Query psy10891
Match_columns 142
No_of_seqs 117 out of 1248
Neff 9.8
Searched_HMMs 29240
Date Fri Aug 16 21:06:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10891.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10891hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 5.9E-28 2E-32 166.8 11.0 111 1-116 68-179 (216)
2 2hup_A RAS-related protein RAB 99.9 8.3E-23 2.8E-27 139.1 13.3 112 1-116 84-196 (201)
3 3q72_A GTP-binding protein RAD 99.9 1.9E-22 6.3E-27 132.7 13.0 110 1-114 55-165 (166)
4 3tkl_A RAS-related protein RAB 99.9 1.5E-22 5.2E-27 136.5 12.8 112 1-117 71-183 (196)
5 3kkq_A RAS-related protein M-R 99.9 3.6E-22 1.2E-26 133.4 13.3 109 1-113 72-182 (183)
6 4dsu_A GTPase KRAS, isoform 2B 99.9 4.4E-22 1.5E-26 133.2 13.6 112 1-116 58-169 (189)
7 2q3h_A RAS homolog gene family 99.9 2.7E-22 9.2E-27 136.0 12.4 111 1-116 74-198 (201)
8 3cbq_A GTP-binding protein REM 99.9 5.3E-22 1.8E-26 134.6 13.7 111 1-115 78-190 (195)
9 2bcg_Y Protein YP2, GTP-bindin 99.9 2.3E-22 7.9E-27 136.9 11.9 111 1-116 63-174 (206)
10 3q3j_B RHO-related GTP-binding 99.9 8.4E-23 2.9E-27 140.4 9.7 110 1-115 81-205 (214)
11 2fu5_C RAS-related protein RAB 99.9 2E-22 6.8E-27 134.7 11.2 111 1-116 63-174 (183)
12 2fn4_A P23, RAS-related protei 99.9 4.4E-22 1.5E-26 132.3 12.7 112 1-116 63-175 (181)
13 2a5j_A RAS-related protein RAB 99.9 4.8E-22 1.6E-26 134.0 12.9 111 1-116 76-187 (191)
14 3reg_A RHO-like small GTPase; 99.9 2.5E-22 8.7E-27 135.6 11.2 110 1-115 77-190 (194)
15 3tw8_B RAS-related protein RAB 99.9 3.1E-22 1.1E-26 133.0 11.4 110 1-116 64-174 (181)
16 2atx_A Small GTP binding prote 99.9 8E-22 2.7E-26 133.0 13.6 107 1-112 72-192 (194)
17 1wms_A RAB-9, RAB9, RAS-relate 99.9 1.3E-21 4.4E-26 129.8 14.3 114 1-114 62-175 (177)
18 2nzj_A GTP-binding protein REM 99.9 1.3E-21 4.5E-26 129.5 14.2 112 1-116 58-172 (175)
19 1ky3_A GTP-binding protein YPT 99.9 1.3E-21 4.4E-26 130.2 14.2 115 1-115 64-180 (182)
20 3q85_A GTP-binding protein REM 99.9 7.7E-22 2.6E-26 130.0 12.9 110 1-114 57-168 (169)
21 2bov_A RAla, RAS-related prote 99.9 6.1E-22 2.1E-26 134.4 12.7 112 1-116 68-180 (206)
22 2ew1_A RAS-related protein RAB 99.9 3.1E-22 1.1E-26 136.5 11.2 111 1-116 81-192 (201)
23 3t5g_A GTP-binding protein RHE 99.9 3.1E-22 1E-26 133.5 10.9 112 1-116 60-172 (181)
24 3dz8_A RAS-related protein RAB 99.9 3.1E-22 1.1E-26 134.9 10.9 110 1-115 78-188 (191)
25 3ihw_A Centg3; RAS, centaurin, 99.9 1.1E-21 3.6E-26 132.0 13.0 107 1-115 73-182 (184)
26 3t1o_A Gliding protein MGLA; G 99.9 3.6E-22 1.2E-26 134.5 10.6 110 1-116 80-195 (198)
27 2efe_B Small GTP-binding prote 99.9 6E-22 2E-26 131.9 11.4 109 1-114 67-176 (181)
28 1x3s_A RAS-related protein RAB 99.9 1.3E-21 4.5E-26 131.7 13.2 111 1-115 70-180 (195)
29 2bme_A RAB4A, RAS-related prot 99.9 6.1E-22 2.1E-26 132.5 11.4 111 1-116 65-176 (186)
30 1z0f_A RAB14, member RAS oncog 99.9 6.4E-22 2.2E-26 131.3 11.4 108 1-113 70-178 (179)
31 1c1y_A RAS-related protein RAP 99.9 1.2E-21 4E-26 128.7 12.3 108 1-111 57-165 (167)
32 2g3y_A GTP-binding protein GEM 99.9 1.6E-21 5.5E-26 134.1 13.3 111 1-115 93-205 (211)
33 2o52_A RAS-related protein RAB 99.9 8E-22 2.7E-26 134.0 11.7 111 1-116 80-191 (200)
34 3oes_A GTPase rhebl1; small GT 99.9 3.4E-22 1.2E-26 135.8 9.7 112 1-116 78-190 (201)
35 3bc1_A RAS-related protein RAB 99.9 1.7E-21 5.7E-26 130.8 13.0 112 1-116 76-188 (195)
36 1g16_A RAS-related protein SEC 99.9 9E-22 3.1E-26 129.6 11.4 109 1-114 58-166 (170)
37 2il1_A RAB12; G-protein, GDP, 99.9 5.4E-22 1.8E-26 134.0 10.4 110 1-114 81-191 (192)
38 1u8z_A RAS-related protein RAL 99.9 1.1E-21 3.6E-26 128.8 11.5 109 1-113 58-167 (168)
39 1zbd_A Rabphilin-3A; G protein 99.9 1.1E-21 3.9E-26 133.1 12.0 110 1-115 63-173 (203)
40 2oil_A CATX-8, RAS-related pro 99.9 1.3E-21 4.6E-26 131.8 12.1 110 1-115 80-190 (193)
41 2j0v_A RAC-like GTP-binding pr 99.9 1.9E-22 6.4E-27 138.0 7.9 111 1-116 63-183 (212)
42 2a9k_A RAS-related protein RAL 99.9 2E-21 7E-26 129.7 12.8 111 1-115 72-183 (187)
43 2hxs_A RAB-26, RAS-related pro 99.9 8.1E-22 2.8E-26 130.9 10.7 111 1-114 62-174 (178)
44 2gf9_A RAS-related protein RAB 99.9 1.2E-21 4.2E-26 131.7 11.6 110 1-115 77-187 (189)
45 1z2a_A RAS-related protein RAB 99.9 1.3E-21 4.3E-26 128.6 11.4 107 1-113 60-167 (168)
46 1m7b_A RND3/RHOE small GTP-bin 99.9 4.2E-22 1.4E-26 133.6 9.0 108 1-113 61-183 (184)
47 2g6b_A RAS-related protein RAB 99.9 1.1E-21 3.7E-26 130.5 10.7 109 1-114 66-175 (180)
48 3clv_A RAB5 protein, putative; 99.9 6.3E-21 2.2E-25 128.7 14.6 108 1-115 99-206 (208)
49 2j1l_A RHO-related GTP-binding 99.9 1.2E-21 3.9E-26 134.6 10.7 110 1-115 88-211 (214)
50 3bwd_D RAC-like GTP-binding pr 99.9 6.4E-22 2.2E-26 131.9 9.2 107 1-112 62-180 (182)
51 1vg8_A RAS-related protein RAB 99.9 3.2E-21 1.1E-25 131.0 12.8 115 1-115 63-177 (207)
52 1r2q_A RAS-related protein RAB 99.9 1.3E-21 4.6E-26 128.6 10.3 106 1-111 61-167 (170)
53 2f7s_A C25KG, RAS-related prot 99.9 1.5E-21 5.1E-26 133.9 10.8 112 1-116 90-202 (217)
54 2gco_A H9, RHO-related GTP-bin 99.9 5.4E-21 1.9E-25 129.9 13.4 107 1-112 79-199 (201)
55 3cph_A RAS-related protein SEC 99.9 4.8E-21 1.7E-25 130.7 13.2 110 1-115 75-184 (213)
56 3cpj_B GTP-binding protein YPT 99.9 8.4E-22 2.9E-26 136.0 9.4 111 1-116 68-179 (223)
57 1z08_A RAS-related protein RAB 99.9 4.7E-22 1.6E-26 131.1 7.8 108 1-113 61-169 (170)
