142)
|||||+.|..|+..-..=+|++|+|+++++. ++.+.+. .. ...++|++++.||+|..+ ..+...
T Consensus 61 DTPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~----ha-------k~a~vP~iVAiNKiDk~~--~np~~v 127 (509)
T COG0532 61 DTPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAIN----HA-------KAAGVPIVVAINKIDKPE--ANPDKV 127 (509)
T ss_pred cCCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHH----HH-------HHCCCCEEEEEecccCCC--CCHHHH
Confidence 8999999999998888889999999999985 3444322 12 225899999999999864 334444
Q ss_pred HHHHHHcCC--------ceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891 78 ECFYKEHNF--------IGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 78 ~~~~~~~~~--------~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 116 (142)
..-..++|+ ..++.+||++|+|+.+|+..+.-..--...
T Consensus 128 ~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~aev~el 174 (509)
T COG0532 128 KQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLAEVLEL 174 (509)
T ss_pred HHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHHHHHhh
Confidence 444444454 348899999999999999988766655433
No 190
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.33 E-value=1.5e-11 Score=80.94 Aligned_cols=102 Identities=17% Similarity=0.101 Sum_probs=69.8
Q ss_pred CCCcchhh--------hhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CC
Q psy10891 1 MTEGQERF--------TWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQ 71 (142)
Q Consensus 1 Dt~G~e~~--------~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~ 71 (142)
||||.... ......++..+|++++|+|++++.+... ..+...+.. .+.|+++|+||+|+.. ..
T Consensus 57 DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~-~~~~~~~~~-------~~~~~iiv~nK~Dl~~~~~ 128 (168)
T cd04163 57 DTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGD-EFILELLKK-------SKTPVILVLNKIDLVKDKE 128 (168)
T ss_pred ECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchH-HHHHHHHHH-------hCCCEEEEEEchhccccHH
Confidence 78995433 2344556789999999999998732221 223333321 2589999999999863 22
Q ss_pred CCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891 72 VDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDV 110 (142)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 110 (142)
...+....+....+..+++++|++++.++++++..|.+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 129 DLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred HHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhh
Confidence 233344444555544679999999999999999998764
No 191
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.33 E-value=1.8e-11 Score=93.16 Aligned_cols=95 Identities=20% Similarity=0.162 Sum_probs=68.3
Q ss_pred CCCcchh--------hhhhhHhhhccCCEEEEEEeCCChhhHHH--HHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC
Q psy10891 1 MTEGQER--------FTWMTRVYYKDAHGCIIMFDLTNQNSFKN--TLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR 70 (142)
Q Consensus 1 Dt~G~e~--------~~~~~~~~~~~ad~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 70 (142)
||||++. +......++.++|++++|+|.+++.+..+ +..|+.. .+.|+++|+||+|+...
T Consensus 55 DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~----------~~~piilv~NK~D~~~~ 124 (435)
T PRK00093 55 DTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRK----------SNKPVILVVNKVDGPDE 124 (435)
T ss_pred ECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH----------cCCcEEEEEECccCccc
Confidence 8999887 33345667899999999999988654433 2233332 27899999999997431
Q ss_pred CCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHH
Q psy10891 71 QVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLD 109 (142)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 109 (142)
......+ ...++..++++||++|.|+.++++.+..
T Consensus 125 ---~~~~~~~-~~lg~~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 125 ---EADAYEF-YSLGLGEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred ---hhhHHHH-HhcCCCCCEEEEeeCCCCHHHHHHHHHh
Confidence 1222222 3456445899999999999999999987
No 192
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.32 E-value=2.6e-11 Score=82.67 Aligned_cols=97 Identities=14% Similarity=0.143 Sum_probs=68.1
Q ss_pred hhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHH----
Q psy10891 6 ERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFY---- 81 (142)
Q Consensus 6 e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~---- 81 (142)
..|..++..+++++|++++|+|++++.. .|...+.. ...+.|+++|+||+|+............+.
T Consensus 22 ~~~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~-----~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~ 91 (190)
T cd01855 22 DFILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRL-----FGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKA 91 (190)
T ss_pred HHHHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHH-----hcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHH
Confidence 3357788999999999999999987642 12222211 114689999999999875333344444443
Q ss_pred -HHcCC--ceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 82 -KEHNF--IGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 82 -~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
...+. .+++.+||+++.|+++++..|...+.
T Consensus 92 ~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 92 AAGLGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred HhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 22332 25899999999999999999988763
No 193
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.32 E-value=1.3e-11 Score=80.41 Aligned_cols=101 Identities=14% Similarity=0.086 Sum_probs=71.2
Q ss_pred CCCcchhhhhh-------hHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCC
Q psy10891 1 MTEGQERFTWM-------TRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVD 73 (142)
Q Consensus 1 Dt~G~e~~~~~-------~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~ 73 (142)
||||+..+... +..++..+|++++|+|..++.+..... |..... ..+.|+++|+||+|+.... .
T Consensus 51 Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~~-------~~~~~~ivv~nK~D~~~~~-~ 121 (163)
T cd00880 51 DTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEK-LLELLR-------ERGKPVLLVLNKIDLLPEE-E 121 (163)
T ss_pred ECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHH-------hcCCeEEEEEEccccCChh-h
Confidence 89998776543 345788999999999999987666544 333332 2579999999999986521 1
Q ss_pred HHHH----HHHHHHcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891 74 INDI----ECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDV 110 (142)
Q Consensus 74 ~~~~----~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 110 (142)
.... ..........+++++|+.++.|+.++++++...
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 122 EEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred HHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 1111 111222233679999999999999999998865
No 194
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.32 E-value=1.6e-11 Score=92.84 Aligned_cols=102 Identities=12% Similarity=0.083 Sum_probs=68.7
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChh----hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCC---
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQN----SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVD--- 73 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~----s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~--- 73 (142)
||||+++|....-.....+|++++|+|++++. +...+. ++... .-.|+++|+||+|+.+....
T Consensus 91 DtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~-~l~~~---------~i~~iiVVlNK~Dl~~~~~~~~~ 160 (411)
T PRK04000 91 DAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLM-ALDII---------GIKNIVIVQNKIDLVSKERALEN 160 (411)
T ss_pred ECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHH-HHHHc---------CCCcEEEEEEeeccccchhHHHH
Confidence 89999998876555566789999999999642 333222 11111 22468999999998652111
Q ss_pred HHHHHHHHHHc--CCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 74 INDIECFYKEH--NFIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 74 ~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
.+.+..++... ...+++++||+++.|++++++.|...+.
T Consensus 161 ~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 161 YEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 12333333322 1256999999999999999999987663
No 195
>KOG0462|consensus
Probab=99.31 E-value=7.1e-12 Score=95.34 Aligned_cols=107 Identities=15% Similarity=0.200 Sum_probs=85.4
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
|||||-+|+.-....+.-++++++|+|+.....-+...+++..+. .+.-+|.|.||+|+... .......++
T Consensus 131 DTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe--------~~L~iIpVlNKIDlp~a-dpe~V~~q~ 201 (650)
T KOG0462|consen 131 DTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE--------AGLAIIPVLNKIDLPSA-DPERVENQL 201 (650)
T ss_pred cCCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH--------cCCeEEEeeeccCCCCC-CHHHHHHHH
Confidence 899999999999889999999999999998877777777777775 57889999999999752 123333344
Q ss_pred HHHcCC--ceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891 81 YKEHNF--IGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 81 ~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 116 (142)
...+++ .+.+.+||++|.+++++++.|++.+.-.+.
T Consensus 202 ~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPpP~~ 239 (650)
T KOG0462|consen 202 FELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPPPKG 239 (650)
T ss_pred HHHhcCCccceEEEEeccCccHHHHHHHHHhhCCCCCC
Confidence 444443 358999999999999999999998865443
No 196
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.30 E-value=8.7e-12 Score=94.71 Aligned_cols=98 Identities=10% Similarity=0.045 Sum_probs=67.7
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHH--HHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CC----CC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNT--LKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQ----VD 73 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~----~~ 73 (142)
|||||++|...+..++..+|++++|+|+++..++... ..++. +.+.. ...|+|+|+||+|+.. .. ..
T Consensus 91 DtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~-~~~~~-----~~~~iIVviNK~Dl~~~~~~~~~~~ 164 (426)
T TIGR00483 91 DCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAF-LARTL-----GINQLIVAINKMDSVNYDEEEFEAI 164 (426)
T ss_pred ECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHH-HHHHc-----CCCeEEEEEEChhccCccHHHHHHH
Confidence 8999999988777778999999999999987543211 11111 11111 2357999999999863 11 12
Q ss_pred HHHHHHHHHHcCC----ceEEEeeccCCCCHHHHH
Q psy10891 74 INDIECFYKEHNF----IGWTETSTKEGLMVNDSM 104 (142)
Q Consensus 74 ~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~l~ 104 (142)
..++..+++..++ .+++++||+++.|+.+.+
T Consensus 165 ~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 165 KKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred HHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 3455566666653 469999999999998744
No 197
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.30 E-value=3.3e-11 Score=82.59 Aligned_cols=92 Identities=12% Similarity=0.100 Sum_probs=64.5
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCC-CC---CCHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPH-RQ---VDIN 75 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~-~~---~~~~ 75 (142)
||||+.+|.......+..+|++++|+|+....+-... ..+..+.. .++| +|++.||+|+.. .. ...+
T Consensus 71 DtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~-~~~~~~~~-------~~~~~iIvviNK~D~~~~~~~~~~~~~ 142 (195)
T cd01884 71 DCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTR-EHLLLARQ-------VGVPYIVVFLNKADMVDDEELLELVEM 142 (195)
T ss_pred ECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHHH-HHHHHHHH-------cCCCcEEEEEeCCCCCCcHHHHHHHHH
Confidence 8999999988888888999999999999875433332 23333321 3566 789999999853 11 1223
Q ss_pred HHHHHHHHcCC----ceEEEeeccCCCCH
Q psy10891 76 DIECFYKEHNF----IGWTETSTKEGLMV 100 (142)
Q Consensus 76 ~~~~~~~~~~~----~~~~~~Sa~~~~~i 100 (142)
++..+....++ .+++++||.+|.++
T Consensus 143 ~i~~~l~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 143 EVRELLSKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred HHHHHHHHhcccccCCeEEEeeCccccCC
Confidence 45555555554 57999999999875
No 198
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.29 E-value=1.9e-11 Score=79.18 Aligned_cols=97 Identities=22% Similarity=0.219 Sum_probs=72.2
Q ss_pred CCCc----chhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHH
Q psy10891 1 MTEG----QERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDIND 76 (142)
Q Consensus 1 Dt~G----~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~ 76 (142)
|||| ...|.+-.-....+||++++|.|.+++.+.-. ..+... -+.|+|-|+||+|+.......+.
T Consensus 42 DTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~~~~~~p-P~fa~~----------f~~pvIGVITK~Dl~~~~~~i~~ 110 (143)
T PF10662_consen 42 DTPGEYIENPRFYHALIVTAQDADVVLLLQDATEPRSVFP-PGFASM----------FNKPVIGVITKIDLPSDDANIER 110 (143)
T ss_pred ECChhheeCHHHHHHHHHHHhhCCEEEEEecCCCCCccCC-chhhcc----------cCCCEEEEEECccCccchhhHHH
Confidence 7888 44444444444568999999999998743222 122111 26899999999999743456777
Q ss_pred HHHHHHHcCCceEEEeeccCCCCHHHHHHHHH
Q psy10891 77 IECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108 (142)
Q Consensus 77 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 108 (142)
...+++..|...+|++|+.+|+|+++|.+.|-
T Consensus 111 a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 111 AKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred HHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 78889999988899999999999999998763
No 199
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.29 E-value=3.9e-11 Score=92.02 Aligned_cols=100 Identities=10% Similarity=0.040 Sum_probs=67.9
Q ss_pred hhccCCEEEEEEeCCCh----hhHHHHHHHHHHHHHhcccC-------CCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHH
Q psy10891 15 YYKDAHGCIIMFDLTNQ----NSFKNTLKWKKDVDLKCTLS-------DGSPIPCMLLANKCDLPHRQVDINDIECFYKE 83 (142)
Q Consensus 15 ~~~~ad~ii~v~d~~~~----~s~~~~~~~~~~~~~~~~~~-------~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 83 (142)
++.++|++|+|+|+++. ..+.++..|..++..+.... .....|+|+|+||+|+.......+........
T Consensus 233 hieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~ 312 (500)
T PRK12296 233 HIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEA 312 (500)
T ss_pred HHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHH
Confidence 45789999999999753 34555556665654322100 12468999999999986421112223333444
Q ss_pred cCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 84 HNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 84 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
.+ .+++.+||+++.|+++++.+|...+....
T Consensus 313 ~g-~~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 313 RG-WPVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred cC-CeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 55 46999999999999999999998886643
No 200
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.29 E-value=2.5e-11 Score=97.35 Aligned_cols=101 Identities=19% Similarity=0.086 Sum_probs=71.3
Q ss_pred CCCcchh--------hhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC
Q psy10891 1 MTEGQER--------FTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV 72 (142)
Q Consensus 1 Dt~G~e~--------~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~ 72 (142)
||||++. +...+..++..+|+++||+|.++..+..+ ..|...+. ..++|+|+|+||+|+....
T Consensus 329 DT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr-------~~~~pvIlV~NK~D~~~~~- 399 (712)
T PRK09518 329 DTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTD-ERIVRMLR-------RAGKPVVLAVNKIDDQASE- 399 (712)
T ss_pred eCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHH-------hcCCCEEEEEECcccccch-
Confidence 8999763 44556678899999999999987533222 24555553 1479999999999985421
Q ss_pred CHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 73 DINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
.....+ ...++...+++||++|.|+.++|++|+..+..
T Consensus 400 --~~~~~~-~~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 400 --YDAAEF-WKLGLGEPYPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred --hhHHHH-HHcCCCCeEEEECCCCCCchHHHHHHHHhccc
Confidence 111222 22344346789999999999999999988754
No 201
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.29 E-value=3.5e-11 Score=94.42 Aligned_cols=100 Identities=20% Similarity=0.193 Sum_probs=70.5
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCC---hhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC--C-CCC-
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTN---QNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH--R-QVD- 73 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~--~-~~~- 73 (142)
||||+++|..++...+..+|++++|+|+++ +.++..+.. +. ..++|+++++||+|+.. . ...
T Consensus 77 DTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~-------~~~vpiIvviNK~D~~~~~~~~~~~ 145 (586)
T PRK04004 77 DTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LK-------RRKTPFVVAANKIDRIPGWKSTEDA 145 (586)
T ss_pred ECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HH-------HcCCCEEEEEECcCCchhhhhhcCc
Confidence 899999999999999999999999999997 555554432 21 14789999999999852 1 000
Q ss_pred -------------HH-------HHHHHHHHc--------------CCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 74 -------------IN-------DIECFYKEH--------------NFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 74 -------------~~-------~~~~~~~~~--------------~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
.. .+....... +..+++.+||.+|.|+.+++..+...+
T Consensus 146 ~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 146 PFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred hHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 00 000111222 235689999999999999998886533
No 202
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.29 E-value=2.2e-11 Score=91.54 Aligned_cols=113 Identities=14% Similarity=0.160 Sum_probs=89.3
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
|||||-+|.--....+.-+.++++|+|++....-+.+.+.+..+. .+..+|.|.||+|+... .......++
T Consensus 82 DTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle--------~~LeIiPViNKIDLP~A-dpervk~eI 152 (603)
T COG0481 82 DTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE--------NNLEIIPVLNKIDLPAA-DPERVKQEI 152 (603)
T ss_pred CCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH--------cCcEEEEeeecccCCCC-CHHHHHHHH
Confidence 899999999888888889999999999998877777778888886 57899999999999752 122333344
Q ss_pred HHHcCCc--eEEEeeccCCCCHHHHHHHHHHHHHHHhCCCCCCC
Q psy10891 81 YKEHNFI--GWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFPN 122 (142)
Q Consensus 81 ~~~~~~~--~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~~~~~~ 122 (142)
..-.|+. ..+.+||++|.||+++++.|+..+...++..+.|.
T Consensus 153 e~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~~~~pL 196 (603)
T COG0481 153 EDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKGDPDAPL 196 (603)
T ss_pred HHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCCCCCCCcc
Confidence 4455642 37889999999999999999999977765544443
No 203
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.28 E-value=2.5e-11 Score=95.31 Aligned_cols=106 Identities=13% Similarity=0.107 Sum_probs=76.0
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC--CHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV--DINDIE 78 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~ 78 (142)
||||+.+|...+..+++.+|++++|+|+.+.. ......|+..+.. .++|+|+|+||+|+..... ...++.
T Consensus 70 DTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~-------~~ip~IVviNKiD~~~a~~~~v~~ei~ 141 (594)
T TIGR01394 70 DTPGHADFGGEVERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE-------LGLKPIVVINKIDRPSARPDEVVDEVF 141 (594)
T ss_pred ECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH-------CCCCEEEEEECCCCCCcCHHHHHHHHH
Confidence 89999999999999999999999999998743 2333455555531 4689999999999854111 122333
Q ss_pred HHHHHcC------CceEEEeeccCCC----------CHHHHHHHHHHHHHHH
Q psy10891 79 CFYKEHN------FIGWTETSTKEGL----------MVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 79 ~~~~~~~------~~~~~~~Sa~~~~----------~i~~l~~~l~~~~~~~ 114 (142)
.++...+ ..|++.+||++|. |+..+|+.|+..+...
T Consensus 142 ~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 142 DLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred HHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 3332211 1468999999995 7999999988877543
No 204
>KOG0072|consensus
Probab=99.28 E-value=1.8e-11 Score=78.52 Aligned_cols=110 Identities=17% Similarity=0.164 Sum_probs=76.5
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
|..||-..+..|+.||.+.|++|+|+|.+|..........+-.+. +..+..+.-+++++||.|...+....+....+
T Consensus 68 dLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL---~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L 144 (182)
T KOG0072|consen 68 DLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSML---QEEELQHAKLLVFANKQDYSGALTRSEVLKML 144 (182)
T ss_pred EccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHh---ccHhhcCceEEEEeccccchhhhhHHHHHHHh
Confidence 567888888999999999999999999998764443333222222 34444678899999999975422111211111
Q ss_pred ----HHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 81 ----YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 81 ----~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
.+.. ...++.+||.+|+|++..++|+.+.+..+
T Consensus 145 ~l~~Lk~r-~~~Iv~tSA~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 145 GLQKLKDR-IWQIVKTSAVKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred ChHHHhhh-eeEEEeeccccccCCcHHHHHHHHHHhcc
Confidence 1122 24588999999999999999999887543
No 205
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.28 E-value=9.9e-12 Score=78.27 Aligned_cols=61 Identities=31% Similarity=0.547 Sum_probs=50.6
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH---HHHHHHHHhcccCCCCCCCEEEEEeCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL---KWKKDVDLKCTLSDGSPIPCMLLANKCD 66 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~---~~~~~~~~~~~~~~~~~~p~ilv~nK~D 66 (142)
|++|++.+...+..++.++|++++|||++++.|+..+. .|+..+.... .++|+++|+||.|
T Consensus 56 d~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~-----~~~piilv~nK~D 119 (119)
T PF08477_consen 56 DFGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRD-----KNIPIILVGNKSD 119 (119)
T ss_dssp EESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHS-----SCSEEEEEEE-TC
T ss_pred ecCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccC-----CCCCEEEEEeccC
Confidence 68899999998888899999999999999999998875 4566664332 5699999999998
No 206
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.27 E-value=2.7e-11 Score=83.79 Aligned_cols=96 Identities=18% Similarity=0.081 Sum_probs=63.4
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCC-----CCHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQ-----VDIN 75 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-----~~~~ 75 (142)
||||+++|...+...++.+|++++|+|++++..-.....| ..+. .. ...++|+|+||+|+.... ....
T Consensus 83 DTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~-~~~~-~~-----~~~~iIvviNK~D~~~~~~~~~~~i~~ 155 (208)
T cd04166 83 DTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHS-YILS-LL-----GIRHVVVAVNKMDLVDYSEEVFEEIVA 155 (208)
T ss_pred ECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHH-HHHH-Hc-----CCCcEEEEEEchhcccCCHHHHHHHHH
Confidence 8999999987777788999999999999876432222222 1121 11 123578899999986411 0122
Q ss_pred HHHHHHHHcCC--ceEEEeeccCCCCHHHH
Q psy10891 76 DIECFYKEHNF--IGWTETSTKEGLMVNDS 103 (142)
Q Consensus 76 ~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l 103 (142)
.+..++..+++ .+++.+||+++.|+.+.
T Consensus 156 ~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 156 DYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 34445556663 34899999999998753
No 207
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.26 E-value=7.5e-11 Score=80.33 Aligned_cols=102 Identities=12% Similarity=0.142 Sum_probs=68.2
Q ss_pred CCCc----------chhhhhhhHhhhccC---CEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCC
Q psy10891 1 MTEG----------QERFTWMTRVYYKDA---HGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDL 67 (142)
Q Consensus 1 Dt~G----------~e~~~~~~~~~~~~a---d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 67 (142)
|||| +++|..+...++..+ +++++|+|.+++.+.... .+...+. ..++|+++++||+|+
T Consensus 76 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~-------~~~~~~iiv~nK~Dl 147 (196)
T PRK00454 76 DLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLK-------EYGIPVLIVLTKADK 147 (196)
T ss_pred CCCCCCCcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHH-------HcCCcEEEEEECccc
Confidence 8999 467777777777655 678889998876444331 1112221 136899999999998
Q ss_pred CCC-C--CCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 68 PHR-Q--VDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 68 ~~~-~--~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
... . ...+.+........ .+++++||+++.|+.++++.|...+
T Consensus 148 ~~~~~~~~~~~~i~~~l~~~~-~~~~~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 148 LKKGERKKQLKKVRKALKFGD-DEVILFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred CCHHHHHHHHHHHHHHHHhcC-CceEEEEcCCCCCHHHHHHHHHHHh
Confidence 651 1 11222333344333 4689999999999999999987665
No 208
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.26 E-value=6e-11 Score=81.79 Aligned_cols=68 Identities=18% Similarity=0.227 Sum_probs=53.8
Q ss_pred CCCcchhhhhhhHhhhccC-CEEEEEEeCCCh-hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDA-HGCIIMFDLTNQ-NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~a-d~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
||||+++|..++..+++++ +++|||+|+.+. .++.....|+..+..... ....++|+++++||+|+..
T Consensus 54 D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~-~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 54 DVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLE-KVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred ECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHh-hccCCCCEEEEecchhhcc
Confidence 8999999999999999999 999999999987 677776666655432211 1225899999999999854
No 209
>PRK10218 GTP-binding protein; Provisional
Probab=99.26 E-value=5.7e-11 Score=93.39 Aligned_cols=106 Identities=12% Similarity=0.106 Sum_probs=74.1
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC--CCCHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR--QVDINDIE 78 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--~~~~~~~~ 78 (142)
||||+.+|...+..+++.+|++++|+|+.+.........|..... .++|+|+++||+|+... ....+++.
T Consensus 74 DTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~--------~gip~IVviNKiD~~~a~~~~vl~ei~ 145 (607)
T PRK10218 74 DTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFA--------YGLKPIVVINKVDRPGARPDWVVDQVF 145 (607)
T ss_pred ECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHH--------cCCCEEEEEECcCCCCCchhHHHHHHH
Confidence 899999999999999999999999999987644433333332221 47899999999998641 11122333
Q ss_pred HHHHHcC------CceEEEeeccCCC----------CHHHHHHHHHHHHHHH
Q psy10891 79 CFYKEHN------FIGWTETSTKEGL----------MVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 79 ~~~~~~~------~~~~~~~Sa~~~~----------~i~~l~~~l~~~~~~~ 114 (142)
.++...+ -.|++.+||.+|. ++..+++.|+..+...
T Consensus 146 ~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 146 DLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred HHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 3332211 1468999999998 5788888777776443
No 210
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.26 E-value=1.9e-11 Score=85.20 Aligned_cols=94 Identities=12% Similarity=0.034 Sum_probs=62.0
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChh-------hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQN-------SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVD 73 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~-------s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~ 73 (142)
||||+.+|...+...+..+|++++|+|+++.. .......|. ... .. ...|+|+++||+|+......
T Consensus 83 DtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~-~~-----~~~~iiivvNK~Dl~~~~~~ 155 (219)
T cd01883 83 DAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LAR-TL-----GVKQLIVAVNKMDDVTVNWS 155 (219)
T ss_pred ECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHH-Hc-----CCCeEEEEEEcccccccccc
Confidence 89999998877777788999999999998741 112222222 111 11 23689999999998631111
Q ss_pred -------HHHHHHHHHHcCC----ceEEEeeccCCCCHH
Q psy10891 74 -------INDIECFYKEHNF----IGWTETSTKEGLMVN 101 (142)
Q Consensus 74 -------~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~ 101 (142)
.+.+..++...++ .+++.+||++|.|++
T Consensus 156 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 156 EERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 1223333455543 469999999999986
No 211
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.26 E-value=8.6e-12 Score=82.30 Aligned_cols=95 Identities=17% Similarity=0.174 Sum_probs=61.7
Q ss_pred CCCcchhhh------hhhHhhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CC
Q psy10891 1 MTEGQERFT------WMTRVYY--KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQ 71 (142)
Q Consensus 1 Dt~G~e~~~------~~~~~~~--~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~ 71 (142)
||||.-.+. .++..|+ ...|++++|+|+++......+-.++.+ -++|+|+|.||+|... +.
T Consensus 53 DlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~l~r~l~l~~ql~e----------~g~P~vvvlN~~D~a~~~g 122 (156)
T PF02421_consen 53 DLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATNLERNLYLTLQLLE----------LGIPVVVVLNKMDEAERKG 122 (156)
T ss_dssp E----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGGHHHHHHHHHHHHH----------TTSSEEEEEETHHHHHHTT
T ss_pred ECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCCHHHHHHHHHHHHH----------cCCCEEEEEeCHHHHHHcC
Confidence 788842222 2344454 689999999999875433222222222 3799999999999865 22
Q ss_pred CCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHH
Q psy10891 72 VDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFL 107 (142)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 107 (142)
.. -+...+.+.++ .|++.+||+++.|++++++.|
T Consensus 123 ~~-id~~~Ls~~Lg-~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 123 IE-IDAEKLSERLG-VPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp EE-E-HHHHHHHHT-S-EEEEBTTTTBTHHHHHHHH
T ss_pred CE-ECHHHHHHHhC-CCEEEEEeCCCcCHHHHHhhC
Confidence 22 23556677788 679999999999999999875
No 212
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.25 E-value=1.7e-11 Score=93.09 Aligned_cols=98 Identities=12% Similarity=0.037 Sum_probs=65.4
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCC--hhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CC----CC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTN--QNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQ----VD 73 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~----~~ 73 (142)
||||+++|...+...+..+|++++|+|+++ ...-.. ..++..+. .. ...|+++++||+|+.. .. ..
T Consensus 90 DtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~-~~~~~~~~-~~-----~~~~iivviNK~Dl~~~~~~~~~~~ 162 (425)
T PRK12317 90 DCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQT-REHVFLAR-TL-----GINQLIVAINKMDAVNYDEKRYEEV 162 (425)
T ss_pred ECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcch-HHHHHHHH-Hc-----CCCeEEEEEEccccccccHHHHHHH
Confidence 899999998766666789999999999987 322111 12222221 11 1246999999999864 11 12
Q ss_pred HHHHHHHHHHcCC----ceEEEeeccCCCCHHHHHH
Q psy10891 74 INDIECFYKEHNF----IGWTETSTKEGLMVNDSMK 105 (142)
Q Consensus 74 ~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~l~~ 105 (142)
.+++..++...++ .+++++||++|.|+.++..
T Consensus 163 ~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~~ 198 (425)
T PRK12317 163 KEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKSE 198 (425)
T ss_pred HHHHHHHHHhhCCCcCcceEEEeecccCCCcccccc
Confidence 2345556666664 4689999999999987543
No 213
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.25 E-value=6.5e-11 Score=88.14 Aligned_cols=96 Identities=16% Similarity=0.186 Sum_probs=72.8
Q ss_pred chhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH----
Q psy10891 5 QERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF---- 80 (142)
Q Consensus 5 ~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~---- 80 (142)
.++|..+...++.+++++++|+|+.+.. ..|..++.++. .+.|+++|+||+|+..+....+.+..|
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~ 119 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKR 119 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHH
Confidence 5688889999999999999999997654 23555555433 468999999999997644444454443
Q ss_pred HHHcCCc--eEEEeeccCCCCHHHHHHHHHHH
Q psy10891 81 YKEHNFI--GWTETSTKEGLMVNDSMKFLLDV 110 (142)
Q Consensus 81 ~~~~~~~--~~~~~Sa~~~~~i~~l~~~l~~~ 110 (142)
++..++. .++.+||+++.|+++++..+...
T Consensus 120 ~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 120 AKELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 5566642 48899999999999999998654
No 214
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.24 E-value=1.2e-10 Score=95.83 Aligned_cols=100 Identities=17% Similarity=0.190 Sum_probs=69.5
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCC---hhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCC-C--
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTN---QNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQV-D-- 73 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~-~-- 73 (142)
||||++.|..++...+..+|++++|+|+++ +.++..+. .+.. .++|+++|+||+|+.. ... .
T Consensus 532 DTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~----~lk~-------~~iPiIVViNKiDL~~~~~~~~~~ 600 (1049)
T PRK14845 532 DTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAIN----ILRQ-------YKTPFVVAANKIDLIPGWNISEDE 600 (1049)
T ss_pred ECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHH----HHHH-------cCCCEEEEEECCCCccccccccch
Confidence 899999999998888899999999999987 34444332 2221 3689999999999853 110 0
Q ss_pred ----------HHHHHHH----------HHHc--------------CCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 74 ----------INDIECF----------YKEH--------------NFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 74 ----------~~~~~~~----------~~~~--------------~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
......+ +... +..+++.|||++|+|+++|+..|....
T Consensus 601 ~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 601 PFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 0001111 1112 235789999999999999998776543
No 215
>COG1159 Era GTPase [General function prediction only]
Probab=99.23 E-value=8.5e-11 Score=83.88 Aligned_cols=105 Identities=18% Similarity=0.129 Sum_probs=74.5
Q ss_pred CCCcc--------hhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC
Q psy10891 1 MTEGQ--------ERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV 72 (142)
Q Consensus 1 Dt~G~--------e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~ 72 (142)
||||- +.........+.++|+++||+|++++..-.+ +..++.+.+ .+.|+|++.||+|......
T Consensus 60 DTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d-~~il~~lk~-------~~~pvil~iNKID~~~~~~ 131 (298)
T COG1159 60 DTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGD-EFILEQLKK-------TKTPVILVVNKIDKVKPKT 131 (298)
T ss_pred eCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccH-HHHHHHHhh-------cCCCeEEEEEccccCCcHH
Confidence 89992 2223334666789999999999998532222 233455531 3679999999999876222
Q ss_pred -CHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 73 -DINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 73 -~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
..+....+.....+..++++||++|.|++.+.+.+..++.+
T Consensus 132 ~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 132 VLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPE 173 (298)
T ss_pred HHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCC
Confidence 24555555566677789999999999999999998887754
No 216
>PRK12736 elongation factor Tu; Reviewed
Probab=99.22 E-value=8.7e-11 Score=88.46 Aligned_cols=103 Identities=15% Similarity=0.136 Sum_probs=68.8
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCC-CCC---CHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPH-RQV---DIN 75 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~-~~~---~~~ 75 (142)
||||+++|...+-.....+|++++|+|++....-...+ .+..+.. .++| +|+++||+|+.+ ... ..+
T Consensus 81 DtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~-~~~~~~~-------~g~~~~IvviNK~D~~~~~~~~~~i~~ 152 (394)
T PRK12736 81 DCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTRE-HILLARQ-------VGVPYLVVFLNKVDLVDDEELLELVEM 152 (394)
T ss_pred ECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHH-HHHHHHH-------cCCCEEEEEEEecCCcchHHHHHHHHH
Confidence 89999999887777778999999999998753322222 2222321 3678 678999999864 111 123
Q ss_pred HHHHHHHHcCC----ceEEEeeccCCC--------CHHHHHHHHHHHH
Q psy10891 76 DIECFYKEHNF----IGWTETSTKEGL--------MVNDSMKFLLDVL 111 (142)
Q Consensus 76 ~~~~~~~~~~~----~~~~~~Sa~~~~--------~i~~l~~~l~~~~ 111 (142)
++..++...++ .+++.+||+++. ++..+++.+...+
T Consensus 153 ~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 153 EVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred HHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 45555555554 479999999983 4566666665554
No 217
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.21 E-value=1.1e-10 Score=89.07 Aligned_cols=105 Identities=10% Similarity=0.083 Sum_probs=69.8
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCCh-hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCC---HHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQ-NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVD---IND 76 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~---~~~ 76 (142)
||||+++|...+-..+..+|++++|+|++.+ ......+.+. .+. .. .-.++|+|.||+|+.+.... .++
T Consensus 123 DtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~-~l-----gi~~iIVvlNKiDlv~~~~~~~~~~e 195 (460)
T PTZ00327 123 DCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVE-IM-----KLKHIIILQNKIDLVKEAQAQDQYEE 195 (460)
T ss_pred eCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHH-Hc-----CCCcEEEEEecccccCHHHHHHHHHH
Confidence 8999999988877788899999999999874 2222222222 211 01 12368999999998641111 122
Q ss_pred HHHHHHHc--CCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 77 IECFYKEH--NFIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 77 ~~~~~~~~--~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
+..+.... ...+++.+||++|.|++.|++.|...+.
T Consensus 196 i~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 196 IRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 22222221 2357999999999999999988886553
No 218
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.20 E-value=1.3e-10 Score=76.79 Aligned_cols=95 Identities=16% Similarity=0.164 Sum_probs=65.2
Q ss_pred hhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCc
Q psy10891 8 FTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFI 87 (142)
Q Consensus 8 ~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~ 87 (142)
|+.+++.+.+++|++++|+|++++.+... ..+...+. ..+.|+++|+||+|+..... ......+....+ .
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~-------~~~~p~iiv~NK~Dl~~~~~-~~~~~~~~~~~~-~ 71 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL-------ELGKKLLIVLNKADLVPKEV-LEKWKSIKESEG-I 71 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH-------hCCCcEEEEEEhHHhCCHHH-HHHHHHHHHhCC-C
Confidence 45677888899999999999988654332 12222221 13689999999999854111 111112333344 4
Q ss_pred eEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 88 GWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 88 ~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
+++.+||+++.|+++++..+...+.
T Consensus 72 ~~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 72 PVVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred cEEEEEccccccHHHHHHHHHHHHh
Confidence 6899999999999999999988765
No 219
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.19 E-value=2.5e-11 Score=92.61 Aligned_cols=94 Identities=16% Similarity=0.163 Sum_probs=66.5
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHH-------HHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFK-------NTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPHRQV 72 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~ 72 (142)
|||||++|...+...+..+|++|+|+|+++. +|+ .....+.... ..++| +|+++||+|+.....
T Consensus 91 DtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~-------~~gi~~iIV~vNKmD~~~~~~ 162 (447)
T PLN00043 91 DAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAF-------TLGVKQMICCCNKMDATTPKY 162 (447)
T ss_pred ECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHH-------HcCCCcEEEEEEcccCCchhh
Confidence 8999999999999999999999999999873 221 1222221111 13675 788999999752111
Q ss_pred -------CHHHHHHHHHHcCC----ceEEEeeccCCCCHHH
Q psy10891 73 -------DINDIECFYKEHNF----IGWTETSTKEGLMVND 102 (142)
Q Consensus 73 -------~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~ 102 (142)
..+++..+++..++ .+++++||.+|.|+.+
T Consensus 163 ~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 163 SKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 24456666777664 4699999999999853
No 220
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.19 E-value=1.1e-10 Score=78.70 Aligned_cols=93 Identities=13% Similarity=0.173 Sum_probs=62.0
Q ss_pred CCCc----------chhhhhhhHhhhcc---CCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCC
Q psy10891 1 MTEG----------QERFTWMTRVYYKD---AHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDL 67 (142)
Q Consensus 1 Dt~G----------~e~~~~~~~~~~~~---ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 67 (142)
|||| .+.|..+...|++. ++++++|+|.+.+.+..... ++..+. ..++|+++|+||+|+
T Consensus 70 DtpG~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~-------~~~~pviiv~nK~D~ 141 (179)
T TIGR03598 70 DLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLR-------ERGIPVLIVLTKADK 141 (179)
T ss_pred eCCCCccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHH-------HcCCCEEEEEECccc
Confidence 8999 35566666777764 57999999998865555532 223332 136899999999998
Q ss_pred CCC---CCCHHHHHHHHHHcCC-ceEEEeeccCCCCHH
Q psy10891 68 PHR---QVDINDIECFYKEHNF-IGWTETSTKEGLMVN 101 (142)
Q Consensus 68 ~~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~ 101 (142)
... ....+.+...+...+. .+++++||++|+|++
T Consensus 142 ~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 142 LKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKTGID 179 (179)
T ss_pred CCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCCCCC
Confidence 641 1123344444544432 259999999999873
No 221
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.16 E-value=1.8e-10 Score=86.71 Aligned_cols=90 Identities=14% Similarity=0.175 Sum_probs=61.3
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEE-EEEeCCCCCC-CCC---CHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCM-LLANKCDLPH-RQV---DIN 75 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~D~~~-~~~---~~~ 75 (142)
||||+++|...+-.....+|++++|+|++........+.| ..+.. .++|.+ +++||+|+.+ ... ..+
T Consensus 81 DtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l-~~~~~-------~gi~~iIvvvNK~Dl~~~~~~~~~~~~ 152 (394)
T TIGR00485 81 DCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHI-LLARQ-------VGVPYIVVFLNKCDMVDDEELLELVEM 152 (394)
T ss_pred ECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH-HHHHH-------cCCCEEEEEEEecccCCHHHHHHHHHH
Confidence 8999999987776667789999999999874333322222 22221 367755 6899999865 111 123
Q ss_pred HHHHHHHHcCC----ceEEEeeccCCC
Q psy10891 76 DIECFYKEHNF----IGWTETSTKEGL 98 (142)
Q Consensus 76 ~~~~~~~~~~~----~~~~~~Sa~~~~ 98 (142)
++..+++.+++ .+++++||.++.
T Consensus 153 ~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 153 EVRELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHHHHHHhcCCCccCccEEECcccccc
Confidence 46666776664 579999999875
No 222
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.16 E-value=5.4e-10 Score=73.63 Aligned_cols=100 Identities=15% Similarity=0.235 Sum_probs=65.9
Q ss_pred CCCc----------chhhhhhhHhhhcc---CCEEEEEEeCCChhhH--HHHHHHHHHHHHhcccCCCCCCCEEEEEeCC
Q psy10891 1 MTEG----------QERFTWMTRVYYKD---AHGCIIMFDLTNQNSF--KNTLKWKKDVDLKCTLSDGSPIPCMLLANKC 65 (142)
Q Consensus 1 Dt~G----------~e~~~~~~~~~~~~---ad~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 65 (142)
|||| ++.+..++..|+.. ++++++++|.+...+. ..+..|+... +.|+++|+||+
T Consensus 51 D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~----------~~~vi~v~nK~ 120 (170)
T cd01876 51 DLPGYGYAKVSKEVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL----------GIPFLVVLTKA 120 (170)
T ss_pred cCCCccccccCHHHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc----------CCCEEEEEEch
Confidence 7887 45566666667653 5788999998865322 2233444432 58999999999
Q ss_pred CCCCCC---CCHHHHHHHHH-HcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891 66 DLPHRQ---VDINDIECFYK-EHNFIGWTETSTKEGLMVNDSMKFLLDV 110 (142)
Q Consensus 66 D~~~~~---~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 110 (142)
|+.... ..........+ .....+++++|++++.++.++++.|.++
T Consensus 121 D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 121 DKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred hcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence 985411 11122222222 2333568999999999999999999875
No 223
>PRK12289 GTPase RsgA; Reviewed
Probab=99.15 E-value=2.5e-10 Score=84.60 Aligned_cols=94 Identities=14% Similarity=0.115 Sum_probs=67.4
Q ss_pred hhhhhHhhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCC
Q psy10891 8 FTWMTRVYYKDAHGCIIMFDLTNQN-SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNF 86 (142)
Q Consensus 8 ~~~~~~~~~~~ad~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~ 86 (142)
-+.+.+.+++++|.+++|+|+.++. +...+..|+.... ..++|+|||+||+|+..... .......+..+++
T Consensus 79 ~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~-------~~~ip~ILVlNK~DLv~~~~-~~~~~~~~~~~g~ 150 (352)
T PRK12289 79 KTELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE-------STGLEIVLCLNKADLVSPTE-QQQWQDRLQQWGY 150 (352)
T ss_pred ccceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH-------HCCCCEEEEEEchhcCChHH-HHHHHHHHHhcCC
Confidence 3345566789999999999998765 4555677776552 15799999999999964110 1122223346674
Q ss_pred ceEEEeeccCCCCHHHHHHHHHHH
Q psy10891 87 IGWTETSTKEGLMVNDSMKFLLDV 110 (142)
Q Consensus 87 ~~~~~~Sa~~~~~i~~l~~~l~~~ 110 (142)
+++.+||+++.|+++|+..+...
T Consensus 151 -~v~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 151 -QPLFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred -eEEEEEcCCCCCHHHHhhhhccc
Confidence 68999999999999999888643
No 224
>PRK00098 GTPase RsgA; Reviewed
Probab=99.15 E-value=1.1e-10 Score=84.89 Aligned_cols=85 Identities=15% Similarity=0.208 Sum_probs=62.3
Q ss_pred hccCCEEEEEEeCCChhhHHH-HHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeec
Q psy10891 16 YKDAHGCIIMFDLTNQNSFKN-TLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETST 94 (142)
Q Consensus 16 ~~~ad~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 94 (142)
.+++|++++|+|+.++.++.. +..|+..+.. .++|+++|+||+|+.................+ .+++.+||
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~-------~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g-~~v~~vSA 149 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA-------NGIKPIIVLNKIDLLDDLEEARELLALYRAIG-YDVLELSA 149 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH-------CCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCC-CeEEEEeC
Confidence 489999999999988765443 5678766631 47899999999998531111222334455566 46999999
Q ss_pred cCCCCHHHHHHHHH
Q psy10891 95 KEGLMVNDSMKFLL 108 (142)
Q Consensus 95 ~~~~~i~~l~~~l~ 108 (142)
+++.|+++++..+.