58 1z0j_A RAB-22, RAS-related pro 99.9 2.7E-21 9.3E-26 127.3 11.4 106 1-111 61-167 (170)
59 1z06_A RAS-related protein RAB 99.9 3.6E-21 1.2E-25 129.4 12.0 108 1-112 75-187 (189)
60 1mh1_A RAC1; GTP-binding, GTPa 99.9 3.7E-21 1.3E-25 128.4 11.9 108 1-113 59-180 (186)
61 4djt_A GTP-binding nuclear pro 99.9 3.7E-21 1.3E-25 132.0 12.2 112 1-117 67-179 (218)
62 1gwn_A RHO-related GTP-binding 99.9 1.1E-21 3.8E-26 134.1 9.5 108 1-113 82-204 (205)
63 3con_A GTPase NRAS; structural 99.9 8.1E-21 2.8E-25 127.6 13.5 112 1-116 75-186 (190)
64 1kao_A RAP2A; GTP-binding prot 99.9 2.3E-21 7.9E-26 127.0 10.3 109 1-113 57-166 (167)
65 2fg5_A RAB-22B, RAS-related pr 99.9 1.1E-21 3.8E-26 132.4 8.9 109 1-114 78-187 (192)
66 2atv_A RERG, RAS-like estrogen 99.9 5.4E-21 1.8E-25 129.3 12.2 111 1-116 82-194 (196)
67 2yc2_C IFT27, small RAB-relate 99.9 4.5E-21 1.5E-25 130.2 11.8 111 1-115 79-194 (208)
68 2ce2_X GTPase HRAS; signaling 99.9 9.2E-21 3.2E-25 123.9 12.7 108 1-112 57-164 (166)
69 2p5s_A RAS and EF-hand domain 99.9 1.8E-21 6.2E-26 132.0 9.2 108 1-113 83-197 (199)
70 3c5c_A RAS-like protein 12; GD 99.9 2.8E-21 9.7E-26 130.0 10.0 109 1-112 75-185 (187)
71 4gzl_A RAS-related C3 botulinu 99.9 1.2E-21 4.2E-26 133.5 8.3 106 1-111 84-203 (204)
72 2iwr_A Centaurin gamma 1; ANK 99.9 1.8E-20 6.2E-25 124.6 13.3 109 1-115 60-171 (178)
73 1f6b_A SAR1; gtpases, N-termin 99.9 5E-21 1.7E-25 130.0 10.1 106 1-110 75-196 (198)
74 1ek0_A Protein (GTP-binding pr 99.8 4.6E-21 1.6E-25 126.1 9.5 106 1-111 58-167 (170)
75 2cjw_A GTP-binding protein GEM 99.8 2.6E-20 8.8E-25 126.0 13.4 111 1-115 62-174 (192)
76 2y8e_A RAB-protein 6, GH09086P 99.8 2.7E-21 9.2E-26 128.3 8.3 107 1-112 69-176 (179)
77 2fv8_A H6, RHO-related GTP-bin 99.8 1.2E-20 4.2E-25 128.7 11.7 109 1-114 79-201 (207)
78 2gf0_A GTP-binding protein DI- 99.8 7.3E-21 2.5E-25 128.4 9.8 111 1-114 62-172 (199)
79 4bas_A ADP-ribosylation factor 99.8 1.5E-20 5.3E-25 126.8 11.0 114 1-116 69-192 (199)
80 1m2o_B GTP-binding protein SAR 99.8 1.2E-20 4.2E-25 127.2 10.2 106 1-110 73-189 (190)
81 3gj0_A GTP-binding nuclear pro 99.8 7.9E-21 2.7E-25 130.8 9.1 108 1-115 70-177 (221)
82 1r8s_A ADP-ribosylation factor 99.8 2.4E-20 8.2E-25 122.3 10.5 109 1-114 50-163 (164)
83 2erx_A GTP-binding protein DI- 99.8 2.1E-20 7.3E-25 123.1 9.4 108 1-111 57-165 (172)
84 3l0i_B RAS-related protein RAB 99.8 5E-22 1.7E-26 134.8 0.5 108 1-113 88-196 (199)
85 1fzq_A ADP-ribosylation factor 99.8 5E-20 1.7E-24 123.3 10.1 109 1-114 66-179 (181)
86 1zj6_A ADP-ribosylation factor 99.8 6.6E-20 2.3E-24 123.0 10.5 109 1-114 66-179 (187)
87 1upt_A ARL1, ADP-ribosylation 99.8 6.6E-20 2.3E-24 120.8 9.9 108 1-113 57-169 (171)
88 2h57_A ADP-ribosylation factor 99.8 1.8E-19 6.2E-24 121.1 12.1 109 1-113 73-187 (190)
89 1ksh_A ARF-like protein 2; sma 99.8 9.8E-20 3.4E-24 121.9 10.8 109 1-114 68-181 (186)
90 2wkq_A NPH1-1, RAS-related C3 99.8 9E-20 3.1E-24 132.0 10.6 108 1-113 209-330 (332)
91 3llu_A RAS-related GTP-binding 99.8 4.4E-20 1.5E-24 125.0 7.7 104 1-111 75-195 (196)
92 1moz_A ARL1, ADP-ribosylation 99.8 2.1E-19 7.2E-24 119.8 10.8 110 1-114 68-181 (183)
93 2h17_A ADP-ribosylation factor 99.8 1.2E-19 4.1E-24 121.2 9.4 105 1-110 71-180 (181)
94 1zd9_A ADP-ribosylation factor 99.8 1.2E-19 4E-24 122.1 9.3 109 1-113 73-185 (188)
95 2b6h_A ADP-ribosylation factor 99.8 1.1E-19 3.8E-24 122.7 8.9 107 1-112 79-190 (192)
96 3th5_A RAS-related C3 botulinu 99.7 2.7E-21 9.3E-26 131.5 0.0 107 1-112 84-204 (204)
97 2x77_A ADP-ribosylation factor 99.8 1.4E-19 4.7E-24 121.5 8.3 109 1-114 72-185 (189)
98 2zej_A Dardarin, leucine-rich 99.8 5.2E-20 1.8E-24 123.5 4.4 109 1-114 62-179 (184)
99 1cip_A Protein (guanine nucleo 99.8 1.3E-19 4.4E-24 133.1 5.7 113 1-116 199-347 (353)
100 2f9l_A RAB11B, member RAS onco 99.8 6.7E-18 2.3E-22 114.4 12.6 113 1-118 60-173 (199)
101 3o47_A ADP-ribosylation factor 99.8 7.7E-19 2.6E-23 127.9 7.7 109 1-113 215-327 (329)
102 3r7w_B Gtpase2, GTP-binding pr 99.8 9.9E-20 3.4E-24 131.9 2.3 106 1-113 52-174 (331)
103 2xtz_A Guanine nucleotide-bind 99.8 6.1E-19 2.1E-23 129.5 6.1 113 1-116 189-348 (354)
104 3c5h_A Glucocorticoid receptor 99.8 7.2E-19 2.4E-23 123.9 5.8 105 2-111 125-253 (255)
105 3lvq_E ARF-GAP with SH3 domain 99.7 7.2E-18 2.5E-22 128.6 10.2 111 1-115 372-486 (497)
106 2fh5_B SR-beta, signal recogni 99.7 1.2E-17 4.1E-22 114.1 10.1 108 1-110 60-213 (214)
107 1azs_C GS-alpha; complex (lyas 99.7 2.2E-18 7.6E-23 128.1 6.9 112 1-115 223-387 (402)
108 1zcb_A G alpha I/13; GTP-bindi 99.7 1.4E-18 4.6E-23 128.0 4.0 112 1-116 207-356 (362)
109 3ohm_A Guanine nucleotide-bind 99.7 2.4E-18 8.2E-23 125.0 5.1 112 1-116 173-321 (327)
110 2lkc_A Translation initiation 99.7 2E-17 7E-22 109.5 9.2 106 1-116 61-174 (178)
111 3r7w_A Gtpase1, GTP-binding pr 99.7 1E-17 3.4E-22 121.0 7.8 108 1-111 58-179 (307)
112 2qu8_A Putative nucleolar GTP- 99.7 2.1E-16 7.2E-21 109.2 11.1 109 1-115 82-207 (228)
113 2cxx_A Probable GTP-binding pr 99.7 2.1E-17 7E-22 110.6 5.7 111 1-116 50-187 (190)
114 2wji_A Ferrous iron transport 99.7 4.8E-17 1.6E-21 107.2 7.0 99 1-111 56-163 (165)
115 3pqc_A Probable GTP-binding pr 99.7 7.3E-17 2.5E-21 108.2 7.8 102 1-112 74-193 (195)
116 1u0l_A Probable GTPase ENGC; p 99.7 4.1E-17 1.4E-21 117.5 6.6 95 5-108 71-168 (301)