T Consensus 150 ~~g~gi~~L~~~l~ 163 (298)
T PRK00098 150 KEGEGLDELKPLLA 163 (298)
T ss_pred CCCccHHHHHhhcc
Confidence 99999999998874
No 225
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.15 E-value=4.7e-10 Score=90.45 Aligned_cols=100 Identities=17% Similarity=0.079 Sum_probs=73.4
Q ss_pred CCCcchhhhhh----------hHhhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC
Q psy10891 1 MTEGQERFTWM----------TRVYY--KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP 68 (142)
Q Consensus 1 Dt~G~e~~~~~----------~~~~~--~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 68 (142)
||||+..+... ...++ ..+|++++|+|.++.+... .|..++.. .++|+++|+||+|+.
T Consensus 56 DtPG~ysl~~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat~ler~l---~l~~ql~e-------~giPvIvVlNK~Dl~ 125 (772)
T PRK09554 56 DLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNL---YLTLQLLE-------LGIPCIVALNMLDIA 125 (772)
T ss_pred ECCCccccccccccccHHHHHHHHHHhccCCCEEEEEecCCcchhhH---HHHHHHHH-------cCCCEEEEEEchhhh
Confidence 89999877532 22343 4899999999998854322 24344431 369999999999986
Q ss_pred CCCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 69 HRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
++.......+.+.+.++ .|++.+|+.++.|++++++.+....
T Consensus 126 ~~~~i~id~~~L~~~LG-~pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 126 EKQNIRIDIDALSARLG-CPVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred hccCcHHHHHHHHHHhC-CCEEEEEeecCCCHHHHHHHHHHhh
Confidence 52223455677788888 5799999999999999999887764
No 226
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.15 E-value=2.1e-10 Score=79.56 Aligned_cols=60 Identities=17% Similarity=0.185 Sum_probs=48.3
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP 68 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 68 (142)
||||+++|...+..++..+|++++|+|+.+..++.. ..|+.... ..++|+++|+||+|+.
T Consensus 77 DtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~-------~~~~p~iiviNK~D~~ 136 (213)
T cd04167 77 DTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAI-------LEGLPIVLVINKIDRL 136 (213)
T ss_pred ECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHH-------HcCCCEEEEEECcccC
Confidence 899999999899999999999999999988766543 34444432 1358999999999975
No 227
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.14 E-value=5.8e-10 Score=83.66 Aligned_cols=98 Identities=17% Similarity=0.148 Sum_probs=72.0
Q ss_pred CCCcchhhh---------hhhHhhhccCCEEEEEEeCCChhhHHH--HHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 1 MTEGQERFT---------WMTRVYYKDAHGCIIMFDLTNQNSFKN--TLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 1 Dt~G~e~~~---------~~~~~~~~~ad~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
||+|.+.-. ......+..||++|||+|.....+-.+ +..|+.. .++|+|||+||+|...
T Consensus 57 DTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~----------~~kpviLvvNK~D~~~ 126 (444)
T COG1160 57 DTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRR----------SKKPVILVVNKIDNLK 126 (444)
T ss_pred ECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh----------cCCCEEEEEEcccCch
Confidence 788855322 234666789999999999988655444 2233331 4799999999999742
Q ss_pred CCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 70 RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
.+....-+..+|+-.++.+||..|.|+.+|++.++..+.
T Consensus 127 ----~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 127 ----AEELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred ----hhhhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhhcC
Confidence 233333455677777999999999999999999999983
No 228
>PRK12735 elongation factor Tu; Reviewed
Probab=99.14 E-value=3.7e-10 Score=85.12 Aligned_cols=103 Identities=12% Similarity=0.146 Sum_probs=69.1
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEE-EEEeCCCCCCC-C---CCHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCM-LLANKCDLPHR-Q---VDIN 75 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~D~~~~-~---~~~~ 75 (142)
||||+++|...+...+..+|++++|+|+........ ...+..+. ..++|.+ +++||+|+.+. . ....
T Consensus 81 DtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt-~e~l~~~~-------~~gi~~iivvvNK~Dl~~~~~~~~~~~~ 152 (396)
T PRK12735 81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQT-REHILLAR-------QVGVPYIVVFLNKCDMVDDEELLELVEM 152 (396)
T ss_pred ECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhH-HHHHHHHH-------HcCCCeEEEEEEecCCcchHHHHHHHHH
Confidence 899999998877777889999999999987533322 22333332 1367865 57999998641 1 1122
Q ss_pred HHHHHHHHcCC----ceEEEeeccCCC----------CHHHHHHHHHHHH
Q psy10891 76 DIECFYKEHNF----IGWTETSTKEGL----------MVNDSMKFLLDVL 111 (142)
Q Consensus 76 ~~~~~~~~~~~----~~~~~~Sa~~~~----------~i~~l~~~l~~~~ 111 (142)
++..++..+++ .+++++||.++. ++..|++.|...+
T Consensus 153 ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 153 EVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred HHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 45555666553 568999999984 5666666666543
No 229
>PRK09866 hypothetical protein; Provisional
Probab=99.13 E-value=1.2e-09 Score=85.56 Aligned_cols=103 Identities=17% Similarity=0.181 Sum_probs=69.0
Q ss_pred CCCcchh-----hhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCH
Q psy10891 1 MTEGQER-----FTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDI 74 (142)
Q Consensus 1 Dt~G~e~-----~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~ 74 (142)
||||... ++..+...+.++|+|+||+|++...+..+ ...+..+.... ...|+++|+||+|+.+ .....
T Consensus 236 DTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~-----K~~PVILVVNKIDl~dreeddk 309 (741)
T PRK09866 236 DTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG-----QSVPLYVLVNKFDQQDRNSDDA 309 (741)
T ss_pred ECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC-----CCCCEEEEEEcccCCCcccchH
Confidence 8999532 33345557899999999999987655444 23344443111 2369999999999864 22224
Q ss_pred HHHHHHHH----Hc--CCceEEEeeccCCCCHHHHHHHHHH
Q psy10891 75 NDIECFYK----EH--NFIGWTETSTKEGLMVNDSMKFLLD 109 (142)
Q Consensus 75 ~~~~~~~~----~~--~~~~~~~~Sa~~~~~i~~l~~~l~~ 109 (142)
+.+..+.. .. .+..++.+||+.|.|++++++.|..
T Consensus 310 E~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 310 DQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 44444432 11 2345899999999999999988876
No 230
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.13 E-value=6.2e-10 Score=83.48 Aligned_cols=106 Identities=14% Similarity=0.086 Sum_probs=74.9
Q ss_pred CCCcchhhhhh-----------hHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 1 MTEGQERFTWM-----------TRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 1 Dt~G~e~~~~~-----------~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
||||..+-... .......+|+|++|+|.+.+.+-++.. ....+. ..+.++++|.||||+.+
T Consensus 232 DTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~-------~~g~~~vIvvNKWDl~~ 303 (444)
T COG1160 232 DTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLR-IAGLIE-------EAGRGIVIVVNKWDLVE 303 (444)
T ss_pred ECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHH-HHHHHH-------HcCCCeEEEEEccccCC
Confidence 78886554433 234567899999999999987766643 334442 25789999999999876
Q ss_pred C-CCCHH----HHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 70 R-QVDIN----DIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 70 ~-~~~~~----~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
. ....+ .+.......++.|.+++||+++.+++.+|..+.......
T Consensus 304 ~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~ 353 (444)
T COG1160 304 EDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYECA 353 (444)
T ss_pred chhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHHHh
Confidence 2 22222 333344455667899999999999999999887665543
No 231
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.11 E-value=8.6e-10 Score=77.77 Aligned_cols=60 Identities=17% Similarity=0.143 Sum_probs=48.6
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP 68 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 68 (142)
||||+.+|...+..+++.+|++++|+|..+..+... ..|+..+.. .++|+++++||+|+.
T Consensus 70 DTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~-~~~~~~~~~-------~~~P~iivvNK~D~~ 129 (237)
T cd04168 70 DTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQT-RILWRLLRK-------LNIPTIIFVNKIDRA 129 (237)
T ss_pred eCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH-------cCCCEEEEEECcccc
Confidence 899999999999999999999999999998755433 344444431 478999999999984
No 232
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.11 E-value=3.1e-10 Score=82.15 Aligned_cols=86 Identities=12% Similarity=0.058 Sum_probs=65.4
Q ss_pred hhccCCEEEEEEeCCChh-hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEee
Q psy10891 15 YYKDAHGCIIMFDLTNQN-SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETS 93 (142)
Q Consensus 15 ~~~~ad~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 93 (142)
.++++|++++|+|++++. ++..++.|+..+.. .++|+++|+||+|+.... .......+....+ .+++.+|
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~-------~~ip~iIVlNK~DL~~~~-~~~~~~~~~~~~g-~~v~~vS 145 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA-------AGIEPVIVLTKADLLDDE-EEELELVEALALG-YPVLAVS 145 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH-------cCCCEEEEEEHHHCCChH-HHHHHHHHHHhCC-CeEEEEE
Confidence 378999999999999887 88888889877641 478999999999986421 1112222334456 5799999
Q ss_pred ccCCCCHHHHHHHHHH
Q psy10891 94 TKEGLMVNDSMKFLLD 109 (142)
Q Consensus 94 a~~~~~i~~l~~~l~~ 109 (142)
|+++.|+++++..+..
T Consensus 146 A~~g~gi~~L~~~L~~ 161 (287)
T cd01854 146 AKTGEGLDELREYLKG 161 (287)
T ss_pred CCCCccHHHHHhhhcc
Confidence 9999999999988753
No 233
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.10 E-value=6.5e-10 Score=77.64 Aligned_cols=60 Identities=13% Similarity=0.202 Sum_probs=48.7
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP 68 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 68 (142)
||||+++|......+++.+|++++|+|+....+......|..... .++|+++|+||+|+.
T Consensus 79 DTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~--------~~~p~ilviNKiD~~ 138 (222)
T cd01885 79 DSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALK--------ERVKPVLVINKIDRL 138 (222)
T ss_pred CCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHH--------cCCCEEEEEECCCcc
Confidence 899999999999999999999999999998766554333322221 468999999999975
No 234
>KOG1145|consensus
Probab=99.09 E-value=2.9e-09 Score=81.54 Aligned_cols=102 Identities=12% Similarity=0.098 Sum_probs=75.0
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCCh---hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQ---NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDI 77 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~ 77 (142)
||||+..|..|+..-..-+|++++|+..+|. .+.+.+.. . ...++|+|+..||+|... -..+..
T Consensus 207 DTPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkh----A-------k~A~VpiVvAinKiDkp~--a~pekv 273 (683)
T KOG1145|consen 207 DTPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKH----A-------KSANVPIVVAINKIDKPG--ANPEKV 273 (683)
T ss_pred cCCcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHH----H-------HhcCCCEEEEEeccCCCC--CCHHHH
Confidence 8999999999999888899999999999985 34333221 1 226899999999999865 222222
Q ss_pred HHH-------HHHcCC-ceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 78 ECF-------YKEHNF-IGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 78 ~~~-------~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
..- ++.+|. .+.+.+||++|.|++.|-+.+..++---.
T Consensus 274 ~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~Ae~md 319 (683)
T KOG1145|consen 274 KRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLAEVMD 319 (683)
T ss_pred HHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHHHHHhh
Confidence 222 234432 46899999999999999988876665443
No 235
>CHL00071 tufA elongation factor Tu
Probab=99.08 E-value=1e-09 Score=83.02 Aligned_cols=91 Identities=12% Similarity=0.091 Sum_probs=63.4
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCC-CC---CCHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPH-RQ---VDIN 75 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~-~~---~~~~ 75 (142)
||||+.+|...+...+..+|++++|+|+.....-... ..+..+. ..++| +|++.||+|+.+ .. ....
T Consensus 81 DtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~-~~~~~~~-------~~g~~~iIvvvNK~D~~~~~~~~~~~~~ 152 (409)
T CHL00071 81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTK-EHILLAK-------QVGVPNIVVFLNKEDQVDDEELLELVEL 152 (409)
T ss_pred ECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHH-HHHHHHH-------HcCCCEEEEEEEccCCCCHHHHHHHHHH
Confidence 8999999988877788899999999999875433322 2222232 13678 778999999865 11 1223
Q ss_pred HHHHHHHHcCC----ceEEEeeccCCCC
Q psy10891 76 DIECFYKEHNF----IGWTETSTKEGLM 99 (142)
Q Consensus 76 ~~~~~~~~~~~----~~~~~~Sa~~~~~ 99 (142)
++..+++..++ .|++.+||.+|.+
T Consensus 153 ~l~~~l~~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 153 EVRELLSKYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred HHHHHHHHhCCCCCcceEEEcchhhccc
Confidence 45555666553 5799999999864
No 236
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.07 E-value=1.1e-09 Score=82.81 Aligned_cols=95 Identities=19% Similarity=0.111 Sum_probs=63.0
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CC-C---CHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQ-V---DIN 75 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~-~---~~~ 75 (142)
||||+++|...+...+..+|++++|+|+.....-...+.|..... . ...++|+++||+|+.. .. . ..+
T Consensus 86 DtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~--~-----~~~~iivviNK~D~~~~~~~~~~~i~~ 158 (406)
T TIGR02034 86 DTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASL--L-----GIRHVVLAVNKMDLVDYDEEVFENIKK 158 (406)
T ss_pred eCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHH--c-----CCCcEEEEEEecccccchHHHHHHHHH
Confidence 899999998777778899999999999987643333223321111 0 1235889999999864 11 0 112
Q ss_pred HHHHHHHHcCC--ceEEEeeccCCCCHHH
Q psy10891 76 DIECFYKEHNF--IGWTETSTKEGLMVND 102 (142)
Q Consensus 76 ~~~~~~~~~~~--~~~~~~Sa~~~~~i~~ 102 (142)
.+..+.+..++ .+++.+||.+|.|+.+
T Consensus 159 ~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 159 DYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 23333444443 3699999999999875
No 237
>PRK12288 GTPase RsgA; Reviewed
Probab=99.06 E-value=9.4e-10 Score=81.45 Aligned_cols=86 Identities=14% Similarity=0.090 Sum_probs=64.9
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC--CHHHHHHHHHHcCCceEEEee
Q psy10891 16 YKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV--DINDIECFYKEHNFIGWTETS 93 (142)
Q Consensus 16 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~S 93 (142)
..++|.+++|++.+...++..++.|+.... ..++|+++|+||+|+..... ............+ .+++++|
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~-------~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g-~~v~~vS 189 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACE-------TLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIG-YRVLMVS 189 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHH-------hcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCC-CeEEEEe
Confidence 467999999999988889999999987653 24689999999999965210 1112222334556 5699999
Q ss_pred ccCCCCHHHHHHHHHH
Q psy10891 94 TKEGLMVNDSMKFLLD 109 (142)
Q Consensus 94 a~~~~~i~~l~~~l~~ 109 (142)
|+++.|+++++..|..
T Consensus 190 A~tg~GideL~~~L~~ 205 (347)
T PRK12288 190 SHTGEGLEELEAALTG 205 (347)
T ss_pred CCCCcCHHHHHHHHhh
Confidence 9999999999998864
No 238
>PRK13351 elongation factor G; Reviewed
Probab=99.02 E-value=3.9e-09 Score=84.61 Aligned_cols=61 Identities=23% Similarity=0.332 Sum_probs=50.2
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
||||+.+|...+..+++.+|++++|+|+++..+......|. .+. ..++|+++++||+|+..
T Consensus 79 DtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~-~~~-------~~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 79 DTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWR-QAD-------RYGIPRLIFINKMDRVG 139 (687)
T ss_pred ECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHH-------hcCCCEEEEEECCCCCC
Confidence 89999999999999999999999999999877666555553 332 14789999999999854
No 239
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.02 E-value=5.4e-09 Score=73.55 Aligned_cols=50 Identities=26% Similarity=0.440 Sum_probs=38.7
Q ss_pred CCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 55 PIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 55 ~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
.+|+++|+||+|+.. .++...++.. .+++++||+++.|++++|..+.+.+
T Consensus 176 y~p~iiV~NK~Dl~~----~~~~~~~~~~---~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 176 YIPCLYVYNKIDLIS----IEELDLLARQ---PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred EeeEEEEEECccCCC----HHHHHHHhcC---CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 369999999999853 4444444443 3488999999999999999988754
No 240
>PRK00049 elongation factor Tu; Reviewed
Probab=99.01 E-value=2.7e-09 Score=80.47 Aligned_cols=90 Identities=12% Similarity=0.158 Sum_probs=60.9
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEE-EEEeCCCCCCC-CC---CHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCM-LLANKCDLPHR-QV---DIN 75 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~D~~~~-~~---~~~ 75 (142)
||||+.+|...+...+..+|++++|+|+..+..-.. ..++..+.. .++|++ +++||+|+.+. .. ...
T Consensus 81 DtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt-~~~~~~~~~-------~g~p~iiVvvNK~D~~~~~~~~~~~~~ 152 (396)
T PRK00049 81 DCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ-------VGVPYIVVFLNKCDMVDDEELLELVEM 152 (396)
T ss_pred ECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHH-HHHHHHHHH-------cCCCEEEEEEeecCCcchHHHHHHHHH
Confidence 899999998887778899999999999987543332 233333321 368875 58999998641 11 122
Q ss_pred HHHHHHHHcCC----ceEEEeeccCCC
Q psy10891 76 DIECFYKEHNF----IGWTETSTKEGL 98 (142)
Q Consensus 76 ~~~~~~~~~~~----~~~~~~Sa~~~~ 98 (142)
++..+....++ .|++.+||.++.
T Consensus 153 ~i~~~l~~~~~~~~~~~iv~iSa~~g~ 179 (396)
T PRK00049 153 EVRELLSKYDFPGDDTPIIRGSALKAL 179 (396)
T ss_pred HHHHHHHhcCCCccCCcEEEeeccccc
Confidence 34444554443 578999999875
No 241
>KOG0074|consensus
Probab=99.00 E-value=5.7e-10 Score=71.57 Aligned_cols=105 Identities=18% Similarity=0.198 Sum_probs=76.9
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
|.+||...+..|.-||.+.|++|+|+|.+|..-|+.+..-+.++. .......+|+++.+||.|+.. ....+.+..-
T Consensus 68 DiGGqr~IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELl---eeeKl~~vpvlIfankQdllt-aa~~eeia~k 143 (185)
T KOG0074|consen 68 DIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELL---EEEKLAEVPVLIFANKQDLLT-AAKVEEIALK 143 (185)
T ss_pred ecCCccccchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHh---hhhhhhccceeehhhhhHHHh-hcchHHHHHh
Confidence 788999999999999999999999999999888887665555554 333456899999999999875 1222222222
Q ss_pred HHHcCC----ceEEEeeccCCCCHHHHHHHHHH
Q psy10891 81 YKEHNF----IGWTETSTKEGLMVNDSMKFLLD 109 (142)
Q Consensus 81 ~~~~~~----~~~~~~Sa~~~~~i~~l~~~l~~ 109 (142)
+.-.++ -.+-+|||.+++|+.+-.+++..
T Consensus 144 lnl~~lrdRswhIq~csals~eg~~dg~~wv~s 176 (185)
T KOG0074|consen 144 LNLAGLRDRSWHIQECSALSLEGSTDGSDWVQS 176 (185)
T ss_pred cchhhhhhceEEeeeCccccccCccCcchhhhc
Confidence 111111 23668999999999888887764
No 242
>PRK13768 GTPase; Provisional
Probab=98.99 E-value=8e-09 Score=73.55 Aligned_cols=106 Identities=16% Similarity=0.084 Sum_probs=66.3
Q ss_pred CCCcchhh---hhhhHhhhcc-----CCEEEEEEeCCChhhHHHH--HHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC
Q psy10891 1 MTEGQERF---TWMTRVYYKD-----AHGCIIMFDLTNQNSFKNT--LKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR 70 (142)
Q Consensus 1 Dt~G~e~~---~~~~~~~~~~-----ad~ii~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 70 (142)
||||+..+ +..+..+++. ++++++|+|+....+..+. ..|+...... ..++|+++|+||+|+...
T Consensus 103 d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-----~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 103 DTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-----RLGLPQIPVLNKADLLSE 177 (253)
T ss_pred eCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-----HcCCCEEEEEEhHhhcCc
Confidence 89998774 3444444433 8999999999754333221 2333221111 147999999999998652
Q ss_pred CCCHHHHHH----------------------------HHHHcC-CceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 71 QVDINDIEC----------------------------FYKEHN-FIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 71 ~~~~~~~~~----------------------------~~~~~~-~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
.. .+.... ..+..+ ..+++.+|++++.|+++++++|.+.+.
T Consensus 178 ~~-~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 178 EE-LERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred hh-HHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 11 111111 112223 236899999999999999999988763
No 243
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.98 E-value=9e-09 Score=80.08 Aligned_cols=60 Identities=20% Similarity=0.144 Sum_probs=46.3
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP 68 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 68 (142)
||||+++|...+..+++.+|++|+|+|+++..... ...++.... ..++|+++++||+|+.
T Consensus 85 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~-------~~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 85 DTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVCR-------LRDTPIFTFINKLDRD 144 (526)
T ss_pred ECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHHH-------hcCCCEEEEEECCccc
Confidence 89999999998888999999999999998753322 233333332 2479999999999974
No 244
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.97 E-value=1.9e-09 Score=82.96 Aligned_cols=97 Identities=18% Similarity=0.034 Sum_probs=61.9
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCC-CH---H
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQV-DI---N 75 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~-~~---~ 75 (142)
||||+++|...+...+..+|++++|+|++....-...+.|..... . .-.|+|+++||+|+.. ... .. .
T Consensus 113 DTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~--l-----g~~~iIvvvNKiD~~~~~~~~~~~i~~ 185 (474)
T PRK05124 113 DTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATL--L-----GIKHLVVAVNKMDLVDYSEEVFERIRE 185 (474)
T ss_pred ECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHH--h-----CCCceEEEEEeeccccchhHHHHHHHH
Confidence 899999998766666799999999999987533222222221110 0 1247899999999864 111 11 1
Q ss_pred HHHHHHHHcC---CceEEEeeccCCCCHHHHH
Q psy10891 76 DIECFYKEHN---FIGWTETSTKEGLMVNDSM 104 (142)
Q Consensus 76 ~~~~~~~~~~---~~~~~~~Sa~~~~~i~~l~ 104 (142)
.+..+....+ ..+++.+||++|.|+.++-
T Consensus 186 ~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~ 217 (474)
T PRK05124 186 DYLTFAEQLPGNLDIRFVPLSALEGDNVVSQS 217 (474)
T ss_pred HHHHHHHhcCCCCCceEEEEEeecCCCccccc
Confidence 2222233333 3569999999999997653
No 245
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.97 E-value=3.2e-09 Score=70.28 Aligned_cols=90 Identities=14% Similarity=0.111 Sum_probs=56.9
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeec
Q psy10891 15 YYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETST 94 (142)
Q Consensus 15 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 94 (142)
.+.++|++++|+|+.++..... ..+...+.. ...++|+|+|.||+|+.++.........+.+.+.+. .+.+||
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~-~~i~~~l~~-----~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~-~~~iSa 77 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRC-KHVEEYLKK-----EKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTI-AFHASI 77 (157)
T ss_pred hhhhCCEEEEEEECCCCccccC-HHHHHHHHh-----ccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEE-EEEeec
Confidence 4678999999999998743221 222233321 124589999999999864211112222222222212 467899
Q ss_pred cCCCCHHHHHHHHHHHH
Q psy10891 95 KEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 95 ~~~~~i~~l~~~l~~~~ 111 (142)
+.+.|++++++.+...+
T Consensus 78 ~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 78 NNPFGKGSLIQLLRQFS 94 (157)
T ss_pred cccccHHHHHHHHHHHH
Confidence 99999999999987654
No 246
>COG2262 HflX GTPases [General function prediction only]
Probab=98.97 E-value=1.4e-08 Score=75.43 Aligned_cols=99 Identities=16% Similarity=0.108 Sum_probs=66.7
Q ss_pred hhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcC
Q psy10891 6 ERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHN 85 (142)
Q Consensus 6 e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~ 85 (142)
+.|.++.+.. ..||+++.|+|+++|.....+..-..-+. .-....+|+|+|.||+|+..... ... ......
T Consensus 260 ~AFksTLEE~-~~aDlllhVVDaSdp~~~~~~~~v~~vL~----el~~~~~p~i~v~NKiD~~~~~~---~~~-~~~~~~ 330 (411)
T COG2262 260 EAFKSTLEEV-KEADLLLHVVDASDPEILEKLEAVEDVLA----EIGADEIPIILVLNKIDLLEDEE---ILA-ELERGS 330 (411)
T ss_pred HHHHHHHHHh-hcCCEEEEEeecCChhHHHHHHHHHHHHH----HcCCCCCCEEEEEecccccCchh---hhh-hhhhcC
Confidence 4455555543 47999999999999965555443333331 22445699999999999765221 111 122221
Q ss_pred CceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 86 FIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 86 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
...+.+||+++.|++.|+..|...+...
T Consensus 331 -~~~v~iSA~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 331 -PNPVFISAKTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred -CCeEEEEeccCcCHHHHHHHHHHHhhhc
Confidence 1488899999999999999999888754
No 247
>PRK12740 elongation factor G; Reviewed
Probab=98.96 E-value=8.6e-09 Score=82.45 Aligned_cols=61 Identities=16% Similarity=0.252 Sum_probs=48.8
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
||||+.+|...+..++..+|++++|+|++...+......|. .+. ..++|+++|+||+|+..
T Consensus 66 DtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~-~~~-------~~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 66 DTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWR-QAE-------KYGVPRIIFVNKMDRAG 126 (668)
T ss_pred ECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHH-HHH-------HcCCCEEEEEECCCCCC
Confidence 89999999888889999999999999999876665544443 222 14789999999999753
No 248
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.96 E-value=7.7e-09 Score=69.41 Aligned_cols=98 Identities=17% Similarity=0.097 Sum_probs=66.3
Q ss_pred Cc-chhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHH
Q psy10891 3 EG-QERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFY 81 (142)
Q Consensus 3 ~G-~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~ 81 (142)
|| +.+........+++||++++|+|++.+.+... ..+...+ .+.|+++|.||+|+..... ......+.
T Consensus 3 ~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~~~---------~~k~~ilVlNK~Dl~~~~~-~~~~~~~~ 71 (171)
T cd01856 3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRN-PLLEKIL---------GNKPRIIVLNKADLADPKK-TKKWLKYF 71 (171)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCC-hhhHhHh---------cCCCEEEEEehhhcCChHH-HHHHHHHH
Confidence 44 45566667778899999999999987654322 1233332 3579999999999854210 11111222
Q ss_pred HHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 82 KEHNFIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 82 ~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
+..+ ..++.+||+++.|++++...+...+.
T Consensus 72 ~~~~-~~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 72 ESKG-EKVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred HhcC-CeEEEEECCCcccHHHHHHHHHHHHH
Confidence 3333 45789999999999999999988764
No 249
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.95 E-value=3.8e-09 Score=80.71 Aligned_cols=94 Identities=12% Similarity=0.051 Sum_probs=63.6
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChh-------hHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCC---
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQN-------SFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPH--- 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~-------s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~--- 69 (142)
||||+++|...+......+|++++|+|++... .-...+.|.... ..++| +|++.||+|...
T Consensus 91 DtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~--------~~gi~~iiv~vNKmD~~~~~~ 162 (446)
T PTZ00141 91 DAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAF--------TLGVKQMIVCINKMDDKTVNY 162 (446)
T ss_pred ECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHH--------HcCCCeEEEEEEccccccchh
Confidence 89999999998888889999999999998642 011222332211 13676 679999999421
Q ss_pred ----CCCCHHHHHHHHHHcCC----ceEEEeeccCCCCHHH
Q psy10891 70 ----RQVDINDIECFYKEHNF----IGWTETSTKEGLMVND 102 (142)
Q Consensus 70 ----~~~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~ 102 (142)
......++..++...++ .+++.+|+.+|.|+.+
T Consensus 163 ~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 163 SQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 01123344444555554 5689999999999854
No 250
>PLN03127 Elongation factor Tu; Provisional
Probab=98.94 E-value=7.3e-09 Score=79.19 Aligned_cols=103 Identities=12% Similarity=0.087 Sum_probs=63.6
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCCCCCCH----H
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPHRQVDI----N 75 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~~----~ 75 (142)
||||+++|...+......+|++++|+|++....-.. ...+..+. ..++| +|++.||+|+.+..... .
T Consensus 130 DtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~-------~~gip~iIvviNKiDlv~~~~~~~~i~~ 201 (447)
T PLN03127 130 DCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLAR-------QVGVPSLVVFLNKVDVVDDEELLELVEM 201 (447)
T ss_pred ECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHH-------HcCCCeEEEEEEeeccCCHHHHHHHHHH
Confidence 899999998777667778999999999987543332 22222222 13688 57899999986411111 1
Q ss_pred HHHHHHHHcCC----ceEEEeecc---CCCC-------HHHHHHHHHHHH
Q psy10891 76 DIECFYKEHNF----IGWTETSTK---EGLM-------VNDSMKFLLDVL 111 (142)
Q Consensus 76 ~~~~~~~~~~~----~~~~~~Sa~---~~~~-------i~~l~~~l~~~~ 111 (142)
++..+....++ .|++.+|+. ++.+ +..|++.+...+
T Consensus 202 ~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 202 ELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred HHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 23333333332 568888776 4444 556666665554
No 251
>PLN03126 Elongation factor Tu; Provisional
Probab=98.91 E-value=1.6e-08 Score=77.88 Aligned_cols=91 Identities=11% Similarity=0.012 Sum_probs=62.3
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCCC-C---CCHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPHR-Q---VDIN 75 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~-~---~~~~ 75 (142)
||||+++|...+-..+..+|++++|+|+.+.......+ ++..+. ..++| +|+++||+|+.+. . ...+
T Consensus 150 DtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e-~~~~~~-------~~gi~~iIvvvNK~Dl~~~~~~~~~i~~ 221 (478)
T PLN03126 150 DCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKE-HILLAK-------QVGVPNMVVFLNKQDQVDDEELLELVEL 221 (478)
T ss_pred ECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHH-HHHHHH-------HcCCCeEEEEEecccccCHHHHHHHHHH
Confidence 89999999888877788999999999998764433323 333332 13678 7889999998641 1 1122
Q ss_pred HHHHHHHHcC----CceEEEeeccCCCC
Q psy10891 76 DIECFYKEHN----FIGWTETSTKEGLM 99 (142)
Q Consensus 76 ~~~~~~~~~~----~~~~~~~Sa~~~~~ 99 (142)
++..+.+..+ ..|++.+|+.++.+
T Consensus 222 ~i~~~l~~~g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 222 EVRELLSSYEFPGDDIPIISGSALLALE 249 (478)
T ss_pred HHHHHHHhcCCCcCcceEEEEEcccccc
Confidence 4445555543 25789999998853
No 252
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.90 E-value=4.6e-09 Score=77.74 Aligned_cols=112 Identities=14% Similarity=0.127 Sum_probs=76.7
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCCh----------hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQ----------NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH- 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~- 69 (142)
|++||..++..|..|+.+++++|||+|+++- ..+......+..+. +...-.++|++|++||.|+..
T Consensus 190 DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~---~~~~~~~~piil~~NK~D~~~~ 266 (342)
T smart00275 190 DVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESIC---NSRWFANTSIILFLNKIDLFEE 266 (342)
T ss_pred ecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHH---cCccccCCcEEEEEecHHhHHH
Confidence 7899999999999999999999999999862 23444444444443 333346799999999999733
Q ss_pred --CC-------------CCHHHHHHH----HHHc------CCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 70 --RQ-------------VDINDIECF----YKEH------NFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 70 --~~-------------~~~~~~~~~----~~~~------~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
.. ...+....+ +... .......+||.+-.++..+|+.+...++.+.
T Consensus 267 Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~ 337 (342)
T smart00275 267 KIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN 337 (342)
T ss_pred HhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence 00 111222222 1111 1122457889999999999999998888764
No 253
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.88 E-value=7.7e-09 Score=82.23 Aligned_cols=95 Identities=22% Similarity=0.144 Sum_probs=62.3
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CC-CC---HH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQ-VD---IN 75 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~-~~---~~ 75 (142)
||||+++|...+...+..+|++++|+|++....-...+.+. .+... ...++|+++||+|+.+ .. .. ..
T Consensus 110 DtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~-~~~~~------~~~~iivvvNK~D~~~~~~~~~~~i~~ 182 (632)
T PRK05506 110 DTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSF-IASLL------GIRHVVLAVNKMDLVDYDQEVFDEIVA 182 (632)
T ss_pred ECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHH-HHHHh------CCCeEEEEEEecccccchhHHHHHHHH
Confidence 89999999877767788999999999998654322222222 11100 2357889999999863 11 11 12
Q ss_pred HHHHHHHHcCC--ceEEEeeccCCCCHHH
Q psy10891 76 DIECFYKEHNF--IGWTETSTKEGLMVND 102 (142)
Q Consensus 76 ~~~~~~~~~~~--~~~~~~Sa~~~~~i~~ 102 (142)
.+..+.+..++ .+++.+||++|.|+.+
T Consensus 183 ~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 183 DYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 22333445554 3589999999999874
No 254
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.87 E-value=7.8e-09 Score=74.24 Aligned_cols=61 Identities=20% Similarity=0.220 Sum_probs=47.1
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
||||+.+|...+..+++.+|++++|+|+.+...-... .++..+. ..++|+++++||+|+..
T Consensus 70 DTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~-~~~~~~~-------~~~~p~ivviNK~D~~~ 130 (270)
T cd01886 70 DTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQTE-TVWRQAD-------RYNVPRIAFVNKMDRTG 130 (270)
T ss_pred ECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHHH-HHHHHHH-------HcCCCEEEEEECCCCCC
Confidence 8999999999999999999999999999875433322 2333332 14689999999999864
No 255
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.87 E-value=2.1e-08 Score=72.22 Aligned_cols=90 Identities=19% Similarity=0.187 Sum_probs=63.0
Q ss_pred hhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH---HHHcCC
Q psy10891 10 WMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF---YKEHNF 86 (142)
Q Consensus 10 ~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~---~~~~~~ 86 (142)
......+..+|++++|+|+..+.+... .++..+. .+.|+|+|.||+|+.+. .....| .+..+
T Consensus 13 ~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l--------~~kp~IiVlNK~DL~~~----~~~~~~~~~~~~~~- 77 (276)
T TIGR03596 13 REIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR--------GNKPRLIVLNKADLADP----AVTKQWLKYFEEKG- 77 (276)
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH--------CCCCEEEEEEccccCCH----HHHHHHHHHHHHcC-
Confidence 345667889999999999988755433 1222221 36799999999998541 222222 23334
Q ss_pred ceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 87 IGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 87 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
.+++.+||+++.|+.+++..+...+.+.
T Consensus 78 ~~vi~iSa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 78 IKALAINAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred CeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence 4588999999999999999988877543
No 256
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.87 E-value=2e-08 Score=66.34 Aligned_cols=84 Identities=11% Similarity=-0.033 Sum_probs=55.4
Q ss_pred CEEEEEEeCCChhhHHHHHHHHH-HHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCCC
Q psy10891 20 HGCIIMFDLTNQNSFKNTLKWKK-DVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGL 98 (142)
Q Consensus 20 d~ii~v~d~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 98 (142)
|++++|+|+.++.+... .|+. ... ...++|+|+|+||+|+.......+....+.... ..+++.+||+++.
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~------~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~-~~~ii~vSa~~~~ 71 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLI------KEKGKKLILVLNKADLVPKEVLRKWLAYLRHSY-PTIPFKISATNGQ 71 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHH------hcCCCCEEEEEechhcCCHHHHHHHHHHHHhhC-CceEEEEeccCCc
Confidence 78999999998865543 2333 111 124789999999999854110011111222222 3557899999999
Q ss_pred CHHHHHHHHHHHHH
Q psy10891 99 MVNDSMKFLLDVLM 112 (142)
Q Consensus 99 ~i~~l~~~l~~~~~ 112 (142)
|+++++..+.....
T Consensus 72 gi~~L~~~i~~~~~ 85 (155)
T cd01849 72 GIEKKESAFTKQTN 85 (155)
T ss_pred ChhhHHHHHHHHhH
Confidence 99999999877643
No 257
>PRK13796 GTPase YqeH; Provisional
Probab=98.86 E-value=3.8e-08 Score=73.55 Aligned_cols=94 Identities=17% Similarity=0.206 Sum_probs=63.9
Q ss_pred hhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH----HH
Q psy10891 7 RFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF----YK 82 (142)
Q Consensus 7 ~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~----~~ 82 (142)
.|..+....-...+++++|+|+.+.. ..|...+.+.. .+.|+++|+||+|+..+....+.+..| ++
T Consensus 58 ~~~~~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k 127 (365)
T PRK13796 58 DFLKLLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAK 127 (365)
T ss_pred HHHHHHHhhcccCcEEEEEEECccCC-----CchhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHHH
Confidence 45454444433344999999998753 23555554333 468999999999997644444444444 45
Q ss_pred HcCCc--eEEEeeccCCCCHHHHHHHHHHH
Q psy10891 83 EHNFI--GWTETSTKEGLMVNDSMKFLLDV 110 (142)
Q Consensus 83 ~~~~~--~~~~~Sa~~~~~i~~l~~~l~~~ 110 (142)
..++. .++.+||+++.|+++++..+...
T Consensus 128 ~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 128 ELGLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred hcCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 55642 47899999999999999998654
No 258
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.86 E-value=5.9e-08 Score=65.97 Aligned_cols=99 Identities=12% Similarity=0.176 Sum_probs=71.0
Q ss_pred chhhhhhhHhhhc---cCCEEEEEEeCCChhhHHHH--HHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHH
Q psy10891 5 QERFTWMTRVYYK---DAHGCIIMFDLTNQNSFKNT--LKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIEC 79 (142)
Q Consensus 5 ~e~~~~~~~~~~~---~ad~ii~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~ 79 (142)
++++..++..|+. +..++++++|+..+..-.+. -.|+.. .++|+++++||+|..........+..
T Consensus 90 ~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~----------~~i~~~vv~tK~DKi~~~~~~k~l~~ 159 (200)
T COG0218 90 KEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLE----------LGIPVIVVLTKADKLKKSERNKQLNK 159 (200)
T ss_pred HHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHH----------cCCCeEEEEEccccCChhHHHHHHHH
Confidence 7888888898985 46788999999988665443 245444 38999999999998763333333344
Q ss_pred HHHHcCC----ce-EEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 80 FYKEHNF----IG-WTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 80 ~~~~~~~----~~-~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
.++..+. .+ ++.+|+.++.|++++...|...+..
T Consensus 160 v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 160 VAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred HHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 4443332 11 6778999999999999999887643
No 259
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.84 E-value=2e-08 Score=63.23 Aligned_cols=97 Identities=20% Similarity=0.157 Sum_probs=71.9
Q ss_pred CCCc----chhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHH
Q psy10891 1 MTEG----QERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDIND 76 (142)
Q Consensus 1 Dt~G----~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~ 76 (142)
|||| +.++.+-.-....++|++++|-.++++.|--. ..+. .....|+|-|++|.|+.+ ....+.
T Consensus 43 DTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~-----p~f~------~~~~k~vIgvVTK~DLae-d~dI~~ 110 (148)
T COG4917 43 DTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFP-----PGFL------DIGVKKVIGVVTKADLAE-DADISL 110 (148)
T ss_pred CCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCC-----cccc------cccccceEEEEecccccc-hHhHHH
Confidence 7888 44444444445679999999999998754221 1111 113567999999999975 345667
Q ss_pred HHHHHHHcCCceEEEeeccCCCCHHHHHHHHHH
Q psy10891 77 IECFYKEHNFIGWTETSTKEGLMVNDSMKFLLD 109 (142)
Q Consensus 77 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 109 (142)
..+|..+-|..++|.+|+.++.|++++++.|..
T Consensus 111 ~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 111 VKRWLREAGAEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred HHHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence 778888888888999999999999999988754
No 260
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.83 E-value=7.4e-09 Score=75.98 Aligned_cols=112 Identities=15% Similarity=0.108 Sum_probs=76.4
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCCh----------hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQ----------NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR 70 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 70 (142)
|++||...+..|..|+.++++++||+|+++- ..+......+..+. +...-.++|++|++||.|+...
T Consensus 167 DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~---~~~~~~~~pill~~NK~D~f~~ 243 (317)
T cd00066 167 DVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSIC---NSRWFANTSIILFLNKKDLFEE 243 (317)
T ss_pred CCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHH---hCccccCCCEEEEccChHHHHH
Confidence 8999999999999999999999999999863 33444334444443 2223368999999999996320
Q ss_pred -----------------CCCHHHHHHHH----HH-c----CCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 71 -----------------QVDINDIECFY----KE-H----NFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 71 -----------------~~~~~~~~~~~----~~-~----~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
.-..+....+. .. . ..+....++|.+..++..+|+.+...++...
T Consensus 244 ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~ 314 (317)
T cd00066 244 KIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN 314 (317)
T ss_pred hhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence 11122222221 11 1 1122456899999999999999999888764
No 261
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.82 E-value=3e-08 Score=74.76 Aligned_cols=100 Identities=15% Similarity=0.096 Sum_probs=68.8
Q ss_pred CCCcchhhhhh--------hHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC
Q psy10891 1 MTEGQERFTWM--------TRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV 72 (142)
Q Consensus 1 Dt~G~e~~~~~--------~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~ 72 (142)
||||...-... ....+.+||++++|+|.+.+.+-.+.. .+..+ ..+.|+++|.||.|+.....
T Consensus 271 DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~-~~~~~--------~~~~~~i~v~NK~DL~~~~~ 341 (454)
T COG0486 271 DTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLA-LIELL--------PKKKPIIVVLNKADLVSKIE 341 (454)
T ss_pred ecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHH-HHHhc--------ccCCCEEEEEechhcccccc
Confidence 89996643332 244568999999999999863333322 22222 25799999999999976221
Q ss_pred CHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 73 DINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
.... +...-.+++.+|++++.|++.|...|...+...
T Consensus 342 ----~~~~-~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 342 ----LESE-KLANGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred ----cchh-hccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 1111 122223589999999999999999999888766
No 262
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.81 E-value=4.7e-08 Score=70.12 Aligned_cols=76 Identities=18% Similarity=0.135 Sum_probs=52.2
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|...+..+++.+|++++|+|+++...... ..++.... ..++|+++++||+|+... ........+
T Consensus 77 DTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~-~~i~~~~~-------~~~~P~iivvNK~D~~~a-~~~~~~~~l 147 (267)
T cd04169 77 DTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQT-RKLFEVCR-------LRGIPIITFINKLDREGR-DPLELLDEI 147 (267)
T ss_pred ECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHH-HHHHHHHH-------hcCCCEEEEEECCccCCC-CHHHHHHHH
Confidence 899999999888888999999999999987543222 23333332 147899999999998542 122223444
Q ss_pred HHHcC
Q psy10891 81 YKEHN 85 (142)
Q Consensus 81 ~~~~~ 85 (142)
...++
T Consensus 148 ~~~l~ 152 (267)
T cd04169 148 EEELG 152 (267)
T ss_pred HHHHC
Confidence 44444
No 263
>PRK12739 elongation factor G; Reviewed
Probab=98.80 E-value=8.7e-08 Score=77.01 Aligned_cols=61 Identities=21% Similarity=0.319 Sum_probs=47.7
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
||||+.+|...+...++.+|++++|+|+...........| ..+. ..++|+|+++||+|+..
T Consensus 79 DTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~-~~~~-------~~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 79 DTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVW-RQAD-------KYGVPRIVFVNKMDRIG 139 (691)
T ss_pred cCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHH-HHHH-------HcCCCEEEEEECCCCCC
Confidence 8999999998899999999999999999876544443333 2232 14689999999999853
No 264
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.78 E-value=2.8e-08 Score=72.69 Aligned_cols=93 Identities=17% Similarity=0.103 Sum_probs=64.1
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CC----CCH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQ----VDI 74 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~----~~~ 74 (142)
||||||.|.+.+-.-...||++|+++|+.....-+.-+ .++..+. .=..+++..||+||.+ .+ .-.
T Consensus 92 DTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLL--------GIrhvvvAVNKmDLvdy~e~~F~~I~ 163 (431)
T COG2895 92 DTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLL--------GIRHVVVAVNKMDLVDYSEEVFEAIV 163 (431)
T ss_pred cCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHh--------CCcEEEEEEeeecccccCHHHHHHHH
Confidence 89999999999888888999999999997542111111 2223332 2245899999999987 21 123
Q ss_pred HHHHHHHHHcCCc--eEEEeeccCCCCHH
Q psy10891 75 NDIECFYKEHNFI--GWTETSTKEGLMVN 101 (142)
Q Consensus 75 ~~~~~~~~~~~~~--~~~~~Sa~~~~~i~ 101 (142)
.+...++..+++. .++.+||..|.|+-
T Consensus 164 ~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 164 ADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHcCCCcceEEechhccCCccc
Confidence 3344567777753 48899999998863
No 265
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.76 E-value=5.6e-08 Score=75.73 Aligned_cols=59 Identities=22% Similarity=0.229 Sum_probs=45.0
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDL 67 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 67 (142)
||||+.+|......+++.+|++|+|+|+.+...-. ...++.... ..++|+++++||+|+
T Consensus 86 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~-------~~~~PiivviNKiD~ 144 (527)
T TIGR00503 86 DTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETR-TRKLMEVTR-------LRDTPIFTFMNKLDR 144 (527)
T ss_pred ECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHH-------hcCCCEEEEEECccc
Confidence 89999999987777899999999999998752211 233443332 147899999999997
No 266
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.74 E-value=5.1e-08 Score=63.41 Aligned_cols=76 Identities=20% Similarity=0.196 Sum_probs=50.5
Q ss_pred HhhhccCCEEEEEEeCCChhhHH--HHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEE
Q psy10891 13 RVYYKDAHGCIIMFDLTNQNSFK--NTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWT 90 (142)
Q Consensus 13 ~~~~~~ad~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 90 (142)
...+.++|++++|+|+.++.+.. .+..|+... . .++|+++|+||+|+..+. .......+++..+ .+++
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~-------~-~~k~~iivlNK~DL~~~~-~~~~~~~~~~~~~-~~ii 75 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV-------D-PRKKNILLLNKADLLTEE-QRKAWAEYFKKEG-IVVV 75 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc-------c-CCCcEEEEEechhcCCHH-HHHHHHHHHHhcC-CeEE
Confidence 34678999999999999886544 233343322 1 478999999999985421 1122334455555 4688
Q ss_pred EeeccCCC
Q psy10891 91 ETSTKEGL 98 (142)
Q Consensus 91 ~~Sa~~~~ 98 (142)
++||.++.
T Consensus 76 ~iSa~~~~ 83 (141)
T cd01857 76 FFSALKEN 83 (141)
T ss_pred EEEecCCC
Confidence 99998875
No 267
>KOG1489|consensus
Probab=98.74 E-value=1.2e-07 Score=68.55 Aligned_cols=91 Identities=20% Similarity=0.287 Sum_probs=66.3
Q ss_pred hccCCEEEEEEeCCCh---hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEe
Q psy10891 16 YKDAHGCIIMFDLTNQ---NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTET 92 (142)
Q Consensus 16 ~~~ad~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (142)
++.++.++||+|++.+ ..++.++.+..++..+- ....+.|.++|+||+|+.+ -....+..+++......++.+
T Consensus 272 iER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~ye--k~L~~rp~liVaNKiD~~e--ae~~~l~~L~~~lq~~~V~pv 347 (366)
T KOG1489|consen 272 IERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYE--KGLADRPALIVANKIDLPE--AEKNLLSSLAKRLQNPHVVPV 347 (366)
T ss_pred HHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHh--hhhccCceEEEEeccCchh--HHHHHHHHHHHHcCCCcEEEe
Confidence 4689999999999988 66777666666654221 1235789999999999853 112234667777663348999
Q ss_pred eccCCCCHHHHHHHHHHH
Q psy10891 93 STKEGLMVNDSMKFLLDV 110 (142)
Q Consensus 93 Sa~~~~~i~~l~~~l~~~ 110 (142)
||++++++.+++..|...
T Consensus 348 sA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 348 SAKSGEGLEELLNGLREL 365 (366)
T ss_pred eeccccchHHHHHHHhhc
Confidence 999999999999887643
No 268
>KOG1423|consensus
Probab=98.73 E-value=6.4e-08 Score=69.68 Aligned_cols=91 Identities=14% Similarity=0.121 Sum_probs=57.5
Q ss_pred hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCC--------CHHH----HHHH
Q psy10891 14 VYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQV--------DIND----IECF 80 (142)
Q Consensus 14 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~--------~~~~----~~~~ 80 (142)
..+..||++++|+|+++....-. ...+..+..+ ..+|-|||.||.|... +.+ +... ...+
T Consensus 151 ~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y------s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v 223 (379)
T KOG1423|consen 151 DAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY------SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEV 223 (379)
T ss_pred HHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH------hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhH
Confidence 34678999999999996322111 1223333322 3799999999999754 111 1001 1122
Q ss_pred HHHcCCc----------------eEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 81 YKEHNFI----------------GWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 81 ~~~~~~~----------------~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
.+++... .+|++||++|.||+++.+.|..++
T Consensus 224 ~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa 270 (379)
T KOG1423|consen 224 QEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA 270 (379)
T ss_pred HHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcC
Confidence 3332222 389999999999999999888766
No 269
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.73 E-value=7.2e-08 Score=77.47 Aligned_cols=88 Identities=13% Similarity=0.164 Sum_probs=59.9
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+.+|...+..+++.+|++++|+|+.+.........| ..+. ..++|+++++||+|+.... .......+
T Consensus 81 DTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~-------~~~~p~ivviNK~D~~~~~-~~~~~~~i 151 (689)
T TIGR00484 81 DTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQAN-------RYEVPRIAFVNKMDKTGAN-FLRVVNQI 151 (689)
T ss_pred ECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHH-------HcCCCEEEEEECCCCCCCC-HHHHHHHH
Confidence 8999999998889999999999999999986655543333 3332 1468999999999986521 22334444
Q ss_pred HHHcCCce---EEEeeccCC
Q psy10891 81 YKEHNFIG---WTETSTKEG 97 (142)
Q Consensus 81 ~~~~~~~~---~~~~Sa~~~ 97 (142)
...++..+ .+.+|+..+
T Consensus 152 ~~~l~~~~~~~~ipis~~~~ 171 (689)
T TIGR00484 152 KQRLGANAVPIQLPIGAEDN 171 (689)
T ss_pred HHHhCCCceeEEeccccCCC
Confidence 45444322 344555444
No 270
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.71 E-value=1.2e-07 Score=68.71 Aligned_cols=89 Identities=20% Similarity=0.185 Sum_probs=62.8
Q ss_pred hhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH---HHHcCCc
Q psy10891 11 MTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF---YKEHNFI 87 (142)
Q Consensus 11 ~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~---~~~~~~~ 87 (142)
.....+..+|++++|+|+..+.+... .++.... .+.|+++|.||+|+.+. .....| .+..+ .
T Consensus 17 ~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~--------~~kp~iiVlNK~DL~~~----~~~~~~~~~~~~~~-~ 81 (287)
T PRK09563 17 EIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII--------GNKPRLLILNKSDLADP----EVTKKWIEYFEEQG-I 81 (287)
T ss_pred HHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh--------CCCCEEEEEEchhcCCH----HHHHHHHHHHHHcC-C
Confidence 34567789999999999988755433 2233332 36899999999998531 222223 23334 4
Q ss_pred eEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 88 GWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 88 ~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
+++.+|++++.|+.+++..+...+.+.
T Consensus 82 ~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 82 KALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 588999999999999999988877654
No 271
>KOG0077|consensus
Probab=98.66 E-value=8.5e-08 Score=63.18 Aligned_cols=106 Identities=14% Similarity=0.198 Sum_probs=74.9
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
|.+|+..=+..|..|+..+|++++++|+-+.+-|...+.-+..+. .......+|+++.+||+|... ...+++..-.
T Consensus 70 DLGGH~qArr~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll---~~e~la~vp~lilgnKId~p~-a~se~~l~~~ 145 (193)
T KOG0077|consen 70 DLGGHLQARRVWKDYFPQVDAIVYLVDAYDQERFAESKKELDALL---SDESLATVPFLILGNKIDIPY-AASEDELRFH 145 (193)
T ss_pred ccccHHHHHHHHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHH---hHHHHhcCcceeecccccCCC-cccHHHHHHH
Confidence 678888888999999999999999999999988877665554444 222346899999999999865 2233333221
Q ss_pred ---HHHcC-----------C--ceEEEeeccCCCCHHHHHHHHHHH
Q psy10891 81 ---YKEHN-----------F--IGWTETSTKEGLMVNDSMKFLLDV 110 (142)
Q Consensus 81 ---~~~~~-----------~--~~~~~~Sa~~~~~i~~l~~~l~~~ 110 (142)
....+ . ..+++||...+.+-.+.|.++..+
T Consensus 146 l~l~~~t~~~~~v~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 146 LGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred HHHHHHhcccccccccCCCCCeEEEEEEEEEccCccceeeeehhhh
Confidence 11111 1 236788988888877777776544
No 272
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.65 E-value=5.8e-07 Score=61.66 Aligned_cols=104 Identities=15% Similarity=0.070 Sum_probs=63.6
Q ss_pred CCCcchhhhhhhHhh-----hccCCEEEEEEeCCChhhHHHH-HHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC--CC-
Q psy10891 1 MTEGQERFTWMTRVY-----YKDAHGCIIMFDLTNQNSFKNT-LKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH--RQ- 71 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~-----~~~ad~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~--~~- 71 (142)
||||..........| +.++|++++|.+. . +... ..|+..+.. .+.|+++|+||+|+.. ..
T Consensus 58 DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~-~---~~~~d~~~~~~l~~-------~~~~~ilV~nK~D~~~~~~~~ 126 (197)
T cd04104 58 DLPGIGSTAFPPDDYLEEMKFSEYDFFIIISST-R---FSSNDVKLAKAIQC-------MGKKFYFVRTKVDRDLSNEQR 126 (197)
T ss_pred eCCCCCcccCCHHHHHHHhCccCcCEEEEEeCC-C---CCHHHHHHHHHHHH-------hCCCEEEEEecccchhhhhhc
Confidence 789975433322233 6788999998543 2 2222 345555532 2579999999999853 10
Q ss_pred ---------CCHHHHHHHH----HHc--CCceEEEeecc--CCCCHHHHHHHHHHHHHHHh
Q psy10891 72 ---------VDINDIECFY----KEH--NFIGWTETSTK--EGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 72 ---------~~~~~~~~~~----~~~--~~~~~~~~Sa~--~~~~i~~l~~~l~~~~~~~~ 115 (142)
...+.+...+ ... ...++|.+|+. .+.++..+.+.+...+.+++
T Consensus 127 ~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 127 SKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK 187 (197)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence 0011111112 221 22458899998 56899999999999998764
No 273
>KOG1707|consensus
Probab=98.64 E-value=6.7e-08 Score=74.49 Aligned_cols=101 Identities=13% Similarity=0.125 Sum_probs=72.5
Q ss_pred HhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHH-HHHHHHHcC-Cce
Q psy10891 13 RVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDIND-IECFYKEHN-FIG 88 (142)
Q Consensus 13 ~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~-~~~~~~~~~-~~~ 88 (142)
..-++.||++.++|+++++.|.+.+. .|+..+.+.. ....++|+||||||+|... .....+. ..-+..++. +--
T Consensus 74 ~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~--~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEt 151 (625)
T KOG1707|consen 74 RKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLF--GDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIET 151 (625)
T ss_pred HHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhccc--CCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHH
Confidence 55678999999999999999999865 8999995211 1225799999999999876 2221122 223333332 112
Q ss_pred EEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 89 WTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 89 ~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
-++|||++-.++.++|.-..+.++...
T Consensus 152 ciecSA~~~~n~~e~fYyaqKaVihPt 178 (625)
T KOG1707|consen 152 CIECSALTLANVSELFYYAQKAVIHPT 178 (625)
T ss_pred HHhhhhhhhhhhHhhhhhhhheeeccC
Confidence 678999999999999988877776644
No 274
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.63 E-value=1.8e-07 Score=70.77 Aligned_cols=107 Identities=18% Similarity=0.229 Sum_probs=73.4
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-C--CCCHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-R--QVDINDI 77 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~--~~~~~~~ 77 (142)
|||||-+|..-.+..+.-.|++++++|+...+--+.-...-+.+. .+.+.|+|.||+|... + .+-.+..
T Consensus 74 DTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~--------~gL~PIVVvNKiDrp~Arp~~Vvd~vf 145 (603)
T COG1217 74 DTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALA--------LGLKPIVVINKIDRPDARPDEVVDEVF 145 (603)
T ss_pred cCCCcCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHH--------cCCCcEEEEeCCCCCCCCHHHHHHHHH
Confidence 899999999999999999999999999987543222112223332 4677789999999876 2 1222222
Q ss_pred HHHH------HHcCCceEEEeeccCCC----------CHHHHHHHHHHHHHHHhC
Q psy10891 78 ECFY------KEHNFIGWTETSTKEGL----------MVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 78 ~~~~------~~~~~~~~~~~Sa~~~~----------~i~~l~~~l~~~~~~~~~ 116 (142)
..|. .++. .|+++.|+..|. ++..||+.|+.++.....
T Consensus 146 DLf~~L~A~deQLd-FPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~ 199 (603)
T COG1217 146 DLFVELGATDEQLD-FPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKG 199 (603)
T ss_pred HHHHHhCCChhhCC-CcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCC
Confidence 2222 2233 468888988873 577888888888866543
No 275
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.61 E-value=1.9e-07 Score=63.12 Aligned_cols=68 Identities=21% Similarity=0.299 Sum_probs=44.8
Q ss_pred CCCcchhhhhhh-Hh--hhccCCEEEEEEeCCC-hhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 1 MTEGQERFTWMT-RV--YYKDAHGCIIMFDLTN-QNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 1 Dt~G~e~~~~~~-~~--~~~~ad~ii~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
|+||+++.+... .. +...+-+||||+|.+. +....++.+++-.+..... .....+|++|++||.|+..
T Consensus 55 D~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~-~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 55 DIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTE-VQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp EETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHH-CCTT--EEEEEEE-TTSTT
T ss_pred ECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhh-hccCCCCEEEEEeCccccc
Confidence 899999988744 33 4789999999999974 3455555555544443221 1246799999999999865
No 276
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.59 E-value=6.8e-07 Score=64.10 Aligned_cols=98 Identities=16% Similarity=0.152 Sum_probs=63.7
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+.+|...+..++..+|++++|+|++..........|. .+. ..++|+++++||+|.... ........+
T Consensus 70 DtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~-------~~~~p~iivvNK~D~~~~-~~~~~~~~l 140 (268)
T cd04170 70 DTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWE-FAD-------EAGIPRIIFINKMDRERA-DFDKTLAAL 140 (268)
T ss_pred ECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHH-------HcCCCEEEEEECCccCCC-CHHHHHHHH
Confidence 89999999888899999999999999999875554433332 221 146899999999998642 223344445
Q ss_pred HHHcCCce-EEEeeccCCCCHHHHHHHH
Q psy10891 81 YKEHNFIG-WTETSTKEGLMVNDSMKFL 107 (142)
Q Consensus 81 ~~~~~~~~-~~~~Sa~~~~~i~~l~~~l 107 (142)
...++... .+.+...++.++..+.+.+
T Consensus 141 ~~~~~~~~~~~~ip~~~~~~~~~~vd~~ 168 (268)
T cd04170 141 QEAFGRPVVPLQLPIGEGDDFKGVVDLL 168 (268)
T ss_pred HHHhCCCeEEEEecccCCCceeEEEEcc
Confidence 45555321 2334455555544443333
No 277
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.58 E-value=1.6e-07 Score=66.34 Aligned_cols=105 Identities=12% Similarity=0.071 Sum_probs=56.6
Q ss_pred CCCcchhhhhhhHhhh--------ccCCEEEEEEeCCCh---hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 1 MTEGQERFTWMTRVYY--------KDAHGCIIMFDLTNQ---NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~--------~~ad~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
|||||.++...|.... ...-++++++|+... ..|-. .++-.+....+ -+.|.|.|.||+|+..
T Consensus 97 DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s--~~L~s~s~~~~----~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 97 DTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVS--SLLLSLSIMLR----LELPHVNVLSKIDLLS 170 (238)
T ss_dssp E--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHH--HHHHHHHHHHH----HTSEEEEEE--GGGS-
T ss_pred eCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHH--HHHHHHHHHhh----CCCCEEEeeeccCccc
Confidence 8999999988776655 567789999998643 33332 33222211110 3799999999999965
Q ss_pred CC--------C------------CHHHHHHHH---HHcCCc-eEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 70 RQ--------V------------DINDIECFY---KEHNFI-GWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 70 ~~--------~------------~~~~~~~~~---~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
.. . .......++ ..++.. .++.+|+.++.++.+++..+-+.+
T Consensus 171 ~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 171 KYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred chhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 11 0 011111222 233444 689999999999999998776543
No 278
>KOG1144|consensus
Probab=98.58 E-value=3.9e-07 Score=72.31 Aligned_cols=103 Identities=18% Similarity=0.173 Sum_probs=70.8
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCCh---hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC-C-CC----
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQ---NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP-H-RQ---- 71 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~-~-~~---- 71 (142)
||||+|.|..++.....-+|++|+|+|+... ++.+.+ ..+ ...+.|+|+..||+|.+ . ..
T Consensus 546 dtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi----~lL-------R~rktpFivALNKiDRLYgwk~~p~~ 614 (1064)
T KOG1144|consen 546 DTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESI----NLL-------RMRKTPFIVALNKIDRLYGWKSCPNA 614 (1064)
T ss_pred cCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHH----HHH-------HhcCCCeEEeehhhhhhcccccCCCc
Confidence 8999999999999888999999999999864 333332 222 22589999999999963 1 10
Q ss_pred -------------------CCHHHHHHHHHHcCC--------------ceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 72 -------------------VDINDIECFYKEHNF--------------IGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 72 -------------------~~~~~~~~~~~~~~~--------------~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
.....+.+|+. .|+ ..++.+||.+|+||-+|+.+|+...-...
T Consensus 615 ~i~~~lkkQ~k~v~~EF~~R~~~ii~efaE-QgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m 690 (1064)
T KOG1144|consen 615 PIVEALKKQKKDVQNEFKERLNNIIVEFAE-QGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTM 690 (1064)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-cccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHH
Confidence 00111112221 121 12567899999999999999987765543
No 279
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=1.5e-06 Score=65.39 Aligned_cols=103 Identities=12% Similarity=0.012 Sum_probs=72.2
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHH--HHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKW--KKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIE 78 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~--~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~ 78 (142)
|+||+++|-+.+-......|.+++|++.++.......+.+ +..+ .-...++|+||+|..+.....+.+.
T Consensus 56 Dvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdll---------gi~~giivltk~D~~d~~r~e~~i~ 126 (447)
T COG3276 56 DVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDLL---------GIKNGIIVLTKADRVDEARIEQKIK 126 (447)
T ss_pred eCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHhc---------CCCceEEEEeccccccHHHHHHHHH
Confidence 7999999988887788899999999999754333332222 2222 2334599999999865222233333
Q ss_pred HHHHH--cCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 79 CFYKE--HNFIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 79 ~~~~~--~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
.+... +...+++.+|+++|+||++|.+.|.....
T Consensus 127 ~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 127 QILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE 162 (447)
T ss_pred HHHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence 33333 23356889999999999999999999884
No 280
>PRK00007 elongation factor G; Reviewed
Probab=98.50 E-value=1.1e-06 Score=70.76 Aligned_cols=88 Identities=15% Similarity=0.147 Sum_probs=60.1
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+.+|.......++.+|++++|+|............|..... .++|+|+++||+|+.... .......+
T Consensus 81 DTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~--------~~~p~iv~vNK~D~~~~~-~~~~~~~i 151 (693)
T PRK00007 81 DTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADK--------YKVPRIAFVNKMDRTGAD-FYRVVEQI 151 (693)
T ss_pred eCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHH--------cCCCEEEEEECCCCCCCC-HHHHHHHH
Confidence 899999998877778899999999999987755555444433221 468999999999987522 23344445
Q ss_pred HHHcCC---ceEEEeeccCC
Q psy10891 81 YKEHNF---IGWTETSTKEG 97 (142)
Q Consensus 81 ~~~~~~---~~~~~~Sa~~~ 97 (142)
...++. ...+.+|+..+
T Consensus 152 ~~~l~~~~~~~~ipisa~~~ 171 (693)
T PRK00007 152 KDRLGANPVPIQLPIGAEDD 171 (693)
T ss_pred HHHhCCCeeeEEecCccCCc
Confidence 555554 22445666554
No 281
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.50 E-value=2.1e-06 Score=63.06 Aligned_cols=57 Identities=23% Similarity=0.159 Sum_probs=40.5
Q ss_pred CCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHH-HHHHHHHH
Q psy10891 54 SPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMK-FLLDVLMR 113 (142)
Q Consensus 54 ~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~-~l~~~~~~ 113 (142)
..+|+|+|+||.|+... .+....+.......+++.+||+.+.++.++.+ .+..++..
T Consensus 213 t~KPvI~VlNK~Dl~~~---~~~~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe 270 (318)
T cd01899 213 RSKPMVIAANKADIPDA---ENNISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPG 270 (318)
T ss_pred cCCcEEEEEEHHHccCh---HHHHHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence 35799999999997531 11222233344445699999999999999997 58887743
No 282
>PRK01889 GTPase RsgA; Reviewed
Probab=98.49 E-value=1.4e-06 Score=65.04 Aligned_cols=84 Identities=12% Similarity=0.027 Sum_probs=59.2
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeecc
Q psy10891 16 YKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTK 95 (142)
Q Consensus 16 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 95 (142)
..++|.+++|+++..+.+...++.++..+.. .+++.+||.||+|+.+. ..+....+.......+++.+|++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~-------~~i~piIVLNK~DL~~~--~~~~~~~~~~~~~g~~Vi~vSa~ 180 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE-------SGAEPVIVLTKADLCED--AEEKIAEVEALAPGVPVLAVSAL 180 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHH-------cCCCEEEEEEChhcCCC--HHHHHHHHHHhCCCCcEEEEECC
Confidence 5789999999999755555566677666531 46888999999999642 11222333332222568999999
Q ss_pred CCCCHHHHHHHHH
Q psy10891 96 EGLMVNDSMKFLL 108 (142)
Q Consensus 96 ~~~~i~~l~~~l~ 108 (142)
++.|+++|...+.
T Consensus 181 ~g~gl~~L~~~L~ 193 (356)
T PRK01889 181 DGEGLDVLAAWLS 193 (356)
T ss_pred CCccHHHHHHHhh
Confidence 9999999888773
No 283
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.46 E-value=1.2e-06 Score=64.62 Aligned_cols=87 Identities=10% Similarity=0.010 Sum_probs=54.1
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcC--------C
Q psy10891 15 YYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHN--------F 86 (142)
Q Consensus 15 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~--------~ 86 (142)
....+|.+++|.+.... +++......+. .+..|+|+||+|+............+...+. +
T Consensus 166 i~~~aD~vlvv~~p~~g---d~iq~~k~gi~---------E~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w 233 (332)
T PRK09435 166 VAGMVDFFLLLQLPGAG---DELQGIKKGIM---------ELADLIVINKADGDNKTAARRAAAEYRSALRLLRPKDPGW 233 (332)
T ss_pred HHHhCCEEEEEecCCch---HHHHHHHhhhh---------hhhheEEeehhcccchhHHHHHHHHHHHHHhcccccccCC
Confidence 45679999999764433 33322222222 2334899999998652211112222222221 2
Q ss_pred -ceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 87 -IGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 87 -~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
.|++.+||.++.|++++++.|..++..
T Consensus 234 ~~pVi~vSA~~g~GIdeL~~~I~~~~~~ 261 (332)
T PRK09435 234 QPPVLTCSALEGEGIDEIWQAIEDHRAA 261 (332)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999988753
No 284
>KOG0090|consensus
Probab=98.43 E-value=2.6e-06 Score=58.50 Aligned_cols=68 Identities=19% Similarity=0.281 Sum_probs=47.1
Q ss_pred CCCcchhhhhhhHhhhc---cCCEEEEEEeCCCh-hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 1 MTEGQERFTWMTRVYYK---DAHGCIIMFDLTNQ-NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~---~ad~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
|.||+.|.+.-...++. .+-+++||+|..-. .-..++..++-.+...++. ....+|++++.||.|+..
T Consensus 88 D~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~-~~~~~~vLIaCNKqDl~t 159 (238)
T KOG0090|consen 88 DLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRV-KKNKPPVLIACNKQDLFT 159 (238)
T ss_pred eCCCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhcc-ccCCCCEEEEecchhhhh
Confidence 78999999887777776 79999999998643 2334444444343322211 235789999999999854
No 285
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.42 E-value=2.5e-06 Score=58.72 Aligned_cols=81 Identities=17% Similarity=0.139 Sum_probs=53.9
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHHHHHH-cCCceEEEeeccC
Q psy10891 19 AHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIECFYKE-HNFIGWTETSTKE 96 (142)
Q Consensus 19 ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~ 96 (142)
+|.+|.|+|+.+..+... .+...+ ...-++++||+|+.+ .....+......+. ....+++++|+++
T Consensus 113 ~~~~i~vvD~~~~~~~~~--~~~~qi----------~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~ 180 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPR--KGGPGI----------TRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKT 180 (199)
T ss_pred hCcEEEEEEcchhhhhhh--hhHhHh----------hhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCC
Confidence 688999999987544221 111122 223389999999964 12234444444444 3336799999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy10891 97 GLMVNDSMKFLLDVL 111 (142)
Q Consensus 97 ~~~i~~l~~~l~~~~ 111 (142)
|.|++++|+++.+++
T Consensus 181 g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 181 KEGLDTVIDWIEHYA 195 (199)
T ss_pred CCCHHHHHHHHHhhc
Confidence 999999999998765
No 286
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.41 E-value=2.6e-06 Score=62.31 Aligned_cols=98 Identities=11% Similarity=0.133 Sum_probs=64.9
Q ss_pred hccCCEEEEEEeCCChh---hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHHHHHHcCCceEEE
Q psy10891 16 YKDAHGCIIMFDLTNQN---SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIECFYKEHNFIGWTE 91 (142)
Q Consensus 16 ~~~ad~ii~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~ 91 (142)
+.++-++++|+|++..+ -.++...+..++..+. ....+.|.++|+||+|+.. ..........+.+..+..+++.
T Consensus 235 IERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~--~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ 312 (369)
T COG0536 235 IERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYS--PKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYL 312 (369)
T ss_pred HHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhh--HHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCccee
Confidence 35789999999998543 2455555556665332 1235889999999999643 1112222223333444443333
Q ss_pred eeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 92 TSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 92 ~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
+||.++.|++++...+...+.+..
T Consensus 313 ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 313 ISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred eehhcccCHHHHHHHHHHHHHHhh
Confidence 999999999999999998887765
No 287
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.37 E-value=3.2e-06 Score=68.55 Aligned_cols=60 Identities=17% Similarity=0.169 Sum_probs=46.8
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP 68 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 68 (142)
||||+.+|.......++.+|++++|+|+...........|..... .+.|+|+++||+|+.
T Consensus 93 DtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~--------~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 93 DTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALR--------ERVKPVLFINKVDRL 152 (731)
T ss_pred cCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHH--------cCCCeEEEEECchhh
Confidence 899999999888889999999999999987644444334433332 356889999999975
No 288
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.36 E-value=3.1e-06 Score=66.74 Aligned_cols=87 Identities=17% Similarity=0.096 Sum_probs=62.7
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccC
Q psy10891 17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKE 96 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 96 (142)
.+.|+++-|+|+++.+-.-.+ -++.+. -++|++++.|++|..++.--.-+...+.+..| .|++.+||++
T Consensus 80 ~~~D~ivnVvDAtnLeRnLyl--tlQLlE--------~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LG-vPVv~tvA~~ 148 (653)
T COG0370 80 GKPDLIVNVVDATNLERNLYL--TLQLLE--------LGIPMILALNMIDEAKKRGIRIDIEKLSKLLG-VPVVPTVAKR 148 (653)
T ss_pred CCCCEEEEEcccchHHHHHHH--HHHHHH--------cCCCeEEEeccHhhHHhcCCcccHHHHHHHhC-CCEEEEEeec
Confidence 466999999999986432221 122221 47899999999998763223334456778888 6799999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q psy10891 97 GLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 97 ~~~i~~l~~~l~~~~~~~ 114 (142)
|.|++++..++.......
T Consensus 149 g~G~~~l~~~i~~~~~~~ 166 (653)
T COG0370 149 GEGLEELKRAIIELAESK 166 (653)
T ss_pred CCCHHHHHHHHHHhcccc
Confidence 999999999988755443
No 289
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.33 E-value=2.2e-06 Score=64.09 Aligned_cols=92 Identities=15% Similarity=0.116 Sum_probs=61.4
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChh---hHH---HHH--HHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQN---SFK---NTL--KWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV 72 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~---s~~---~~~--~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~ 72 (142)
|+||+..|-.-+-.-...||++|+|+|+++.+ .|. ..+ .++... ..-..+|++.||.|+.+ .
T Consensus 91 DaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~t--------lGi~~lIVavNKMD~v~--w 160 (428)
T COG5256 91 DAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLART--------LGIKQLIVAVNKMDLVS--W 160 (428)
T ss_pred eCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHh--------cCCceEEEEEEcccccc--c
Confidence 89999999987777778999999999998762 110 011 111221 12234899999999975 2
Q ss_pred CHHH-------HHHHHHHcCCc----eEEEeeccCCCCHHH
Q psy10891 73 DIND-------IECFYKEHNFI----GWTETSTKEGLMVND 102 (142)
Q Consensus 73 ~~~~-------~~~~~~~~~~~----~~~~~Sa~~~~~i~~ 102 (142)
+.+. ...+.+..|+. +|+.||+..|.|+.+
T Consensus 161 de~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 161 DEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 2222 22245566653 489999999998754
No 290
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.33 E-value=2e-06 Score=69.51 Aligned_cols=61 Identities=15% Similarity=0.115 Sum_probs=46.4
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
||||+.+|......+++.+|++++|+|+...........|..... .+.|+++++||+|...
T Consensus 92 DTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~--------~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 92 DTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALK--------ENVKPVLFINKVDRLI 152 (720)
T ss_pred eCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHH--------cCCCEEEEEEChhccc
Confidence 899999999888899999999999999987543333333322221 4678899999999853
No 291
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.28 E-value=1.3e-05 Score=58.48 Aligned_cols=89 Identities=15% Similarity=0.174 Sum_probs=65.7
Q ss_pred cCCEEEEEEeCCCh--hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeecc
Q psy10891 18 DAHGCIIMFDLTNQ--NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTK 95 (142)
Q Consensus 18 ~ad~ii~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 95 (142)
=+++|+|+||.+.. .+.+....++.++.... +.|+++|.||+|... ....+.+.......+......+++.
T Consensus 247 l~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f------~~p~v~V~nK~D~~~-~e~~~~~~~~~~~~~~~~~~~~~~~ 319 (346)
T COG1084 247 LAGVILFLFDPSETCGYSLEEQISLLEEIKELF------KAPIVVVINKIDIAD-EEKLEEIEASVLEEGGEEPLKISAT 319 (346)
T ss_pred hcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc------CCCeEEEEecccccc-hhHHHHHHHHHHhhccccccceeee
Confidence 36889999999863 57788888888887544 489999999999864 2234444444555554557788999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q psy10891 96 EGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 96 ~~~~i~~l~~~l~~~~~~ 113 (142)
.+.+++.+...+...+.+
T Consensus 320 ~~~~~d~~~~~v~~~a~~ 337 (346)
T COG1084 320 KGCGLDKLREEVRKTALE 337 (346)
T ss_pred ehhhHHHHHHHHHHHhhc
Confidence 999998888777776554
No 292
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.27 E-value=7.5e-06 Score=59.23 Aligned_cols=96 Identities=16% Similarity=0.137 Sum_probs=68.5
Q ss_pred hhhhhhHhhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCH-HHHHHHHHHc
Q psy10891 7 RFTWMTRVYYKDAHGCIIMFDLTNQN-SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDI-NDIECFYKEH 84 (142)
Q Consensus 7 ~~~~~~~~~~~~ad~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~-~~~~~~~~~~ 84 (142)
|.+.+.+..+.+.|-+++++.+.+|+ +...++.++-... ..++..|+|.||+|+.+..... +....+....
T Consensus 68 Rkn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae-------~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~ 140 (301)
T COG1162 68 RKNVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAE-------AGGIEPVIVLNKIDLLDDEEAAVKELLREYEDI 140 (301)
T ss_pred ccCceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHH-------HcCCcEEEEEEccccCcchHHHHHHHHHHHHhC
Confidence 44445555666788888888888775 6666777766553 2578888999999998622111 3455567777
Q ss_pred CCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891 85 NFIGWTETSTKEGLMVNDSMKFLLDV 110 (142)
Q Consensus 85 ~~~~~~~~Sa~~~~~i~~l~~~l~~~ 110 (142)
+ .+++.+|++++.+++++...+...
T Consensus 141 g-y~v~~~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 141 G-YPVLFVSAKNGDGLEELAELLAGK 165 (301)
T ss_pred C-eeEEEecCcCcccHHHHHHHhcCC
Confidence 7 569999999999999998887543
No 293
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=2.8e-06 Score=61.84 Aligned_cols=106 Identities=12% Similarity=0.125 Sum_probs=71.3
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCCh----hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCC---CC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQ----NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQ---VD 73 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~---~~ 73 (142)
|.||+|-...++-+-..=.|++++|+..+.+ ++-+.+..+ ++. .-..+|++-||+|+..+. ..
T Consensus 92 DaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Al--eIi--------gik~iiIvQNKIDlV~~E~AlE~ 161 (415)
T COG5257 92 DAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMAL--EII--------GIKNIIIVQNKIDLVSRERALEN 161 (415)
T ss_pred eCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHH--hhh--------ccceEEEEecccceecHHHHHHH
Confidence 7899997666554444445999999999864 454443221 221 345789999999997622 22
Q ss_pred HHHHHHHHHHc--CCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891 74 INDIECFYKEH--NFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 74 ~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 116 (142)
.+++..|.+-. ...|++.+||..+.||+.+++.|.+++.....
T Consensus 162 y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~r 206 (415)
T COG5257 162 YEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPER 206 (415)
T ss_pred HHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCcc
Confidence 33333333221 11579999999999999999999999876543
No 294
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.23 E-value=3e-06 Score=69.65 Aligned_cols=60 Identities=15% Similarity=0.184 Sum_probs=48.7
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP 68 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 68 (142)
||||+.+|.......++.+|++|+|+|+...........|..... .++|+|+++||+|..
T Consensus 104 DtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~--------~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 104 DSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALG--------ERIRPVLTVNKMDRC 163 (843)
T ss_pred CCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHH--------CCCCEEEEEECCccc
Confidence 899999999999888999999999999988755444344433332 578999999999986
No 295
>KOG1490|consensus
Probab=98.22 E-value=1.3e-05 Score=61.39 Aligned_cols=91 Identities=15% Similarity=0.133 Sum_probs=67.1
Q ss_pred CEEEEEEeCCCh--hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHH--HHHHHHHcCCceEEEeec
Q psy10891 20 HGCIIMFDLTNQ--NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDIND--IECFYKEHNFIGWTETST 94 (142)
Q Consensus 20 d~ii~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~--~~~~~~~~~~~~~~~~Sa 94 (142)
.+|+++.|++.. .|......++..+.... .+.|.|+|.||+|+.. ..+..+. +.+....-+..+++.+|+
T Consensus 249 aaVLYfmDLSe~CGySva~QvkLfhsIKpLF-----aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~ 323 (620)
T KOG1490|consen 249 SAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF-----ANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSC 323 (620)
T ss_pred hhheeeeechhhhCCCHHHHHHHHHHhHHHh-----cCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecc
Confidence 568888999864 57777667777776555 6899999999999876 3333332 222233344467999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHh
Q psy10891 95 KEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 95 ~~~~~i~~l~~~l~~~~~~~~ 115 (142)
.+..|+.++....+..++...
T Consensus 324 ~~eegVm~Vrt~ACe~LLa~R 344 (620)
T KOG1490|consen 324 VQEEGVMDVRTTACEALLAAR 344 (620)
T ss_pred cchhceeeHHHHHHHHHHHHH
Confidence 999999999999888888654
No 296
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.19 E-value=9e-06 Score=57.19 Aligned_cols=106 Identities=15% Similarity=0.131 Sum_probs=66.0
Q ss_pred CCCcchhhhhh-----hHhhhccCCEEEEEEeCCChh---hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC---
Q psy10891 1 MTEGQERFTWM-----TRVYYKDAHGCIIMFDLTNQN---SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH--- 69 (142)
Q Consensus 1 Dt~G~e~~~~~-----~~~~~~~ad~ii~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~--- 69 (142)
|.|||..+... .+..++++.++|+|+|+...+ .+..+...+..+.+.+ +++.+-+..+|+|+..
T Consensus 54 D~pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s-----p~~~v~vfiHK~D~l~~~~ 128 (232)
T PF04670_consen 54 DCPGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYS-----PNIKVFVFIHKMDLLSEDE 128 (232)
T ss_dssp EE-SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHS-----TT-EEEEEEE-CCCS-HHH
T ss_pred EcCCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhC-----CCCeEEEEEeecccCCHHH
Confidence 78998766543 577899999999999998433 2333445555555554 7899999999999875
Q ss_pred CC----CCHHHHHHHHHHcC--CceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 70 RQ----VDINDIECFYKEHN--FIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 70 ~~----~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
+. ...+.+...+...+ ...++.+|.-+ +.+.+.|..++..+.
T Consensus 129 r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI~D-~Sly~A~S~Ivq~Li 176 (232)
T PF04670_consen 129 REEIFRDIQQRIRDELEDLGIEDITFFLTSIWD-ESLYEAWSKIVQKLI 176 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-TSEEEEEE-TTS-THHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHhhhccccceEEEeccCcC-cHHHHHHHHHHHHHc
Confidence 11 11222333344444 13478888888 477777777776664
No 297
>PTZ00416 elongation factor 2; Provisional
Probab=98.16 E-value=4.4e-06 Score=68.58 Aligned_cols=60 Identities=15% Similarity=0.190 Sum_probs=47.6
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP 68 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 68 (142)
||||+.+|.......++.+|++|+|+|+...........| ..+. ..++|+|+++||+|+.
T Consensus 98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~-------~~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQAL-------QERIRPVLFINKVDRA 157 (836)
T ss_pred cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHH-------HcCCCEEEEEEChhhh
Confidence 8999999998888899999999999999886544443334 3332 1468999999999986
No 298
>KOG1707|consensus
Probab=98.15 E-value=1.1e-05 Score=62.69 Aligned_cols=92 Identities=20% Similarity=0.175 Sum_probs=70.9
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHHHHHHcCCceEEEeecc
Q psy10891 17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTK 95 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~ 95 (142)
..+|++.++||++++.||......+.... ....+|+++|++|+|+.+ .+...-....++.++++.+.+.+|.+
T Consensus 494 ~~cDv~~~~YDsS~p~sf~~~a~v~~~~~------~~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~ 567 (625)
T KOG1707|consen 494 AACDVACLVYDSSNPRSFEYLAEVYNKYF------DLYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSK 567 (625)
T ss_pred ceeeeEEEecccCCchHHHHHHHHHHHhh------hccCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccC
Confidence 56899999999999999998776654442 226899999999999976 22222222789999998777888888
Q ss_pred CCCCHHHHHHHHHHHHHHHh
Q psy10891 96 EGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 96 ~~~~i~~l~~~l~~~~~~~~ 115 (142)
.... .++|.+|+.++....
T Consensus 568 ~~~s-~~lf~kL~~~A~~Ph 586 (625)
T KOG1707|consen 568 TLSS-NELFIKLATMAQYPH 586 (625)
T ss_pred CCCC-chHHHHHHHhhhCCC
Confidence 6434 899999999988765
No 299
>KOG0082|consensus
Probab=98.11 E-value=1.2e-05 Score=59.40 Aligned_cols=116 Identities=15% Similarity=0.078 Sum_probs=73.7
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChh--hH-----HHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC---
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQN--SF-----KNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR--- 70 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~--s~-----~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--- 70 (142)
|++||..-+.-|-.++.+++++|||+++++=. .+ ..+..-+..+...++..-=.+.++||..||.|+...