117 1oix_A RAS-related protein RAB 99.7 2.8E-16 9.5E-21 105.9 9.7 106 1-111 84-190 (191)
118 4fid_A G protein alpha subunit 99.7 1.7E-17 5.7E-22 121.0 3.8 110 1-113 167-328 (340)
119 3dpu_A RAB family protein; roc 99.7 1.1E-16 3.6E-21 123.3 7.9 105 1-114 104-209 (535)
120 3iev_A GTP-binding protein ERA 99.7 2.9E-16 1E-20 113.4 8.8 105 1-112 65-181 (308)
121 1svi_A GTP-binding protein YSX 99.7 1E-15 3.5E-20 102.9 10.1 103 1-111 75-193 (195)
122 2dyk_A GTP-binding protein; GT 99.6 2.2E-16 7.5E-21 102.8 5.9 99 1-111 55-160 (161)
123 4dcu_A GTP-binding protein ENG 99.6 5.2E-15 1.8E-19 112.0 10.2 108 1-116 249-372 (456)
124 2wjg_A FEOB, ferrous iron tran 99.6 5.4E-16 1.9E-20 103.6 4.3 102 1-114 60-170 (188)
125 2gj8_A MNME, tRNA modification 99.6 1.4E-16 4.9E-21 105.7 0.7 100 1-112 58-165 (172)
126 3cb4_D GTP-binding protein LEP 99.6 4.8E-15 1.6E-19 115.2 9.0 105 1-114 77-183 (599)
127 3b1v_A Ferrous iron uptake tra 99.6 1.4E-15 4.9E-20 108.1 5.6 99 1-111 55-162 (272)
128 3sjy_A Translation initiation 99.6 2.7E-15 9.2E-20 111.9 7.3 106 1-112 81-191 (403)
129 3iby_A Ferrous iron transport 99.6 4E-16 1.4E-20 110.0 2.6 99 1-110 54-164 (256)
130 2ywe_A GTP-binding protein LEP 99.6 1.2E-14 4E-19 113.0 10.7 104 1-113 79-184 (600)
131 4dhe_A Probable GTP-binding pr 99.6 4.5E-15 1.6E-19 101.7 7.5 106 1-114 85-212 (223)
132 3a1s_A Iron(II) transport prot 99.6 2.5E-15 8.4E-20 106.1 5.1 100 1-112 58-166 (258)
133 2hjg_A GTP-binding protein ENG 99.6 1.3E-14 4.3E-19 109.3 9.1 107 1-115 229-351 (436)
134 2yv5_A YJEQ protein; hydrolase 99.6 3.9E-15 1.3E-19 107.2 5.9 97 4-108 65-164 (302)
135 1nrj_B SR-beta, signal recogni 99.5 1.5E-15 5.2E-20 103.9 3.0 98 1-99 61-170 (218)
136 1wf3_A GTP-binding protein; GT 99.5 5.6E-15 1.9E-19 106.4 5.3 101 1-111 61-171 (301)
137 3i8s_A Ferrous iron transport 99.5 1.5E-15 5.2E-20 108.0 2.2 100 1-111 56-167 (274)
138 3gee_A MNME, tRNA modification 99.5 2E-14 6.8E-19 109.2 8.4 100 1-112 287-397 (476)
139 2e87_A Hypothetical protein PH 99.5 1.4E-13 4.6E-18 101.2 11.0 107 1-114 220-337 (357)
140 3tr5_A RF-3, peptide chain rel 99.5 1.2E-13 4.3E-18 106.1 11.1 61 1-69 88-148 (528)
141 3l82_B F-box only protein 4; T 99.5 4.4E-14 1.5E-18 96.2 7.2 109 2-112 109-222 (227)
142 1wb1_A Translation elongation 99.5 1.1E-13 3.7E-18 105.4 9.8 101 1-112 79-188 (482)
143 3qq5_A Small GTP-binding prote 99.5 1.2E-14 4.2E-19 108.9 4.3 101 1-113 89-196 (423)
144 1mky_A Probable GTP-binding pr 99.5 7.3E-14 2.5E-18 105.2 8.2 103 1-114 55-167 (439)
145 1xzp_A Probable tRNA modificat 99.5 1.8E-13 6.1E-18 104.1 10.4 100 1-113 297-405 (482)
146 1lnz_A SPO0B-associated GTP-bi 99.5 4.8E-14 1.6E-18 103.1 6.8 108 1-113 212-330 (342)
147 1s0u_A EIF-2-gamma, translatio 99.5 1.3E-13 4.4E-18 103.0 9.3 102 1-112 87-197 (408)
148 3k53_A Ferrous iron transport 99.5 2.6E-14 8.9E-19 101.3 4.5 102 1-113 56-166 (271)
149 1g7s_A Translation initiation 99.5 5.9E-13 2E-17 103.5 11.7 103 1-114 76-219 (594)
150 3izy_P Translation initiation 99.5 1E-14 3.5E-19 112.0 1.7 104 1-112 58-167 (537)
151 2hjg_A GTP-binding protein ENG 99.4 6.8E-14 2.3E-18 105.3 5.2 100 1-112 57-164 (436)
152 2c78_A Elongation factor TU-A; 99.4 9.3E-14 3.2E-18 103.7 5.5 91 1-99 81-180 (405)
153 3j2k_7 ERF3, eukaryotic polype 99.4 3.6E-13 1.2E-17 101.5 8.5 98 1-105 101-217 (439)
154 1d2e_A Elongation factor TU (E 99.4 1.6E-13 5.5E-18 102.2 6.4 103 1-111 72-193 (397)
155 1kk1_A EIF2gamma; initiation o 99.4 3.4E-13 1.2E-17 100.7 7.5 102 1-112 89-199 (410)
156 1jny_A EF-1-alpha, elongation 99.4 9.4E-14 3.2E-18 104.5 4.4 104 1-105 90-205 (435)
157 3l2o_B F-box only protein 4; s 99.4 2.4E-13 8.4E-18 96.6 5.6 107 1-112 193-307 (312)
158 3h2y_A GTPase family protein; 99.4 2E-12 6.9E-17 95.4 10.3 96 5-110 56-157 (368)
159 3geh_A MNME, tRNA modification 99.4 6.3E-13 2.1E-17 100.7 7.6 99 1-114 278-385 (462)
160 2elf_A Protein translation elo 99.4 8.6E-13 2.9E-17 97.4 7.6 103 1-113 66-180 (370)
161 1ega_A Protein (GTP-binding pr 99.4 4.3E-13 1.5E-17 96.5 5.7 103 1-112 62-174 (301)
162 3p26_A Elongation factor 1 alp 99.4 9.8E-13 3.4E-17 100.2 7.7 96 1-102 117-227 (483)
163 1zo1_I IF2, translation initia 99.4 7.5E-14 2.6E-18 106.5 0.9 101 1-109 57-163 (501)
164 1mky_A Probable GTP-binding pr 99.3 9.3E-12 3.2E-16 93.7 11.5 106 1-114 234-356 (439)
165 1zun_B Sulfate adenylate trans 99.3 3.1E-12 1E-16 96.3 8.7 97 1-105 110-216 (434)
166 1r5b_A Eukaryotic peptide chai 99.3 2.1E-13 7.1E-18 103.5 2.2 100 1-104 127-243 (467)
167 3ec1_A YQEH GTPase; atnos1, at 99.3 4.8E-12 1.7E-16 93.4 8.2 98 4-111 57-160 (369)
168 3avx_A Elongation factor TS, e 99.3 1.7E-12 5.8E-17 106.5 6.2 103 1-111 365-484 (1289)
169 2qtf_A Protein HFLX, GTP-bindi 99.3 1.5E-11 5.2E-16 90.6 10.5 110 1-115 232-356 (364)
170 2aka_B Dynamin-1; fusion prote 99.3 8E-13 2.7E-17 94.4 3.6 105 1-112 131-252 (299)
171 1f60_A Elongation factor EEF1A 99.3 3E-12 1E-16 96.9 6.8 95 1-103 91-202 (458)
172 2ged_A SR-beta, signal recogni 99.3 3.3E-12 1.1E-16 85.5 5.7 69 1-69 97-170 (193)
173 2dy1_A Elongation factor G; tr 99.3 1.7E-11 5.9E-16 96.5 10.1 60 1-68 80-139 (665)
174 4dcu_A GTP-binding protein ENG 99.3 4.4E-12 1.5E-16 96.0 6.3 100 1-112 77-184 (456)
175 1dar_A EF-G, elongation factor 99.2 4.9E-11 1.7E-15 94.3 10.8 61 1-69 83-143 (691)
176 2rdo_7 EF-G, elongation factor 99.2 1.3E-10 4.3E-15 92.2 11.5 61 1-69 88-148 (704)