T Consensus 201 DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DLFeEKi~ 280 (354)
T KOG0082|consen 201 DVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDLFEEKIK 280 (354)
T ss_pred eCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHHHHHHhc
Confidence 89999999999999999999999999997421 11 112222222222222222357999999999998430
Q ss_pred ------------CC-CHHHHHHH----HH----Hc-CCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891 71 ------------QV-DINDIECF----YK----EH-NFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 71 ------------~~-~~~~~~~~----~~----~~-~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 116 (142)
.. ..+....+ +. .. .-.-+..++|.+-.+|..+|+.+...+..++-
T Consensus 281 ~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~nl 348 (354)
T KOG0082|consen 281 KVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNNL 348 (354)
T ss_pred cCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHHH
Confidence 01 11111111 11 11 11214467999999999999999999987653
No 300
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.08 E-value=3.6e-05 Score=53.20 Aligned_cols=56 Identities=20% Similarity=0.186 Sum_probs=40.1
Q ss_pred CCCEEEEEeCCCCCCC-CCCHHHHHHHHHHc-CCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891 55 PIPCMLLANKCDLPHR-QVDINDIECFYKEH-NFIGWTETSTKEGLMVNDSMKFLLDV 110 (142)
Q Consensus 55 ~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~l~~~l~~~ 110 (142)
..|.++++||+|+... ...........+.. ...+++++||+++.|++++|+++..+
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999642 22233333333332 33579999999999999999999875
No 301
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=9.1e-06 Score=58.62 Aligned_cols=102 Identities=13% Similarity=0.128 Sum_probs=66.2
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHH-HHHHHhcccCCCCCCC-EEEEEeCCCCCC-C---CCCH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWK-KDVDLKCTLSDGSPIP-CMLLANKCDLPH-R---QVDI 74 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~p-~ilv~nK~D~~~-~---~~~~ 74 (142)
|+||+.+|-..+-.-.+..|+.|+|+.+++.+--+..+..+ ... -++| ++++.||+|+.+ + ..-+
T Consensus 81 DcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarq---------vGvp~ivvflnK~Dmvdd~ellelVe 151 (394)
T COG0050 81 DCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQ---------VGVPYIVVFLNKVDMVDDEELLELVE 151 (394)
T ss_pred cCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhh---------cCCcEEEEEEecccccCcHHHHHHHH
Confidence 89999999887766778899999999999864333322222 221 3776 688899999976 2 1233
Q ss_pred HHHHHHHHHcCCc----eEEEeeccCCC--------CHHHHHHHHHHHH
Q psy10891 75 NDIECFYKEHNFI----GWTETSTKEGL--------MVNDSMKFLLDVL 111 (142)
Q Consensus 75 ~~~~~~~~~~~~~----~~~~~Sa~~~~--------~i~~l~~~l~~~~ 111 (142)
-+...+...+++. |++.-||...- .|.+|++.+..++
T Consensus 152 mEvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yi 200 (394)
T COG0050 152 MEVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYI 200 (394)
T ss_pred HHHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcC
Confidence 4456677888863 56666665432 2455555554444
No 302
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=98.08 E-value=2.1e-05 Score=42.94 Aligned_cols=44 Identities=23% Similarity=0.318 Sum_probs=30.5
Q ss_pred cCCEEEEEEeCCCh--hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCC
Q psy10891 18 DAHGCIIMFDLTNQ--NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCD 66 (142)
Q Consensus 18 ~ad~ii~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 66 (142)
=.++++|++|++.. .|.+....++.+++... .+.|+++|.||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F-----~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF-----PNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT-----TTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc-----CCCCEEEEEeccC
Confidence 36899999999864 57777778888887665 6899999999998
No 303
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.07 E-value=2.8e-05 Score=56.79 Aligned_cols=85 Identities=13% Similarity=0.058 Sum_probs=53.3
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHH--------HHHHHHH-cC
Q psy10891 15 YYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDIND--------IECFYKE-HN 85 (142)
Q Consensus 15 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~--------~~~~~~~-~~ 85 (142)
....+|.++++.... +.+.+......+ ..+|.++|+||+|+.... .... ...+... .+
T Consensus 144 i~~~aD~i~vv~~~~---~~~el~~~~~~l---------~~~~~ivv~NK~Dl~~~~-~~~~~~~~~~~~l~~l~~~~~~ 210 (300)
T TIGR00750 144 IANMADTFVVVTIPG---TGDDLQGIKAGL---------MEIADIYVVNKADGEGAT-NVTIARLMLALALEEIRRREDG 210 (300)
T ss_pred HHHhhceEEEEecCC---ccHHHHHHHHHH---------hhhccEEEEEcccccchh-HHHHHHHHHHHHHhhccccccC
Confidence 456678888875433 334444444444 367889999999986511 1111 0111111 12
Q ss_pred C-ceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 86 F-IGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 86 ~-~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
+ .+++.+||+++.|+++++.++..+..
T Consensus 211 ~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 211 WRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred CCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 2 35899999999999999999988744
No 304
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.93 E-value=0.00012 Score=51.40 Aligned_cols=89 Identities=11% Similarity=-0.018 Sum_probs=51.3
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCE-EEEEeCCCCCCCCC----CHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPC-MLLANKCDLPHRQV----DIN 75 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D~~~~~~----~~~ 75 (142)
||||.- ..+.. ....+|++++|+|.+........ .++..+. ..+.|. ++|+||+|+..... ...
T Consensus 89 DtPg~~--~~~l~-~ak~aDvVllviDa~~~~~~~~~-~i~~~l~-------~~g~p~vi~VvnK~D~~~~~~~~~~~~~ 157 (225)
T cd01882 89 ECPNDI--NAMID-IAKVADLVLLLIDASFGFEMETF-EFLNILQ-------VHGFPRVMGVLTHLDLFKKNKTLRKTKK 157 (225)
T ss_pred eCCchH--HHHHH-HHHhcCEEEEEEecCcCCCHHHH-HHHHHHH-------HcCCCeEEEEEeccccCCcHHHHHHHHH
Confidence 678753 33333 45789999999999865433332 2333332 135674 55999999864111 111
Q ss_pred HHHH-HHH-HcCCceEEEeeccCCCCH
Q psy10891 76 DIEC-FYK-EHNFIGWTETSTKEGLMV 100 (142)
Q Consensus 76 ~~~~-~~~-~~~~~~~~~~Sa~~~~~i 100 (142)
.+.. +.. .....+++.+||+++..+
T Consensus 158 ~l~~~~~~~~~~~~ki~~iSa~~~~~~ 184 (225)
T cd01882 158 RLKHRFWTEVYQGAKLFYLSGIVHGRY 184 (225)
T ss_pred HHHHHHHHhhCCCCcEEEEeeccCCCC
Confidence 2222 221 234467999999988543
No 305
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=97.88 E-value=0.00016 Score=54.08 Aligned_cols=105 Identities=11% Similarity=0.103 Sum_probs=67.4
Q ss_pred CCCcchhhhhhh--HhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCC---CCHH
Q psy10891 1 MTEGQERFTWMT--RVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQ---VDIN 75 (142)
Q Consensus 1 Dt~G~e~~~~~~--~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~---~~~~ 75 (142)
||.|+|.|.+++ ..+-.+.|-.++++.+++..+.-.-+.+--. ..-..|+|++.||+|+.+.. -..+
T Consensus 207 DtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~--------~a~~lPviVvvTK~D~~~ddr~~~v~~ 278 (527)
T COG5258 207 DTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIA--------LAMELPVIVVVTKIDMVPDDRFQGVVE 278 (527)
T ss_pred ecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhh--------hhhcCCEEEEEEecccCcHHHHHHHHH
Confidence 899999998764 4455789999999999988665432222111 12479999999999986511 0111
Q ss_pred HHHHH----------------------HHHc--CCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 76 DIECF----------------------YKEH--NFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 76 ~~~~~----------------------~~~~--~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
++..+ +-.. +..|++.+|+-+|.|++ +++.+...+..+
T Consensus 279 ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gld-lL~e~f~~Lp~r 340 (527)
T COG5258 279 EISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLD-LLDEFFLLLPKR 340 (527)
T ss_pred HHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHH-HHHHHHHhCCcc
Confidence 11111 1111 23689999999999986 555555555443
No 306
>KOG0468|consensus
Probab=97.86 E-value=2.1e-05 Score=62.22 Aligned_cols=60 Identities=18% Similarity=0.281 Sum_probs=49.6
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP 68 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 68 (142)
||||+-.|..-+-..++-+|++++|+|+....++..-+.+...+. .+.|+++|+||.|..
T Consensus 203 DTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq--------~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 203 DTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ--------NRLPIVVVINKVDRL 262 (971)
T ss_pred cCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh--------ccCcEEEEEehhHHH
Confidence 899999999999999999999999999998877765433333332 679999999999964
No 307
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=9.9e-05 Score=55.93 Aligned_cols=77 Identities=18% Similarity=0.157 Sum_probs=55.3
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
|||||++|+.=+...+.-+|.+++|+|+-....-+.. .+ ...| ...++||+-.+||.|... ..+.+.+.++
T Consensus 87 DTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~-KL----feVc---rlR~iPI~TFiNKlDR~~-rdP~ELLdEi 157 (528)
T COG4108 87 DTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL-KL----FEVC---RLRDIPIFTFINKLDREG-RDPLELLDEI 157 (528)
T ss_pred CCCCccccchhHHHHHHhhheeeEEEecccCccHHHH-HH----HHHH---hhcCCceEEEeecccccc-CChHHHHHHH
Confidence 8999999998877778889999999999765322221 22 2222 336899999999999865 3356666666
Q ss_pred HHHcCC
Q psy10891 81 YKEHNF 86 (142)
Q Consensus 81 ~~~~~~ 86 (142)
.+.+++
T Consensus 158 E~~L~i 163 (528)
T COG4108 158 EEELGI 163 (528)
T ss_pred HHHhCc
Confidence 666664
No 308
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=4.6e-05 Score=61.27 Aligned_cols=61 Identities=20% Similarity=0.283 Sum_probs=50.9
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
|||||-+|..-....++-+|++++|+|+...-..+.-.-|..... .++|.+++.||.|...
T Consensus 82 DTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~--------~~vp~i~fiNKmDR~~ 142 (697)
T COG0480 82 DTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADK--------YGVPRILFVNKMDRLG 142 (697)
T ss_pred CCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhh--------cCCCeEEEEECccccc
Confidence 899999999999999999999999999988655454445655443 6899999999999765
No 309
>KOG0458|consensus
Probab=97.78 E-value=5.7e-05 Score=58.75 Aligned_cols=94 Identities=16% Similarity=0.147 Sum_probs=60.5
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHH-------HHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKN-------TLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQV 72 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~-------~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~ 72 (142)
|+||+..|-.-+-.-...||++++|+|++.. .|+. .++....++ .. .-..+|+++||.|+.+ ...
T Consensus 261 DaPGhkdFi~nmi~g~sqaD~avLvvd~s~~-~FE~gfd~~gQtrEha~llr-~L-----gi~qlivaiNKmD~V~Wsq~ 333 (603)
T KOG0458|consen 261 DAPGHKDFIPNMISGASQADVAVLVVDASTG-EFESGFDPGGQTREHALLLR-SL-----GISQLIVAINKMDLVSWSQD 333 (603)
T ss_pred cCCCccccchhhhccccccceEEEEEECCcc-hhhhccCCCCchHHHHHHHH-Hc-----CcceEEEEeecccccCccHH
Confidence 8999999998777777889999999999753 2321 112211221 11 2345899999999976 221
Q ss_pred CHHH----HHHHH-HHcCCc----eEEEeeccCCCCHH
Q psy10891 73 DIND----IECFY-KEHNFI----GWTETSTKEGLMVN 101 (142)
Q Consensus 73 ~~~~----~~~~~-~~~~~~----~~~~~Sa~~~~~i~ 101 (142)
..++ +..|. +..|+. .|+.||+.+|+|+-
T Consensus 334 RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~ 371 (603)
T KOG0458|consen 334 RFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLI 371 (603)
T ss_pred HHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccc
Confidence 1222 22334 445552 48999999999864
No 310
>PRK09602 translation-associated GTPase; Reviewed
Probab=97.77 E-value=0.00023 Score=53.96 Aligned_cols=54 Identities=28% Similarity=0.354 Sum_probs=36.6
Q ss_pred CCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCCCCHHH-HHHHHHHHH
Q psy10891 54 SPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVND-SMKFLLDVL 111 (142)
Q Consensus 54 ~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~-l~~~l~~~~ 111 (142)
..+|+|+|+||.|+... .+....+... +...++.+||+.+.++.+ +++.+..++
T Consensus 216 t~KPvI~VlNK~D~~~~---~~~l~~i~~~-~~~~vvpISA~~e~~l~~~l~~~i~~~l 270 (396)
T PRK09602 216 ISKPMVIAANKADLPPA---EENIERLKEE-KYYIVVPTSAEAELALRRAAKAGLIDYI 270 (396)
T ss_pred cCCCEEEEEEchhcccc---hHHHHHHHhc-CCCcEEEEcchhhhhHHHHHHHhHHhhC
Confidence 35899999999997431 1122333333 545689999999999988 566655554
No 311
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.75 E-value=0.0001 Score=54.43 Aligned_cols=90 Identities=18% Similarity=0.113 Sum_probs=60.9
Q ss_pred chhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHc
Q psy10891 5 QERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEH 84 (142)
Q Consensus 5 ~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~ 84 (142)
+.++.......+..+|+|+-|+|+.+|.+.... -+..+ . ...|.++|+||+|+.+..+.......+....
T Consensus 21 ~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~--~l~~~---v-----~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~ 90 (322)
T COG1161 21 MKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNP--ELERI---V-----KEKPKLLVLNKADLAPKEVTKKWKKYFKKEE 90 (322)
T ss_pred hHHHHHHHHHhcccCCEEEEEEeccccccccCc--cHHHH---H-----ccCCcEEEEehhhcCCHHHHHHHHHHHHhcC
Confidence 455666777788999999999999998754431 11222 1 4566699999999987444444444444444
Q ss_pred CCceEEEeeccCCCCHHHHHH
Q psy10891 85 NFIGWTETSTKEGLMVNDSMK 105 (142)
Q Consensus 85 ~~~~~~~~Sa~~~~~i~~l~~ 105 (142)
+. ..+.++++.+.+...+..
T Consensus 91 ~~-~~~~v~~~~~~~~~~i~~ 110 (322)
T COG1161 91 GI-KPIFVSAKSRQGGKKIRK 110 (322)
T ss_pred CC-ccEEEEeecccCccchHH
Confidence 53 367788888887766664
No 312
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=97.74 E-value=8.3e-05 Score=53.73 Aligned_cols=68 Identities=16% Similarity=0.179 Sum_probs=41.6
Q ss_pred cCCEEEEEEeCCCh-hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC---CCCCHHHHHHHHHHcCCceEEEee
Q psy10891 18 DAHGCIIMFDLTNQ-NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---RQVDINDIECFYKEHNFIGWTETS 93 (142)
Q Consensus 18 ~ad~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~S 93 (142)
.+|+++++++.+.. .+-.+ ...+..+. ..+|+|+|+||+|+.. .......+...+..++ ++++.+.
T Consensus 114 rvh~~ly~i~~~~~~l~~~D-~~~lk~l~--------~~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~-i~~~~~~ 183 (276)
T cd01850 114 RVHACLYFIEPTGHGLKPLD-IEFMKRLS--------KRVNIIPVIAKADTLTPEELKEFKQRIMEDIEEHN-IKIYKFP 183 (276)
T ss_pred ceEEEEEEEeCCCCCCCHHH-HHHHHHHh--------ccCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHcC-CceECCC
Confidence 57888888887641 11111 23344442 3689999999999865 1223455666677777 4477655
Q ss_pred cc
Q psy10891 94 TK 95 (142)
Q Consensus 94 a~ 95 (142)
..
T Consensus 184 ~~ 185 (276)
T cd01850 184 ED 185 (276)
T ss_pred CC
Confidence 43
No 313
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=97.72 E-value=0.00024 Score=44.37 Aligned_cols=76 Identities=21% Similarity=0.246 Sum_probs=53.4
Q ss_pred hhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHHHHHHcCCceE
Q psy10891 11 MTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIECFYKEHNFIGW 89 (142)
Q Consensus 11 ~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~ 89 (142)
....+++.++.+++||+.++..|+... |...+.. ....+.|.++++||.|+.. ..+.. ..+ .++
T Consensus 39 ~~~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~----~~k~dl~~~~~~nk~dl~~~~~~~~--------~~~-~~~ 103 (124)
T smart00010 39 YDPTSYESFDVVLQCWRVDDRDSADNK--NVPEVLV----GNKSDLPILVGGNRDVLEEERQVAT--------EEG-LEF 103 (124)
T ss_pred ccccccCCCCEEEEEEEccCHHHHHHH--hHHHHHh----cCCCCCcEEEEeechhhHhhCcCCH--------HHH-HHH
Confidence 345678899999999999999998765 8776642 2235688999999999843 22222 222 236
Q ss_pred EEeeccCCCCHH
Q psy10891 90 TETSTKEGLMVN 101 (142)
Q Consensus 90 ~~~Sa~~~~~i~ 101 (142)
+++|++++.++.
T Consensus 104 ~~~s~~~~~~~~ 115 (124)
T smart00010 104 AETSAKTPEEGE 115 (124)
T ss_pred HHHhCCCcchhh
Confidence 677889998874
No 314
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.71 E-value=0.0001 Score=49.62 Aligned_cols=44 Identities=18% Similarity=0.136 Sum_probs=29.2
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 20 HGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 20 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
|++++|+|+.++.+... ..+...+. . ...+.|+|+|.||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~--l---~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVL--Q---AGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHH--h---ccCCCCEEEEEehhhcCC
Confidence 78999999998754332 22333310 0 113689999999999965
No 315
>KOG1191|consensus
Probab=97.71 E-value=0.0001 Score=56.47 Aligned_cols=113 Identities=16% Similarity=0.080 Sum_probs=67.2
Q ss_pred CCCcchhhh-hh--------hHhhhccCCEEEEEEeC--CChhhHHHHHHHHHHHHHhcc--cCCCCCCCEEEEEeCCCC
Q psy10891 1 MTEGQERFT-WM--------TRVYYKDAHGCIIMFDL--TNQNSFKNTLKWKKDVDLKCT--LSDGSPIPCMLLANKCDL 67 (142)
Q Consensus 1 Dt~G~e~~~-~~--------~~~~~~~ad~ii~v~d~--~~~~s~~~~~~~~~~~~~~~~--~~~~~~~p~ilv~nK~D~ 67 (142)
||||...-. .. ...-...||++++|+|+ ++-.+...+...+.....-+. .+.....|++++.||.|+
T Consensus 322 DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~ 401 (531)
T KOG1191|consen 322 DTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDL 401 (531)
T ss_pred eccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhc
Confidence 889965511 11 24446789999999999 444444443444444321110 012245789999999998
Q ss_pred CC--CCCCHHHHHHHHHHc---CCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 68 PH--RQVDINDIECFYKEH---NFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 68 ~~--~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
.. +........ +.... .+..+.++|+++++|++.|...+.+.+..-
T Consensus 402 ~s~~~~~~~~~~~-~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~ 452 (531)
T KOG1191|consen 402 VSKIPEMTKIPVV-YPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVERL 452 (531)
T ss_pred cCccccccCCcee-ccccccCcccceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence 75 222221111 11111 112355699999999999999998887654
No 316
>KOG1424|consensus
Probab=97.66 E-value=0.00016 Score=55.70 Aligned_cols=77 Identities=22% Similarity=0.233 Sum_probs=54.7
Q ss_pred hhhhhhhHhhhccCCEEEEEEeCCChhhHH--HHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHH--
Q psy10891 6 ERFTWMTRVYYKDAHGCIIMFDLTNQNSFK--NTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFY-- 81 (142)
Q Consensus 6 e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~-- 81 (142)
|-|+.+|+ .+..+|+||.++|+.+|.=|. +++.++.++. +..-.+|++||.||.. .+....|+
T Consensus 163 E~WRQLWR-VlErSDivvqIVDARnPllfr~~dLe~Yvke~d--------~~K~~~LLvNKaDLl~----~~qr~aWa~Y 229 (562)
T KOG1424|consen 163 EIWRQLWR-VLERSDIVVQIVDARNPLLFRSPDLEDYVKEVD--------PSKANVLLVNKADLLP----PEQRVAWAEY 229 (562)
T ss_pred HHHHHHHH-HHhhcceEEEEeecCCccccCChhHHHHHhccc--------cccceEEEEehhhcCC----HHHHHHHHHH
Confidence 44556666 467899999999999986443 4556666653 4577899999999965 44555553
Q ss_pred -HHcCCceEEEeeccC
Q psy10891 82 -KEHNFIGWTETSTKE 96 (142)
Q Consensus 82 -~~~~~~~~~~~Sa~~ 96 (142)
...+ +++++.||..
T Consensus 230 F~~~n-i~~vf~SA~~ 244 (562)
T KOG1424|consen 230 FRQNN-IPVVFFSALA 244 (562)
T ss_pred HHhcC-ceEEEEeccc
Confidence 4445 6688889987
No 317
>KOG1532|consensus
Probab=97.64 E-value=0.00038 Score=50.05 Aligned_cols=107 Identities=17% Similarity=0.222 Sum_probs=59.7
Q ss_pred CCCcchh-hhh------hhHhhh-ccCCEEEEEEeCCC---hhhHHHHHHH-HHHHHHhcccCCCCCCCEEEEEeCCCCC
Q psy10891 1 MTEGQER-FTW------MTRVYY-KDAHGCIIMFDLTN---QNSFKNTLKW-KKDVDLKCTLSDGSPIPCMLLANKCDLP 68 (142)
Q Consensus 1 Dt~G~e~-~~~------~~~~~~-~~ad~ii~v~d~~~---~~s~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 68 (142)
|||||-. |.. +++.+. ...-++++++|.-. +.+|-.---+ ...+ -....|+|+|.||+|+.
T Consensus 122 DTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSil-------yktklp~ivvfNK~Dv~ 194 (366)
T KOG1532|consen 122 DTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSIL-------YKTKLPFIVVFNKTDVS 194 (366)
T ss_pred cCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHH-------HhccCCeEEEEeccccc
Confidence 8999765 321 122221 24466777887643 3333221111 1112 12579999999999986
Q ss_pred CCCCCHHH---HHHH---HH--------------------HcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 69 HRQVDIND---IECF---YK--------------------EHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 69 ~~~~~~~~---~~~~---~~--------------------~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
+.....+. .+.| .. -+..+..+-||+.+|.|.+++|..+...+-+.
T Consensus 195 d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy 266 (366)
T KOG1532|consen 195 DSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEY 266 (366)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence 62211111 1111 11 11113477899999999999999987666543
No 318
>KOG0461|consensus
Probab=97.64 E-value=0.00031 Score=52.03 Aligned_cols=104 Identities=13% Similarity=0.102 Sum_probs=60.7
Q ss_pred CCCcchhhhhhhHhhhccC---CEEEEEEeCCChhhHHHHHH-HHHHHHHhcccCCCCCCCEEEEEeCCCCCCC---CCC
Q psy10891 1 MTEGQERFTWMTRVYYKDA---HGCIIMFDLTNQNSFKNTLK-WKKDVDLKCTLSDGSPIPCMLLANKCDLPHR---QVD 73 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~a---d~ii~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~---~~~ 73 (142)
|.||+-. +++..+.+| |..++|+|+.....-+..+- ++.++ -....|+|.||+|.... .-.
T Consensus 76 DCPGHas---LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~---------~c~klvvvinkid~lpE~qr~sk 143 (522)
T KOG0461|consen 76 DCPGHAS---LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL---------LCKKLVVVINKIDVLPENQRASK 143 (522)
T ss_pred eCCCcHH---HHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhh---------hccceEEEEeccccccchhhhhH
Confidence 6788764 455555444 88899999976532222222 22333 23456888899887651 111
Q ss_pred -HHHHHHHH---HHcC---CceEEEeeccCC----CCHHHHHHHHHHHHHHHhC
Q psy10891 74 -INDIECFY---KEHN---FIGWTETSTKEG----LMVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 74 -~~~~~~~~---~~~~---~~~~~~~Sa~~~----~~i~~l~~~l~~~~~~~~~ 116 (142)
.+....+. +..+ ..|++++||.+| ++|.++...|...+.+.+.
T Consensus 144 i~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~R 197 (522)
T KOG0461|consen 144 IEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKR 197 (522)
T ss_pred HHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCc
Confidence 11111222 2222 267999999999 6777777777776665443
No 319
>KOG0705|consensus
Probab=97.61 E-value=0.00024 Score=55.28 Aligned_cols=100 Identities=12% Similarity=0.240 Sum_probs=75.5
Q ss_pred hHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC---CCCCHHHHHHHHHHcCCce
Q psy10891 12 TRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---RQVDINDIECFYKEHNFIG 88 (142)
Q Consensus 12 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---~~~~~~~~~~~~~~~~~~~ 88 (142)
..+|....|++||||.+.+..+|+.+..+..++. .+.....+|+++++++.-... +.+.......++..+.-+-
T Consensus 89 ~aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~---~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcs 165 (749)
T KOG0705|consen 89 DAQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMS---SYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCS 165 (749)
T ss_pred hhhhhhhccceEEEEEeccccCHHHHHHHHhhcc---cccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccc
Confidence 4567789999999999999999999888877764 223356789999998843322 3444555555555544455
Q ss_pred EEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 89 WTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 89 ~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
+|++++.+|.++..+|..+...++..
T Consensus 166 y~et~atyGlnv~rvf~~~~~k~i~~ 191 (749)
T KOG0705|consen 166 YYETCATYGLNVERVFQEVAQKIVQL 191 (749)
T ss_pred eeecchhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999998887754
No 320
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.58 E-value=0.00036 Score=43.49 Aligned_cols=40 Identities=18% Similarity=0.276 Sum_probs=28.4
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeC
Q psy10891 16 YKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANK 64 (142)
Q Consensus 16 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 64 (142)
+..+|++++|+|..++.. .....++..+. .+.|+++|.||
T Consensus 77 ~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~--------~~~~~i~v~NK 116 (116)
T PF01926_consen 77 ISKSDLIIYVVDASNPIT-EDDKNILRELK--------NKKPIILVLNK 116 (116)
T ss_dssp HCTESEEEEEEETTSHSH-HHHHHHHHHHH--------TTSEEEEEEES
T ss_pred HHHCCEEEEEEECCCCCC-HHHHHHHHHHh--------cCCCEEEEEcC
Confidence 378999999999887422 22234444442 47999999998
No 321
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.57 E-value=0.0002 Score=47.43 Aligned_cols=58 Identities=21% Similarity=0.185 Sum_probs=41.0
Q ss_pred CCCcch----hhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCC
Q psy10891 1 MTEGQE----RFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKC 65 (142)
Q Consensus 1 Dt~G~e----~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 65 (142)
||||-. ....++..|+..+|++|+|.+++...+-.....|..... .....+++|.||.
T Consensus 107 DtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~-------~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 107 DTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLD-------PDKSRTIFVLNKA 168 (168)
T ss_dssp EEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHT-------TTCSSEEEEEE-G
T ss_pred eCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhc-------CCCCeEEEEEcCC
Confidence 788843 334678889999999999999998766555556655553 1234489999984
No 322
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=97.56 E-value=0.0017 Score=44.38 Aligned_cols=95 Identities=5% Similarity=0.004 Sum_probs=57.0
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCC-------CCHHHHHHHHHHcCCce
Q psy10891 16 YKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQ-------VDINDIECFYKEHNFIG 88 (142)
Q Consensus 16 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~-------~~~~~~~~~~~~~~~~~ 88 (142)
..++|++++|+++++ .+-.+ ...+..+..... ...-.++++|.|++|..... .....+..+.+..+..
T Consensus 81 ~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg--~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r- 155 (196)
T cd01852 81 APGPHAFLLVVPLGR-FTEEE-EQAVETLQELFG--EKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGR- 155 (196)
T ss_pred CCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhC--hHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCe-
Confidence 468899999999987 33222 222333322110 11125789999999975411 1124555566665533
Q ss_pred EEEee-----ccCCCCHHHHHHHHHHHHHHHh
Q psy10891 89 WTETS-----TKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 89 ~~~~S-----a~~~~~i~~l~~~l~~~~~~~~ 115 (142)
++.++ +..+.++.+|+..|...+.++.
T Consensus 156 ~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~ 187 (196)
T cd01852 156 YVAFNNKAKGEEQEQQVKELLAKVESMVKENG 187 (196)
T ss_pred EEEEeCCCCcchhHHHHHHHHHHHHHHHHhcC
Confidence 44443 4566789999999888887643
No 323
>KOG2423|consensus
Probab=97.54 E-value=0.00062 Score=51.27 Aligned_cols=93 Identities=15% Similarity=0.119 Sum_probs=64.0
Q ss_pred hhhHhhh---ccCCEEEEEEeCCChh-hH-HHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHc
Q psy10891 10 WMTRVYY---KDAHGCIIMFDLTNQN-SF-KNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEH 84 (142)
Q Consensus 10 ~~~~~~~---~~ad~ii~v~d~~~~~-s~-~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~ 84 (142)
++|...| ..+|++|-|+|+.||. +- ..++.++.. +.+...+|+|.||+||....++...+..+.+++
T Consensus 202 RIW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkk--------e~phKHli~vLNKvDLVPtwvt~~Wv~~lSkey 273 (572)
T KOG2423|consen 202 RIWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKK--------EKPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEY 273 (572)
T ss_pred HHHHHHHHhhcccceeEEeeeccCCcccccHHHHHHHhh--------cCCcceeEEEeeccccccHHHHHHHHHHHhhhC
Confidence 3554444 5789999999999984 21 233344332 337788999999999988777788888888888
Q ss_pred CCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 85 NFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 85 ~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
..+ -|.-|.....|-..++..+.+..
T Consensus 274 PTi-AfHAsi~nsfGKgalI~llRQf~ 299 (572)
T KOG2423|consen 274 PTI-AFHASINNSFGKGALIQLLRQFA 299 (572)
T ss_pred cce-eeehhhcCccchhHHHHHHHHHH
Confidence 755 45557667677666665554443
No 324
>COG3596 Predicted GTPase [General function prediction only]
Probab=97.53 E-value=0.00087 Score=48.10 Aligned_cols=107 Identities=9% Similarity=0.058 Sum_probs=72.6
Q ss_pred CCCcchh-------hhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC---
Q psy10891 1 MTEGQER-------FTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR--- 70 (142)
Q Consensus 1 Dt~G~e~-------~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--- 70 (142)
||||-+. |......++.++|+++++.+..++.--.+.+.|..-+. ..-+.++++++|.+|....
T Consensus 93 DtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~------~~~~~~~i~~VtQ~D~a~p~~~ 166 (296)
T COG3596 93 DTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVII------LGLDKRVLFVVTQADRAEPGRE 166 (296)
T ss_pred cCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHH------hccCceeEEEEehhhhhccccc
Confidence 8899555 77777888899999999999998753333333333332 1135899999999996431
Q ss_pred -----CCCHHH-----------HHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 71 -----QVDIND-----------IECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 71 -----~~~~~~-----------~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
...... +..+++. ..|++.++...+-|++.+...+++.+....
T Consensus 167 W~~~~~~p~~a~~qfi~~k~~~~~~~~q~--V~pV~~~~~r~~wgl~~l~~ali~~lp~e~ 225 (296)
T COG3596 167 WDSAGHQPSPAIKQFIEEKAEALGRLFQE--VKPVVAVSGRLPWGLKELVRALITALPVEA 225 (296)
T ss_pred cccccCCCCHHHHHHHHHHHHHHHHHHhh--cCCeEEeccccCccHHHHHHHHHHhCcccc
Confidence 011111 1222233 257888899999999999999998887443
No 325
>KOG0460|consensus
Probab=97.51 E-value=0.00032 Score=51.76 Aligned_cols=104 Identities=13% Similarity=0.081 Sum_probs=65.0
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCC----CCCCHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPH----RQVDIN 75 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~----~~~~~~ 75 (142)
|.||+-+|-..+=.-...-|++|+|+..+|.+--+.-+.++..- + -+++ +++..||.|+.+ ..+-+-
T Consensus 123 DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLAr-Q-------VGV~~ivvfiNKvD~V~d~e~leLVEm 194 (449)
T KOG0460|consen 123 DCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLAR-Q-------VGVKHIVVFINKVDLVDDPEMLELVEM 194 (449)
T ss_pred CCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHH-H-------cCCceEEEEEecccccCCHHHHHHHHH
Confidence 88999999876655556789999999999964333323332221 1 2455 788899999874 122344
Q ss_pred HHHHHHHHcCC----ceEEEe---eccCCCC-------HHHHHHHHHHHHH
Q psy10891 76 DIECFYKEHNF----IGWTET---STKEGLM-------VNDSMKFLLDVLM 112 (142)
Q Consensus 76 ~~~~~~~~~~~----~~~~~~---Sa~~~~~-------i~~l~~~l~~~~~ 112 (142)
+++++...+|+ .|++.= ||..+.+ |..|++.+-.++.
T Consensus 195 E~RElLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip 245 (449)
T KOG0460|consen 195 EIRELLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIP 245 (449)
T ss_pred HHHHHHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCC
Confidence 56667888887 467754 4555532 4444444444443
No 326
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.46 E-value=0.00041 Score=49.11 Aligned_cols=53 Identities=17% Similarity=0.114 Sum_probs=35.4
Q ss_pred hhhHhhhc-cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 10 WMTRVYYK-DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 10 ~~~~~~~~-~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
.+...|++ ..+++++|+|++...+-.+...+...+. ..+.++++|+||+|..+
T Consensus 153 ~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld-------~~~~rti~ViTK~D~~~ 206 (240)
T smart00053 153 DMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD-------PQGERTIGVITKLDLMD 206 (240)
T ss_pred HHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH-------HcCCcEEEEEECCCCCC
Confidence 45677887 4569999998865433223223333332 24789999999999875
No 327
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.35 E-value=0.00053 Score=46.78 Aligned_cols=54 Identities=22% Similarity=0.153 Sum_probs=40.8
Q ss_pred EEEEEeCCCCCC-CCCCHHHHHHHHHHc-CCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 58 CMLLANKCDLPH-RQVDINDIECFYKEH-NFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 58 ~ilv~nK~D~~~-~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
-++|+||.|+.+ -..+.+....-++.. +-.|++++|+++|+|+++++.++....
T Consensus 145 DllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 145 DLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred eEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 489999999976 333445555555543 446799999999999999999887654
No 328
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=97.34 E-value=0.00022 Score=53.90 Aligned_cols=64 Identities=20% Similarity=0.195 Sum_probs=46.5
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCCh----------hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQ----------NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDL 67 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 67 (142)
|++||...+.-|-.++.++++||||+++++- ..+.+.-.++..+. +...-.+.|+||+.||.|+
T Consensus 242 DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~---~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 242 DVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESIC---NNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp EETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHH---TSGGGTTSEEEEEEE-HHH
T ss_pred cCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHH---hCcccccCceEEeeecHHH
Confidence 7899999999999999999999999998631 12333334445553 3223358999999999996
No 329
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.31 E-value=0.00056 Score=49.63 Aligned_cols=56 Identities=18% Similarity=0.158 Sum_probs=39.4
Q ss_pred CCCEEEEEeCCCCCCC-CCCHHHHHH-HHHHcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891 55 PIPCMLLANKCDLPHR-QVDINDIEC-FYKEHNFIGWTETSTKEGLMVNDSMKFLLDV 110 (142)
Q Consensus 55 ~~p~ilv~nK~D~~~~-~~~~~~~~~-~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 110 (142)
...-++|+||+|+... ....+.... +.......+++.+|++++.|+++++++|...
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4667999999999651 112222323 3333445679999999999999999999764
No 330
>KOG2484|consensus
Probab=97.17 E-value=0.0012 Score=49.58 Aligned_cols=70 Identities=14% Similarity=0.070 Sum_probs=45.7
Q ss_pred hhhhhHhhhccCCEEEEEEeCCChhhHH--HHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcC
Q psy10891 8 FTWMTRVYYKDAHGCIIMFDLTNQNSFK--NTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHN 85 (142)
Q Consensus 8 ~~~~~~~~~~~ad~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~ 85 (142)
|..-....+..+|+||-|.|+.||.+-. .++.|+... ..+...|||.||+|+..+.+....+.-+..++.
T Consensus 136 Y~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~--------~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~p 207 (435)
T KOG2484|consen 136 YDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQA--------HGNKKLILVLNKIDLVPREVVEKWLVYLRREGP 207 (435)
T ss_pred HHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhc--------cCCceEEEEeehhccCCHHHHHHHHHHHHhhCC
Confidence 3344455667899999999999996433 345554332 145889999999999764444444443444443
No 331
>KOG3905|consensus
Probab=97.04 E-value=0.0082 Score=44.38 Aligned_cols=59 Identities=20% Similarity=0.237 Sum_probs=42.8
Q ss_pred CCCCCEEEEEeCCCCCC--------CCC----CHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 53 GSPIPCMLLANKCDLPH--------RQV----DINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 53 ~~~~p~ilv~nK~D~~~--------~~~----~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
.-++|+++|++|||... +.. -...++.||-.+|.. .+++|++...|++-+...|+..+.
T Consensus 220 NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Gaa-LiyTSvKE~KNidllyKYivhr~y 290 (473)
T KOG3905|consen 220 NLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAA-LIYTSVKETKNIDLLYKYIVHRSY 290 (473)
T ss_pred cCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCce-eEEeecccccchHHHHHHHHHHhc
Confidence 35799999999999732 111 123456678888854 899999999999877766666554
No 332
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.90 E-value=0.00068 Score=48.30 Aligned_cols=86 Identities=13% Similarity=0.096 Sum_probs=51.8
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcC-----C-ceE
Q psy10891 16 YKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHN-----F-IGW 89 (142)
Q Consensus 16 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~-----~-~~~ 89 (142)
..-+|.+++|.-..-....+.++.=+.+ +.-|+|+||.|.........++........ + .|+
T Consensus 140 ~~~aD~~v~v~~Pg~GD~iQ~~KaGimE------------iaDi~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV 207 (266)
T PF03308_consen 140 ADMADTVVLVLVPGLGDEIQAIKAGIME------------IADIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPV 207 (266)
T ss_dssp HTTSSEEEEEEESSTCCCCCTB-TTHHH------------H-SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EE
T ss_pred HHhcCeEEEEecCCCccHHHHHhhhhhh------------hccEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCE
Confidence 4568999999988765555443332223 344899999996431122223333322211 1 479
Q ss_pred EEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 90 TETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 90 ~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
+.+||.++.|++++++.|..+.-.
T Consensus 208 ~~tsA~~~~Gi~eL~~~i~~~~~~ 231 (266)
T PF03308_consen 208 LKTSALEGEGIDELWEAIDEHRDY 231 (266)
T ss_dssp EEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999875543
No 333
>KOG1143|consensus
Probab=96.90 E-value=0.007 Score=45.53 Aligned_cols=95 Identities=16% Similarity=0.068 Sum_probs=57.7
Q ss_pred CCCcchhhhhhhHhhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCC-----
Q psy10891 1 MTEGQERFTWMTRVYY--KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVD----- 73 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~--~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~----- 73 (142)
|.||+.+|.+++-.-+ -..|.+.+|+.++..-+...-+. +..+. +-++|+.++.+|+|+..+.-.
T Consensus 255 DLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEH-Lgl~~-------AL~iPfFvlvtK~Dl~~~~~~~~tv~ 326 (591)
T KOG1143|consen 255 DLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREH-LGLIA-------ALNIPFFVLVTKMDLVDRQGLKKTVK 326 (591)
T ss_pred ecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHH-HHHHH-------HhCCCeEEEEEeeccccchhHHHHHH
Confidence 7899999998653222 24688888888876544433222 22221 138999999999998653111
Q ss_pred --------------------HHHHHHH---HHHcCCceEEEeeccCCCCHHHH
Q psy10891 74 --------------------INDIECF---YKEHNFIGWTETSTKEGLMVNDS 103 (142)
Q Consensus 74 --------------------~~~~~~~---~~~~~~~~~~~~Sa~~~~~i~~l 103 (142)
..+.... +..-++.|+|.+|..+|+|+.-+
T Consensus 327 ~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll 379 (591)
T KOG1143|consen 327 DLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLL 379 (591)
T ss_pred HHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHH
Confidence 1111111 12223467899999999997643
No 334
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.86 E-value=0.012 Score=42.90 Aligned_cols=89 Identities=12% Similarity=0.116 Sum_probs=54.3
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH-------HHHcCC-c
Q psy10891 16 YKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF-------YKEHNF-I 87 (142)
Q Consensus 16 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~-------~~~~~~-~ 87 (142)
..-+|.+++|.-..-....+.++ ..++ .+--|+|+||.|.........++... ....++ .
T Consensus 162 ~~~aDt~~~v~~pg~GD~~Q~iK---~Gim---------EiaDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~p 229 (323)
T COG1703 162 ANMADTFLVVMIPGAGDDLQGIK---AGIM---------EIADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRP 229 (323)
T ss_pred hhhcceEEEEecCCCCcHHHHHH---hhhh---------hhhheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCC
Confidence 35678888877665444444333 3332 34458999999965411111111111 111222 4
Q ss_pred eEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891 88 GWTETSTKEGLMVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 88 ~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 116 (142)
|++.+||..++|+++|++.+..+......
T Consensus 230 pv~~t~A~~g~Gi~~L~~ai~~h~~~~~~ 258 (323)
T COG1703 230 PVVTTSALEGEGIDELWDAIEDHRKFLTE 258 (323)
T ss_pred ceeEeeeccCCCHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999988765543
No 335
>KOG0466|consensus
Probab=96.81 E-value=0.0023 Score=46.85 Aligned_cols=103 Identities=9% Similarity=0.049 Sum_probs=65.3
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCC----hhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC---C
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTN----QNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV---D 73 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~ 73 (142)
|.||++-...++---..=.|++++++..+. |.+.+.+.. -+++ .=..++++-||+|+..+.. .
T Consensus 131 DCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaa--veiM--------~LkhiiilQNKiDli~e~~A~eq 200 (466)
T KOG0466|consen 131 DCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAA--VEIM--------KLKHIIILQNKIDLIKESQALEQ 200 (466)
T ss_pred cCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHH--HHHh--------hhceEEEEechhhhhhHHHHHHH
Confidence 788888765543222223477777776654 345554332 2333 2357899999999976322 2
Q ss_pred HHHHHHHHHHc--CCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 74 INDIECFYKEH--NFIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 74 ~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
.+.+..|.+.. ...|++.+||.-..||+-+.+.|++.+.-
T Consensus 201 ~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPv 242 (466)
T KOG0466|consen 201 HEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPV 242 (466)
T ss_pred HHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCC
Confidence 33344443322 12579999999999999999998888754
No 336
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=96.74 E-value=0.019 Score=43.98 Aligned_cols=86 Identities=8% Similarity=0.023 Sum_probs=52.2
Q ss_pred Hhhhc-cCCEEEEEE-eCCC----hhhH-HHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcC
Q psy10891 13 RVYYK-DAHGCIIMF-DLTN----QNSF-KNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHN 85 (142)
Q Consensus 13 ~~~~~-~ad~ii~v~-d~~~----~~s~-~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~ 85 (142)
...+. ++|+.|+|. |.+- +..+ ..-..|+.++.. .++|+|+|.||+|-.. ..+.+....+...++
T Consensus 138 ~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~-------~~kPfiivlN~~dp~~-~et~~l~~~l~eky~ 209 (492)
T TIGR02836 138 RKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKE-------LNKPFIILLNSTHPYH-PETEALRQELEEKYD 209 (492)
T ss_pred HHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHh-------cCCCEEEEEECcCCCC-chhHHHHHHHHHHhC
Confidence 44555 899999998 6630 1122 223467777742 4799999999999432 224444556666777
Q ss_pred CceEEEeeccCC--CCHHHHHHHH
Q psy10891 86 FIGWTETSTKEG--LMVNDSMKFL 107 (142)
Q Consensus 86 ~~~~~~~Sa~~~--~~i~~l~~~l 107 (142)
.|++.+|+..- ..|..++..+
T Consensus 210 -vpvl~v~c~~l~~~DI~~il~~v 232 (492)
T TIGR02836 210 -VPVLAMDVESMRESDILSVLEEV 232 (492)
T ss_pred -CceEEEEHHHcCHHHHHHHHHHH
Confidence 56777777543 2444444443
No 337
>KOG0099|consensus
Probab=96.74 E-value=0.0068 Score=43.51 Aligned_cols=64 Identities=20% Similarity=0.156 Sum_probs=44.3
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCCh----------hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQ----------NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDL 67 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 67 (142)
|++||..-+.-|=+++.+..++|||+..+.- ..+...-.++..+. +..=...+.+||..||.|+
T Consensus 208 DVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiW---nNRwL~tisvIlFLNKqDl 281 (379)
T KOG0099|consen 208 DVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIW---NNRWLRTISVILFLNKQDL 281 (379)
T ss_pred ccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHH---hhhHHhhhheeEEecHHHH
Confidence 7899999999999999999999999988631 11112122333332 1111246789999999997
No 338
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=96.71 E-value=0.019 Score=38.53 Aligned_cols=77 Identities=16% Similarity=0.087 Sum_probs=50.5
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||... ......+..+|.+++++..+. .+...+..+++.+.. .+.|+.+|.||+|... .....+..+
T Consensus 99 Dtpp~~~--~~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~-------~~~~~~vV~N~~~~~~--~~~~~~~~~ 166 (179)
T cd03110 99 DGPPGIG--CPVIASLTGADAALLVTEPTP-SGLHDLERAVELVRH-------FGIPVGVVINKYDLND--EIAEEIEDY 166 (179)
T ss_pred ECcCCCc--HHHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHH-------cCCCEEEEEeCCCCCc--chHHHHHHH
Confidence 6775432 233456688999999998874 466666666666542 2467889999998643 234556667
Q ss_pred HHHcCCceEE
Q psy10891 81 YKEHNFIGWT 90 (142)
Q Consensus 81 ~~~~~~~~~~ 90 (142)
++.+++ +++
T Consensus 167 ~~~~~~-~vl 175 (179)
T cd03110 167 CEEEGI-PIL 175 (179)
T ss_pred HHHcCC-CeE
Confidence 777773 343
No 339
>KOG0467|consensus
Probab=96.67 E-value=0.0033 Score=50.80 Aligned_cols=59 Identities=14% Similarity=0.120 Sum_probs=43.7
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDL 67 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 67 (142)
|+|||-+|.+...+..+=+|++++++|+......+... .+.+.. ..+..++||.||+|.
T Consensus 78 dspghvdf~sevssas~l~d~alvlvdvvegv~~qt~~-vlrq~~-------~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 78 DSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQTYA-VLRQAW-------IEGLKPILVINKIDR 136 (887)
T ss_pred cCCCccchhhhhhhhhhhcCCcEEEEeeccccchhHHH-HHHHHH-------HccCceEEEEehhhh
Confidence 89999999999999999999999999998754333221 122111 045677999999994
No 340
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=96.39 E-value=0.015 Score=42.89 Aligned_cols=51 Identities=25% Similarity=0.419 Sum_probs=40.9
Q ss_pred CCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 55 PIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 55 ~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
-+|.|.|.||+|+.. .+....+.+.. .++.+||+.+-|+++|...|...+.
T Consensus 239 Y~p~l~v~NKiD~~~----~e~~~~l~~~~---~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 239 YKPALYVVNKIDLPG----LEELERLARKP---NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred eeeeEEEEecccccC----HHHHHHHHhcc---ceEEEecccCCCHHHHHHHHHHhhC
Confidence 589999999999854 44555555444 4889999999999999999988774
No 341
>KOG0463|consensus
Probab=96.17 E-value=0.017 Score=43.55 Aligned_cols=96 Identities=11% Similarity=0.012 Sum_probs=51.4
Q ss_pred CCCcchhhhhhhHhhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHH---
Q psy10891 1 MTEGQERFTWMTRVYY--KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDIN--- 75 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~--~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~--- 75 (142)
|.||+|+|..++-.-+ .-.|...+++-.+-.. ....++-+... ..-.+|+.+|.+|+|.-...+..+
T Consensus 225 DLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKEHLgLA-------LaL~VPVfvVVTKIDMCPANiLqEtmK 296 (641)
T KOG0463|consen 225 DLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKEHLGLA-------LALHVPVFVVVTKIDMCPANILQETMK 296 (641)
T ss_pred eccchhhhhheeeeccccCCCCceEEEecccccc-eeccHHhhhhh-------hhhcCcEEEEEEeeccCcHHHHHHHHH
Confidence 7899999987642222 3456666766554321 11111111111 113688888888888643112122
Q ss_pred HHHHHHHHc-------------------------CCceEEEeeccCCCCHHHHH
Q psy10891 76 DIECFYKEH-------------------------NFIGWTETSTKEGLMVNDSM 104 (142)
Q Consensus 76 ~~~~~~~~~-------------------------~~~~~~~~Sa~~~~~i~~l~ 104 (142)
.+..+.+.- ..+|+|.+|-.+|.++.-+.
T Consensus 297 ll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLk 350 (641)
T KOG0463|consen 297 LLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLK 350 (641)
T ss_pred HHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHH
Confidence 222222221 22678899999999986443
No 342
>KOG2486|consensus
Probab=96.09 E-value=0.005 Score=44.39 Aligned_cols=96 Identities=14% Similarity=0.231 Sum_probs=56.1
Q ss_pred chhhhhhhHhhhc---cCCEEEEEEeCCChh--hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC---CCCCHH-
Q psy10891 5 QERFTWMTRVYYK---DAHGCIIMFDLTNQN--SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---RQVDIN- 75 (142)
Q Consensus 5 ~e~~~~~~~~~~~---~ad~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---~~~~~~- 75 (142)
-+.+..++..|+- +.-.+++++|++.+. +-...-.|+.+ .++|+.+|.||||... +.-...
T Consensus 203 ~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge----------~~VP~t~vfTK~DK~k~~~~~~kKp~ 272 (320)
T KOG2486|consen 203 PADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGE----------NNVPMTSVFTKCDKQKKVKRTGKKPG 272 (320)
T ss_pred cchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhh----------cCCCeEEeeehhhhhhhccccccCcc
Confidence 4456666777763 334456677776542 33333456555 4899999999999754 111111
Q ss_pred -HHHHHHHHcC------CceEEEeeccCCCCHHHHHHHHHHH
Q psy10891 76 -DIECFYKEHN------FIGWTETSTKEGLMVNDSMKFLLDV 110 (142)
Q Consensus 76 -~~~~~~~~~~------~~~~~~~Sa~~~~~i~~l~~~l~~~ 110 (142)
.+........ ..|++.+|+.++.|++.|+-.+...
T Consensus 273 ~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 273 LNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred ccceeehhhccccceeccCCceeeecccccCceeeeeehhhh
Confidence 1111111111 1457789999999999887665543
No 343
>KOG3886|consensus
Probab=95.85 E-value=0.13 Score=36.49 Aligned_cols=64 Identities=20% Similarity=0.215 Sum_probs=44.7
Q ss_pred CCCcchhhhh-----hhHhhhccCCEEEEEEeCCChhhHHHHH---HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 1 MTEGQERFTW-----MTRVYYKDAHGCIIMFDLTNQNSFKNTL---KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 1 Dt~G~e~~~~-----~~~~~~~~ad~ii~v~d~~~~~s~~~~~---~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
|.+|||.|.. .....+++.+++++|||+...+-..++. .-++.+.+++ +...+....+|.|+..
T Consensus 59 DcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~S-----P~AkiF~l~hKmDLv~ 130 (295)
T KOG3886|consen 59 DCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNS-----PEAKIFCLLHKMDLVQ 130 (295)
T ss_pred ccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcC-----CcceEEEEEeechhcc
Confidence 6788885432 3456788999999999998765444433 4445554433 6677888899999965
No 344
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=95.67 E-value=0.21 Score=33.63 Aligned_cols=90 Identities=16% Similarity=0.075 Sum_probs=62.6
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCC
Q psy10891 18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEG 97 (142)
Q Consensus 18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 97 (142)
..|.|+|++|.....|+..++.-+..+.... - -+.-++++-|=.......+....+..++.++. .|++++--...
T Consensus 64 rIDlIVFvinl~sk~SL~~ve~SL~~vd~~f---f-lGKVCfl~t~a~~~~~~sv~~~~V~kla~~y~-~plL~~~le~~ 138 (176)
T PF11111_consen 64 RIDLIVFVINLHSKYSLQSVEASLSHVDPSF---F-LGKVCFLATNAGRESHCSVHPNEVRKLAATYN-SPLLFADLENE 138 (176)
T ss_pred eeEEEEEEEecCCcccHHHHHHHHhhCChhh---h-ccceEEEEcCCCcccccccCHHHHHHHHHHhC-CCEEEeecccc
Confidence 5799999999999999998876665553111 1 24444444443333226788999999999998 67998887777
Q ss_pred CCHHHHHHHHHHHHH
Q psy10891 98 LMVNDSMKFLLDVLM 112 (142)
Q Consensus 98 ~~i~~l~~~l~~~~~ 112 (142)
++...+=..|.+.+-
T Consensus 139 ~~~~~lAqRLL~~lq 153 (176)
T PF11111_consen 139 EGRTSLAQRLLRMLQ 153 (176)
T ss_pred hHHHHHHHHHHHHHH
Confidence 776666666666554
No 345
>KOG0465|consensus
Probab=95.66 E-value=0.062 Score=42.81 Aligned_cols=76 Identities=16% Similarity=0.232 Sum_probs=53.8
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+-+|.--.+..++-.|++++|++......-+..-.|...-+ -++|.|..+||.|.-.. -.-..++++
T Consensus 110 DTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~r--------y~vP~i~FiNKmDRmGa-~~~~~l~~i 180 (721)
T KOG0465|consen 110 DTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKR--------YNVPRICFINKMDRMGA-SPFRTLNQI 180 (721)
T ss_pred cCCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHh--------cCCCeEEEEehhhhcCC-ChHHHHHHH
Confidence 899999999888889999999999999876543333345643321 47999999999997552 233344455
Q ss_pred HHHcC
Q psy10891 81 YKEHN 85 (142)
Q Consensus 81 ~~~~~ 85 (142)
...++
T Consensus 181 ~~kl~ 185 (721)
T KOG0465|consen 181 RTKLN 185 (721)
T ss_pred HhhcC
Confidence 55444
No 346
>KOG0448|consensus
Probab=95.59 E-value=0.13 Score=41.51 Aligned_cols=61 Identities=16% Similarity=0.224 Sum_probs=38.9
Q ss_pred CCCcc---hhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 1 MTEGQ---ERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 1 Dt~G~---e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
|.||. .....-...++.++|++|||....+..+.... .++.... + .+..+.++.||+|...
T Consensus 212 DsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek-~Ff~~vs---~----~KpniFIlnnkwDasa 275 (749)
T KOG0448|consen 212 DSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK-QFFHKVS---E----EKPNIFILNNKWDASA 275 (749)
T ss_pred cCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH-HHHHHhh---c----cCCcEEEEechhhhhc
Confidence 55662 22333456778899999999998876555543 3333332 1 2455788889999864
No 347
>KOG0410|consensus
Probab=95.44 E-value=0.019 Score=42.48 Aligned_cols=93 Identities=12% Similarity=0.035 Sum_probs=56.4
Q ss_pred hhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCC----CEEEEEeCCCCCCCCCCHHHHHHHHHH
Q psy10891 8 FTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPI----PCMLLANKCDLPHRQVDINDIECFYKE 83 (142)
Q Consensus 8 ~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~----p~ilv~nK~D~~~~~~~~~~~~~~~~~ 83 (142)
|..+.+ -+..+|+++.|.|+++|..-......+.-+. .-.-+.. .+|=|-||+|..+.....
T Consensus 248 F~ATLe-eVaeadlllHvvDiShP~ae~q~e~Vl~vL~----~igv~~~pkl~~mieVdnkiD~e~~~~e~--------- 313 (410)
T KOG0410|consen 248 FQATLE-EVAEADLLLHVVDISHPNAEEQRETVLHVLN----QIGVPSEPKLQNMIEVDNKIDYEEDEVEE--------- 313 (410)
T ss_pred HHHHHH-HHhhcceEEEEeecCCccHHHHHHHHHHHHH----hcCCCcHHHHhHHHhhccccccccccCcc---------
Confidence 443333 3468999999999999865444333332221 1111222 256678888875411111
Q ss_pred cCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 84 HNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 84 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
.... .+.+||++|.|.++++..+-..+....
T Consensus 314 E~n~-~v~isaltgdgl~el~~a~~~kv~~~t 344 (410)
T KOG0410|consen 314 EKNL-DVGISALTGDGLEELLKAEETKVASET 344 (410)
T ss_pred ccCC-ccccccccCccHHHHHHHHHHHhhhhh
Confidence 1112 667899999999999988877766544
No 348
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=95.40 E-value=0.045 Score=42.62 Aligned_cols=58 Identities=21% Similarity=0.178 Sum_probs=41.9
Q ss_pred CCCEEEEEeCCCCCC-----CC-------CCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 55 PIPCMLLANKCDLPH-----RQ-------VDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 55 ~~p~ilv~nK~D~~~-----~~-------~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
++|+++|++|+|... .. .-...++.+|-.+|.. .++||++...+++-|+..|...+..
T Consensus 196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAs-L~yts~~~~~n~~~L~~yi~h~l~~ 265 (472)
T PF05783_consen 196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGAS-LIYTSVKEEKNLDLLYKYILHRLYG 265 (472)
T ss_pred CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCe-EEEeeccccccHHHHHHHHHHHhcc
Confidence 589999999999632 11 1223356677788844 8889999999998777776666554
No 349
>KOG0085|consensus
Probab=95.18 E-value=0.02 Score=40.51 Aligned_cols=113 Identities=17% Similarity=0.122 Sum_probs=67.7
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCC----------ChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLT----------NQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR 70 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 70 (142)
|++||..-++-|-.++.+.-.++|++.++ +....+....++.-+. .+.=-.+.++|+..||.|+.+.
T Consensus 205 DvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi---~yPWF~nssVIlFLNKkDlLEe 281 (359)
T KOG0085|consen 205 DVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTII---TYPWFQNSSVILFLNKKDLLEE 281 (359)
T ss_pred ecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHh---ccccccCCceEEEechhhhhhh
Confidence 67888877777777777777666665543 2222233333444333 2212257899999999998541
Q ss_pred C-----------------CCHHHHHHH----HHHcCC-----ceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891 71 Q-----------------VDINDIECF----YKEHNF-----IGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 71 ~-----------------~~~~~~~~~----~~~~~~-----~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 116 (142)
. .+.+....+ ....+. ..--+++|.+-+||.-+|..+...++...-
T Consensus 282 kI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~L 353 (359)
T KOG0085|consen 282 KILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL 353 (359)
T ss_pred hhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhhh
Confidence 1 122222222 112221 112368999999999999999988887653
No 350
>KOG0464|consensus
Probab=95.18 E-value=0.0036 Score=47.66 Aligned_cols=79 Identities=18% Similarity=0.218 Sum_probs=56.1
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+-+|.--.+.+++-.|+++.|||.+-...-+.+-.|.. ...-++|-+...||.|.... --......+
T Consensus 108 dtpghvdf~leverclrvldgavav~dasagve~qtltvwrq--------adk~~ip~~~finkmdk~~a-nfe~avdsi 178 (753)
T KOG0464|consen 108 DTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQ--------ADKFKIPAHCFINKMDKLAA-NFENAVDSI 178 (753)
T ss_pred cCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehh--------ccccCCchhhhhhhhhhhhh-hhhhHHHHH
Confidence 899999999999999999999999999986544444446733 34468898999999997651 112233444
Q ss_pred HHHcCCce
Q psy10891 81 YKEHNFIG 88 (142)
Q Consensus 81 ~~~~~~~~ 88 (142)
.+.++..+
T Consensus 179 ~ekl~ak~ 186 (753)
T KOG0464|consen 179 EEKLGAKA 186 (753)
T ss_pred HHHhCCce
Confidence 55555443
No 351
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=95.10 E-value=0.12 Score=35.83 Aligned_cols=93 Identities=6% Similarity=0.069 Sum_probs=53.0
Q ss_pred hccCCEEEEEEeCCChhhHHHH--HHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCC--------HHHHHHHHHHcC
Q psy10891 16 YKDAHGCIIMFDLTNQNSFKNT--LKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVD--------INDIECFYKEHN 85 (142)
Q Consensus 16 ~~~ad~ii~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~--------~~~~~~~~~~~~ 85 (142)
..+.|++++|+.++. .+-.+. -.++..+. . ...-..++||.|..|....... ...+..+.+..+
T Consensus 81 ~~g~ha~llVi~~~r-~t~~~~~~l~~l~~~F---G--~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~ 154 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGR-FTEEDREVLELLQEIF---G--EEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCG 154 (212)
T ss_dssp TT-ESEEEEEEETTB--SHHHHHHHHHHHHHH---C--GGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCCeEEEEEEecCc-chHHHHHHHHHHHHHc---c--HHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcC
Confidence 467899999999983 333222 23333332 0 0112458888898886542211 123555667777
Q ss_pred CceEEEeecc------CCCCHHHHHHHHHHHHHHHh
Q psy10891 86 FIGWTETSTK------EGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 86 ~~~~~~~Sa~------~~~~i~~l~~~l~~~~~~~~ 115 (142)
. .|..+..+ ....+.+|+..+-.++.++.
T Consensus 155 ~-R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 155 G-RYHVFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp T-CEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred C-EEEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 4 36666555 33467888888777776664
No 352
>KOG2485|consensus
Probab=94.94 E-value=0.13 Score=37.78 Aligned_cols=83 Identities=17% Similarity=0.098 Sum_probs=52.5
Q ss_pred hHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEE
Q psy10891 12 TRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTE 91 (142)
Q Consensus 12 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (142)
++.-+...|++|=|-|+.-|.|... ..+..+. +..|-|+|.||+||.+.......++.+....... ++.
T Consensus 40 i~~~l~~~D~iiEvrDaRiPLssrn--~~~~~~~--------~~k~riiVlNK~DLad~~~~k~~iq~~~~~~~~~-~~~ 108 (335)
T KOG2485|consen 40 IQNRLPLVDCIIEVRDARIPLSSRN--ELFQDFL--------PPKPRIIVLNKMDLADPKEQKKIIQYLEWQNLES-YIK 108 (335)
T ss_pred HHhhcccccEEEEeeccccCCcccc--HHHHHhc--------CCCceEEEEecccccCchhhhHHHHHHHhhcccc-hhh
Confidence 3455678899999999999877665 2333332 4788999999999977444555566555553323 444
Q ss_pred eeccCCCC--HHHHHH
Q psy10891 92 TSTKEGLM--VNDSMK 105 (142)
Q Consensus 92 ~Sa~~~~~--i~~l~~ 105 (142)
.++....+ +..++.
T Consensus 109 ~~c~~~~~~~v~~l~~ 124 (335)
T KOG2485|consen 109 LDCNKDCNKQVSPLLK 124 (335)
T ss_pred hhhhhhhhhccccHHH
Confidence 44433332 444443
No 353
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=94.60 E-value=0.26 Score=36.37 Aligned_cols=66 Identities=6% Similarity=-0.001 Sum_probs=35.3
Q ss_pred CCCcchhhhhhh-------Hhhh--ccCCEEEEEEeCCChhhHHHH-HHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 1 MTEGQERFTWMT-------RVYY--KDAHGCIIMFDLTNQNSFKNT-LKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 1 Dt~G~e~~~~~~-------~~~~--~~ad~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
||||......+. ..+. .+.|+++||..++... +... ...+..+..... ..--.++|+|.|++|...
T Consensus 92 DTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG--~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 92 DTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFG--KDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred ECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhh--hhhhccEEEEEECCccCC
Confidence 899976543322 1111 2689999996654321 1111 223333332210 112357899999999763
No 354
>KOG1954|consensus
Probab=94.54 E-value=0.088 Score=39.81 Aligned_cols=52 Identities=13% Similarity=0.161 Sum_probs=36.1
Q ss_pred hhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 11 MTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 11 ~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
..+=+...+|.|+++||.....-.+.....+..+. +..-.+-+|.||.|..+
T Consensus 174 v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLk-------G~EdkiRVVLNKADqVd 225 (532)
T KOG1954|consen 174 VLEWFAERVDRIILLFDAHKLDISDEFKRVIDALK-------GHEDKIRVVLNKADQVD 225 (532)
T ss_pred HHHHHHHhccEEEEEechhhccccHHHHHHHHHhh-------CCcceeEEEeccccccC
Confidence 44566789999999999876554455555666663 23345678899999755
No 355
>KOG0447|consensus
Probab=94.39 E-value=0.57 Score=37.43 Aligned_cols=68 Identities=13% Similarity=0.175 Sum_probs=43.5
Q ss_pred hhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC-CCCHHHHHHHH
Q psy10891 8 FTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR-QVDINDIECFY 81 (142)
Q Consensus 8 ~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~ 81 (142)
...|...|+.+.+++|+|+--. |.+.-+...-.+- ..-.+.+...|+|.+|.|+.+. -..+..+..+.
T Consensus 438 I~~msKayM~NPNAIILCIQDG---SVDAERSnVTDLV---sq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIl 506 (980)
T KOG0447|consen 438 IFSISKAYMQNPNAIILCIQDG---SVDAERSIVTDLV---SQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQII 506 (980)
T ss_pred HHHHHHHHhcCCCeEEEEeccC---CcchhhhhHHHHH---HhcCCCCCeeEEEEeecchhhhccCCHHHHHHHH
Confidence 4457789999999999998432 2333222222222 1225567889999999999773 34556666554
No 356
>KOG3887|consensus
Probab=94.27 E-value=0.71 Score=33.13 Aligned_cols=109 Identities=13% Similarity=0.136 Sum_probs=61.0
Q ss_pred CCCcchhhhhh---hHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC---CCCCH
Q psy10891 1 MTEGQERFTWM---TRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---RQVDI 74 (142)
Q Consensus 1 Dt~G~e~~~~~---~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---~~~~~ 74 (142)
|.|||-.|-.- -+..+++.-++|||+|+.+.. .+.+..+..-+.+ .+.-.+++.+=+...|.|-.. +..+.
T Consensus 81 dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQddy-~eala~L~~~v~r--aykvNp~in~EVfiHKvDGLsdd~kietq 157 (347)
T KOG3887|consen 81 DFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDDY-MEALARLHMTVER--AYKVNPNINFEVFIHKVDGLSDDFKIETQ 157 (347)
T ss_pred ecCCccccCCCccCHHHHHhccCeEEEEEechHHH-HHHHHHHHHHhhh--eeecCCCceEEEEEEeccCCchhhhhhhH
Confidence 56787665433 356788999999999997642 1222233333321 122347888888999999765 11111
Q ss_pred HHHHHH----HHHcCC----ceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 75 NDIECF----YKEHNF----IGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 75 ~~~~~~----~~~~~~----~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
..+.+. ....|. ..|+.+|..+ ..|-+.|.++++.+..
T Consensus 158 rdI~qr~~d~l~d~gle~v~vsf~LTSIyD-HSIfEAFSkvVQkLip 203 (347)
T KOG3887|consen 158 RDIHQRTNDELADAGLEKVQVSFYLTSIYD-HSIFEAFSKVVQKLIP 203 (347)
T ss_pred HHHHHHhhHHHHhhhhccceEEEEEeeecc-hHHHHHHHHHHHHHhh
Confidence 111111 112221 2255666655 4677777777766543
No 357
>KOG0459|consensus
Probab=94.04 E-value=0.041 Score=41.84 Aligned_cols=102 Identities=16% Similarity=0.158 Sum_probs=58.1
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChh---hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCH---
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQN---SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDI--- 74 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~--- 74 (142)
|+||+.-|-..+=.-..+||+.++|+++.... -|+.-..-.+..+-+ ....-...|++.||.|...-..+.
T Consensus 163 DApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~La---kt~gv~~lVv~vNKMddPtvnWs~eRy 239 (501)
T KOG0459|consen 163 DAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLA---KTAGVKHLIVLINKMDDPTVNWSNERY 239 (501)
T ss_pred ccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHH---HhhccceEEEEEEeccCCccCcchhhH
Confidence 78888888765544556899999999875321 111100001111000 011335579999999976511122
Q ss_pred ----HHHHHHHHHcCC-----ceEEEeeccCCCCHHHHHH
Q psy10891 75 ----NDIECFYKEHNF-----IGWTETSTKEGLMVNDSMK 105 (142)
Q Consensus 75 ----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l~~ 105 (142)
+.+..+....|+ ..|+.||..+|.++.+...
T Consensus 240 ~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 240 EECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred HHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 223334444443 2388999999999887664
No 358
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.79 E-value=0.64 Score=33.65 Aligned_cols=73 Identities=14% Similarity=0.047 Sum_probs=43.1
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCC
Q psy10891 18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEG 97 (142)
Q Consensus 18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 97 (142)
..|.+++|+|++... +.+. +...+.+. -+ +.-+|.||.|...+ .-.+..+....+ .|+.+++ +|
T Consensus 190 ~~~~~~LVl~a~~~~--~~~~-~~~~f~~~------~~-~~g~IlTKlDe~~~---~G~~l~~~~~~~-~Pi~~~~--~G 253 (272)
T TIGR00064 190 APDEVLLVLDATTGQ--NALE-QAKVFNEA------VG-LTGIILTKLDGTAK---GGIILSIAYELK-LPIKFIG--VG 253 (272)
T ss_pred CCceEEEEEECCCCH--HHHH-HHHHHHhh------CC-CCEEEEEccCCCCC---ccHHHHHHHHHC-cCEEEEe--CC
Confidence 489999999997532 2222 22222211 11 35778999997431 223334455556 6788877 88
Q ss_pred CCHHHHHHH
Q psy10891 98 LMVNDSMKF 106 (142)
Q Consensus 98 ~~i~~l~~~ 106 (142)
++++++...
T Consensus 254 q~~~dl~~~ 262 (272)
T TIGR00064 254 EKIDDLAPF 262 (272)
T ss_pred CChHhCccC
Confidence 888776543
No 359
>KOG0469|consensus
Probab=93.75 E-value=0.066 Score=42.00 Aligned_cols=59 Identities=15% Similarity=0.177 Sum_probs=42.3
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDL 67 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 67 (142)
|.||+-+|++-....++=.|++++|+|.-+..-.+. +..+.+. ..+++.-+++.||.|.
T Consensus 104 DSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQT-ETVLrQA-------~~ERIkPvlv~NK~DR 162 (842)
T KOG0469|consen 104 DSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQT-ETVLRQA-------IAERIKPVLVMNKMDR 162 (842)
T ss_pred cCCCcccchhhhhheeEeccCcEEEEEccCceEech-HHHHHHH-------HHhhccceEEeehhhH
Confidence 789999999999999999999999999976532221 1122111 1145556789999994
No 360
>PRK14974 cell division protein FtsY; Provisional
Probab=93.67 E-value=0.85 Score=34.12 Aligned_cols=78 Identities=12% Similarity=-0.060 Sum_probs=44.2
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCC
Q psy10891 18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEG 97 (142)
Q Consensus 18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 97 (142)
..|.+++|+|+....... .....+... .+ .--+|.||.|...+ .-.+-.++...+ .|+.+++ +|
T Consensus 252 ~pd~~iLVl~a~~g~d~~---~~a~~f~~~------~~-~~giIlTKlD~~~~---~G~~ls~~~~~~-~Pi~~i~--~G 315 (336)
T PRK14974 252 KPDLVIFVGDALAGNDAV---EQAREFNEA------VG-IDGVILTKVDADAK---GGAALSIAYVIG-KPILFLG--VG 315 (336)
T ss_pred CCceEEEeeccccchhHH---HHHHHHHhc------CC-CCEEEEeeecCCCC---ccHHHHHHHHHC-cCEEEEe--CC
Confidence 578999999987643211 112222100 12 34678999997541 122233344455 6788887 89
Q ss_pred CCHHHHHHHHHHHH
Q psy10891 98 LMVNDSMKFLLDVL 111 (142)
Q Consensus 98 ~~i~~l~~~l~~~~ 111 (142)
++++++...=...+
T Consensus 316 q~v~Dl~~~~~~~~ 329 (336)
T PRK14974 316 QGYDDLIPFDPDWF 329 (336)
T ss_pred CChhhcccCCHHHH
Confidence 99988765433333
No 361
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.60 E-value=0.86 Score=33.80 Aligned_cols=73 Identities=15% Similarity=0.075 Sum_probs=43.0
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCC
Q psy10891 18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEG 97 (142)
Q Consensus 18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 97 (142)
..+.+++|+|++... ..+... ..... .--+.-+|.||.|...+ .-.+..++...+ .|+.+++ +|
T Consensus 232 ~p~~~~LVl~a~~g~--~~~~~a-~~f~~-------~~~~~giIlTKlD~t~~---~G~~l~~~~~~~-~Pi~~v~--~G 295 (318)
T PRK10416 232 APHEVLLVLDATTGQ--NALSQA-KAFHE-------AVGLTGIILTKLDGTAK---GGVVFAIADELG-IPIKFIG--VG 295 (318)
T ss_pred CCceEEEEEECCCCh--HHHHHH-HHHHh-------hCCCCEEEEECCCCCCC---ccHHHHHHHHHC-CCEEEEe--CC
Confidence 467889999998542 222221 12210 11244788999995432 223334556666 6788888 88
Q ss_pred CCHHHHHHH
Q psy10891 98 LMVNDSMKF 106 (142)
Q Consensus 98 ~~i~~l~~~ 106 (142)
++++++-..
T Consensus 296 q~~~Dl~~~ 304 (318)
T PRK10416 296 EGIDDLQPF 304 (318)
T ss_pred CChhhCccC
Confidence 888777543
No 362
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=93.36 E-value=0.44 Score=30.65 Aligned_cols=59 Identities=10% Similarity=0.078 Sum_probs=37.4
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDL 67 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 67 (142)
|||+.- .......+..+|.++++.+.+ ..++......++.+.... ...++.+|.|+++.
T Consensus 51 D~p~~~--~~~~~~~l~~aD~vviv~~~~-~~s~~~~~~~l~~l~~~~-----~~~~~~lVvN~~~~ 109 (139)
T cd02038 51 DTGAGI--SDNVLDFFLAADEVIVVTTPE-PTSITDAYALIKKLAKQL-----RVLNFRVVVNRAES 109 (139)
T ss_pred ECCCCC--CHHHHHHHHhCCeEEEEcCCC-hhHHHHHHHHHHHHHHhc-----CCCCEEEEEeCCCC
Confidence 566532 333456788999999999876 345555444444443211 34577899999874
No 363
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=92.46 E-value=1.6 Score=31.71 Aligned_cols=62 Identities=19% Similarity=0.192 Sum_probs=45.2
Q ss_pred HhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCc
Q psy10891 13 RVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFI 87 (142)
Q Consensus 13 ~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~ 87 (142)
-..+.++|.+|+|-..+- -.+.+++..++.+.+ -++|..+|.||.+... . .++.++.+.++.
T Consensus 180 i~sl~~aD~ai~VTEPTp-~glhD~kr~~el~~~-------f~ip~~iViNr~~~g~----s-~ie~~~~e~gi~ 241 (284)
T COG1149 180 IASLKGADLAILVTEPTP-FGLHDLKRALELVEH-------FGIPTGIVINRYNLGD----S-EIEEYCEEEGIP 241 (284)
T ss_pred HHhhccCCEEEEEecCCc-cchhHHHHHHHHHHH-------hCCceEEEEecCCCCc----h-HHHHHHHHcCCC
Confidence 446789999999998873 455666666655543 3799999999996532 2 778899998853
No 364
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=92.38 E-value=0.49 Score=33.63 Aligned_cols=67 Identities=18% Similarity=0.146 Sum_probs=39.8
Q ss_pred CcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCC-CCEEEEEeCCCCCCCCCCHHHHHHHH
Q psy10891 3 EGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSP-IPCMLLANKCDLPHRQVDINDIECFY 81 (142)
Q Consensus 3 ~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~p~ilv~nK~D~~~~~~~~~~~~~~~ 81 (142)
||.|-|. +...+++|.+|+|+|.+-. |+...+...+.. . .-+ .++.+|+||.|-. ...+...+
T Consensus 143 AGiEHfg---Rg~~~~vD~vivVvDpS~~-sl~taeri~~L~-~------elg~k~i~~V~NKv~e~-----e~~~~~~~ 206 (255)
T COG3640 143 AGIEHFG---RGTIEGVDLVIVVVDPSYK-SLRTAERIKELA-E------ELGIKRIFVVLNKVDEE-----EELLRELA 206 (255)
T ss_pred cchhhhc---cccccCCCEEEEEeCCcHH-HHHHHHHHHHHH-H------HhCCceEEEEEeeccch-----hHHHHhhh
Confidence 4555444 3356799999999998753 444333322222 1 124 7899999999852 33444455
Q ss_pred HHcC
Q psy10891 82 KEHN 85 (142)
Q Consensus 82 ~~~~ 85 (142)
...+
T Consensus 207 ~~~~ 210 (255)
T COG3640 207 EELG 210 (255)
T ss_pred hccC
Confidence 5555
No 365
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=91.95 E-value=0.54 Score=33.90 Aligned_cols=48 Identities=17% Similarity=0.310 Sum_probs=30.4
Q ss_pred cCCEEEEEEeCCChhhHH----HHH-------HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 18 DAHGCIIMFDLTNQNSFK----NTL-------KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 18 ~ad~ii~v~d~~~~~s~~----~~~-------~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
-.+|||+++|+.+-...+ .+. .-+.++. ..-...+|+-+|.||+|+..
T Consensus 25 PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~----~~lg~~~PVYvv~Tk~D~l~ 83 (266)
T PF14331_consen 25 PLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQ----RTLGVRLPVYVVFTKCDLLP 83 (266)
T ss_pred CCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHH----HHhCCCCCeEeeeECCCccc
Confidence 469999999997532111 112 2223332 12346899999999999876
No 366
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=91.43 E-value=1.9 Score=30.82 Aligned_cols=49 Identities=4% Similarity=-0.023 Sum_probs=26.5
Q ss_pred cCCEEEEEEeCCChh-hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 18 DAHGCIIMFDLTNQN-SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 18 ~ad~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
..|++++|..++... +..+ ...+..+..... ..--.++++|.|++|...
T Consensus 114 ~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG--~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 114 TPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFG--PSIWRNAIVVLTHAASSP 163 (249)
T ss_pred CCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhC--hhhHhCEEEEEeCCccCC
Confidence 678888887665431 2221 123333332110 011257899999999754
No 367
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=91.08 E-value=0.55 Score=40.80 Aligned_cols=48 Identities=17% Similarity=0.286 Sum_probs=32.5
Q ss_pred cCCEEEEEEeCCChhhH---------HHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 18 DAHGCIIMFDLTNQNSF---------KNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 18 ~ad~ii~v~d~~~~~s~---------~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
-.++||+++|+.+-.+. ..++.-+.++... -...+|+-+|.||+|+..
T Consensus 201 plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~----lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 201 PLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ----LGARFPVYLVLTKADLLA 257 (1169)
T ss_pred CCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHH----hCCCCCEEEEEecchhhc
Confidence 57999999999754211 1233444444322 236899999999999875
No 368
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=91.02 E-value=1.2 Score=27.19 Aligned_cols=57 Identities=14% Similarity=0.074 Sum_probs=35.6
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCC-CCCEEEEEeC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGS-PIPCMLLANK 64 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-~~p~ilv~nK 64 (142)
|||+.-. ......+..+|.++++.+.+ +.+......++..+... ..+ ...+.+|+|+
T Consensus 49 Dtpp~~~--~~~~~~l~~aD~vlvvv~~~-~~s~~~~~~~~~~l~~~----~~~~~~~~~lVvNr 106 (106)
T cd03111 49 DLGRSLD--EVSLAALDQADRVFLVTQQD-LPSIRNAKRLLELLRVL----DYSLPAKIELVLNR 106 (106)
T ss_pred eCCCCcC--HHHHHHHHHcCeEEEEecCC-hHHHHHHHHHHHHHHHc----CCCCcCceEEEecC
Confidence 6666432 23445678899999999765 45777777776666421 222 3456677774
No 369
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=90.84 E-value=1.7 Score=29.81 Aligned_cols=70 Identities=11% Similarity=0.031 Sum_probs=39.6
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCC
Q psy10891 18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEG 97 (142)
Q Consensus 18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 97 (142)
..+-+++|.+++.... .+..+..... . -+ +-=++.||.|... ..-.+-.++...+ .|+-++| +|
T Consensus 113 ~~~~~~LVlsa~~~~~--~~~~~~~~~~-~------~~-~~~lIlTKlDet~---~~G~~l~~~~~~~-~Pi~~it--~G 176 (196)
T PF00448_consen 113 NPDEVHLVLSATMGQE--DLEQALAFYE-A------FG-IDGLILTKLDETA---RLGALLSLAYESG-LPISYIT--TG 176 (196)
T ss_dssp SSSEEEEEEEGGGGGH--HHHHHHHHHH-H------SS-TCEEEEESTTSSS---TTHHHHHHHHHHT-SEEEEEE--SS
T ss_pred CCccceEEEecccChH--HHHHHHHHhh-c------cc-CceEEEEeecCCC---CcccceeHHHHhC-CCeEEEE--CC
Confidence 5788889998876532 2222222221 1 12 2245699999643 3344555666667 5677766 66
Q ss_pred CCHHHH
Q psy10891 98 LMVNDS 103 (142)
Q Consensus 98 ~~i~~l 103 (142)
++|+++
T Consensus 177 q~V~Dl 182 (196)
T PF00448_consen 177 QRVDDL 182 (196)
T ss_dssp SSTTGE
T ss_pred CChhcC
Confidence 666443
No 370
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=90.62 E-value=2 Score=33.32 Aligned_cols=42 Identities=14% Similarity=-0.001 Sum_probs=25.0
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
..+-++||+|++....-. .....+.. .--+--+|.||.|...
T Consensus 212 ~p~e~lLVlda~~Gq~a~---~~a~~F~~-------~~~~~g~IlTKlD~~a 253 (429)
T TIGR01425 212 QPDNIIFVMDGSIGQAAE---AQAKAFKD-------SVDVGSVIITKLDGHA 253 (429)
T ss_pred CCcEEEEEeccccChhHH---HHHHHHHh-------ccCCcEEEEECccCCC
Confidence 578899999987543222 22233321 1124578899999743
No 371
>PHA02518 ParA-like protein; Provisional
Probab=90.51 E-value=2.5 Score=28.71 Aligned_cols=59 Identities=10% Similarity=-0.032 Sum_probs=34.6
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH---HHHHHHHHhcccCCCCCCC-EEEEEeCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL---KWKKDVDLKCTLSDGSPIP-CMLLANKCDL 67 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~---~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~ 67 (142)
||||. ...+....+..+|.+|+++..+. .++..+. .++..+.. ...+.+ ..++.|+.+-
T Consensus 83 D~p~~--~~~~~~~~l~~aD~viip~~ps~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~iv~n~~~~ 145 (211)
T PHA02518 83 DGAPQ--DSELARAALRIADMVLIPVQPSP-FDIWAAPDLVELIKARQE-----VTDGLPKFAFIISRAIK 145 (211)
T ss_pred eCCCC--ccHHHHHHHHHCCEEEEEeCCCh-hhHHHHHHHHHHHHHHHh-----hCCCCceEEEEEeccCC
Confidence 78876 34556777889999999998764 2333333 33333321 112444 3566677653
No 372
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=90.47 E-value=2.8 Score=31.33 Aligned_cols=93 Identities=12% Similarity=0.120 Sum_probs=54.8
Q ss_pred HhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC---------CCCCHHHHHHHHHH
Q psy10891 13 RVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---------RQVDINDIECFYKE 83 (142)
Q Consensus 13 ~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---------~~~~~~~~~~~~~~ 83 (142)
-+..++||++++|+|+....+. .+.+..++... ...-....|-+. ..|.+... ...+.+.+..++.+
T Consensus 135 lsv~R~ADlIiiVld~~~~~~~--~~~i~~ELe~~-GIrlnk~~p~V~-I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~E 210 (365)
T COG1163 135 LSVARNADLIIIVLDVFEDPHH--RDIIERELEDV-GIRLNKRPPDVT-IKKKESGGIRINGTGPLTHLDEDTVRAILRE 210 (365)
T ss_pred eeeeccCCEEEEEEecCCChhH--HHHHHHHHHhc-CeEecCCCCceE-EEEeccCCEEEecccccccCCHHHHHHHHHH
Confidence 3456899999999999976552 22333444321 111223334333 33333321 23678899999999
Q ss_pred cCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891 84 HNFIGWTETSTKEGLMVNDSMKFLLDV 110 (142)
Q Consensus 84 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 110 (142)
+++. -..+-....-.++++.+.+...