177 3izq_1 HBS1P, elongation facto 99.2 8E-12 2.7E-16 97.6 4.4 96 1-103 251-362 (611)
178 2h5e_A Peptide chain release f 99.2 1.9E-10 6.5E-15 88.5 10.8 61 1-69 88-148 (529)
179 2xtp_A GTPase IMAP family memb 99.2 2.2E-11 7.5E-16 85.5 5.2 110 1-115 77-210 (260)
180 2qag_A Septin-2, protein NEDD5 99.2 1.5E-12 5E-17 95.9 -1.4 104 1-115 101-235 (361)
181 2xex_A Elongation factor G; GT 99.2 2.7E-10 9.3E-15 90.1 10.7 61 1-69 81-141 (693)
182 3mca_A HBS1, elongation factor 99.1 2.4E-12 8.3E-17 100.2 -1.8 90 1-101 261-371 (592)
183 2j69_A Bacterial dynamin-like 99.1 9.6E-11 3.3E-15 92.7 7.1 106 1-113 180-325 (695)
184 1pui_A ENGB, probable GTP-bind 99.1 2E-10 6.8E-15 77.7 7.8 102 1-112 78-198 (210)
185 3lxx_A GTPase IMAP family memb 99.1 5.7E-10 1.9E-14 77.4 9.7 109 1-114 84-215 (239)
186 3t5d_A Septin-7; GTP-binding p 99.0 7.1E-11 2.4E-15 83.7 2.7 84 19-111 116-202 (274)
187 1jwy_B Dynamin A GTPase domain 99.0 1.4E-10 4.9E-15 83.3 4.1 105 1-113 137-262 (315)
188 3t34_A Dynamin-related protein 99.0 4.9E-11 1.7E-15 87.6 1.6 104 1-111 142-259 (360)
189 3vqt_A RF-3, peptide chain rel 99.0 2.7E-09 9.1E-14 82.5 11.0 61 1-69 106-166 (548)
190 3lxw_A GTPase IMAP family memb 99.0 1.3E-09 4.5E-14 76.2 7.0 110 1-115 76-210 (247)
191 1udx_A The GTP-binding protein 99.0 2E-09 6.9E-14 80.5 8.2 110 1-115 211-327 (416)
192 1puj_A YLQF, conserved hypothe 99.0 2.3E-09 7.8E-14 76.4 7.8 95 2-113 6-106 (282)
193 1yrb_A ATP(GTP)binding protein 99.0 1.6E-09 5.5E-14 75.8 6.8 105 1-113 115-257 (262)
194 2wsm_A Hydrogenase expression/ 98.9 8.6E-10 2.9E-14 75.3 4.5 86 17-114 128-215 (221)
195 3p32_A Probable GTPase RV1496/ 98.9 3.1E-10 1E-14 83.3 2.1 98 1-113 178-284 (355)
196 2x2e_A Dynamin-1; nitration, h 98.8 5.2E-10 1.8E-14 82.0 1.1 102 1-109 136-254 (353)
197 3j25_A Tetracycline resistance 98.8 2.9E-09 1E-13 83.6 5.3 61 1-69 73-133 (638)
198 2p67_A LAO/AO transport system 98.8 7E-09 2.4E-13 75.7 5.6 98 1-113 155-261 (341)
199 1n0u_A EF-2, elongation factor 98.8 4.6E-09 1.6E-13 84.8 4.4 60 1-68 104-163 (842)
200 2qnr_A Septin-2, protein NEDD5 98.7 3.1E-09 1.1E-13 76.4 2.3 60 54-115 154-216 (301)
201 4fn5_A EF-G 1, elongation fact 98.7 9.8E-08 3.4E-12 75.8 10.4 60 1-68 91-150 (709)
202 3zvr_A Dynamin-1; hydrolase, D 98.7 8.4E-09 2.9E-13 82.1 3.3 96 7-110 175-275 (772)
203 2www_A Methylmalonic aciduria 98.6 6.5E-08 2.2E-12 70.8 6.7 97 1-112 173-278 (349)
204 3def_A T7I23.11 protein; chlor 98.6 6.3E-08 2.2E-12 68.1 5.4 66 1-69 90-165 (262)
205 1wxq_A GTP-binding protein; st 98.6 1.8E-08 6.3E-13 75.0 2.6 46 55-105 214-262 (397)
206 2qag_C Septin-7; cell cycle, c 98.6 9E-09 3.1E-13 77.1 0.6 88 14-111 132-225 (418)
207 1t9h_A YLOQ, probable GTPase E 98.5 3.1E-08 1.1E-12 71.3 1.8 92 7-106 75-170 (307)
208 2qpt_A EH domain-containing pr 98.5 9E-08 3.1E-12 74.0 3.8 62 1-69 160-232 (550)
209 3cnl_A YLQF, putative uncharac 98.4 7.9E-08 2.7E-12 67.8 2.5 92 3-109 5-97 (262)
210 1h65_A Chloroplast outer envel 98.4 3.7E-07 1.3E-11 64.3 5.5 66 1-69 93-168 (270)
211 2hf9_A Probable hydrogenase ni 98.3 4.9E-07 1.7E-11 61.6 4.8 59 55-113 164-224 (226)
212 2qm8_A GTPase/ATPase; G protei 98.2 1.6E-06 5.5E-11 63.2 5.6 97 1-112 154-260 (337)
213 2rcn_A Probable GTPase ENGC; Y 98.1 6.2E-06 2.1E-10 60.5 6.7 83 15-107 127-213 (358)
214 2dby_A GTP-binding protein; GD 98.1 5.7E-06 1.9E-10 61.0 6.0 52 55-107 201-256 (368)
215 1jal_A YCHF protein; nucleotid 98.1 6.4E-05 2.2E-09 55.3 11.4 42 54-96 198-240 (363)
216 4a9a_A Ribosome-interacting GT 96.8 0.013 4.3E-07 43.3 9.6 68 15-86 146-222 (376)
217 2j37_W Signal recognition part 96.5 0.0023 7.9E-08 49.0 4.0 79 18-110 213-310 (504)
218 3dm5_A SRP54, signal recogniti 94.8 0.073 2.5E-06 40.1 6.3 67 17-99 211-277 (443)
219 2ohf_A Protein OLA1, GTP-bindi 94.8 0.012 4E-07 43.8 1.9 33 1-33 92-131 (396)
220 2v3c_C SRP54, signal recogniti 93.8 0.26 8.9E-06 37.0 7.5 60 18-92 210-271 (432)
221 1j8m_F SRP54, signal recogniti 93.8 0.13 4.3E-06 36.7 5.5 86 1-103 187-281 (297)
222 3kl4_A SRP54, signal recogniti 92.5 0.36 1.2E-05 36.3 6.4 67 18-100 211-277 (433)
223 4dzz_A Plasmid partitioning pr 91.7 0.55 1.9E-05 30.7 6.1 77 1-85 82-158 (206)
224 3cwq_A Para family chromosome 89.5 2.1 7.1E-05 28.4 7.5 66 12-85 84-149 (209)
225 2qag_B Septin-6, protein NEDD5 88.6 0.12 4E-06 38.8 0.8 40 21-69 151-190 (427)
226 3ec1_A YQEH GTPase; atnos1, at 88.3 0.018 6.2E-07 42.3 -3.8 73 17-98 244-316 (369)
227 3k9g_A PF-32 protein; ssgcid, 85.8 1.9 6.5E-05 29.5 5.7 49 12-66 160-208 (267)
228 3end_A Light-independent proto 84.6 8.1 0.00028 26.9 9.3 62 14-85 175-237 (307)
229 3ea0_A ATPase, para family; al 84.4 3.7 0.00013 27.4 6.5 72 11-92 133-204 (245)
230 4a9a_A Ribosome-interacting GT 82.1 2.2 7.5E-05 31.4 4.9 74 54-134 248-323 (376)
231 3sop_A Neuronal-specific septi 78.8 5 0.00017 27.8 5.6 45 16-69 109-154 (270)
232 2ph1_A Nucleotide-binding prot 77.8 4.2 0.00014 27.8 5.0 42 18-67 152-194 (262)
233 1wcv_1 SOJ, segregation protei 75.2 11 0.00038 25.5 6.5 64 1-68 118-182 (257)
234 3kjh_A CO dehydrogenase/acetyl 74.9 8.1 0.00028 25.6 5.7 61 12-85 147-207 (254)
235 3q9l_A Septum site-determining 72.3 8.5 0.00029 25.8 5.4 64 1-67 120-185 (260)
236 3szr_A Interferon-induced GTP- 70.1 7.2 0.00025 30.4 5.0 56 7-69 172-228 (608)