T Consensus 211 y~I~-nA~V~Ir~dvTlDd~id~l~~n 236 (365)
T COG1163 211 YRIH-NADVLIREDVTLDDLIDALEGN 236 (365)
T ss_pred hCcc-cceEEEecCCcHHHHHHHHhhc
Confidence 9964 4444445556778887777554
No 373
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=89.10 E-value=3.2 Score=32.27 Aligned_cols=62 Identities=10% Similarity=0.003 Sum_probs=34.2
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEee
Q psy10891 17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETS 93 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 93 (142)
..+|.+++|+|++... +.......+. ..++ .-+|.||.|...+ --.+-.+....+ .|+.+++
T Consensus 204 ~~pdevlLVvda~~gq---~av~~a~~F~--------~~l~i~gvIlTKlD~~a~---~G~~ls~~~~~~-~Pi~fig 266 (437)
T PRK00771 204 VKPDEVLLVIDATIGQ---QAKNQAKAFH--------EAVGIGGIIITKLDGTAK---GGGALSAVAETG-APIKFIG 266 (437)
T ss_pred hcccceeEEEeccccH---HHHHHHHHHH--------hcCCCCEEEEecccCCCc---ccHHHHHHHHHC-cCEEEEe
Confidence 3689999999987642 2122223322 1233 3567899996432 123333455555 5566665
No 374
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=88.80 E-value=4.3 Score=31.49 Aligned_cols=63 Identities=8% Similarity=0.014 Sum_probs=35.5
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeec
Q psy10891 18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETST 94 (142)
Q Consensus 18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 94 (142)
..+.+++|+|.... .+...+...+.... ++ .=+|.||.|...+ .-.+..++...+ .|+.+++.
T Consensus 212 ~p~e~lLVvda~tg---q~~~~~a~~f~~~v------~i-~giIlTKlD~~~~---~G~~lsi~~~~~-~PI~fi~~ 274 (428)
T TIGR00959 212 NPDEILLVVDAMTG---QDAVNTAKTFNERL------GL-TGVVLTKLDGDAR---GGAALSVRSVTG-KPIKFIGV 274 (428)
T ss_pred CCceEEEEEeccch---HHHHHHHHHHHhhC------CC-CEEEEeCccCccc---ccHHHHHHHHHC-cCEEEEeC
Confidence 57889999998754 33333444442111 22 3556999995331 223455566667 56666553
No 375
>KOG1486|consensus
Probab=88.43 E-value=1.5 Score=31.71 Aligned_cols=51 Identities=22% Similarity=0.313 Sum_probs=42.0
Q ss_pred CCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 55 PIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 55 ~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
-++++.|-||+|. +..++...+++.-+ .+.+|+...-|++.+++.+...+.
T Consensus 238 Y~~ClYvYnKID~----vs~eevdrlAr~Pn---svViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 238 YIKCLYVYNKIDQ----VSIEEVDRLARQPN---SVVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred EEEEEEEeeccce----ecHHHHHHHhcCCC---cEEEEeccccCHHHHHHHHHHHhc
Confidence 4789999999995 56778888887755 556799999999999999998875
No 376
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=88.33 E-value=8.4 Score=30.92 Aligned_cols=68 Identities=13% Similarity=0.153 Sum_probs=38.3
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCCCCH
Q psy10891 21 GCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMV 100 (142)
Q Consensus 21 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 100 (142)
..++|++.+. +..++...+..+. ...+.-+|+||.|... ..-.+..+....+ .|+.+++ +|+.|
T Consensus 460 a~lLVLpAts--s~~Dl~eii~~f~--------~~~~~gvILTKlDEt~---~lG~aLsv~~~~~-LPI~yvt--~GQ~V 523 (559)
T PRK12727 460 TSLLVLPANA--HFSDLDEVVRRFA--------HAKPQGVVLTKLDETG---RFGSALSVVVDHQ-MPITWVT--DGQRV 523 (559)
T ss_pred CcEEEEECCC--ChhHHHHHHHHHH--------hhCCeEEEEecCcCcc---chhHHHHHHHHhC-CCEEEEe--CCCCc
Confidence 4566777653 3444444444442 1235678999999743 2334444555666 5676666 66666
Q ss_pred -HHHH
Q psy10891 101 -NDSM 104 (142)
Q Consensus 101 -~~l~ 104 (142)
+++.
T Consensus 524 PeDL~ 528 (559)
T PRK12727 524 PDDLH 528 (559)
T ss_pred hhhhh
Confidence 4443
No 377
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=86.62 E-value=2 Score=28.28 Aligned_cols=41 Identities=22% Similarity=0.222 Sum_probs=24.7
Q ss_pred ccCCEEEEEEeCCChhhHH-HHHHHHHHHHHhcccCCCCCCCEEEEEeCCCC
Q psy10891 17 KDAHGCIIMFDLTNQNSFK-NTLKWKKDVDLKCTLSDGSPIPCMLLANKCDL 67 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 67 (142)
...+.+++++|.......- ....+..++. . --++|.||+|+
T Consensus 117 ~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~---------~-ad~ivlnk~dl 158 (158)
T cd03112 117 YLLDGVITLVDAKHANQHLDQQTEAQSQIA---------F-ADRILLNKTDL 158 (158)
T ss_pred eeeccEEEEEEhhHhHHHhhccHHHHHHHH---------H-CCEEEEecccC
Confidence 4689999999986543221 2223334442 1 22668999995
No 378
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=86.61 E-value=2.9 Score=33.39 Aligned_cols=57 Identities=12% Similarity=0.133 Sum_probs=38.5
Q ss_pred CCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEee--ccCCCCHHHHHHHHHHHHH
Q psy10891 54 SPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETS--TKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 54 ~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S--a~~~~~i~~l~~~l~~~~~ 112 (142)
-++|+++++||.|... ....+.++.+|.+.+. ++..+. ++=|.|-.++-..+++.+.
T Consensus 371 FGvPvVVAINKFd~DT-e~Ei~~I~~~c~e~Gv-~va~~~~~~~Gg~Gai~LA~aVveA~~ 429 (557)
T PRK13505 371 FGVPVVVAINKFVTDT-DAEIAALKELCEELGV-EVALSEVWAKGGEGGVELAEKVVELIE 429 (557)
T ss_pred cCCCEEEEEeCCCCCC-HHHHHHHHHHHHHcCC-CEEEecccccCCcchHHHHHHHHHHHh
Confidence 5899999999999743 2245668889999884 465433 3444566666666666554
No 379
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=86.53 E-value=7.1 Score=25.63 Aligned_cols=75 Identities=7% Similarity=-0.117 Sum_probs=44.0
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||.-.. .....+..+|.+|++++.+. .++..+..+++.+.. .......+|.|+.+... ....+....+
T Consensus 69 D~p~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~------~~~~~~~iv~N~~~~~~-~~~~~~~~~~ 138 (179)
T cd02036 69 DSPAGIER--GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEA------LGIKVVGVIVNRVRPDM-VEGGDMVEDI 138 (179)
T ss_pred ECCCCCcH--HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHH------cCCceEEEEEeCCcccc-cchhhHHHHH
Confidence 67765332 23445678999999998764 455555566655532 12234678999988643 1122223445
Q ss_pred HHHcC
Q psy10891 81 YKEHN 85 (142)
Q Consensus 81 ~~~~~ 85 (142)
.+.++
T Consensus 139 ~~~~~ 143 (179)
T cd02036 139 EEILG 143 (179)
T ss_pred HHHhC
Confidence 55566
No 380
>PRK10867 signal recognition particle protein; Provisional
Probab=85.81 E-value=8.8 Score=29.87 Aligned_cols=62 Identities=10% Similarity=0.044 Sum_probs=34.1
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeec
Q psy10891 18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETST 94 (142)
Q Consensus 18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 94 (142)
..+.+++|+|.... .+.......+. ..++ .=+|.||.|-..+ .-.+..+....+ .|+.+++.
T Consensus 213 ~p~evllVlda~~g---q~av~~a~~F~--------~~~~i~giIlTKlD~~~r---gG~alsi~~~~~-~PI~fig~ 275 (433)
T PRK10867 213 NPDEILLVVDAMTG---QDAVNTAKAFN--------EALGLTGVILTKLDGDAR---GGAALSIRAVTG-KPIKFIGT 275 (433)
T ss_pred CCCeEEEEEecccH---HHHHHHHHHHH--------hhCCCCEEEEeCccCccc---ccHHHHHHHHHC-cCEEEEeC
Confidence 57888999998653 23233333332 1222 2456799996432 122444556666 56666553
No 381
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=85.23 E-value=7.4 Score=29.53 Aligned_cols=53 Identities=15% Similarity=0.215 Sum_probs=40.8
Q ss_pred hHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 12 TRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 12 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
+..++.++|.+++|++.+- .+....++++..+.+ ......+..+|.|+.+...
T Consensus 233 t~~vL~~Sd~iviv~e~sl-~slR~ak~lld~l~~----~r~~~~~p~lv~n~~~~~~ 285 (366)
T COG4963 233 TRQVLSGSDEIVIVAEPSL-ASLRNAKELLDELKR----LRPNDPKPILVLNRVGVPK 285 (366)
T ss_pred HHHHHhcCCeEEEEecccH-HHHHHHHHHHHHHHH----hCCCCCCceEEeeecCCCC
Confidence 4678899999999999764 477777888888753 3445677889999988654
No 382
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=85.06 E-value=2.3 Score=27.77 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=29.4
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCD 66 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 66 (142)
||||.... ...++..||.++++....-.+.+...+ ..+ -..--+++.||.|
T Consensus 98 DtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~~k---~~~---------~~~~~~~~~~k~~ 148 (148)
T cd03114 98 ETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQAIK---AGI---------MEIADIVVVNKAD 148 (148)
T ss_pred ECCccChh---hhhHHHhCCEEEEEECCCchhHHHHhh---hhH---------hhhcCEEEEeCCC
Confidence 67885422 234778899999998876322222111 111 1233478899987
No 383
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=85.06 E-value=5.1 Score=24.04 Aligned_cols=34 Identities=6% Similarity=-0.095 Sum_probs=16.5
Q ss_pred CCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEe
Q psy10891 55 PIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTET 92 (142)
Q Consensus 55 ~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (142)
..-+|++.+-+=.. .....+...|+..+ .|++.+
T Consensus 48 ~aD~VIv~t~~vsH---~~~~~vk~~akk~~-ip~~~~ 81 (97)
T PF10087_consen 48 KADLVIVFTDYVSH---NAMWKVKKAAKKYG-IPIIYS 81 (97)
T ss_pred CCCEEEEEeCCcCh---HHHHHHHHHHHHcC-CcEEEE
Confidence 33455555443221 23445566666666 445554
No 384
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=84.81 E-value=15 Score=28.45 Aligned_cols=87 Identities=15% Similarity=0.187 Sum_probs=46.1
Q ss_pred CCCcchhhh----hhhHhhhc---cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCCCCC
Q psy10891 1 MTEGQERFT----WMTRVYYK---DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPHRQV 72 (142)
Q Consensus 1 Dt~G~e~~~----~~~~~~~~---~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~ 72 (142)
||||.-... .....++. ...-+++|++.+-. ...+...+..+. .++ -=++.||.|-..
T Consensus 306 Dt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~---------~~~~~~vI~TKlDet~--- 371 (424)
T PRK05703 306 DTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFS---------RLPLDGLIFTKLDETS--- 371 (424)
T ss_pred eCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhC---------CCCCCEEEEecccccc---
Confidence 788853332 11222333 23466777877543 233334434431 223 257899999643
Q ss_pred CHHHHHHHHHHcCCceEEEeeccCCCCH-HHHH
Q psy10891 73 DINDIECFYKEHNFIGWTETSTKEGLMV-NDSM 104 (142)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~l~ 104 (142)
..-.+..++...+ .|+.+++ +|++| +++.
T Consensus 372 ~~G~i~~~~~~~~-lPv~yit--~Gq~VpdDl~ 401 (424)
T PRK05703 372 SLGSILSLLIESG-LPISYLT--NGQRVPDDIK 401 (424)
T ss_pred cccHHHHHHHHHC-CCEEEEe--CCCCChhhhh
Confidence 2234555666667 5676666 66665 4544
No 385
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=84.77 E-value=9.9 Score=26.51 Aligned_cols=61 Identities=13% Similarity=0.070 Sum_probs=36.2
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP 68 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 68 (142)
|||+. ...+....+..+|.+++++..+ ..++..+...+..+. . ......++-+|.|+.+..
T Consensus 121 D~pp~--~~~~~~~~l~~ad~vii~~~~~-~~s~~~~~~~~~~l~---~-~~~~~~~~~iv~n~~~~~ 181 (246)
T TIGR03371 121 DVPRG--PSPITRQALAAADLVLVVVNAD-AACYATLHQQALALF---A-GSGPRIGPHFLINQFDPA 181 (246)
T ss_pred ECCCC--chHHHHHHHHhCCeEEEEeCCC-HHHHHHHHHHHHHHh---h-cccccccceEEeeccCcc
Confidence 56663 3345566778899999999875 345555442222222 1 011345567899998853
No 386
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=84.72 E-value=9.1 Score=25.26 Aligned_cols=60 Identities=8% Similarity=-0.055 Sum_probs=31.4
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEE
Q psy10891 18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTE 91 (142)
Q Consensus 18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (142)
..+.+++|++.....+. ..+...+.+.. + ..-+|.||.|...+ ...+...+...+ .|+.+
T Consensus 112 ~~~~~~lVv~~~~~~~~---~~~~~~~~~~~------~-~~~viltk~D~~~~---~g~~~~~~~~~~-~p~~~ 171 (173)
T cd03115 112 KPDEVLLVVDAMTGQDA---VNQAKAFNEAL------G-ITGVILTKLDGDAR---GGAALSIRAVTG-KPIKF 171 (173)
T ss_pred CCCeEEEEEECCCChHH---HHHHHHHHhhC------C-CCEEEEECCcCCCC---cchhhhhHHHHC-cCeEe
Confidence 48999999998654321 22333332111 2 24567799997542 122223555555 44443
No 387
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=84.33 E-value=4.3 Score=25.71 Aligned_cols=98 Identities=12% Similarity=0.074 Sum_probs=58.2
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-------CCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-------RQVD 73 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-------~~~~ 73 (142)
|++|.-+.. |-..+-++=++++-.-..+ ..+..+. . ..-.+++++.|.+-=. ....
T Consensus 17 Dlag~~rmq-----yp~~vRiIrv~CsGrvn~~-----fvl~Al~------~-GaDGV~v~GC~~geCHy~~GN~ka~rR 79 (132)
T COG1908 17 DLAGTSRMQ-----YPPNVRIIRVMCSGRVNPE-----FVLKALR------K-GADGVLVAGCKIGECHYISGNYKAKRR 79 (132)
T ss_pred hhhcccccc-----CCCceEEEEeeccCccCHH-----HHHHHHH------c-CCCeEEEecccccceeeeccchHHHHH
Confidence 555554432 3345555556665432222 2334443 1 2235788888876311 0112
Q ss_pred HHHHHHHHHHcCC----ceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 74 INDIECFYKEHNF----IGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 74 ~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
.+.+.++..++++ ..++++||..++.+.+.++.++..+.+--
T Consensus 80 ~~~lke~l~elgie~eRv~~~wiSa~E~ekf~e~~~efv~~i~~lG 125 (132)
T COG1908 80 MELLKELLKELGIEPERVRVLWISAAEGEKFAETINEFVERIKELG 125 (132)
T ss_pred HHHHHHHHHHhCCCcceEEEEEEehhhHHHHHHHHHHHHHHHHHhC
Confidence 3445556677776 34889999999999999999998887653
No 388
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=84.18 E-value=17 Score=28.04 Aligned_cols=88 Identities=14% Similarity=0.198 Sum_probs=49.0
Q ss_pred CCCcchhhhhh----hHhhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCE-EEEEeCCCCCCCCCC
Q psy10891 1 MTEGQERFTWM----TRVYYK--DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPC-MLLANKCDLPHRQVD 73 (142)
Q Consensus 1 Dt~G~e~~~~~----~~~~~~--~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D~~~~~~~ 73 (142)
||+|.-.+..+ +..++. ...-+.+|++++.. ..++...+..+. .+|+ =++.||.|-.. .
T Consensus 288 DTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~---------~~~i~~~I~TKlDET~---s 353 (407)
T COG1419 288 DTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFS---------LFPIDGLIFTKLDETT---S 353 (407)
T ss_pred eCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhc---------cCCcceeEEEcccccC---c
Confidence 89996555543 233332 23455566777643 455666666662 4554 56789999532 2
Q ss_pred HHHHHHHHHHcCCceEEEeeccCCCCH-HHHHH
Q psy10891 74 INDIECFYKEHNFIGWTETSTKEGLMV-NDSMK 105 (142)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~l~~ 105 (142)
.-.+-.+....+ .|+-+++ +|++| ++++.
T Consensus 354 ~G~~~s~~~e~~-~PV~YvT--~GQ~VPeDI~v 383 (407)
T COG1419 354 LGNLFSLMYETR-LPVSYVT--NGQRVPEDIVV 383 (407)
T ss_pred hhHHHHHHHHhC-CCeEEEe--CCCCCCchhhh
Confidence 333334444445 4555555 66665 55554
No 389
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=83.46 E-value=8 Score=28.86 Aligned_cols=75 Identities=15% Similarity=0.186 Sum_probs=42.4
Q ss_pred cCCEEEEEEeCCChhhHHH-HHHHH-HHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCC-ceEEEeec
Q psy10891 18 DAHGCIIMFDLTNQNSFKN-TLKWK-KDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNF-IGWTETST 94 (142)
Q Consensus 18 ~ad~ii~v~d~~~~~s~~~-~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa 94 (142)
..|++|-|+|+........ ....+ .++ ..-=+||+||+|+.+.. ..+..+.+.+..+- .+++.++.
T Consensus 116 ~ld~vvtvVDa~~~~~~~~~~~~~~~~Qi----------a~AD~ivlNK~Dlv~~~-~l~~l~~~l~~lnp~A~i~~~~~ 184 (323)
T COG0523 116 RLDGVVTVVDAAHFLEGLDAIAELAEDQL----------AFADVIVLNKTDLVDAE-ELEALEARLRKLNPRARIIETSY 184 (323)
T ss_pred eeceEEEEEeHHHhhhhHHHHHHHHHHHH----------HhCcEEEEecccCCCHH-HHHHHHHHHHHhCCCCeEEEccc
Confidence 4688999999977543332 22222 333 23348899999997632 24455555555542 34666565
Q ss_pred cCCCCHHHHH
Q psy10891 95 KEGLMVNDSM 104 (142)
Q Consensus 95 ~~~~~i~~l~ 104 (142)
.+.+..+++
T Consensus 185 -~~~~~~~ll 193 (323)
T COG0523 185 -GDVDLAELL 193 (323)
T ss_pred -cCCCHHHhh
Confidence 333433343
No 390
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=83.19 E-value=2.9 Score=29.94 Aligned_cols=29 Identities=14% Similarity=0.102 Sum_probs=24.6
Q ss_pred HcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 83 EHNFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 83 ~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
...+.|++..||+++.|+..+++.+...+
T Consensus 237 ~~~~~pv~~gSa~~~~G~~~ll~~~~~~~ 265 (268)
T cd04170 237 AGLLVPVLCGSALTNIGVRELLDALVHLL 265 (268)
T ss_pred hCCEEEEEEeeCCCCcCHHHHHHHHHHhC
Confidence 33456899999999999999999998775
No 391
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=83.08 E-value=5.7 Score=30.28 Aligned_cols=89 Identities=12% Similarity=-0.014 Sum_probs=43.8
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHH-HHHHHhcccCCCCCCCEEEEEeCCCC--CC------CCCC----HHHHHHHHH
Q psy10891 16 YKDAHGCIIMFDLTNQNSFKNTLKWK-KDVDLKCTLSDGSPIPCMLLANKCDL--PH------RQVD----INDIECFYK 82 (142)
Q Consensus 16 ~~~ad~ii~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~--~~------~~~~----~~~~~~~~~ 82 (142)
+..-|.+|++.+.. |.....|+ ..+.+ .+.|+.+|.+|+|. .. +... .+.++..|.
T Consensus 112 ~~~yD~fiii~s~r----f~~ndv~La~~i~~-------~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~ 180 (376)
T PF05049_consen 112 FYRYDFFIIISSER----FTENDVQLAKEIQR-------MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCL 180 (376)
T ss_dssp GGG-SEEEEEESSS------HHHHHHHHHHHH-------TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHH
T ss_pred ccccCEEEEEeCCC----CchhhHHHHHHHHH-------cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHH
Confidence 45679888877643 33333333 34432 47899999999995 10 1222 222333322
Q ss_pred ----HcCC--ceEEEeeccCCC--CHHHHHHHHHHHHHHHh
Q psy10891 83 ----EHNF--IGWTETSTKEGL--MVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 83 ----~~~~--~~~~~~Sa~~~~--~i~~l~~~l~~~~~~~~ 115 (142)
..+. .++|.+|..+-. ++..|.+.|...+..++
T Consensus 181 ~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K 221 (376)
T PF05049_consen 181 ENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK 221 (376)
T ss_dssp HHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred HHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence 2232 358889998765 46667777776665543
No 392
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=82.54 E-value=16 Score=26.50 Aligned_cols=67 Identities=7% Similarity=-0.014 Sum_probs=37.2
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCC
Q psy10891 18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEG 97 (142)
Q Consensus 18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 97 (142)
..+-+++|++++.. ..++..++..+. .--+-=++.||.|-.. ..-.+-.++...+ .|+.+++ +|
T Consensus 184 ~~~~~~LVl~a~~~--~~d~~~~~~~f~--------~~~~~~~I~TKlDet~---~~G~~l~~~~~~~-~Pi~~it--~G 247 (270)
T PRK06731 184 EPDYICLTLSASMK--SKDMIEIITNFK--------DIHIDGIVFTKFDETA---SSGELLKIPAVSS-APIVLMT--DG 247 (270)
T ss_pred CCCeEEEEEcCccC--HHHHHHHHHHhC--------CCCCCEEEEEeecCCC---CccHHHHHHHHHC-cCEEEEe--CC
Confidence 45678899987632 233334544442 1122367899999643 2223344555566 5566665 56
Q ss_pred CCH
Q psy10891 98 LMV 100 (142)
Q Consensus 98 ~~i 100 (142)
+++
T Consensus 248 q~v 250 (270)
T PRK06731 248 QDV 250 (270)
T ss_pred CCC
Confidence 555
No 393
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=82.07 E-value=11 Score=29.08 Aligned_cols=84 Identities=15% Similarity=0.160 Sum_probs=44.1
Q ss_pred CCCcchhhhh----hhHhhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCCCCCC
Q psy10891 1 MTEGQERFTW----MTRVYYK--DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPHRQVD 73 (142)
Q Consensus 1 Dt~G~e~~~~----~~~~~~~--~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~ 73 (142)
||||.-.+.. ....+.. ..+.+++|.+.+. ...++..++... ..++ --+|.||.|-.. .
T Consensus 292 DTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d~~~i~~~f---------~~l~i~glI~TKLDET~---~ 357 (407)
T PRK12726 292 DTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSADVMTILPKL---------AEIPIDGFIITKMDETT---R 357 (407)
T ss_pred ECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHHHHHHHHhc---------CcCCCCEEEEEcccCCC---C
Confidence 8999632221 1222322 3467777777632 233333443333 1233 367799999643 2
Q ss_pred HHHHHHHHHHcCCceEEEeeccCCCCHH
Q psy10891 74 INDIECFYKEHNFIGWTETSTKEGLMVN 101 (142)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 101 (142)
.-.+-.++...+ .|+.++| +|++|.
T Consensus 358 ~G~~Lsv~~~tg-lPIsylt--~GQ~Vp 382 (407)
T PRK12726 358 IGDLYTVMQETN-LPVLYMT--DGQNIT 382 (407)
T ss_pred ccHHHHHHHHHC-CCEEEEe--cCCCCC
Confidence 334445566666 5676666 566654
No 394
>KOG4273|consensus
Probab=81.58 E-value=2.9 Score=30.19 Aligned_cols=44 Identities=18% Similarity=0.391 Sum_probs=31.9
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCE-EEEEeCCCCCC
Q psy10891 19 AHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPC-MLLANKCDLPH 69 (142)
Q Consensus 19 ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D~~~ 69 (142)
..++++|||++....++.+..|+.... ....-+ +-++||.|...
T Consensus 79 l~a~vmvfdlse~s~l~alqdwl~htd-------insfdillcignkvdrvp 123 (418)
T KOG4273|consen 79 LQAFVMVFDLSEKSGLDALQDWLPHTD-------INSFDILLCIGNKVDRVP 123 (418)
T ss_pred eeeEEEEEeccchhhhHHHHhhccccc-------cccchhheeccccccccc
Confidence 467889999999888899999976542 123333 55789999754
No 395
>PTZ00258 GTP-binding protein; Provisional
Probab=81.10 E-value=3.1 Score=31.86 Aligned_cols=45 Identities=16% Similarity=0.068 Sum_probs=29.1
Q ss_pred CCCCEEEEEeCC--CCC-CCCCCHHHHHHHHHHcCCceEEEeeccCCC
Q psy10891 54 SPIPCMLLANKC--DLP-HRQVDINDIECFYKEHNFIGWTETSTKEGL 98 (142)
Q Consensus 54 ~~~p~ilv~nK~--D~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 98 (142)
...|+|+|+|+. |+. ......+.+..++...+..+++.+||+-..
T Consensus 219 t~KP~iyv~N~~E~D~~~~~~~~~~~l~~~~~~~~~~~~v~~sa~~E~ 266 (390)
T PTZ00258 219 TAKPMIYLVNMSEKDFIRQKNKWLAKIKEWVGEKGGGPIIPYSAEFEE 266 (390)
T ss_pred hcCCEEEEEECchhhhcccchHHHHHHHHHHHhcCCCeEEEeeHHHHH
Confidence 368999999999 752 222234455555656532568999987654
No 396
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=80.68 E-value=21 Score=27.76 Aligned_cols=66 Identities=9% Similarity=0.031 Sum_probs=36.9
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccC
Q psy10891 18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKE 96 (142)
Q Consensus 18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 96 (142)
..+.+++|+|++-. ..++..++..+. .++ -=+|.||.|-.. ..-.+-.++...+ .|+.+++ +
T Consensus 350 ~PdevlLVLsATtk--~~d~~~i~~~F~---------~~~idglI~TKLDET~---k~G~iLni~~~~~-lPIsyit--~ 412 (436)
T PRK11889 350 EPDYICLTLSASMK--SKDMIEIITNFK---------DIHIDGIVFTKFDETA---SSGELLKIPAVSS-APIVLMT--D 412 (436)
T ss_pred CCCeEEEEECCccC--hHHHHHHHHHhc---------CCCCCEEEEEcccCCC---CccHHHHHHHHHC-cCEEEEe--C
Confidence 45778888887532 233334444442 123 356799999643 2233444556666 5566655 5
Q ss_pred CCCH
Q psy10891 97 GLMV 100 (142)
Q Consensus 97 ~~~i 100 (142)
|+++
T Consensus 413 GQ~V 416 (436)
T PRK11889 413 GQDV 416 (436)
T ss_pred CCCC
Confidence 5554
No 397
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=80.49 E-value=20 Score=27.85 Aligned_cols=89 Identities=9% Similarity=-0.059 Sum_probs=48.1
Q ss_pred CCCcchhhhh----hhHhhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCCCCCC
Q psy10891 1 MTEGQERFTW----MTRVYY--KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPHRQVD 73 (142)
Q Consensus 1 Dt~G~e~~~~----~~~~~~--~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~ 73 (142)
||+|.-.... ....+. ....-.++|++.+.. ...+..++.... .++ -=+|.||.|-.. .
T Consensus 276 DTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~---------~~~~~~~I~TKlDEt~---~ 341 (420)
T PRK14721 276 DTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQ---------GHGIHGCIITKVDEAA---S 341 (420)
T ss_pred cCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhc---------CCCCCEEEEEeeeCCC---C
Confidence 7888554322 122222 124567788888743 233344444442 222 356899999643 2
Q ss_pred HHHHHHHHHHcCCceEEEeeccCCCCH-HHHHHH
Q psy10891 74 INDIECFYKEHNFIGWTETSTKEGLMV-NDSMKF 106 (142)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~l~~~ 106 (142)
.-.+-.++...+ .|+.+++ +|++| +++...
T Consensus 342 ~G~~l~~~~~~~-lPi~yvt--~Gq~VP~Dl~~a 372 (420)
T PRK14721 342 LGIALDAVIRRK-LVLHYVT--NGQKVPEDLHEA 372 (420)
T ss_pred ccHHHHHHHHhC-CCEEEEE--CCCCchhhhhhC
Confidence 334444566666 5576666 67776 555443
No 398
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=80.43 E-value=15 Score=24.72 Aligned_cols=85 Identities=14% Similarity=0.162 Sum_probs=55.7
Q ss_pred hccCCEEEEEEeCCChh-------hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCce
Q psy10891 16 YKDAHGCIIMFDLTNQN-------SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIG 88 (142)
Q Consensus 16 ~~~ad~ii~v~d~~~~~-------s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 88 (142)
++....=.+++|.++-- -...+..|+.++.+.. ..-.++||-|-.-... .....+...+.+.++ .|
T Consensus 36 Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~-----~~~~v~IvSNsaGs~~-d~~~~~a~~~~~~lg-Ip 108 (168)
T PF09419_consen 36 LKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQF-----GKDRVLIVSNSAGSSD-DPDGERAEALEKALG-IP 108 (168)
T ss_pred hhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHC-----CCCeEEEEECCCCccc-CccHHHHHHHHHhhC-Cc
Confidence 45566667778877521 1235667888886432 2225888888763322 345677888888999 66
Q ss_pred EEEeeccCCCCHHHHHHHH
Q psy10891 89 WTETSTKEGLMVNDSMKFL 107 (142)
Q Consensus 89 ~~~~Sa~~~~~i~~l~~~l 107 (142)
++.-+++...+..+++..+
T Consensus 109 vl~h~~kKP~~~~~i~~~~ 127 (168)
T PF09419_consen 109 VLRHRAKKPGCFREILKYF 127 (168)
T ss_pred EEEeCCCCCccHHHHHHHH
Confidence 8888899997777666544
No 399
>KOG3929|consensus
Probab=80.01 E-value=1.4 Score=31.97 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=24.6
Q ss_pred CCCCEEEEEeCCCCCCCCCCHHHHHHHH-------HHcCCceEEEeeccC
Q psy10891 54 SPIPCMLLANKCDLPHRQVDINDIECFY-------KEHNFIGWTETSTKE 96 (142)
Q Consensus 54 ~~~p~ilv~nK~D~~~~~~~~~~~~~~~-------~~~~~~~~~~~Sa~~ 96 (142)
..+|+++|+.|.|.-. ....+.....| -.+|.. .++.|.+.
T Consensus 189 ~P~PV~IVgsKYDvFq-~FesekRkH~C~~LRf~Ah~yGaa-LlmfSskM 236 (363)
T KOG3929|consen 189 FPVPVVIVGSKYDVFQ-DFESEKRKHICKTLRFVAHYYGAA-LLMFSSKM 236 (363)
T ss_pred CCCceEEeccchhhhc-cccHHHHHHHHHHHHHHHHHhhhH-HHHHHHhh
Confidence 4689999999999753 22333333333 344433 55667664
No 400
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=79.96 E-value=11 Score=28.39 Aligned_cols=69 Identities=14% Similarity=0.085 Sum_probs=39.6
Q ss_pred CEEEEEEeCCChh-hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCCC
Q psy10891 20 HGCIIMFDLTNQN-SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGL 98 (142)
Q Consensus 20 d~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 98 (142)
+=++++.|.+... ++...+. +.+. -++- =++.||.|-..+. -.+-.++..++ .|+.++. -|+
T Consensus 259 ~e~llvlDAttGqnal~QAk~-F~ea---------v~l~-GiIlTKlDgtAKG---G~il~I~~~l~-~PI~fiG--vGE 321 (340)
T COG0552 259 HEILLVLDATTGQNALSQAKI-FNEA---------VGLD-GIILTKLDGTAKG---GIILSIAYELG-IPIKFIG--VGE 321 (340)
T ss_pred ceEEEEEEcccChhHHHHHHH-HHHh---------cCCc-eEEEEecccCCCc---ceeeeHHHHhC-CCEEEEe--CCC
Confidence 3388888998764 4444333 3332 1222 4578999954321 12233556677 6687776 567
Q ss_pred CHHHHHH
Q psy10891 99 MVNDSMK 105 (142)
Q Consensus 99 ~i~~l~~ 105 (142)
++++|..
T Consensus 322 ~~~DL~~ 328 (340)
T COG0552 322 GYDDLRP 328 (340)
T ss_pred Chhhccc
Confidence 7777654
No 401
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=79.83 E-value=2.7 Score=26.13 Aligned_cols=33 Identities=30% Similarity=0.206 Sum_probs=20.5
Q ss_pred EEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccC
Q psy10891 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKE 96 (142)
Q Consensus 61 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 96 (142)
++||+|+.. ..+-+..+...+...+++.|||..
T Consensus 1 AaNK~D~~~---a~~ni~kl~~~~~~~~vVp~SA~a 33 (109)
T PF08438_consen 1 AANKADLPA---ADENIEKLKEKYPDEPVVPTSAAA 33 (109)
T ss_dssp EEE-GGG-S----HHHHHHHHHHHTT-EEEEE-HHH
T ss_pred CCccccccc---cHhHHHHHHHhCCCCceeeccHHH
Confidence 589999632 566677777777656788999863
No 402
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=79.47 E-value=6.1 Score=26.38 Aligned_cols=22 Identities=14% Similarity=0.036 Sum_probs=12.8
Q ss_pred EEEeeccCCCCHHHHHHHHHHH
Q psy10891 89 WTETSTKEGLMVNDSMKFLLDV 110 (142)
Q Consensus 89 ~~~~Sa~~~~~i~~l~~~l~~~ 110 (142)
...+...+|.|-..+++.|...
T Consensus 37 ~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 37 TSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4445566666666666666544
No 403
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=78.84 E-value=5.7 Score=26.08 Aligned_cols=44 Identities=16% Similarity=0.077 Sum_probs=34.6
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCC
Q psy10891 17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKC 65 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 65 (142)
..-++.|+-..++.+.|+.+-.+|+.+...+. +...+|+++||-
T Consensus 82 ~~y~vYivtaamdhp~s~~dK~eWl~E~FPFi-----~~qn~vfCgnKn 125 (180)
T COG4502 82 SIYNVYIVTAAMDHPKSCEDKGEWLKEKFPFI-----SYQNIVFCGNKN 125 (180)
T ss_pred hhheEEEEEeccCCchhHHHHHHHHHHHCCCC-----ChhhEEEecCCC
Confidence 44567777777778999999899998887665 566799999984
No 404
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=78.18 E-value=8.5 Score=31.87 Aligned_cols=50 Identities=8% Similarity=-0.061 Sum_probs=28.6
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
++|++|+|..++.......-..++..+...+- ..--..+|||.|..|...
T Consensus 201 gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG--~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 201 PPDIVLYVDRLDMQTRDSNDLPLLRTITDVLG--PSIWFNAIVTLTHAASAP 250 (763)
T ss_pred CCCEEEEEEeCCCccccHHHHHHHHHHHHHhC--HHhHcCEEEEEeCCccCC
Confidence 58999999887533221111234444433330 111246899999999764
No 405
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=76.63 E-value=39 Score=28.48 Aligned_cols=76 Identities=9% Similarity=-0.041 Sum_probs=41.2
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCC
Q psy10891 18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEG 97 (142)
Q Consensus 18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 97 (142)
..+-+++|+|.+.. .+.+......+... ...+ +-=+|.||.|-.. ..-.+-.+....+ .|+.+++ +|
T Consensus 293 ~p~e~~LVLsAt~~--~~~l~~i~~~f~~~----~~~~-i~glIlTKLDEt~---~~G~iL~i~~~~~-lPI~yit--~G 359 (767)
T PRK14723 293 RPVRRLLLLNAASH--GDTLNEVVHAYRHG----AGED-VDGCIITKLDEAT---HLGPALDTVIRHR-LPVHYVS--TG 359 (767)
T ss_pred CCCeEEEEECCCCc--HHHHHHHHHHHhhc----ccCC-CCEEEEeccCCCC---CccHHHHHHHHHC-CCeEEEe--cC
Confidence 45678899988743 22233333333210 0001 2356799999643 2333444566666 5677766 77
Q ss_pred CCH-HHHHHH
Q psy10891 98 LMV-NDSMKF 106 (142)
Q Consensus 98 ~~i-~~l~~~ 106 (142)
++| +++...
T Consensus 360 Q~VPdDL~~a 369 (767)
T PRK14723 360 QKVPEHLELA 369 (767)
T ss_pred CCChhhcccC
Confidence 777 666543
No 406
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=76.37 E-value=10 Score=26.90 Aligned_cols=96 Identities=13% Similarity=0.130 Sum_probs=52.4
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHH--HHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFK--NTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIE 78 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~ 78 (142)
||.|... .+....+..+|.+|+=+-.+..+.-+ ....|+.++. ......+|.-++.|+..-.........+.
T Consensus 90 DleG~as--~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~----~~~~~~ip~~Vl~Tr~~~~~~~~~~~~~~ 163 (231)
T PF07015_consen 90 DLEGGAS--ELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLE----KAERRDIPAAVLFTRVPAARLTRAQRIIS 163 (231)
T ss_pred eCCCCCc--hhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHH----HhhCCCCCeeEEEecCCcchhhHHHHHHH
Confidence 5555332 23445567899998877665332222 2235555553 12346799999999987422111111222
Q ss_pred HHHHHcCCceEEEeeccCCCCHHHHHH
Q psy10891 79 CFYKEHNFIGWTETSTKEGLMVNDSMK 105 (142)
Q Consensus 79 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 105 (142)
.+.. + .|++.+.-....-..++|.
T Consensus 164 e~~~--~-lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 164 EQLE--S-LPVLDTELHERDAFRAMFS 187 (231)
T ss_pred HHHh--c-CCccccccccHHHHHHHHH
Confidence 2232 3 5688877776655566655
No 407
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=75.24 E-value=40 Score=26.80 Aligned_cols=69 Identities=12% Similarity=0.012 Sum_probs=37.9
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCCCCH-
Q psy10891 22 CIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMV- 100 (142)
Q Consensus 22 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i- 100 (142)
.++|+|.+.. ...+........ ..-..-+|.||.|-.. ..-.+-.+...++ .|+.+++ +|++|
T Consensus 368 ~~LVLdAt~~--~~~l~~i~~~f~--------~~~~~g~IlTKlDet~---~~G~~l~i~~~~~-lPI~yvt--~GQ~VP 431 (484)
T PRK06995 368 RLLLLNATSH--GDTLNEVVQAYR--------GPGLAGCILTKLDEAA---SLGGALDVVIRYK-LPLHYVS--NGQRVP 431 (484)
T ss_pred eEEEEeCCCc--HHHHHHHHHHhc--------cCCCCEEEEeCCCCcc---cchHHHHHHHHHC-CCeEEEe--cCCCCh
Confidence 6788888643 222233333331 1123345789999643 3334445566666 5677666 77777
Q ss_pred HHHHHH
Q psy10891 101 NDSMKF 106 (142)
Q Consensus 101 ~~l~~~ 106 (142)
+++...
T Consensus 432 eDL~~a 437 (484)
T PRK06995 432 EDLHLA 437 (484)
T ss_pred hhhccC
Confidence 665443
No 408
>KOG1547|consensus
Probab=74.09 E-value=13 Score=26.90 Aligned_cols=69 Identities=14% Similarity=0.162 Sum_probs=39.9
Q ss_pred cCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC---CCCCHHHHHHHHHHcCCceEEEee
Q psy10891 18 DAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---RQVDINDIECFYKEHNFIGWTETS 93 (142)
Q Consensus 18 ~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---~~~~~~~~~~~~~~~~~~~~~~~S 93 (142)
..++|++.+..+. .|+..++ .++..+. .-+.+|-|+-|.|... +..-.+.++.-+..+++. ++.--
T Consensus 155 RVHcclyFi~ptG-hsLrplDieflkrLt--------~vvNvvPVIakaDtlTleEr~~FkqrI~~el~~~~i~-vYPq~ 224 (336)
T KOG1547|consen 155 RVHCCLYFIPPTG-HSLRPLDIEFLKRLT--------EVVNVVPVIAKADTLTLEERSAFKQRIRKELEKHGID-VYPQD 224 (336)
T ss_pred eEEEEEEEeCCCC-CccCcccHHHHHHHh--------hhheeeeeEeecccccHHHHHHHHHHHHHHHHhcCcc-ccccc
Confidence 4688888887764 2443332 3444443 3467888899999765 333344455556666743 55443
Q ss_pred ccC
Q psy10891 94 TKE 96 (142)
Q Consensus 94 a~~ 96 (142)
+.+
T Consensus 225 ~fd 227 (336)
T KOG1547|consen 225 SFD 227 (336)
T ss_pred ccc
Confidence 333
No 409
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=72.33 E-value=17 Score=22.26 Aligned_cols=45 Identities=13% Similarity=-0.089 Sum_probs=27.8
Q ss_pred hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCC
Q psy10891 14 VYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDL 67 (142)
Q Consensus 14 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 67 (142)
..+++||++|..++...+.+....+-=+... .++|++++.+....
T Consensus 57 ~~i~~~D~via~l~~~~~d~Gt~~ElG~A~a---------lgkpv~~~~~d~~~ 101 (113)
T PF05014_consen 57 EGIRECDIVIANLDGFRPDSGTAFELGYAYA---------LGKPVILLTEDDRP 101 (113)
T ss_dssp HHHHHSSEEEEEECSSS--HHHHHHHHHHHH---------TTSEEEEEECCCCT
T ss_pred HHHHHCCEEEEECCCCCCCCcHHHHHHHHHH---------CCCEEEEEEcCCcc
Confidence 3457899999999885554444443222222 37899888877653
No 410
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=72.11 E-value=18 Score=22.43 Aligned_cols=43 Identities=12% Similarity=0.109 Sum_probs=29.7
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCC
Q psy10891 17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKC 65 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 65 (142)
..+++..+|++.+ ....+.....+..+...+ .++|+.++.++.