237 1tq4_A IIGP1, interferon-induc 69.4 5.2 0.00018 29.8 3.9 59 55-113 175-253 (413)
238 3e70_C DPA, signal recognition 68.3 9.5 0.00033 27.3 5.0 70 18-103 241-310 (328)
239 1hyq_A MIND, cell division inh 68.2 24 0.00083 23.7 7.4 65 12-86 126-190 (263)
240 1s2d_A Purine trans deoxyribos 67.6 12 0.00042 24.0 5.0 39 15-62 78-116 (167)
241 1zu4_A FTSY; GTPase, signal re 63.5 14 0.00049 26.3 5.2 68 18-102 227-295 (320)
242 1g3q_A MIND ATPase, cell divis 63.4 19 0.00065 23.7 5.6 50 12-68 127-176 (237)
243 1ni3_A YCHF GTPase, YCHF GTP-b 58.0 7.8 0.00027 28.6 3.0 42 55-96 224-269 (392)
244 1vma_A Cell division protein F 57.7 27 0.00092 24.7 5.7 69 18-102 222-290 (306)
245 1rj9_A FTSY, signal recognitio 55.9 37 0.0013 23.9 6.2 70 16-101 218-287 (304)
246 1f8y_A Nucleoside 2-deoxyribos 55.4 14 0.0005 23.4 3.7 42 15-65 75-116 (157)
247 3ehd_A Uncharacterized conserv 55.2 22 0.00074 22.8 4.5 41 15-64 66-106 (162)
248 1bif_A 6-phosphofructo-2-kinas 53.6 32 0.0011 25.7 5.8 32 13-45 115-146 (469)
249 2xzm_U Ribosomal protein L7AE 52.3 11 0.00036 23.2 2.5 41 17-67 39-79 (126)
250 2yhs_A FTSY, cell division pro 51.8 40 0.0014 25.8 6.1 69 19-103 412-480 (503)
251 3bfv_A CAPA1, CAPB2, membrane 51.4 16 0.00054 25.2 3.6 46 15-68 211-257 (271)
252 1ni3_A YCHF GTPase, YCHF GTP-b 48.5 24 0.00082 26.0 4.4 30 1-30 91-127 (392)
253 2xxa_A Signal recognition part 48.3 42 0.0014 25.0 5.7 58 1-69 190-254 (433)
254 2ffh_A Protein (FFH); SRP54, s 48.3 82 0.0028 23.4 7.2 61 18-93 210-271 (425)
255 2xj4_A MIPZ; replication, cell 47.4 27 0.00093 24.0 4.3 27 1-29 110-136 (286)
256 1ls1_A Signal recognition part 46.4 58 0.002 22.7 6.0 67 18-101 210-277 (295)
257 3jyw_G 60S ribosomal protein L 45.8 17 0.00059 21.8 2.7 42 17-68 40-81 (113)
258 2oze_A ORF delta'; para, walke 43.8 28 0.00094 24.0 3.9 68 15-85 173-241 (298)
259 1cp2_A CP2, nitrogenase iron p 43.5 71 0.0024 21.3 8.4 63 17-86 139-202 (269)
260 3k1y_A Oxidoreductase; structu 42.7 37 0.0013 22.1 4.2 69 14-87 81-150 (191)
261 2f62_A Nucleoside 2-deoxyribos 41.5 39 0.0013 21.5 4.1 42 14-64 63-107 (161)
262 4hs4_A Chromate reductase; tri 41.2 49 0.0017 21.6 4.6 72 14-86 69-140 (199)
263 3la6_A Tyrosine-protein kinase 38.3 82 0.0028 21.8 5.6 48 15-69 221-268 (286)
264 1eiw_A Hypothetical protein MT 38.3 51 0.0017 19.6 4.0 40 16-63 36-75 (111)
265 2vzf_A NADH-dependent FMN redu 38.1 29 0.00099 22.4 3.1 68 15-87 66-134 (197)
266 2khz_A C-MYC-responsive protei 37.6 62 0.0021 20.5 4.6 42 14-66 73-114 (165)
267 2px0_A Flagellar biosynthesis 37.2 61 0.0021 22.6 4.9 62 18-93 212-273 (296)
268 2afh_E Nitrogenase iron protei 36.1 1E+02 0.0035 21.0 7.9 63 17-86 142-205 (289)
269 3u7r_A NADPH-dependent FMN red 34.7 64 0.0022 21.0 4.4 71 13-86 62-135 (190)
270 3hyn_A Putative signal transdu 34.6 88 0.003 20.6 4.9 46 12-64 73-118 (189)
271 3v7e_A Ribosome-associated pro 34.2 13 0.00045 20.7 0.8 13 55-67 53-65 (82)
272 1sqs_A Conserved hypothetical 33.2 48 0.0017 22.1 3.7 72 15-87 76-147 (242)
273 3svl_A Protein YIEF; E. coli C 31.9 57 0.0019 21.1 3.8 72 14-86 68-139 (193)
274 2fz5_A Flavodoxin; alpha/beta 31.7 48 0.0017 19.5 3.2 66 15-87 43-110 (137)
275 3eb2_A Putative dihydrodipicol 31.5 88 0.003 21.9 4.9 58 17-81 98-155 (300)
276 2zay_A Response regulator rece 30.8 83 0.0028 18.4 8.4 78 18-114 52-129 (147)
277 1t0i_A YLR011WP; FMN binding p 30.6 36 0.0012 21.7 2.6 67 14-87 80-146 (191)
278 2ark_A Flavodoxin; FMN, struct 30.4 65 0.0022 20.4 3.9 49 15-64 49-97 (188)
279 3fvw_A Putative NAD(P)H-depend 29.6 67 0.0023 20.6 3.8 73 14-87 63-141 (192)
280 3cio_A ETK, tyrosine-protein k 28.6 90 0.0031 21.7 4.6 46 15-68 233-279 (299)
281 1rtt_A Conserved hypothetical 28.5 43 0.0015 21.4 2.7 71 15-86 69-139 (193)
282 3ez9_A Para; DNA binding, wing 28.4 1.4E+02 0.0049 21.5 5.8 19 12-30 263-281 (403)
283 4fyk_A Deoxyribonucleoside 5'- 28.3 1E+02 0.0035 19.4 4.3 77 15-109 65-141 (152)
284 2yxg_A DHDPS, dihydrodipicolin 28.2 90 0.0031 21.7 4.5 58 17-85 94-155 (289)
285 2ehh_A DHDPS, dihydrodipicolin 28.1 93 0.0032 21.7 4.5 58 17-85 94-155 (294)
286 2vc6_A MOSA, dihydrodipicolina 28.1 91 0.0031 21.7 4.5 58 17-85 94-155 (292)
287 4a17_F RPL7A, 60S ribosomal pr 27.9 33 0.0011 23.8 2.1 75 17-115 139-215 (255)
288 1rli_A Trp repressor binding p 27.8 61 0.0021 20.2 3.4 73 15-87 68-149 (184)
289 3qze_A DHDPS, dihydrodipicolin 27.6 94 0.0032 22.0 4.5 54 17-81 117-174 (314)
290 3m5v_A DHDPS, dihydrodipicolin 27.5 93 0.0032 21.8 4.5 56 17-83 102-161 (301)
291 3j21_Z 50S ribosomal protein L 27.3 91 0.0031 17.7 4.5 42 17-69 30-72 (99)
292 1xky_A Dihydrodipicolinate syn 27.3 91 0.0031 21.9 4.4 39 17-61 106-144 (301)
293 1w3i_A EDA, 2-keto-3-deoxy glu 27.2 1E+02 0.0034 21.5 4.6 39 17-61 90-129 (293)
294 3daq_A DHDPS, dihydrodipicolin 27.1 92 0.0031 21.7 4.4 55 17-82 96-154 (292)
295 3tak_A DHDPS, dihydrodipicolin 27.1 99 0.0034 21.5 4.5 54 17-81 95-152 (291)
296 2ale_A SNU13, NHP2/L7AE family 26.9 18 0.00063 22.3 0.6 76 18-114 48-124 (134)
297 3cpr_A Dihydrodipicolinate syn 26.8 1E+02 0.0034 21.7 4.5 40 17-62 110-149 (304)
298 3flu_A DHDPS, dihydrodipicolin 26.3 1E+02 0.0035 21.5 4.5 39 17-61 101-139 (297)
299 2lbw_A H/ACA ribonucleoprotein 26.1 20 0.0007 21.6 0.7 41 17-67 35-75 (121)
300 1f6k_A N-acetylneuraminate lya 25.9 99 0.0034 21.5 4.4 54 17-81 98-155 (293)
301 3lcm_A SMU.1420, putative oxid 25.6 1.1E+02 0.0038 19.6 4.4 51 15-65 70-129 (196)
302 2ojp_A DHDPS, dihydrodipicolin 25.1 96 0.0033 21.6 4.2 39 17-61 95-133 (292)
303 3tnt_A SARS coronavirus main p 25.1 51 0.0017 23.3 2.6 45 69-113 222-274 (306)
304 1o5k_A DHDPS, dihydrodipicolin 25.0 1.2E+02 0.004 21.4 4.6 62 17-85 106-167 (306)
305 2wkj_A N-acetylneuraminate lya 25.0 1E+02 0.0035 21.6 4.3 55 17-81 105-163 (303)
306 3l21_A DHDPS, dihydrodipicolin 24.8 92 0.0031 21.9 4.0 54 17-81 109-166 (304)
307 2v9d_A YAGE; dihydrodipicolini 24.7 1E+02 0.0035 22.1 4.3 62 17-85 125-186 (343)
308 2amj_A Modulator of drug activ 24.6 1.4E+02 0.0049 19.3 4.8 32 15-46 67-98 (204)
309 3d0c_A Dihydrodipicolinate syn 24.6 89 0.0031 22.1 4.0 54 17-81 105-158 (314)
310 3na8_A Putative dihydrodipicol 24.4 89 0.003 22.1 3.9 62 17-85 118-179 (315)
311 2a5l_A Trp repressor binding p 24.4 69 0.0024 20.3 3.2 73 14-86 67-140 (200)
312 2r8w_A AGR_C_1641P; APC7498, d 24.4 88 0.003 22.3 3.9 55 17-82 128-186 (332)
313 2zki_A 199AA long hypothetical 24.3 74 0.0025 20.2 3.3 72 15-86 67-139 (199)
314 3e96_A Dihydrodipicolinate syn 24.2 87 0.003 22.1 3.8 54 17-81 105-158 (316)
315 2rfg_A Dihydrodipicolinate syn 24.2 92 0.0032 21.8 3.9 39 17-61 94-132 (297)
316 1d4a_A DT-diaphorase, quinone 23.7 1.1E+02 0.0036 21.0 4.1 50 16-65 91-149 (273)
317 3izc_H 60S ribosomal protein R 23.6 37 0.0013 23.6 1.7 41 17-67 146-186 (256)
318 2r91_A 2-keto-3-deoxy-(6-phosp 23.6 99 0.0034 21.4 4.0 39 17-61 89-128 (286)
319 2nuw_A 2-keto-3-deoxygluconate 23.5 99 0.0034 21.5 4.0 39 17-61 90-129 (288)
320 3pzx_A Formate--tetrahydrofola 22.9 79 0.0027 24.5 3.5 56 53-113 372-430 (557)
321 3iz5_f 60S ribosomal protein L 22.0 64 0.0022 19.1 2.4 14 54-67 67-81 (112)
322 1t5b_A Acyl carrier protein ph 22.0 92 0.0032 19.7 3.4 73 15-87 83-167 (201)
323 1xbi_A 50S ribosomal protein L 21.5 42 0.0014 20.1 1.5 41 17-67 44-84 (120)
324 3gfs_A FMN-dependent NADPH-azo 21.4 28 0.00095 21.9 0.7 69 15-87 60-128 (174)
325 2hpv_A FMN-dependent NADH-azor 21.1 1.3E+02 0.0045 19.2 4.1 73 15-87 91-173 (208)
326 3jte_A Response regulator rece 21.1 1.3E+02 0.0045 17.3 9.3 76 18-114 49-124 (143)
327 2qr3_A Two-component system re 21.0 1.3E+02 0.0044 17.2 5.8 46 54-111 79-124 (140)
328 2yvt_A Hypothetical protein AQ 20.6 1.4E+02 0.0048 19.6 4.2 16 17-32 31-46 (260)
329 1ko7_A HPR kinase/phosphatase; 20.4 78 0.0027 22.5 2.9 49 54-109 79-127 (314)
330 3ha2_A NADPH-quinone reductase 20.3 1.6E+02 0.0053 18.8 4.2 51 14-64 47-101 (177)
331 2nx2_A Hypothetical protein YP 20.2 1.3E+02 0.0045 19.3 3.8 18 13-30 125-142 (181)
332 2q62_A ARSH; alpha/beta, flavo 20.2 96 0.0033 21.0 3.3 73 14-87 94-167 (247)
333 3b4u_A Dihydrodipicolinate syn 20.1 1.2E+02 0.0043 21.0 3.9 63 17-85 97-162 (294)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.95 E-value=5.9e-28 Score=166.78 Aligned_cols=111 Identities=38% Similarity=0.528 Sum_probs=98.6
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||||+|..+++.|+++++++++|||++++.||+.+..|+..+.... .+++|+||||||+|+.. +.+..+++..
T Consensus 68 DtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~----~~~~piilVgNK~Dl~~~r~V~~~e~~~ 143 (216)
T 4dkx_A 68 DTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTER----GSDVIIMLVGNKTDLADKRQVSIEEGER 143 (216)
T ss_dssp CCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH----TTSSEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred ECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhc----CCCCeEEEEeeccchHhcCcccHHHHhh
Confidence 899999999999999999999999999999999999999999886433 36799999999999977 7899999999
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 116 (142)
+++.++ .+|++|||++|.||+++|..|++.+.....
T Consensus 144 ~a~~~~-~~~~e~SAktg~nV~e~F~~i~~~i~~~~~ 179 (216)
T 4dkx_A 144 KAKELN-VMFIETSAKAGYNVKQLFRRVAAALPGMES 179 (216)
T ss_dssp HHHHHT-CEEEEEBTTTTBSHHHHHHHHHHHC-----
T ss_pred HHHHhC-CeeEEEeCCCCcCHHHHHHHHHHHHHhhhc
Confidence 999999 469999999999999999999999876543
No 2
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.90 E-value=8.3e-23 Score=139.07 Aligned_cols=112 Identities=32% Similarity=0.539 Sum_probs=100.7
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++|+|||++++.++..+..|+..+.... ..++|++||+||+|+.. +.+..+++..
T Consensus 84 Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~NK~Dl~~~~~v~~~~~~~ 159 (201)
T 2hup_A 84 DTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA----GSNIVQLLIGNKSDLSELREVSLAEAQS 159 (201)
T ss_dssp CCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred ECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc----CCCCCEEEEEECCccccccccCHHHHHH
Confidence 899999999999999999999999999999999999999998886432 35799999999999976 6678888999
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 116 (142)
++...++.++++|||+++.|++++|.+|+..+.++..
T Consensus 160 ~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~ 196 (201)
T 2hup_A 160 LAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHG 196 (201)
T ss_dssp HHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence 9999986479999999999999999999999987654
No 3
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.89 E-value=1.9e-22 Score=132.66 Aligned_cols=110 Identities=16% Similarity=0.244 Sum_probs=82.8
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++.+|++++|||++++.++..+..|+..+... ....++|+++|+||+|+.+ +.+..+....