T Consensus 35 ~~~~i~avvi~~d-~~~~~~~~~ll~~i~~~~-----~~iPVFl~~~~~ 77 (115)
T PF03709_consen 35 SFTDIAAVVISWD-GEEEDEAQELLDKIRERN-----FGIPVFLLAERD 77 (115)
T ss_dssp CTTTEEEEEEECH-HHHHHHHHHHHHHHHHHS-----TT-EEEEEESCC
T ss_pred hCCCeeEEEEEcc-cccchhHHHHHHHHHHhC-----CCCCEEEEecCC
Confidence 3677777777776 445555567777776554 799999998854
No 411
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=71.73 E-value=8.1 Score=27.94 Aligned_cols=28 Identities=14% Similarity=0.068 Sum_probs=24.2
Q ss_pred cCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 84 HNFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 84 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
..+.|++..||.++.|+..|++.+...+
T Consensus 240 ~~~~PV~~gSa~~~~Gi~~lld~i~~~~ 267 (270)
T cd01886 240 NKIVPVLCGSAFKNKGVQPLLDAVVDYL 267 (270)
T ss_pred CcEEEEEeCcCCCCcCHHHHHHHHHHhc
Confidence 3457888999999999999999998876
No 412
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=71.05 E-value=34 Score=24.13 Aligned_cols=63 Identities=17% Similarity=0.112 Sum_probs=37.5
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDL 67 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 67 (142)
||||... .+....+..+|.+|+.+..+ +.++.....++..+....+ ....+.+..++.|.++-
T Consensus 90 D~pp~~~--~~~~~al~~aD~vliP~~ps-~~d~~~~~~~~~~v~~~~~-~~~~~l~~~iv~~~~~~ 152 (231)
T PRK13849 90 DTHGGSS--ELNNTIIASSNLLLIPTMLT-PLDIDEALSTYRYVIELLL-SENLAIPTAILRQRVPV 152 (231)
T ss_pred eCCCCcc--HHHHHHHHHCCEEEEeccCc-HHHHHHHHHHHHHHHHHHH-HhCCCCCeEEEEEeccc
Confidence 7777553 44556677899999888764 3344444444333322111 12356788899999863
No 413
>CHL00175 minD septum-site determining protein; Validated
Probab=69.63 E-value=24 Score=25.31 Aligned_cols=58 Identities=9% Similarity=-0.049 Sum_probs=34.6
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDL 67 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 67 (142)
|||+.- .......+..+|.+++|++.+ +.+...+..++..+... ....+-+|.|+++.
T Consensus 133 Dtpp~~--~~~~~~~l~~aD~viiV~~p~-~~si~~~~~~~~~l~~~------~~~~~~lvvN~~~~ 190 (281)
T CHL00175 133 DCPAGI--DVGFINAIAPAQEAIVVTTPE-ITAIRDADRVAGLLEAN------GIYNVKLLVNRVRP 190 (281)
T ss_pred eCCCCC--CHHHHHHHHhcCeeEEEcCCC-hHHHHHHHHHHHHHHHc------CCCceEEEEeccCh
Confidence 566543 223344556799999998765 45666666665555421 12245678899864
No 414
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=69.58 E-value=5.5 Score=26.69 Aligned_cols=57 Identities=19% Similarity=0.279 Sum_probs=31.2
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHH-HHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHc
Q psy10891 18 DAHGCIIMFDLTNQNSFKNTLKWK-KDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEH 84 (142)
Q Consensus 18 ~ad~ii~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~ 84 (142)
..+.+|.|+|+............+ ..+ ..--+++.||+|+.+.....+......+..
T Consensus 113 ~~~~iI~vVDa~~~~~~~~~~~~~~~Qi----------~~ADvIvlnK~D~~~~~~~i~~~~~~ir~l 170 (178)
T PF02492_consen 113 RLDSIITVVDATNFDELENIPELLREQI----------AFADVIVLNKIDLVSDEQKIERVREMIREL 170 (178)
T ss_dssp SESEEEEEEEGTTHGGHTTHCHHHHHHH----------CT-SEEEEE-GGGHHHH--HHHHHHHHHHH
T ss_pred cccceeEEeccccccccccchhhhhhcc----------hhcCEEEEeccccCChhhHHHHHHHHHHHH
Confidence 578999999997754333333333 333 222378999999865222224444444443
No 415
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=69.39 E-value=9.7 Score=25.32 Aligned_cols=52 Identities=12% Similarity=0.045 Sum_probs=35.0
Q ss_pred hHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCC-CEEEEEeCCCCCC
Q psy10891 12 TRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPI-PCMLLANKCDLPH 69 (142)
Q Consensus 12 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-p~ilv~nK~D~~~ 69 (142)
....+..+|.+|++++.+. .+...+..++..+.... ... .+-+|.|+.+...
T Consensus 110 ~~~~l~~ad~viv~~~~~~-~~i~~~~~~~~~l~~~~-----~~~~~~~vv~N~v~~~~ 162 (195)
T PF01656_consen 110 VRNALAAADYVIVPIEPDP-SSIEGAERLIELLKRLG-----KKLKIIGVVINRVDPGN 162 (195)
T ss_dssp HHHHHHTSSEEEEEEESSH-HHHHHHHHHHHHHHHHT-----HTEEEEEEEEEEETSCC
T ss_pred HHHHHHhCceeeeecCCcH-HHHHHHHHHHHHHHHhc-----cccceEEEEEeeeCCCc
Confidence 4556678999999999764 45666666766665322 112 4578999998653
No 416
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=69.38 E-value=10 Score=28.86 Aligned_cols=43 Identities=12% Similarity=0.152 Sum_probs=29.6
Q ss_pred CCCCEEEEEeCCCCCCCCCC--HHHHHHHHHHcCCceEEEeeccCC
Q psy10891 54 SPIPCMLLANKCDLPHRQVD--INDIECFYKEHNFIGWTETSTKEG 97 (142)
Q Consensus 54 ~~~p~ilv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~ 97 (142)
...|+++++||.|....... ...+..++...+ .+++.+||.-.
T Consensus 205 t~KP~lyvaN~~e~~~~~~n~~~~~i~~~~~~~~-~~vV~~sA~~E 249 (372)
T COG0012 205 TAKPMLYVANVSEDDLANLNEYVKRLKELAAKEN-AEVVPVSAAIE 249 (372)
T ss_pred hcCCeEEEEECCcccccchhHHHHHHHHHhhhcC-CcEEEeeHHHH
Confidence 47899999999997542222 455666666666 45888898754
No 417
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=69.10 E-value=9.4 Score=29.02 Aligned_cols=44 Identities=9% Similarity=0.037 Sum_probs=29.5
Q ss_pred CCCCEEEEEeCCCCC--CCCCCHHHHHHHHHHcCCceEEEeeccCCC
Q psy10891 54 SPIPCMLLANKCDLP--HRQVDINDIECFYKEHNFIGWTETSTKEGL 98 (142)
Q Consensus 54 ~~~p~ilv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 98 (142)
...|+|+++|+.|.. ......+.+..++...+ .+++.+||.-..
T Consensus 198 t~KP~i~v~N~~e~~~~~~~~~~~~i~~~~~~~~-~~~i~~sa~~E~ 243 (364)
T PRK09601 198 TAKPVLYVANVDEDDLADGNPYVKKVREIAAKEG-AEVVVICAKIEA 243 (364)
T ss_pred ccCCeEEEEECCccccccccHHHHHHHHHHHHcC-CeEEEEEHHHHH
Confidence 358999999998851 11223455666776766 568999986443
No 418
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=68.34 E-value=27 Score=24.45 Aligned_cols=58 Identities=10% Similarity=-0.044 Sum_probs=36.0
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDL 67 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 67 (142)
|||+.-. ......+..+|.+|+++..+ ..++..+...+..+... ...++.++.|+++.
T Consensus 118 D~p~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~------~~~~~~iviN~~~~ 175 (261)
T TIGR01968 118 DCPAGIE--SGFRNAVAPADEAIVVTTPE-VSAVRDADRVIGLLEAK------GIEKIHLIVNRLRP 175 (261)
T ss_pred eCCCCcC--HHHHHHHHhCCeEEEEcCCC-cHHHHHHHHHHHHHHHc------CCCceEEEEeCcCc
Confidence 5665432 22344567899999999875 45666666666555421 12367788899874
No 419
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=67.55 E-value=16 Score=26.61 Aligned_cols=43 Identities=14% Similarity=0.248 Sum_probs=27.5
Q ss_pred cCCEEEEEEeCCCh-hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 18 DAHGCIIMFDLTNQ-NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 18 ~ad~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
..|+|+++++.+.. .+-.++ ..+..+. ..+++|.|+.|+|...
T Consensus 113 RVH~cLYfI~pt~~~L~~~Di-~~mk~Ls--------~~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 113 RVHACLYFIPPTGHGLKPLDI-EFMKRLS--------KRVNVIPVIAKADTLT 156 (281)
T ss_dssp -EEEEEEEE-TTSSSS-HHHH-HHHHHHT--------TTSEEEEEESTGGGS-
T ss_pred CcceEEEEEcCCCccchHHHH-HHHHHhc--------ccccEEeEEecccccC
Confidence 56999999998642 222222 3455553 5789999999999865
No 420
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=67.32 E-value=37 Score=23.23 Aligned_cols=62 Identities=11% Similarity=0.028 Sum_probs=37.4
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCCCCCCHHHHHHHHHHcCC
Q psy10891 18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPHRQVDINDIECFYKEHNF 86 (142)
Q Consensus 18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~~~~~~~~~~~~~~ 86 (142)
.||.+++++..+ ..+...+...+..+.... ...+.+ .-++.|+.+.. ........+.+.++.
T Consensus 141 ~ad~vliv~~p~-~~sl~~~~~l~~~i~~~~---~~~~~~~~gvv~N~~~~~---~~~~~~~~~~~~~~~ 203 (212)
T cd02117 141 KADEIYIVTSGE-FMALYAANNICKGIRKYA---KSGGVRLGGLICNSRNTD---RETELIDAFAERLGT 203 (212)
T ss_pred cCcEEEEEeccc-HHHHHHHHHHHHHHHHhC---cccCCcEEEEEEeCCCCc---cHHHHHHHHHHHcCC
Confidence 789999999764 445555555544443221 112444 45899999852 334556677777773
No 421
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=66.67 E-value=11 Score=27.18 Aligned_cols=27 Identities=15% Similarity=0.103 Sum_probs=23.7
Q ss_pred CCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 85 NFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 85 ~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
.+.|++..||.++.|+..|++.|..++
T Consensus 238 ~~~Pv~~gsa~~~~Gv~~Lld~i~~~~ 264 (267)
T cd04169 238 ELTPVFFGSALNNFGVQELLDALVDLA 264 (267)
T ss_pred CEEEEEecccccCcCHHHHHHHHHHHC
Confidence 346888999999999999999998876
No 422
>KOG1249|consensus
Probab=65.58 E-value=3.4 Score=32.81 Aligned_cols=87 Identities=13% Similarity=0.090 Sum_probs=46.4
Q ss_pred HhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCC---CCHHHHHHHHHHcC----
Q psy10891 13 RVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQ---VDINDIECFYKEHN---- 85 (142)
Q Consensus 13 ~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~---~~~~~~~~~~~~~~---- 85 (142)
....++.-++..|.|.++.+- .....+.... ....+++.+||+|+.... .....+... ..++
T Consensus 105 ~~~~~~~~~~~~vvd~~d~p~-----~i~p~~~~~v-----~~~~~~v~~n~vdl~p~d~~~~~c~rc~~l-~~~~~vk~ 173 (572)
T KOG1249|consen 105 SEKQENPALARKVVDLSDEPC-----SIDPLLTNDV-----GSPRLFVDGNKVDLLPKDSRPGYCQRCHSL-LHYGMIKA 173 (572)
T ss_pred hhhhhcccceEEeeecccCcc-----ccccchhhcc-----cCCceEeeccccccccccccchHHHHHHhh-cccceeec
Confidence 333445566677777776432 2223333222 233379999999997621 111111111 0011
Q ss_pred -----------CceEEEeeccCCCCHHHHHHHHHHH
Q psy10891 86 -----------FIGWTETSTKEGLMVNDSMKFLLDV 110 (142)
Q Consensus 86 -----------~~~~~~~Sa~~~~~i~~l~~~l~~~ 110 (142)
+.....++++++.|+++|+..+...
T Consensus 174 ~~~en~~p~~~f~~~~~~r~ktgyg~eeLI~~lvd~ 209 (572)
T KOG1249|consen 174 GGGENLNPDFDFDHVDLIRAKTGYGIEELIVMLVDI 209 (572)
T ss_pred ccccCCCcccchhhhhhhhhhhcccHHHHHHHhhhe
Confidence 1113357999999999988777643
No 423
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=65.20 E-value=60 Score=24.86 Aligned_cols=36 Identities=14% Similarity=0.018 Sum_probs=20.9
Q ss_pred EEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCCCCH
Q psy10891 59 MLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMV 100 (142)
Q Consensus 59 ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 100 (142)
=+|.||.|-.. ..-.+-.++...+ .|+.+++ +|++|
T Consensus 285 ~~I~TKlDEt~---~~G~~l~~~~~~~-lPi~yvt--~Gq~V 320 (374)
T PRK14722 285 GCILTKLDEAS---NLGGVLDTVIRYK-LPVHYVS--TGQKV 320 (374)
T ss_pred EEEEeccccCC---CccHHHHHHHHHC-cCeEEEe--cCCCC
Confidence 56789999643 2334444555556 4566655 55554
No 424
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.40 E-value=23 Score=31.32 Aligned_cols=49 Identities=14% Similarity=0.237 Sum_probs=31.4
Q ss_pred ccCCEEEEEEeCCChhhHHHHH------HH---HHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 17 KDAHGCIIMFDLTNQNSFKNTL------KW---KKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~~~~------~~---~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
+-.++||+.+|+.+-.+.+..+ .+ +.++ +..-....|+.++.||.|+..
T Consensus 213 ~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El----~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 213 RPLNGIILTLSVSDLLTADPAEREALARTLRARLQEL----RETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred CCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHH----HHhhccCCceEEEEecccccc
Confidence 5679999999987542222111 11 2333 222346899999999999875
No 425
>PTZ00258 GTP-binding protein; Provisional
Probab=63.91 E-value=16 Score=28.03 Aligned_cols=15 Identities=7% Similarity=0.016 Sum_probs=12.6
Q ss_pred hhccCCEEEEEEeCC
Q psy10891 15 YYKDAHGCIIMFDLT 29 (142)
Q Consensus 15 ~~~~ad~ii~v~d~~ 29 (142)
.++++|++++|+|..
T Consensus 112 ~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 112 HIRAVDGIYHVVRAF 126 (390)
T ss_pred HHHHCCEEEEEEeCC
Confidence 357899999999984
No 426
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=63.81 E-value=57 Score=24.25 Aligned_cols=72 Identities=13% Similarity=0.044 Sum_probs=36.4
Q ss_pred CCEEEEEEeCCChhhHHH-HHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcC-CceEEEeeccC
Q psy10891 19 AHGCIIMFDLTNQNSFKN-TLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHN-FIGWTETSTKE 96 (142)
Q Consensus 19 ad~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~ 96 (142)
.++++.|+|+.+...... ......++ ..--+||.||+|+... .+.+....+..+ ..+++.++ ..
T Consensus 123 l~~vvtvvDa~~~~~~~~~~~~~~~Qi----------~~AD~IvlnK~Dl~~~---~~~~~~~l~~lnp~a~i~~~~-~~ 188 (318)
T PRK11537 123 LDGVIALVDAVHADEQMNQFTIAQSQV----------GYADRILLTKTDVAGE---AEKLRERLARINARAPVYTVV-HG 188 (318)
T ss_pred eccEEEEEEhhhhhhhccccHHHHHHH----------HhCCEEEEeccccCCH---HHHHHHHHHHhCCCCEEEEec-cC
Confidence 588999999975432211 11112233 1223788999998652 234444444443 23344432 22
Q ss_pred CCCHHHHH
Q psy10891 97 GLMVNDSM 104 (142)
Q Consensus 97 ~~~i~~l~ 104 (142)
......+|
T Consensus 189 ~v~~~~l~ 196 (318)
T PRK11537 189 DIDLSLLF 196 (318)
T ss_pred CCCHHHHh
Confidence 23444444
No 427
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=62.16 E-value=25 Score=25.01 Aligned_cols=48 Identities=21% Similarity=0.125 Sum_probs=27.7
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCE-EEEEeCCCC
Q psy10891 16 YKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPC-MLLANKCDL 67 (142)
Q Consensus 16 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D~ 67 (142)
+..||.+|++...+ ..++..+...+..+.... ...+.++ -+|.|+++.
T Consensus 136 l~~aD~vlip~~p~-~~~l~~~~~~~~~i~~~~---~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 136 LNYADYALIVTDND-FDSIFAANRIAAAVREKA---KTYKVRLAGLIANRTDK 184 (267)
T ss_pred hhhcCEEEEEecCC-cccHHHHHHHHHHHHHHh---hccCCceEEEEEeCCCH
Confidence 56799999988764 334444444443332111 1245554 468899874
No 428
>PRK13695 putative NTPase; Provisional
Probab=61.30 E-value=44 Score=22.01 Aligned_cols=48 Identities=10% Similarity=-0.082 Sum_probs=28.2
Q ss_pred CCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 54 SPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 54 ~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
.+.|+|++.+|... ......+....+. .++.+ +.+|-+++...+...+
T Consensus 125 ~~~~~i~v~h~~~~------~~~~~~i~~~~~~-~i~~~---~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 125 SEKPVIATLHRRSV------HPFVQEIKSRPGG-RVYEL---TPENRDSLPFEILNRL 172 (174)
T ss_pred CCCeEEEEECchhh------HHHHHHHhccCCc-EEEEE---cchhhhhHHHHHHHHH
Confidence 46899999998532 1233334444443 35555 4556667777766644
No 429
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=61.27 E-value=32 Score=20.35 Aligned_cols=39 Identities=15% Similarity=-0.009 Sum_probs=24.9
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKK 42 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~ 42 (142)
|+|+... ......+..+|.++++++.+ ..+......+++
T Consensus 46 D~p~~~~--~~~~~~l~~ad~viv~~~~~-~~s~~~~~~~~~ 84 (104)
T cd02042 46 DTPPSLG--LLTRNALAAADLVLIPVQPS-PLDLDGLEKLLE 84 (104)
T ss_pred eCcCCCC--HHHHHHHHHCCEEEEeccCC-HHHHHHHHHHHH
Confidence 5666432 22335677899999999764 456666666654
No 430
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=59.84 E-value=12 Score=23.52 Aligned_cols=42 Identities=17% Similarity=0.243 Sum_probs=28.9
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
.+..+++.-|++-+.....+....+. .++|++.|.+|..|..
T Consensus 43 ~a~LVviA~Dv~P~~~~~~l~~lc~~----------~~vpyv~V~sk~~LG~ 84 (116)
T COG1358 43 KAKLVVIAEDVSPEELVKHLPALCEE----------KNVPYVYVGSKKELGK 84 (116)
T ss_pred CCcEEEEecCCCHHHHHHHHHHHHHh----------cCCCEEEeCCHHHHHH
Confidence 57888888887655454444443332 4899999999987753
No 431
>KOG1487|consensus
Probab=59.70 E-value=6 Score=28.88 Aligned_cols=52 Identities=17% Similarity=0.260 Sum_probs=37.8
Q ss_pred CCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 55 PIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 55 ~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
-+|++.+.||+|... .+++.- .+.+...+.+||.++-|+++++..+...+.-
T Consensus 231 yVp~iyvLNkIdsIS----iEELdi---i~~iphavpISA~~~wn~d~lL~~mweyL~L 282 (358)
T KOG1487|consen 231 YVPCIYVLNKIDSIS----IEELDI---IYTIPHAVPISAHTGWNFDKLLEKMWEYLKL 282 (358)
T ss_pred eeeeeeeecccceee----eeccce---eeeccceeecccccccchHHHHHHHhhcchh
Confidence 589999999999643 222211 1233346789999999999999999887754
No 432
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=59.67 E-value=11 Score=27.40 Aligned_cols=43 Identities=12% Similarity=0.081 Sum_probs=24.7
Q ss_pred CCCEEEEEeCCCC--CCCCCCHHHHHHHHHHcCCceEEEeeccCCC
Q psy10891 55 PIPCMLLANKCDL--PHRQVDINDIECFYKEHNFIGWTETSTKEGL 98 (142)
Q Consensus 55 ~~p~ilv~nK~D~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 98 (142)
..|+++++|+.|. ............++...+ .+++.+||.-..
T Consensus 195 ~KP~i~v~N~~e~d~~~~~~~~~~~~~~~~~~~-~~~i~~sa~~E~ 239 (274)
T cd01900 195 AKPVLYVANVSEDDLANGNNKVLKVREIAAKEG-AEVIPISAKIEA 239 (274)
T ss_pred cCCceeecccCHHHhccccHHHHHHHHHHhcCC-CeEEEeeHHHHH
Confidence 3799999999872 111111223334444555 458888886543
No 433
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=58.93 E-value=45 Score=23.16 Aligned_cols=57 Identities=11% Similarity=-0.007 Sum_probs=32.6
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDL 67 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~ 67 (142)
|||+.-. ......+..+|.++++++.+- .+............ ..+.+ +.++.|+.+.
T Consensus 115 D~p~~~~--~~~~~~l~~ad~vliv~~~~~-~s~~~~~~~~~~~~-------~~~~~~~~vv~N~~~~ 172 (251)
T TIGR01969 115 DAPAGLE--RDAVTALAAADELLLVVNPEI-SSITDALKTKIVAE-------KLGTAILGVVLNRVTR 172 (251)
T ss_pred eCCCccC--HHHHHHHHhCCeEEEEECCCC-chHHHHHHHHHHHH-------hcCCceEEEEEECCCc
Confidence 5665432 233445667999999998764 34444333322221 12344 4689999875
No 434
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=58.83 E-value=49 Score=21.67 Aligned_cols=62 Identities=13% Similarity=0.049 Sum_probs=38.9
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCC------CCC-CHHHHHHHHHHcCC
Q psy10891 17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPH------RQV-DINDIECFYKEHNF 86 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~------~~~-~~~~~~~~~~~~~~ 86 (142)
..+|.++++...+ +.+......++..+.+ .+.+ .-+|.|+.+... ... ....++.+++.++.
T Consensus 90 ~~ad~viiV~~p~-~~s~~~~~~~~~~l~~-------~~~~~~gvv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (169)
T cd02037 90 LPIDGAVIVTTPQ-EVALDDVRKAIDMFKK-------VNIPILGVVENMSYFVCPHCGKKIYIFGKGGGEKLAEELGV 159 (169)
T ss_pred cCCCeEEEEECCc-hhhHHHHHHHHHHHHh-------cCCCeEEEEEcCCcccCCCCCCcccccCCccHHHHHHHcCC
Confidence 4789999999765 4567777777777742 2344 357889887421 111 23466777777763
No 435
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=58.11 E-value=34 Score=24.35 Aligned_cols=60 Identities=13% Similarity=0.099 Sum_probs=34.6
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCE-EEEEeCCCCCCCCCCHHHHHHHHHHcC
Q psy10891 16 YKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPC-MLLANKCDLPHRQVDINDIECFYKEHN 85 (142)
Q Consensus 16 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D~~~~~~~~~~~~~~~~~~~ 85 (142)
+..||.+|+++.. +..++..+...+..+.... ...++++ -+|.|+.+. ......+.+.++
T Consensus 138 l~~AD~viip~~~-~~~sl~~~~~~~~~i~~~~---~~~~l~i~giv~N~~~~------~~~~~~~~~~~g 198 (270)
T PRK13185 138 LQYADYALIVTAN-DFDSIFAANRIAAAIQAKA---KNYKVRLAGVIANRSAG------TDLIDKFNEAVG 198 (270)
T ss_pred hhhCcEEEEEecC-chhhHHHHHHHHHHHHhhh---hccCCCceEEEEeccCh------HHHHHHHHHHcC
Confidence 4568999998865 4445655555554443211 2345664 378898763 233455566555
No 436
>KOG2865|consensus
Probab=58.06 E-value=32 Score=25.66 Aligned_cols=68 Identities=15% Similarity=0.184 Sum_probs=46.4
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC---CC---CCHHHHHHHHHHcCCceEEEee
Q psy10891 20 HGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---RQ---VDINDIECFYKEHNFIGWTETS 93 (142)
Q Consensus 20 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---~~---~~~~~~~~~~~~~~~~~~~~~S 93 (142)
.++.+-||+.|+.|....- .+ .++-|-|++......+ .. --.+.+..+|++.|...|+.+|
T Consensus 110 Qvl~~~fd~~DedSIr~vv-------k~------sNVVINLIGrd~eTknf~f~Dvn~~~aerlAricke~GVerfIhvS 176 (391)
T KOG2865|consen 110 QVLFMKFDLRDEDSIRAVV-------KH------SNVVINLIGRDYETKNFSFEDVNVHIAERLARICKEAGVERFIHVS 176 (391)
T ss_pred ceeeeccCCCCHHHHHHHH-------Hh------CcEEEEeeccccccCCcccccccchHHHHHHHHHHhhChhheeehh
Confidence 5666779999988876532 22 3677777887666544 12 2356677789999987899999
Q ss_pred ccCCCCHH
Q psy10891 94 TKEGLMVN 101 (142)
Q Consensus 94 a~~~~~i~ 101 (142)
+.. .++.
T Consensus 177 ~Lg-anv~ 183 (391)
T KOG2865|consen 177 CLG-ANVK 183 (391)
T ss_pred hcc-cccc
Confidence 986 4443
No 437
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=57.29 E-value=93 Score=24.42 Aligned_cols=64 Identities=17% Similarity=0.120 Sum_probs=33.2
Q ss_pred CEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCCC
Q psy10891 20 HGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGL 98 (142)
Q Consensus 20 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 98 (142)
.-+++|+|++... ..+...+.... .++ -=+|.||.|-.. ..-.+-.++...+ .|+.+++ +|+
T Consensus 334 ~e~~LVLsAt~~~--~~~~~~~~~f~---------~~~~~glIlTKLDEt~---~~G~il~i~~~~~-lPI~ylt--~GQ 396 (432)
T PRK12724 334 VENLLVLSSTSSY--HHTLTVLKAYE---------SLNYRRILLTKLDEAD---FLGSFLELADTYS-KSFTYLS--VGQ 396 (432)
T ss_pred CeEEEEEeCCCCH--HHHHHHHHHhc---------CCCCCEEEEEcccCCC---CccHHHHHHHHHC-CCEEEEe--cCC
Confidence 4577888877542 22223333331 222 356789999643 2223444555566 5566555 455
Q ss_pred CH
Q psy10891 99 MV 100 (142)
Q Consensus 99 ~i 100 (142)
+|
T Consensus 397 ~V 398 (432)
T PRK12724 397 EV 398 (432)
T ss_pred CC
Confidence 44
No 438
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=56.26 E-value=60 Score=21.95 Aligned_cols=46 Identities=15% Similarity=0.184 Sum_probs=28.3
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCC
Q psy10891 15 YYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLP 68 (142)
Q Consensus 15 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~ 68 (142)
....+|.+|+|.+... .+...+...++.+.. .+.+ +-+|.||.+..
T Consensus 147 ~~~~~D~vilV~~~~~-~~~~~~~~~~~~l~~-------~~~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 147 IARACDASILVTDAGE-IKKRDVQKAKEQLEQ-------TGSNFLGVVLNKVDIS 193 (204)
T ss_pred HHHhCCeEEEEEECCC-CCHHHHHHHHHHHHh-------CCCCEEEEEEeCcccc
Confidence 4467899999998754 344444454445431 2334 56788998853
No 439
>PRK10818 cell division inhibitor MinD; Provisional
Probab=56.06 E-value=61 Score=23.02 Aligned_cols=64 Identities=14% Similarity=0.031 Sum_probs=36.3
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhccc--CCCCCCCEEEEEeCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTL--SDGSPIPCMLLANKCDL 67 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~p~ilv~nK~D~ 67 (142)
|||+.-... ....+..+|.++++++.+ ..++..+..+++.+...... +...+.+..+|.|..+.
T Consensus 120 D~p~~~~~~--~~~~l~~ad~vivv~~p~-~~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~ 185 (270)
T PRK10818 120 DSPAGIETG--ALMALYFADEAIITTNPE-VSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (270)
T ss_pred eCCCCccHH--HHHHHHhCCeEEEEcCCC-chHHHhHHHHHHHHHHhhccccccccccceEEEEeccCH
Confidence 565544322 333467899999999876 34666666666555321111 01123345678888874
No 440
>KOG0781|consensus
Probab=56.01 E-value=34 Score=27.34 Aligned_cols=50 Identities=10% Similarity=0.036 Sum_probs=32.9
Q ss_pred hccCCEEEEEEeCCCh-hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 16 YKDAHGCIIMFDLTNQ-NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 16 ~~~ad~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
....|.|++|-.+--. +|.+.+..+-..+.. ...++.---++.+|+|..+
T Consensus 494 ~~~pd~i~~vgealvg~dsv~q~~~fn~al~~----~~~~r~id~~~ltk~dtv~ 544 (587)
T KOG0781|consen 494 VNKPDLILFVGEALVGNDSVDQLKKFNRALAD----HSTPRLIDGILLTKFDTVD 544 (587)
T ss_pred cCCCceEEEehhhhhCcHHHHHHHHHHHHHhc----CCCccccceEEEEeccchh
Confidence 3688999999877543 467777777666642 2223333356789999754
No 441
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=55.01 E-value=44 Score=26.34 Aligned_cols=41 Identities=10% Similarity=0.031 Sum_probs=27.9
Q ss_pred CCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccC
Q psy10891 54 SPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKE 96 (142)
Q Consensus 54 ~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 96 (142)
-+.|+|++.|-.+=. ...+.+....+...++ .|++.+++..
T Consensus 179 igKPFvillNs~~P~-s~et~~L~~eL~ekY~-vpVlpvnc~~ 219 (492)
T PF09547_consen 179 IGKPFVILLNSTKPY-SEETQELAEELEEKYD-VPVLPVNCEQ 219 (492)
T ss_pred hCCCEEEEEeCCCCC-CHHHHHHHHHHHHHhC-CcEEEeehHH
Confidence 479999999987633 2334555566677787 5688777654
No 442
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=54.46 E-value=85 Score=23.60 Aligned_cols=13 Identities=15% Similarity=0.294 Sum_probs=10.9
Q ss_pred cCCEEEEEEeCCC
Q psy10891 18 DAHGCIIMFDLTN 30 (142)
Q Consensus 18 ~ad~ii~v~d~~~ 30 (142)
..|++|.|+|+.+
T Consensus 123 ~l~~vvtvVDa~~ 135 (341)
T TIGR02475 123 TVDGVVTVVDGPA 135 (341)
T ss_pred EeeeEEEEEECch
Confidence 5688999999974
No 443
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=54.43 E-value=98 Score=23.84 Aligned_cols=69 Identities=10% Similarity=0.072 Sum_probs=39.1
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCC-CEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCCCC
Q psy10891 21 GCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPI-PCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLM 99 (142)
Q Consensus 21 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 99 (142)
-+++|+|++.. ...+...+.... .+ +-=++.||.|-.. ..-.+-.++...+ .|+.+++ +|++
T Consensus 288 e~~LVlsat~~--~~~~~~~~~~~~---------~~~~~~~I~TKlDet~---~~G~~l~~~~~~~-~Pi~yit--~Gq~ 350 (388)
T PRK12723 288 EFHLAVSSTTK--TSDVKEIFHQFS---------PFSYKTVIFTKLDETT---CVGNLISLIYEMR-KEVSYVT--DGQI 350 (388)
T ss_pred eEEEEEcCCCC--HHHHHHHHHHhc---------CCCCCEEEEEeccCCC---cchHHHHHHHHHC-CCEEEEe--CCCC
Confidence 57888988765 233334444431 22 3357899999643 2333444555566 5566666 6777
Q ss_pred H-HHHHHH
Q psy10891 100 V-NDSMKF 106 (142)
Q Consensus 100 i-~~l~~~ 106 (142)
+ +++...
T Consensus 351 vPeDl~~~ 358 (388)
T PRK12723 351 VPHNISIA 358 (388)
T ss_pred ChhhhhhC
Confidence 7 555443
No 444
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=53.55 E-value=40 Score=24.15 Aligned_cols=47 Identities=9% Similarity=0.012 Sum_probs=29.3
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCC
Q psy10891 15 YYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKC 65 (142)
Q Consensus 15 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 65 (142)
....+|.++.+|+.....--..+...++-+ ..+..++.|+.+|-|--
T Consensus 151 aAA~adfVi~~YNP~s~~R~~~~~~a~eil----~~~r~~~tpVgivrnag 197 (249)
T COG1010 151 AAAEADFVIALYNPISKRRPEQLGRAFEIL----REHRSPDTPVGIVRNAG 197 (249)
T ss_pred HHhhCCEEEEEECCccccchHHHHHHHHHH----HHhcCCCCcEEEEecCC
Confidence 346899999999886543222333333333 22345789999888754
No 445
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=53.30 E-value=17 Score=22.79 Aligned_cols=40 Identities=20% Similarity=0.179 Sum_probs=23.4
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCC
Q psy10891 18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDL 67 (142)
Q Consensus 18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 67 (142)
.+-++|+.-|++.......+..|... .++|++.+++|.++
T Consensus 42 ka~LVilA~D~s~~~~~~~i~~lc~~----------~~Ip~~~~~sk~eL 81 (117)
T TIGR03677 42 IAKLVVIAEDVEPPEIVAHLPALCEE----------KGIPYVYVKKKEDL 81 (117)
T ss_pred CccEEEEeCCCCcHHHHHHHHHHHHH----------cCCCEEEeCCHHHH
Confidence 35666666665543333444443332 47999988888765
No 446
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=49.73 E-value=59 Score=23.09 Aligned_cols=48 Identities=10% Similarity=0.115 Sum_probs=27.7
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCE-EEEEeCCCC
Q psy10891 16 YKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPC-MLLANKCDL 67 (142)
Q Consensus 16 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D~ 67 (142)
+.-||.+++++.. +..++..+...+..+.... ...++++ .+|.|+.+.
T Consensus 136 l~aAD~vlip~~~-~~~sl~~~~~l~~~i~~~~---~~~~l~~~gIV~N~~~~ 184 (268)
T TIGR01281 136 LQYADYALVVAAN-DFDALFAANRIAASVQEKA---KNYDVRLAGIIGNRSDA 184 (268)
T ss_pred hhhcCEEEEEecC-chhHHHHHHHHHHHHHHHh---hcCCCceEEEEEeCCCh
Confidence 5678999998765 3445555544444443211 1245553 578899874
No 447
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=49.31 E-value=57 Score=24.94 Aligned_cols=43 Identities=16% Similarity=0.235 Sum_probs=28.6
Q ss_pred cCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 18 DAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 18 ~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
..|+|++.+.++.- .+..++ ..+..+. ..+.+|-|+.|.|...
T Consensus 133 RVH~cLYFI~Ptgh-~l~~~DIe~Mk~ls--------~~vNlIPVI~KaD~lT 176 (373)
T COG5019 133 RVHACLYFIRPTGH-GLKPLDIEAMKRLS--------KRVNLIPVIAKADTLT 176 (373)
T ss_pred ceEEEEEEecCCCC-CCCHHHHHHHHHHh--------cccCeeeeeeccccCC
Confidence 56999999987642 222222 3344443 5788999999999865
No 448
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=48.76 E-value=38 Score=23.03 Aligned_cols=47 Identities=13% Similarity=0.215 Sum_probs=22.7
Q ss_pred hhHhhhccCCEEEEEEeCC---ChhhHHH-HHHHHHHHHHhcccCCCCCCCEEEEE
Q psy10891 11 MTRVYYKDAHGCIIMFDLT---NQNSFKN-TLKWKKDVDLKCTLSDGSPIPCMLLA 62 (142)
Q Consensus 11 ~~~~~~~~ad~ii~v~d~~---~~~s~~~-~~~~~~~~~~~~~~~~~~~~p~ilv~ 62 (142)
..-.++.+.++-++++|+. ++..|.. +..++..++.. .+++|+++|-
T Consensus 50 ~~a~~ia~~~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~-----hP~tPIllv~ 100 (178)
T PF14606_consen 50 EVADLIAEIDADLIVLDCGPNMSPEEFRERLDGFVKTIREA-----HPDTPILLVS 100 (178)
T ss_dssp HHHHHHHHS--SEEEEEESHHCCTTTHHHHHHHHHHHHHTT------SSS-EEEEE
T ss_pred HHHHHHhcCCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHh-----CCCCCEEEEe
Confidence 3444555444445555543 2334433 44556666432 3789988876
No 449
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=46.39 E-value=97 Score=21.42 Aligned_cols=67 Identities=16% Similarity=0.105 Sum_probs=40.2
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHHhccc-CCCCCCCEEEEEeCCCCCC--CCCCHHHHHHHHHHc
Q psy10891 18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTL-SDGSPIPCMLLANKCDLPH--RQVDINDIECFYKEH 84 (142)
Q Consensus 18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~p~ilv~nK~D~~~--~~~~~~~~~~~~~~~ 84 (142)
+.|+++++-|+.+.......+.|.+.+.++.+. ....+.|++.|.---|... .....+.+..+.+.+
T Consensus 42 ~PD~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG~~~~~~~~~~v~RF~~~F 111 (195)
T cd08166 42 QPDIVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIGGEEEDPIESKIRRFEKYF 111 (195)
T ss_pred CCCEEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcCCCCCCcCHHHHHHHHHhh
Confidence 789999999999876544444566555443321 1134677654444446653 224466677776666
No 450
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=44.42 E-value=29 Score=21.92 Aligned_cols=40 Identities=20% Similarity=0.199 Sum_probs=23.3
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCC
Q psy10891 18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDL 67 (142)
Q Consensus 18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 67 (142)
.+-++|+.-|++.......+..|.+. .++|++.+++|.+|
T Consensus 46 kakLVilA~D~s~~~i~~~~~~lc~~----------~~Vp~~~~~tk~eL 85 (122)
T PRK04175 46 IAKLVVIAEDVDPEEIVAHLPLLCEE----------KKIPYVYVPSKKDL 85 (122)
T ss_pred CccEEEEeCCCChHHHHHHHHHHHHH----------cCCCEEEECCHHHH
Confidence 45566666665443223444444333 48999988888665
No 451
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=41.85 E-value=67 Score=19.66 Aligned_cols=40 Identities=10% Similarity=-0.012 Sum_probs=23.6
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEe
Q psy10891 18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63 (142)
Q Consensus 18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n 63 (142)
++|++.+ +.+....+..+..+...++... ..++++++.|.
T Consensus 50 ~pdvV~i--S~~~~~~~~~~~~~i~~l~~~~----~~~~~i~vGG~ 89 (119)
T cd02067 50 DADAIGL--SGLLTTHMTLMKEVIEELKEAG----LDDIPVLVGGA 89 (119)
T ss_pred CCCEEEE--eccccccHHHHHHHHHHHHHcC----CCCCeEEEECC
Confidence 4565554 4455556777788888886322 12566666554
No 452
>KOG2743|consensus
Probab=41.17 E-value=36 Score=25.58 Aligned_cols=13 Identities=15% Similarity=0.365 Sum_probs=10.6
Q ss_pred cCCEEEEEEeCCC
Q psy10891 18 DAHGCIIMFDLTN 30 (142)
Q Consensus 18 ~ad~ii~v~d~~~ 30 (142)
..|+++-|+|+-+
T Consensus 177 kLDGIVTvvD~K~ 189 (391)
T KOG2743|consen 177 KLDGIVTVVDAKH 189 (391)
T ss_pred eeeeEEEEEehhh
Confidence 4699999999854
No 453
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=41.17 E-value=40 Score=22.38 Aligned_cols=47 Identities=13% Similarity=-0.099 Sum_probs=27.5
Q ss_pred hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeC
Q psy10891 14 VYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANK 64 (142)
Q Consensus 14 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 64 (142)
.-+..||++|++.-.-+..---.+++|+..+. ...-.++|++++.+-
T Consensus 64 ~~i~~AD~iIi~tP~Y~~s~~~~LKn~lD~~~----~~~l~~K~~~~v~~~ 110 (174)
T TIGR03566 64 QAIESADLLVVGSPVYRGSYTGLFKHLFDLVD----PNALIGKPVLLAATG 110 (174)
T ss_pred HHHHHCCEEEEECCcCcCcCcHHHHHHHHhcC----HhHhCCCEEEEEEec
Confidence 34568999999876655422233445554431 112257888888774
No 454
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=40.14 E-value=1.7e+02 Score=23.58 Aligned_cols=57 Identities=9% Similarity=0.058 Sum_probs=37.3
Q ss_pred CCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEe--eccCCCCHHHHHHHHHHHH
Q psy10891 53 GSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTET--STKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 53 ~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~--Sa~~~~~i~~l~~~l~~~~ 111 (142)
.-++|+|+.+|+..... ....+.+..+|...+. ++..+ =++=|.|-.+|-..++..+
T Consensus 354 ~fg~p~VVaiN~F~~Dt-~~Ei~~v~~~~~~~g~-~~~~~~~~~~GG~Ga~eLA~~Vi~a~ 412 (524)
T cd00477 354 KFGVPVVVAINKFSTDT-DAELALVRKLAEEAGA-FVAVSEHWAEGGKGAVELAEAVIEAC 412 (524)
T ss_pred HcCCCeEEEecCCCCCC-HHHHHHHHHHHHHcCC-CEEEehhhhhhhhhHHHHHHHHHHHh
Confidence 35899999999986422 2234556777888884 34443 3444556777777777655
No 455
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=39.57 E-value=1e+02 Score=19.71 Aligned_cols=59 Identities=7% Similarity=-0.107 Sum_probs=31.2
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHc
Q psy10891 18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEH 84 (142)
Q Consensus 18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~ 84 (142)
..|.+++.+-.++......++..+..+. ++.+++++...............+..+++++
T Consensus 50 ~~d~vvi~lGtNd~~~~~nl~~ii~~~~--------~~~~ivlv~~~~~~~~~~~~n~~~~~~a~~~ 108 (150)
T cd01840 50 LRKTVVIGLGTNGPFTKDQLDELLDALG--------PDRQVYLVNPHVPRPWEPDVNAYLLDAAKKY 108 (150)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHcC--------CCCEEEEEECCCCcchHHHHHHHHHHHHHHC
Confidence 5688888888777655555555444431 3466777666532111111223344456666
No 456
>PF10622 Ehbp: Energy-converting hydrogenase B subunit P (EhbP); InterPro: IPR019597 Ehb (energy-converting hydrogenase B) is an methanogenic archaeal enzyme that functions in one of the metabolic pathways involved in methanol reduction to methane. This entry contains subunit P of Ehb.