T Consensus 55 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 131 (166)
T 3q72_A 55 DIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRA---RQTDDVPIILVGNKSDLVRSREVSVDEGRA 131 (166)
T ss_dssp ECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHC---C---CCCEEEEEECTTCCSSCCSCHHHHHH
T ss_pred ECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHh---cCCCCCCEEEEEeccccccccccCHHHHHH
Confidence 89999999999999999999999999999999999999999888632 2346899999999999976 6778888888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
++...+ .+++++||++|.|++++|.+|.+.+.++
T Consensus 132 ~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 165 (166)
T 3q72_A 132 CAVVFD-CKFIETSAALHHNVQALFEGVVRQIRLR 165 (166)
T ss_dssp HHHHTT-CEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred HHHHhC-CcEEEeccCCCCCHHHHHHHHHHHHHhc
Confidence 999988 5799999999999999999999998765
No 4
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.89 E-value=1.5e-22 Score=136.47 Aligned_cols=112 Identities=34% Similarity=0.571 Sum_probs=99.8
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++++|||++++.++..+..|+..+.... ..++|+++|+||+|+.. +.+.......
T Consensus 71 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 146 (196)
T 3tkl_A 71 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA----SENVNKLLVGNKCDLTTKKVVDYTTAKE 146 (196)
T ss_dssp EECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECTTCTTTCCSCHHHHHH
T ss_pred ECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhc----CCCCCEEEEEECcccccccccCHHHHHH
Confidence 899999999999999999999999999999999999999998886443 35789999999999976 6677888889
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhCC
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGL 117 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~ 117 (142)
++..++ .+++++||+++.|++++|.+|.+.+.++...
T Consensus 147 ~~~~~~-~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~~ 183 (196)
T 3tkl_A 147 FADSLG-IPFLETSAKNATNVEQSFMTMAAEIKKRMGP 183 (196)
T ss_dssp HHHHTT-CCEEEECTTTCTTHHHHHHHHHHHHHHHC--
T ss_pred HHHHcC-CcEEEEeCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 999998 5699999999999999999999999987653
No 5
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.89 E-value=3.6e-22 Score=133.40 Aligned_cols=109 Identities=30% Similarity=0.449 Sum_probs=98.8
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++++|||++++.|+..+..|+..+.... ...++|+++|+||+|+.. +.+..+.+..
T Consensus 72 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~ 148 (183)
T 3kkq_A 72 DTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK---DRESFPMILVANKVDLMHLRKVTRDQGKE 148 (183)
T ss_dssp ECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHH---TSSCCCEEEEEECTTCSTTCCSCHHHHHH
T ss_pred ECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCcEEEEEECCCchhccCcCHHHHHH
Confidence 899999999999999999999999999999999999999998886433 446899999999999976 6788899999
Q ss_pred HHHHcCCceEEEeecc-CCCCHHHHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTK-EGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~-~~~~i~~l~~~l~~~~~~ 113 (142)
++..++ .+++++||+ ++.|++++|..|.+.+.+
T Consensus 149 ~~~~~~-~~~~~~Sa~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 149 MATKYN-IPYIETSAKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHT-CCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred HHHHhC-CeEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence 999998 569999999 999999999999998865
No 6
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.89 E-value=4.4e-22 Score=133.25 Aligned_cols=112 Identities=28% Similarity=0.501 Sum_probs=98.1
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|..++..+++++|++++|||++++.++..+..|+..+.... ...++|+++|+||+|+..+.+..+.+..+
T Consensus 58 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~ 134 (189)
T 4dsu_A 58 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVK---DSEDVPMVLVGNKCDLPSRTVDTKQAQDL 134 (189)
T ss_dssp ECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHT---TCSCCCEEEEEECTTSSSCSSCHHHHHHH
T ss_pred ECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCcEEEEEECccCcccccCHHHHHHH
Confidence 899999999999999999999999999999999999999998887433 44689999999999998767788899999
Q ss_pred HHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891 81 YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 116 (142)
+..++ .+++++||++|.|++++|.+|...+.++..
T Consensus 135 ~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 169 (189)
T 4dsu_A 135 ARSYG-IPFIETSAKTRQGVDDAFYTLVREIRKHKE 169 (189)
T ss_dssp HHHHT-CCEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHHHhhh
Confidence 99998 569999999999999999999999987653
No 7
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.89 E-value=2.7e-22 Score=136.04 Aligned_cols=111 Identities=18% Similarity=0.342 Sum_probs=98.8
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC----------
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---------- 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---------- 69 (142)
||||+++|..++..+++++|++++|||++++.++..+. .|+..+.... +++|+++|+||+|+..
T Consensus 74 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~~~~~~~~~ 148 (201)
T 2q3h_A 74 DTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-----PKAPIILVGTQSDLREDVKVLIELDK 148 (201)
T ss_dssp ECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-----SSSCEEEEEECGGGGGCHHHHHHHHT
T ss_pred ECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECHhhhhchhhhhhhcc
Confidence 89999999999999999999999999999999999986 7998887544 5899999999999853
Q ss_pred ---CCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891 70 ---RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 70 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 116 (142)
+.+..+....++..++..++++|||+++.|++++|.+|+..+.++..
T Consensus 149 ~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 149 CKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp TTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred cccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhcccc
Confidence 34677888889988886579999999999999999999999988764
No 8
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.89 E-value=5.3e-22 Score=134.59 Aligned_cols=111 Identities=15% Similarity=0.141 Sum_probs=97.4
Q ss_pred CCCcchhhhh-hhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHH
Q psy10891 1 MTEGQERFTW-MTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIE 78 (142)
Q Consensus 1 Dt~G~e~~~~-~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~ 78 (142)
||+|++++.. ++..+++++|++|+|||++++.||..+..|+..+.... ...++|+|+|+||+|+.. +.+..+++.
T Consensus 78 Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~v~~~~~~ 154 (195)
T 3cbq_A 78 DIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGR---PHHDLPVILVGNKSDLARSREVSLEEGR 154 (195)
T ss_dssp CCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHS---TTSCCCEEEEEECTTCTTTCCSCHHHHH
T ss_pred ecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEeechhccccCCcCHHHHH
Confidence 8999998875 88899999999999999999999999999998886432 235799999999999976 667888888
Q ss_pred HHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 79 CFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 79 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
.++..++ .++++|||+++.|++++|..|+..+.++.
T Consensus 155 ~~a~~~~-~~~~e~Sa~~~~~v~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 155 HLAGTLS-CKHIETSAALHHNTRELFEGAVRQIRLRR 190 (195)
T ss_dssp HHHHHTT-CEEEEEBTTTTBSHHHHHHHHHHHHHTTC
T ss_pred HHHHHhC-CEEEEEcCCCCCCHHHHHHHHHHHHHHhc
Confidence 9999888 57999999999999999999999987544
No 9
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.89 E-value=2.3e-22 Score=136.95 Aligned_cols=111 Identities=32% Similarity=0.532 Sum_probs=99.2
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++|+|||++++.++..+..|+..+.... ..++|+++|+||+|+.. +.+..+....
T Consensus 63 Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~ 138 (206)
T 2bcg_Y 63 DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA----TSTVLKLLVGNKCDLKDKRVVEYDVAKE 138 (206)
T ss_dssp CCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS----CTTCEEEEEEECTTCTTTCCSCHHHHHH
T ss_pred eCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc----CCCCCEEEEEECCCCccccccCHHHHHH
Confidence 899999999999999999999999999999999999999998886432 35789999999999976 5677888888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 116 (142)
++...+ .+++++||++|.|++++|.+|...+.+...
T Consensus 139 ~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~ 174 (206)
T 2bcg_Y 139 FADANK-MPFLETSALDSTNVEDAFLTMARQIKESMS 174 (206)
T ss_dssp HHHHTT-CCEEECCTTTCTTHHHHHHHHHHHHHHHCC
T ss_pred HHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence 998888 469999999999999999999999987643
No 10
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.89 E-value=8.4e-23 Score=140.41 Aligned_cols=110 Identities=15% Similarity=0.251 Sum_probs=98.5
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHH-HHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC----------
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKN-TLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---------- 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---------- 69 (142)
||||+++|..++..+++++|++|+|||++++.|+.. +..|+..+.... +++|++||+||+|+..