Probab=39.37 E-value=76 Score=18.21 Aligned_cols=46 Identities=22% Similarity=0.144 Sum_probs=23.1
Q ss_pred EEEEEeCCCCCC----CCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHH
Q psy10891 58 CMLLANKCDLPH----RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFL 107 (142)
Q Consensus 58 ~ilv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 107 (142)
-++|+|+.|-.- ...+.+.++ --+.+|.. ++.++ ...+.-.+|...
T Consensus 22 NvIV~Npt~EpIKidvPv~d~~WIE-~Hr~LGL~-vvPv~--~~ddfv~~fk~~ 71 (78)
T PF10622_consen 22 NVIVGNPTDEPIKIDVPVYDEEWIE-EHRKLGLI-VVPVS--EDDDFVGMFKMV 71 (78)
T ss_pred cEEEeCCCCCCEEeeccccCHHHHH-HHHhCCeE-EEecc--ccccHHHHHHHH
Confidence 488999988543 222333332 23444532 55555 444555555433
No 457
>PF09005 DUF1897: Domain of unknown function (DUF1897); InterPro: IPR015096 This domain is found in Psi proteins produced by Drosophila, and in various eukaryotic hypothetical proteins. It has no known function. ; PDB: 2BN6_A 2BN5_A.
Probab=39.15 E-value=14 Score=18.36 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=8.6
Q ss_pred CcchhhhhhhHhhhcc
Q psy10891 3 EGQERFTWMTRVYYKD 18 (142)
Q Consensus 3 ~G~e~~~~~~~~~~~~ 18 (142)
.||.+|+..|..||+.
T Consensus 6 ~gq~DYSaqW~eYYr~ 21 (38)
T PF09005_consen 6 GGQPDYSAQWAEYYRQ 21 (38)
T ss_dssp ------CCHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHH
Confidence 5788999999999875
No 458
>PRK00007 elongation factor G; Reviewed
Probab=38.70 E-value=52 Score=27.31 Aligned_cols=31 Identities=13% Similarity=-0.010 Sum_probs=27.0
Q ss_pred CCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 85 NFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 85 ~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
.+.|++..||.++.|+..|++.|+..+....
T Consensus 253 ~~~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~ 283 (693)
T PRK00007 253 EIVPVLCGSAFKNKGVQPLLDAVVDYLPSPL 283 (693)
T ss_pred cEEEEEecccccCcCHHHHHHHHHHHCCChh
Confidence 4567888999999999999999999997654
No 459
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=38.54 E-value=1.5e+02 Score=21.69 Aligned_cols=48 Identities=21% Similarity=0.225 Sum_probs=28.3
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCE-EEEEeCCCC
Q psy10891 16 YKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPC-MLLANKCDL 67 (142)
Q Consensus 16 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D~ 67 (142)
+..||.+|++.+.+ +.++..+...+..+.... ...+.+. -++.|+.+.
T Consensus 136 l~~AD~viIp~~p~-~~sl~~~~~l~~~i~~~~---~~~~l~~~gvv~n~~~~ 184 (290)
T CHL00072 136 LNYADYCIIITDNG-FDALFAANRIAASVREKA---RTHPLRLAGLVGNRTSK 184 (290)
T ss_pred hhcCCEEEEEecCC-HHHHHHHHHHHHHHHHHh---ccCCCceEEEEEeCCCc
Confidence 45689999988764 456666555554443221 1234443 478898873
No 460
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=38.01 E-value=2.1e+02 Score=22.92 Aligned_cols=95 Identities=14% Similarity=0.117 Sum_probs=55.6
Q ss_pred ccCCEEEEEEeCCCh-------------hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHH
Q psy10891 17 KDAHGCIIMFDLTNQ-------------NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKE 83 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~-------------~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~ 83 (142)
-..|++++|..+.-. +..+.++.=+.-+.++...-..-++|+++.+||.-. +.......+..++.+
T Consensus 318 l~PdavVlVATvRALK~hGG~~~~~l~~Env~avk~G~aNL~~Hi~Nikkfgvp~VVAIN~F~t-Dt~~Ei~~i~~~~~~ 396 (554)
T COG2759 318 LKPDAVVLVATVRALKMHGGVPKEDLTEENVDAVKKGFANLLKHIENIKKFGVPVVVAINKFPT-DTEAEIAAIEKLCEE 396 (554)
T ss_pred CCCCeEEEeeehHHHHHcCCCChHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCeEEEeccCCC-CCHHHHHHHHHHHHH
Confidence 357899998876411 111222222222222222223458999999999753 222345556777888
Q ss_pred cCCceEE--EeeccCCCCHHHHHHHHHHHHHH
Q psy10891 84 HNFIGWT--ETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 84 ~~~~~~~--~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
++. ++. ++=++-+.|-.+|-.+++..+-+
T Consensus 397 ~gv-~~~ls~vwakGg~Gg~eLA~kVv~~~~~ 427 (554)
T COG2759 397 HGV-EVALSEVWAKGGEGGIELAKKVVEAIEQ 427 (554)
T ss_pred cCC-ceeehhhhhccCccHHHHHHHHHHHHhC
Confidence 884 343 34567777888888888777754
No 461
>PF10036 RLL: Putative carnitine deficiency-associated protein; InterPro: IPR019265 This family of proteins conserved from nematodes to humans is of approximately 250 amino acids. It is purported to be carnitine deficiency-associated protein but this could not be confirmed. It carries a characteristic RLL sequence-motif. The function is unknown.
Probab=37.98 E-value=64 Score=23.15 Aligned_cols=73 Identities=12% Similarity=0.270 Sum_probs=44.7
Q ss_pred EeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHH
Q psy10891 26 FDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMK 105 (142)
Q Consensus 26 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 105 (142)
++..++..|..+-.|+++..- +.+...+.-.+ .+.. .....+.+..+++..+ +|+ +.....++++
T Consensus 17 ~n~~d~~~fr~lVvWLEDqKI--R~Y~iedR~~L-----R~i~-s~~W~~~~~kYl~dl~-cP~------~~~~~~~~ld 81 (249)
T PF10036_consen 17 FNIDDEEEFRSLVVWLEDQKI--RHYKIEDREKL-----RNID-SSDWPKAFEKYLKDLG-CPF------SSESRQEQLD 81 (249)
T ss_pred CCCCCHHHHHHHHHHHhhhhh--ccCCHhhHHHH-----hcCC-cchHHHHHHHHHHhcC-CCC------cchhHHHHHH
Confidence 566788899999999988320 11111111000 0000 1225667788888888 556 4556688999
Q ss_pred HHHHHHHH
Q psy10891 106 FLLDVLMR 113 (142)
Q Consensus 106 ~l~~~~~~ 113 (142)
||..+++.
T Consensus 82 WLL~~AV~ 89 (249)
T PF10036_consen 82 WLLGLAVR 89 (249)
T ss_pred HHHHHHHH
Confidence 99998886
No 462
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=37.09 E-value=1.1e+02 Score=19.34 Aligned_cols=36 Identities=11% Similarity=0.066 Sum_probs=24.2
Q ss_pred HHHHHHHcCCc----eEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 77 IECFYKEHNFI----GWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 77 ~~~~~~~~~~~----~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
........|+. .+..+|+-++..+-+.+..+...+.
T Consensus 82 ~k~~L~~~Gi~~eRv~~~~~~~~~~~~fa~~~~~f~~~i~ 121 (124)
T PF02662_consen 82 LKKLLEELGIEPERVRLYWISAPEGKRFAEIVNEFTERIK 121 (124)
T ss_pred HHHHHHHcCCChhHeEEEEeCcccHHHHHHHHHHHHHHHH
Confidence 34445556653 3777888888888777777776653
No 463
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=36.90 E-value=2.4e+02 Score=23.16 Aligned_cols=58 Identities=7% Similarity=0.039 Sum_probs=35.7
Q ss_pred CCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEee--ccCCCCHHHHHHHHHHHH
Q psy10891 53 GSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETS--TKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 53 ~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S--a~~~~~i~~l~~~l~~~~ 111 (142)
.-++|+|+.+|+..... ....+.+..+|...+..++..+. ++=|.|-.+|-+.++..+
T Consensus 391 ~fg~pvVVaiN~F~~Dt-~~Ei~~~~~~~~~~~~~~~~~~~~wa~GGeGa~eLA~~Vv~a~ 450 (578)
T PRK13506 391 QYGLPVVVAINRFPTDT-DEELEWLKEAVLLTGAFGCEISEAFAQGGEGATALAQAVVRAC 450 (578)
T ss_pred HcCCCeEEEecCCCCCC-HHHHHHHHHHHHHcCCCcEEEechhhccchhHHHHHHHHHHHh
Confidence 35899999999986422 22345566778773334444433 344456677777777555
No 464
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=36.09 E-value=1.5e+02 Score=20.81 Aligned_cols=61 Identities=13% Similarity=0.038 Sum_probs=31.7
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEE-EEEeCCCCCCCCCCHHHHHHHHHHcC
Q psy10891 18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCM-LLANKCDLPHRQVDINDIECFYKEHN 85 (142)
Q Consensus 18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~D~~~~~~~~~~~~~~~~~~~ 85 (142)
-||.+|+++..+ +.++..+..++..+.... ...+.++. ++.|+... ....+....+++.++
T Consensus 141 aaD~vlip~~p~-~~sl~~~~~l~~~i~~~~---~~~~~~l~gVv~n~~~~---~~~~~~~~~l~~~~g 202 (270)
T cd02040 141 KAQEIYIVTSGE-MMALYAANNICKGILKYA---KSGGVRLGGLICNSRNT---DREDELIDAFAKRLG 202 (270)
T ss_pred cccEEEEEecCc-hHHHHHHHHHHHHHHHhC---ccCCCceEEEEEecCCC---hhHHHHHHHHHHHcC
Confidence 589999988764 446666665555554322 12345554 44565321 112333444555554
No 465
>PTZ00222 60S ribosomal protein L7a; Provisional
Probab=34.96 E-value=38 Score=24.51 Aligned_cols=42 Identities=17% Similarity=0.286 Sum_probs=27.5
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC
Q psy10891 17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP 68 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 68 (142)
..+.+||+.-|++.. + ...|+..+.+. .++|+++|.+|.+|.
T Consensus 147 kKAkLVIIA~DVsPi-e---~vk~LpaLCrk------~~VPY~iVktKaeLG 188 (263)
T PTZ00222 147 KQARMVVIANNVDPV-E---LVLWMPNLCRA------NKIPYAIVKDMARLG 188 (263)
T ss_pred CCceEEEEeCCCCHH-H---HHHHHHHHHHh------cCCCEEEECCHHHHH
Confidence 467788888877532 2 22355555432 389999999887763
No 466
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=34.61 E-value=1.3e+02 Score=19.37 Aligned_cols=81 Identities=14% Similarity=0.061 Sum_probs=45.2
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCC
Q psy10891 18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEG 97 (142)
Q Consensus 18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 97 (142)
++|++.+ +.....+...+..++..+.. ...+++++++.| ..=. ..-+.+.....++.+|+..+|. .+
T Consensus 54 ~~d~V~l--S~~~~~~~~~~~~~~~~L~~----~~~~~~~i~vGG-~~~~--~~~~~~~~~~~l~~~G~~~vf~----~~ 120 (137)
T PRK02261 54 DADAILV--SSLYGHGEIDCRGLREKCIE----AGLGDILLYVGG-NLVV--GKHDFEEVEKKFKEMGFDRVFP----PG 120 (137)
T ss_pred CCCEEEE--cCccccCHHHHHHHHHHHHh----cCCCCCeEEEEC-CCCC--CccChHHHHHHHHHcCCCEEEC----cC
Confidence 4555444 44444566677788877742 223456555555 3311 1223445556677788654443 23
Q ss_pred CCHHHHHHHHHHHH
Q psy10891 98 LMVNDSMKFLLDVL 111 (142)
Q Consensus 98 ~~i~~l~~~l~~~~ 111 (142)
..++++...|.+.+
T Consensus 121 ~~~~~i~~~l~~~~ 134 (137)
T PRK02261 121 TDPEEAIDDLKKDL 134 (137)
T ss_pred CCHHHHHHHHHHHh
Confidence 46778887777665
No 467
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=34.27 E-value=2.6e+02 Score=22.93 Aligned_cols=56 Identities=13% Similarity=0.041 Sum_probs=35.6
Q ss_pred CCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEee--ccCCCCHHHHHHHHHHHH
Q psy10891 54 SPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETS--TKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 54 ~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S--a~~~~~i~~l~~~l~~~~ 111 (142)
-++|+|+.+|+..... ....+.+..++...+. ++..+. ++=|.|-.+|-+.++..+
T Consensus 400 fg~pvVVaiN~F~~Dt-~~Ei~~l~~~~~~~g~-~~~v~~~wa~GGeGa~eLA~~Vv~a~ 457 (587)
T PRK13507 400 SGINPVVCINAFYTDT-HAEIAIVRRLAEQAGA-RVAVSRHWEKGGEGALELADAVIDAC 457 (587)
T ss_pred cCCCeEEEeCCCCCCC-HHHHHHHHHHHHHcCC-CEEEechhhccchhHHHHHHHHHHHh
Confidence 5899999999986422 2234556677888774 344333 334456677777776555
No 468
>KOG2655|consensus
Probab=34.04 E-value=2.1e+02 Score=21.94 Aligned_cols=66 Identities=17% Similarity=0.203 Sum_probs=38.7
Q ss_pred cCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC---CCCHHHHHHHHHHcCCceEEEee
Q psy10891 18 DAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR---QVDINDIECFYKEHNFIGWTETS 93 (142)
Q Consensus 18 ~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~S 93 (142)
..|+|++.+..+.- .+..++ ..+..+. ..+.+|-|+.|.|.... ......+.+....+.+ ++|...
T Consensus 129 RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~--------~~vNiIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI-~vf~fp 198 (366)
T KOG2655|consen 129 RVHCCLYFISPTGH-GLKPLDIEFMKKLS--------KKVNLIPVIAKADTLTKDELNQFKKRIRQDIEEHNI-KVFDFP 198 (366)
T ss_pred ceEEEEEEeCCCCC-CCcHhhHHHHHHHh--------ccccccceeeccccCCHHHHHHHHHHHHHHHHHcCc-ceecCC
Confidence 67999999987642 122222 2334442 57899999999998651 1223344445556663 355443
No 469
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=32.89 E-value=1.3e+02 Score=19.05 Aligned_cols=45 Identities=11% Similarity=0.194 Sum_probs=24.7
Q ss_pred hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeC
Q psy10891 14 VYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANK 64 (142)
Q Consensus 14 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 64 (142)
...+.+|++|++ ...-.|++.+-..+... +......+|++++...
T Consensus 49 ~m~~~sda~I~l--PGG~GTl~El~~~~~~~----~l~~~~~~Piil~~~~ 93 (133)
T PF03641_consen 49 IMIESSDAFIAL--PGGIGTLDELFEALTLM----QLGRHNKVPIILLNID 93 (133)
T ss_dssp HHHHHESEEEEE--S-SHHHHHHHHHHHHHH----HTTSSTS-EEEEEECG
T ss_pred HHHHhCCEEEEE--ecCCchHHHHHHHHHHH----hhccccCCCEEEeCCc
Confidence 345678988886 35555666654443333 2223345688877643
No 470
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=32.05 E-value=48 Score=19.29 Aligned_cols=14 Identities=14% Similarity=0.202 Sum_probs=9.8
Q ss_pred CCCCEEEEEeCCCC
Q psy10891 54 SPIPCMLLANKCDL 67 (142)
Q Consensus 54 ~~~p~ilv~nK~D~ 67 (142)
.++|++.+.+|.++
T Consensus 52 ~~Vp~~~~~s~~eL 65 (82)
T PRK13602 52 KGVPVSKVDSMKKL 65 (82)
T ss_pred cCCCEEEECCHHHH
Confidence 36888877776654
No 471
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=31.27 E-value=3e+02 Score=22.75 Aligned_cols=93 Identities=12% Similarity=0.101 Sum_probs=50.4
Q ss_pred cCCEEEEEEeCCCh-------------hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHH-H
Q psy10891 18 DAHGCIIMFDLTNQ-------------NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYK-E 83 (142)
Q Consensus 18 ~ad~ii~v~d~~~~-------------~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~-~ 83 (142)
..|++++|..+.-. +..+.++.=+..+.+|++.-..-++|+|+.+|+..... ....+.+..+|. .
T Consensus 387 ~P~a~VlVaTvRALK~hGG~~~~~l~~enl~al~~G~~NL~~Hien~~~fgvpvVVAIN~F~tDT-~~Ei~~i~~~~~~~ 465 (625)
T PTZ00386 387 KPDAAVLVATVRALKFHGGVEPVVAGKENLEAVRKGLSNLQRHIQNIRKFGVPVVVALNKFSTDT-DAELELVKELALQE 465 (625)
T ss_pred CcCEEEEEeehHHHHHhCCCCccccCccCHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCC-HHHHHHHHHHHHHh
Confidence 47888888876411 22222222222222222222335899999999985422 223445666777 7
Q ss_pred cCCceEEEee--ccCCCCHHHHHHHHHHHH
Q psy10891 84 HNFIGWTETS--TKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 84 ~~~~~~~~~S--a~~~~~i~~l~~~l~~~~ 111 (142)
.+..++..+. ++=|.|-.+|-..++..+
T Consensus 466 ~ga~~~~~s~~~a~GG~Ga~eLA~~Vv~a~ 495 (625)
T PTZ00386 466 GGAADVVVTDHWAKGGAGAVDLAQALIRVT 495 (625)
T ss_pred cCCccEEEechhhccchhHHHHHHHHHHHH
Confidence 6733344333 344456677777776555
No 472
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=31.20 E-value=1.2e+02 Score=19.47 Aligned_cols=42 Identities=17% Similarity=0.381 Sum_probs=27.6
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEE
Q psy10891 17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~il 60 (142)
..-|+.||.+-++...+-..+..|+..+..-+ .....+|++.
T Consensus 82 eq~dGti~Amc~tg~~~~~sL~~WI~~Lq~~N--P~L~~ipV~F 123 (126)
T PF14784_consen 82 EQEDGTIFAMCMTGTSDKDSLLSWIRGLQETN--PNLAQIPVLF 123 (126)
T ss_pred EeccceEEEEEeccCCCHHHHHHHHHHHHhhC--CchhcceEEE
Confidence 35578888877777667777889999986311 1224566654
No 473
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=30.52 E-value=56 Score=17.26 Aligned_cols=16 Identities=13% Similarity=0.150 Sum_probs=12.0
Q ss_pred hhccCCEEEEEEeCCC
Q psy10891 15 YYKDAHGCIIMFDLTN 30 (142)
Q Consensus 15 ~~~~ad~ii~v~d~~~ 30 (142)
.+-+++++++||+.++
T Consensus 29 ~LC~~~v~~iv~~~~g 44 (51)
T PF00319_consen 29 TLCGVDVALIVFSPDG 44 (51)
T ss_dssp HHHT-EEEEEEEETTS
T ss_pred eecCCeEEEEEECCCC
Confidence 3568999999998765
No 474
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=30.51 E-value=77 Score=26.29 Aligned_cols=31 Identities=16% Similarity=0.025 Sum_probs=26.4
Q ss_pred CCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 85 NFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 85 ~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
.+.|++..||.++.|+..|++.|+..+....
T Consensus 252 ~~~PV~~gSa~~~~Gv~~LLd~I~~~lPsP~ 282 (689)
T TIGR00484 252 EFFPVLCGSAFKNKGVQLLLDAVVDYLPSPT 282 (689)
T ss_pred CEEEEEeccccCCccHHHHHHHHHHHCCCch
Confidence 3467888899999999999999999997653
No 475
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=28.87 E-value=89 Score=20.28 Aligned_cols=43 Identities=19% Similarity=0.276 Sum_probs=26.3
Q ss_pred hHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEe
Q psy10891 12 TRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63 (142)
Q Consensus 12 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n 63 (142)
++..+.++|++|+.| .+..+.|-..+.. .+...-+.|+|++-.
T Consensus 66 T~~li~~aDvVVvrF-------GekYKQWNaAfDA--g~a~AlgKplI~lh~ 108 (141)
T PF11071_consen 66 TRTLIEKADVVVVRF-------GEKYKQWNAAFDA--GYAAALGKPLITLHP 108 (141)
T ss_pred HHHHHhhCCEEEEEe-------chHHHHHHHHhhH--HHHHHcCCCeEEecc
Confidence 466788999999998 2444567555431 011124788877553
No 476
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=28.75 E-value=63 Score=18.90 Aligned_cols=15 Identities=13% Similarity=0.186 Sum_probs=10.8
Q ss_pred CCCCEEEEEeCCCCC
Q psy10891 54 SPIPCMLLANKCDLP 68 (142)
Q Consensus 54 ~~~p~ilv~nK~D~~ 68 (142)
.++|++.+++|.+|.
T Consensus 49 ~~Vpv~~~~t~~eLG 63 (82)
T PRK13601 49 KSIKIVYIDTMKELG 63 (82)
T ss_pred CCCCEEEeCCHHHHH
Confidence 478888877776653
No 477
>KOG3349|consensus
Probab=28.24 E-value=1e+02 Score=20.69 Aligned_cols=12 Identities=17% Similarity=0.304 Sum_probs=9.8
Q ss_pred CCCCEEEEEeCC
Q psy10891 54 SPIPCMLLANKC 65 (142)
Q Consensus 54 ~~~p~ilv~nK~ 65 (142)
.+.|.|+|.|-.
T Consensus 99 l~KPlivVvNd~ 110 (170)
T KOG3349|consen 99 LGKPLIVVVNDS 110 (170)
T ss_pred cCCCEEEEeChH
Confidence 478999999863
No 478
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=27.47 E-value=1.5e+02 Score=20.68 Aligned_cols=19 Identities=11% Similarity=-0.087 Sum_probs=14.5
Q ss_pred hhccCCEEEEEEeCCChhh
Q psy10891 15 YYKDAHGCIIMFDLTNQNS 33 (142)
Q Consensus 15 ~~~~ad~ii~v~d~~~~~s 33 (142)
.+.++|++|+.=|+++...
T Consensus 38 ~~~~~D~viiaGDl~~~~~ 56 (232)
T cd07393 38 VVAPEDIVLIPGDISWAMK 56 (232)
T ss_pred cCCCCCEEEEcCCCccCCC
Confidence 3448999999999986533
No 479
>PF10881 DUF2726: Protein of unknown function (DUF2726); InterPro: IPR024402 This domain found in bacterial proteins has no known function.
Probab=26.98 E-value=1.6e+02 Score=18.24 Aligned_cols=36 Identities=17% Similarity=0.087 Sum_probs=27.8
Q ss_pred HHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891 74 INDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDV 110 (142)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 110 (142)
......+++..| +|++.++.....+...+...|...
T Consensus 90 D~~k~~~l~~ag-iplir~~~~~~~~~~~l~~~l~~~ 125 (126)
T PF10881_consen 90 DEFKDRVLKKAG-IPLIRISPKDSYSVEELRRDLREA 125 (126)
T ss_pred HHHHHHHHHHCC-CCEEEEeCCCCCCHHHHHHHHHHh
Confidence 344556778888 679999999999998888777543
No 480
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=26.82 E-value=2.2e+02 Score=19.61 Aligned_cols=41 Identities=10% Similarity=-0.036 Sum_probs=22.5
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCC-CEEEEEeCCCC
Q psy10891 19 AHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPI-PCMLLANKCDL 67 (142)
Q Consensus 19 ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-p~ilv~nK~D~ 67 (142)
+|.+++|...+ ..+.......+..+... +. ..-+|.|+...
T Consensus 141 ~~~vllV~~p~-~~s~~~~~~~l~~l~~~-------~~~~~glVlN~~~~ 182 (217)
T cd02035 141 RTSFRLVTLPE-KLPLYETERAITELALY-------GIPVDAVVVNRVLP 182 (217)
T ss_pred ceEEEEEeCCC-ccHHHHHHHHHHHHHHC-------CCCCCEEEEeCCcC
Confidence 46777777665 33555555555555321 22 23567777654
No 481
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=26.81 E-value=2.1e+02 Score=19.45 Aligned_cols=42 Identities=14% Similarity=0.201 Sum_probs=17.9
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEE-eCCCC
Q psy10891 16 YKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLA-NKCDL 67 (142)
Q Consensus 16 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~-nK~D~ 67 (142)
+..+|-|+++....+.... ......+.. .++|+++|. ++.|.
T Consensus 79 lt~~DRVllfs~~~~~~e~---~~~a~~L~~-------~gi~~v~Vs~~~~~~ 121 (172)
T PF10740_consen 79 LTETDRVLLFSPFSTDEEA---VALAKQLIE-------QGIPFVGVSPNKPDE 121 (172)
T ss_dssp --TT-EEEEEES-S--HHH---HHHHHHHHH-------HT--EEEEE-SS---
T ss_pred ccccceEEEEeCCCCCHHH---HHHHHHHHH-------CCCCEEEEEecCCCC
Confidence 6678988887765543222 222233321 379999998 65553
No 482
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=26.55 E-value=1.1e+02 Score=20.30 Aligned_cols=67 Identities=7% Similarity=-0.027 Sum_probs=33.5
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCH-HHHHHHHHHcCC
Q psy10891 15 YYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDI-NDIECFYKEHNF 86 (142)
Q Consensus 15 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~-~~~~~~~~~~~~ 86 (142)
-+..||++|++.-.-+..---.+++|+..+. ...-.++|+.++.+--.... .... ..++.++..++.
T Consensus 62 ~i~~AD~iI~~sP~Y~~sip~~LK~~iD~~~----~~~l~~K~v~~~~~gg~~~~-~~~~~~~l~~~l~~l~~ 129 (171)
T TIGR03567 62 QVAQADGVVVATPVYKASYSGVLKALLDLLP----QRALRGKVVLPIATGGSIAH-LLAIDYALKPVLSALGA 129 (171)
T ss_pred HHHHCCEEEEECCcccCCCCHHHHHHHHhCC----hhhhCCCEEEEEEcCCchhH-HHHHHHHHHHHHHHcCC
Confidence 3457999999876654322223344544431 11224678877776532211 0111 234556666664
No 483
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=26.13 E-value=48 Score=19.51 Aligned_cols=23 Identities=4% Similarity=0.042 Sum_probs=15.2
Q ss_pred hhhhhhHhhhccCCEEEEEEeCC
Q psy10891 7 RFTWMTRVYYKDAHGCIIMFDLT 29 (142)
Q Consensus 7 ~~~~~~~~~~~~ad~ii~v~d~~ 29 (142)
.+.......+.+++.+|++++..
T Consensus 38 ~~~~~i~~~i~~s~~~i~~~S~~ 60 (102)
T PF13676_consen 38 DWREEIERAIERSDCVIVLLSPN 60 (102)
T ss_dssp -HHCCCHHCCTTEEEEEEEEEHH
T ss_pred CHHHHHHHHHHhCCEEEEEECcc
Confidence 33444555668899999999643
No 484
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=25.94 E-value=2.2e+02 Score=19.44 Aligned_cols=49 Identities=8% Similarity=-0.057 Sum_probs=30.4
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCC-----CCCCCEEEEEe
Q psy10891 15 YYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSD-----GSPIPCMLLAN 63 (142)
Q Consensus 15 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-----~~~~p~ilv~n 63 (142)
-+..||.+||.+-+-.-..--.++.|+..+....-... ..+..++++.+
T Consensus 58 ~l~~aD~iV~~fPl~w~~~Pa~LK~wiD~V~~~g~ay~~~g~~l~gK~~~~~~T 111 (184)
T PRK04930 58 LLREHDVIVFQHPLYTYSCPALLKEWLDRVLSRGFASGPGGNALAGKYWRSVIT 111 (184)
T ss_pred HHHhCCEEEEEcCccccCCcHHHHHHHHHHHhcCcccCCCCCccCCCEEEEEEE
Confidence 46789999999987654333456688888874321111 24566666655
No 485
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=25.50 E-value=3.1e+02 Score=21.77 Aligned_cols=17 Identities=6% Similarity=0.141 Sum_probs=13.4
Q ss_pred ccCCEEEEEEeCCChhh
Q psy10891 17 KDAHGCIIMFDLTNQNS 33 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s 33 (142)
-+.|=++||+|+.-...
T Consensus 211 ~~P~E~llVvDam~GQd 227 (451)
T COG0541 211 INPDETLLVVDAMIGQD 227 (451)
T ss_pred cCCCeEEEEEecccchH
Confidence 47899999999986543
No 486
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=25.48 E-value=2.8e+02 Score=20.40 Aligned_cols=42 Identities=5% Similarity=-0.043 Sum_probs=28.0
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVD 45 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~ 45 (142)
|||+.- .......+..+|.+++|.+.+ ..+......++..+.
T Consensus 211 D~p~~~--~~~~~~~L~~AD~vliV~~~~-~~sl~~a~r~l~~l~ 252 (322)
T TIGR03815 211 DLPRRL--TPAAETALESADLVLVVVPAD-VRAVAAAARVCPELG 252 (322)
T ss_pred eCCCCC--CHHHHHHHHHCCEEEEEcCCc-HHHHHHHHHHHHHHh
Confidence 566543 233456678999999999764 456676667766664
No 487
>PRK06242 flavodoxin; Provisional
Probab=25.23 E-value=1.3e+02 Score=19.09 Aligned_cols=65 Identities=14% Similarity=0.004 Sum_probs=36.6
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCc
Q psy10891 15 YYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFI 87 (142)
Q Consensus 15 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~ 87 (142)
.+.++|++++..-+-...-...+..|+..+.. ..+.++++++|-- ... .-....+...+...|+.
T Consensus 40 ~~~~~d~ii~g~pvy~~~~~~~~~~fl~~~~~------~~~k~~~~f~t~g-~~~-~~~~~~l~~~l~~~g~~ 104 (150)
T PRK06242 40 DLSEYDLIGFGSGIYFGKFHKSLLKLIEKLPP------VSGKKAFIFSTSG-LPF-LKYHKALKKKLKEKGFE 104 (150)
T ss_pred cHhHCCEEEEeCchhcCCcCHHHHHHHHhhhh------hcCCeEEEEECCC-CCc-chHHHHHHHHHHHCCCE
Confidence 35678999988755433223344455555421 1467888888753 221 11245666677777754
No 488
>PRK13660 hypothetical protein; Provisional
Probab=25.19 E-value=2.3e+02 Score=19.37 Aligned_cols=19 Identities=16% Similarity=0.539 Sum_probs=12.0
Q ss_pred HhhhccCCEEEEEEeCCCh
Q psy10891 13 RVYYKDAHGCIIMFDLTNQ 31 (142)
Q Consensus 13 ~~~~~~ad~ii~v~d~~~~ 31 (142)
...+.++|++|++||-..+
T Consensus 124 ~fmv~~sd~~i~~YD~e~~ 142 (182)
T PRK13660 124 QFMLEHTDGALLVYDEENE 142 (182)
T ss_pred HHHHHccCeEEEEEcCCCC
Confidence 3345677777777776543
No 489
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=25.19 E-value=46 Score=26.34 Aligned_cols=33 Identities=15% Similarity=-0.038 Sum_probs=27.8
Q ss_pred ceEEEeeccCCCCHHHHHHHHHHHHHHHhCCCC
Q psy10891 87 IGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQN 119 (142)
Q Consensus 87 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~~~ 119 (142)
.|+|+=||..+.||+.+++.++..+......+.
T Consensus 251 TPVFFGSAl~NFGV~~~L~~~~~~AP~P~~~~a 283 (528)
T COG4108 251 TPVFFGSALGNFGVDHFLDALVDWAPSPRARQA 283 (528)
T ss_pred cceEehhhhhccCHHHHHHHHHhhCCCCCcccC
Confidence 578899999999999999999998877655443
No 490
>PF07764 Omega_Repress: Omega Transcriptional Repressor; InterPro: IPR011686 The omega transcriptional repressor regulates expression of genes involved in copy number control and stable maintenance of plasmids. The omega protein belongs to the structural superfamily of MetJ/Arc repressors featuring a ribbon-helix-helix DNA-binding motif with the beta-ribbon located in and recognising the major groove of operator DNA [].; PDB: 2BNW_D 1IRQ_A 2CAX_B 2BNZ_A.
Probab=24.87 E-value=79 Score=17.48 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=16.5
Q ss_pred eccCCCCHHHHHHHHHHHHHHH
Q psy10891 93 STKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 93 Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
||++|.++.++.+..++..++.
T Consensus 44 tAknGgNvKEvme~~lr~~l~~ 65 (71)
T PF07764_consen 44 TAKNGGNVKEVMEQALREKLKS 65 (71)
T ss_dssp HHHSSS-HHHHHHHHHHHHHHH
T ss_pred ecccCCCHHHHHHHHHHHHHHH
Confidence 8999999999988777665543
No 491
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=24.76 E-value=2.8e+02 Score=20.14 Aligned_cols=60 Identities=7% Similarity=0.144 Sum_probs=37.2
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHH
Q psy10891 17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYK 82 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~ 82 (142)
.++|+++++--..-+.+-+.+..++..+.... ++.|+++ -|--......++.+.+..+++
T Consensus 95 ~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~-----~~lpi~i-Yn~P~~tg~~l~~~~~~~L~~ 154 (288)
T cd00954 95 LGYDAISAITPFYYKFSFEEIKDYYREIIAAA-----ASLPMII-YHIPALTGVNLTLEQFLELFE 154 (288)
T ss_pred cCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhc-----CCCCEEE-EeCccccCCCCCHHHHHHHhc
Confidence 47899887765555555566667777774221 2678766 555443334567777777774
No 492
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=24.27 E-value=2.1e+02 Score=18.92 Aligned_cols=42 Identities=2% Similarity=-0.009 Sum_probs=25.1
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCC
Q psy10891 17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCD 66 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 66 (142)
...|.+|+-+ |.+-.....++..+.. .-+.+.+++|||-|.-
T Consensus 68 ~~~D~vvly~----PKaK~e~~~lL~~l~~----~L~~g~~i~vVGEnk~ 109 (155)
T PF08468_consen 68 QDFDTVVLYW----PKAKAEAQYLLANLLS----HLPPGTEIFVVGENKG 109 (155)
T ss_dssp TT-SEEEEE------SSHHHHHHHHHHHHT----TS-TT-EEEEEEEGGG
T ss_pred cCCCEEEEEc----cCcHHHHHHHHHHHHH----hCCCCCEEEEEecCcc
Confidence 4688888877 4455566666666643 2346888999997754
No 493
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=24.14 E-value=1e+02 Score=21.06 Aligned_cols=47 Identities=11% Similarity=-0.082 Sum_probs=25.8
Q ss_pred hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeC
Q psy10891 14 VYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANK 64 (142)
Q Consensus 14 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 64 (142)
.-+..||++|++.-.-...---.+++|+..+. ...-.++|++++++-
T Consensus 62 ~~i~~AD~iIi~tP~Y~~s~pg~LKn~iD~l~----~~~l~~K~v~iiat~ 108 (191)
T PRK10569 62 EQLAQADGLIVATPVYKASFSGALKTLLDLLP----ERALEHKVVLPLATG 108 (191)
T ss_pred HHHHHCCEEEEECCccCCCCCHHHHHHHHhCC----hhhhCCCEEEEEEec
Confidence 34568999999876654311112233333221 111247788888885
No 494
>PTZ00365 60S ribosomal protein L7Ae-like; Provisional
Probab=23.99 E-value=65 Score=23.41 Aligned_cols=42 Identities=19% Similarity=0.248 Sum_probs=27.6
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC
Q psy10891 17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP 68 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 68 (142)
..+.+||+.-|++.. ....|+..+.+. .++|++++.+|.+|.
T Consensus 147 kKAkLVIIA~DVsP~----t~kk~LP~LC~k------~~VPY~iv~sK~eLG 188 (266)
T PTZ00365 147 KKAKLVVIAHDVDPI----ELVCFLPALCRK------KEVPYCIIKGKSRLG 188 (266)
T ss_pred CCccEEEEeCCCCHH----HHHHHHHHHHhc------cCCCEEEECCHHHHH
Confidence 467888888887532 223455555422 489999999987763
No 495
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=23.61 E-value=2.6e+02 Score=22.80 Aligned_cols=107 Identities=11% Similarity=0.117 Sum_probs=49.3
Q ss_pred cchhhhhh-hHhhhccCCEEEEEEeCCC-------------hhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 4 GQERFTWM-TRVYYKDAHGCIIMFDLTN-------------QNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 4 G~e~~~~~-~~~~~~~ad~ii~v~d~~~-------------~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
|-|+|-.+ -+..--..|++++|..+.- .+..+.++.=+.-+.+|++.-..-++|+|+.+|+.-...
T Consensus 306 GaEKF~dIkcr~~gl~P~~~VlVaTvRALK~HGG~~~~~l~~eNl~al~~G~~NL~rHIeNik~fGvpvVVAIN~F~tDT 385 (557)
T PF01268_consen 306 GAEKFFDIKCRKSGLKPDAVVLVATVRALKMHGGVAKDDLNEENLEALEKGFANLERHIENIKKFGVPVVVAINRFPTDT 385 (557)
T ss_dssp HHHHHHHTHHHHHT---SEEEEEEEHHHHHHHTT--GGGTTS--HHHHHHHHHHHHHHHHHHHCTT--EEEEEE--TTS-
T ss_pred ChhhhcCccchhcccCcceEEEeeechHHHhhcCCCccccCccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCC
Confidence 34555443 1222235789999887631 112222222222223332222346899999999985421
Q ss_pred CCCCHHHHHHHHHHcCCceEEEee--ccCCCCHHHHHHHHHHHHH
Q psy10891 70 RQVDINDIECFYKEHNFIGWTETS--TKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~S--a~~~~~i~~l~~~l~~~~~ 112 (142)
....+.+..+|++.| .++..+. ++=|.|-.+|-+.+++.+.
T Consensus 386 -~aEi~~I~~~~~~~G-v~~avs~~wa~GGeGa~eLA~~Vv~a~e 428 (557)
T PF01268_consen 386 -DAEIELIRELCEELG-VRAAVSEHWAKGGEGAVELAEAVVEACE 428 (557)
T ss_dssp -HHHHHHHHHHCCCCC-EEEEEC-HHHHGGGGCHHHHHHHHHH-H
T ss_pred -HHHHHHHHHHHHhCC-CCEEEechhhcccccHHHHHHHHHHHhh
Confidence 112334445566666 3343332 3445677888888888774
No 496
>KOG2052|consensus
Probab=23.45 E-value=1.1e+02 Score=24.40 Aligned_cols=43 Identities=16% Similarity=0.208 Sum_probs=34.4
Q ss_pred CcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHH
Q psy10891 3 EGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVD 45 (142)
Q Consensus 3 ~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~ 45 (142)
-|.=||...|+--+++-++++=+|..+++.|+-.-.++++-++
T Consensus 219 IGkGRyGEVwrG~wrGe~VAVKiF~srdE~SWfrEtEIYqTvm 261 (513)
T KOG2052|consen 219 IGKGRFGEVWRGRWRGEDVAVKIFSSRDERSWFRETEIYQTVM 261 (513)
T ss_pred ecCccccceeeccccCCceEEEEecccchhhhhhHHHHHHHHH
Confidence 3677899999999999999999999999988765555554443
No 497
>PHA03050 glutaredoxin; Provisional
Probab=23.38 E-value=1.6e+02 Score=17.99 Aligned_cols=17 Identities=6% Similarity=-0.316 Sum_probs=7.4
Q ss_pred eEEEeeccCCCCHHHHH
Q psy10891 88 GWTETSTKEGLMVNDSM 104 (142)
Q Consensus 88 ~~~~~Sa~~~~~i~~l~ 104 (142)
|.+++..+.=.|.+++.
T Consensus 71 P~IfI~g~~iGG~ddl~ 87 (108)
T PHA03050 71 PRIFFGKTSIGGYSDLL 87 (108)
T ss_pred CEEEECCEEEeChHHHH
Confidence 44444444333444443
No 498
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=23.06 E-value=1.7e+02 Score=20.33 Aligned_cols=35 Identities=14% Similarity=0.223 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHH
Q psy10891 73 DINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108 (142)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 108 (142)
...+.-.|+++.+ .|++.+|+=..-=|..||+.++
T Consensus 77 ~fKef~e~ike~d-i~fiVvSsGm~~fI~~lfe~iv 111 (220)
T COG4359 77 GFKEFVEWIKEHD-IPFIVVSSGMDPFIYPLFEGIV 111 (220)
T ss_pred cHHHHHHHHHHcC-CCEEEEeCCCchHHHHHHHhhc
Confidence 3456667899988 5699999877766777776665
No 499
>PRK06756 flavodoxin; Provisional
Probab=23.05 E-value=1.9e+02 Score=18.34 Aligned_cols=45 Identities=11% Similarity=0.108 Sum_probs=24.2
Q ss_pred hhccCCEEEEEEeCCChhhH-HHHHHHHHHHHHhcccCCCCCCCEEEEEe
Q psy10891 15 YYKDAHGCIIMFDLTNQNSF-KNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63 (142)
Q Consensus 15 ~~~~ad~ii~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~p~ilv~n 63 (142)
.+.+.|+++|..-......+ ..+..|+..+. .....+.++.++++
T Consensus 46 ~~~~~d~vi~gspt~~~g~~p~~~~~fl~~l~----~~~l~~k~~~~fgt 91 (148)
T PRK06756 46 ILEQYDGIILGAYTWGDGDLPDDFLDFYDAMD----SIDLTGKKAAVFGS 91 (148)
T ss_pred HHhcCCeEEEEeCCCCCCCCcHHHHHHHHHHh----cCCCCCCEEEEEeC
Confidence 34577888887744321111 22445555542 11235678888877
No 500
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=22.61 E-value=1.7e+02 Score=16.92 Aligned_cols=12 Identities=17% Similarity=0.506 Sum_probs=6.7
Q ss_pred CCCCEEEEEeCC
Q psy10891 54 SPIPCMLLANKC 65 (142)
Q Consensus 54 ~~~p~ilv~nK~ 65 (142)
+..|+|++.+..
T Consensus 70 ~~~~ii~~t~~~ 81 (112)
T PF00072_consen 70 PSIPIIVVTDED 81 (112)
T ss_dssp TTSEEEEEESST
T ss_pred ccccEEEecCCC
Confidence 456666665443
Done!