T Consensus 81 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~ 155 (214)
T 3q3j_B 81 DTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-----PSTRVLLIGCKTDLRTDLSTLMELSH 155 (214)
T ss_dssp EECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC-----TTSEEEEEEECGGGGGCHHHHHHHHH
T ss_pred ECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEEChhhccchhhhhhhcc
Confidence 899999999999999999999999999999999998 689999987554 6899999999999853
Q ss_pred ---CCCCHHHHHHHHHHcCCceEEEeeccCCCC-HHHHHHHHHHHHHHHh
Q psy10891 70 ---RQVDINDIECFYKEHNFIGWTETSTKEGLM-VNDSMKFLLDVLMRQE 115 (142)
Q Consensus 70 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-i~~l~~~l~~~~~~~~ 115 (142)
+.+..+.+..++..+++.++++|||+++.| ++++|..++..+.+..
T Consensus 156 ~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~ 205 (214)
T 3q3j_B 156 QKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 205 (214)
T ss_dssp TTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC--
T ss_pred cccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhccC
Confidence 458889999999999964799999999998 9999999999988654
No 11
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.88 E-value=2e-22 Score=134.66 Aligned_cols=111 Identities=32% Similarity=0.527 Sum_probs=85.4
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++++|||++++.++..+..|+..+.... ..++|+++|+||+|+.. +.+..+.+..
T Consensus 63 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~nK~Dl~~~~~v~~~~~~~ 138 (183)
T 2fu5_C 63 DTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHA----SADVEKMILGNKCDVNDKRQVSKERGEK 138 (183)
T ss_dssp EC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS----CTTCEEEEEEEC--CCSCCCSCHHHHHH
T ss_pred cCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc----CCCCCEEEEEECccCCccCcCCHHHHHH
Confidence 899999999999999999999999999999999999999998886432 25789999999999976 5677888899
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 116 (142)
++..++ .+++++||+++.|++++|.+|...+.++..
T Consensus 139 ~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~i~~~~~ 174 (183)
T 2fu5_C 139 LALDYG-IKFMETSAKANINVENAFFTLARDIKAKMD 174 (183)
T ss_dssp HHHHHT-CEEEECCC---CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 999988 569999999999999999999999987643
No 12
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.88 E-value=4.4e-22 Score=132.30 Aligned_cols=112 Identities=28% Similarity=0.444 Sum_probs=99.5
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++++|||++++.++..+..|+..+.... ...++|+++|+||+|+.. +.+..+....
T Consensus 63 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~~v~~~~~~~ 139 (181)
T 2fn4_A 63 DTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVK---DRDDFPVVLVGNKADLESQRQVPRSEASA 139 (181)
T ss_dssp ECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHH---TSSCCCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred ECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECcccccccccCHHHHHH
Confidence 899999999999999999999999999999999999999998885332 345799999999999976 6677888888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 116 (142)
++...+ .+++++||+++.|++++|.+|...+.+...
T Consensus 140 ~~~~~~-~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~ 175 (181)
T 2fn4_A 140 FGASHH-VAYFEASAKLRLNVDEAFEQLVRAVRKYQE 175 (181)
T ss_dssp HHHHTT-CEEEECBTTTTBSHHHHHHHHHHHHHHHTT
T ss_pred HHHHcC-CeEEEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence 888888 569999999999999999999999987654
No 13
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.88 E-value=4.8e-22 Score=133.99 Aligned_cols=111 Identities=32% Similarity=0.520 Sum_probs=99.3
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++++|||++++.++..+..|+..+.... ..++|+++|+||+|+.. +.+..+.+..
T Consensus 76 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~----~~~~piilv~nK~Dl~~~~~v~~~~~~~ 151 (191)
T 2a5j_A 76 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS----SSNMVIMLIGNKSDLESRRDVKREEGEA 151 (191)
T ss_dssp CCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred ECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc----CCCCCEEEEEECcccCCccccCHHHHHH
Confidence 899999999999999999999999999999999999999998886432 35799999999999976 5677888889
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 116 (142)
++...+ .+++++||+++.|++++|.+|+..+.++..
T Consensus 152 ~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 187 (191)
T 2a5j_A 152 FAREHG-LIFMETSAKTACNVEEAFINTAKEIYRKIQ 187 (191)
T ss_dssp HHHHHT-CEEEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999888 469999999999999999999999987643
No 14
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.88 E-value=2.5e-22 Score=135.57 Aligned_cols=110 Identities=20% Similarity=0.379 Sum_probs=98.6
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC---CCCCHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNT-LKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---RQVDIND 76 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---~~~~~~~ 76 (142)
||||+++|..++..+++++|++++|||++++.++..+ ..|+..+.... .++|+++|+||+|+.. +.+..+.
T Consensus 77 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~~~~~~~~~ 151 (194)
T 3reg_A 77 DTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI-----DTAKTVLVGLKVDLRKDGSDDVTKQE 151 (194)
T ss_dssp EECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-----TTSEEEEEEECGGGCCTTTTCCCHHH
T ss_pred ECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEEChhhccCCCCcccHHH
Confidence 8999999999999999999999999999999999996 78888886544 6799999999999864 5678889
Q ss_pred HHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 77 IECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 77 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
+..++..+++.++++|||++|.|++++|.+|++.+.+++
T Consensus 152 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 190 (194)
T 3reg_A 152 GDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSNK 190 (194)
T ss_dssp HHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHCSC
T ss_pred HHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHhcC
Confidence 999999999655999999999999999999999987654
No 15
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.88 E-value=3.1e-22 Score=133.05 Aligned_cols=110 Identities=32% Similarity=0.587 Sum_probs=99.7
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..++.++|++++|||++++.++..+..|+..+.... +++|+++|+||+|+.. +.+..+....
T Consensus 64 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 138 (181)
T 3tw8_B 64 DTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-----DDVCRILVGNKNDDPERKVVETEDAYK 138 (181)
T ss_dssp EETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----TTSEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred cCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECCCCchhcccCHHHHHH
Confidence 899999999999999999999999999999999999999999987544 6899999999999876 5677788888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 116 (142)
++...+ .+++++||++|.|++++|.+|...+.+...
T Consensus 139 ~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 174 (181)
T 3tw8_B 139 FAGQMG-IQLFETSAKENVNVEEMFNCITELVLRAKK 174 (181)
T ss_dssp HHHHHT-CCEEECBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred HHHHcC-CeEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 999988 469999999999999999999999987654
No 16
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=8e-22 Score=133.03 Aligned_cols=107 Identities=19% Similarity=0.304 Sum_probs=96.0
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC----------
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---------- 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---------- 69 (142)
||||+++|..++..+++++|++++|||++++.++..+. .|+..+.... +++|+++|+||+|+..
T Consensus 72 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~ 146 (194)
T 2atx_A 72 DTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-----PNVPFLLIGTQIDLRDDPKTLARLND 146 (194)
T ss_dssp CCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-----TTCCEEEEEECTTSTTCHHHHHHHTT
T ss_pred ECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEEChhhcccccchhhccc
Confidence 89999999999999999999999999999999999987 7988887544 5899999999999964
Q ss_pred ---CCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 70 ---RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 70 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
+.+..++...++..++..++++|||+++.|++++|.+|++.++
T Consensus 147 ~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 147 MKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp TTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 2567788889999988657999999999999999999998876
No 17
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.88 E-value=1.3e-21 Score=129.85 Aligned_cols=114 Identities=25% Similarity=0.491 Sum_probs=99.1
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|..++..+++++|++++|||++++.++..+..|+..+..........++|+++|+||+|+..+.+..+.+..+
T Consensus 62 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~ 141 (177)
T 1wms_A 62 DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAW 141 (177)
T ss_dssp ECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHH
T ss_pred eCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHH
Confidence 89999999999999999999999999999999999999999888755432233678999999999997666788888888
Q ss_pred HHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 81 YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
+......+++++||+++.|++++|.++++.+++.
T Consensus 142 ~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 142 CRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 175 (177)
T ss_dssp HHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred HHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 8855546799999999999999999999988753
No 18
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.88 E-value=1.3e-21 Score=129.46 Aligned_cols=112 Identities=17% Similarity=0.288 Sum_probs=91.0
Q ss_pred CCCcchh--hhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHH
Q psy10891 1 MTEGQER--FTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDI 77 (142)
Q Consensus 1 Dt~G~e~--~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~ 77 (142)
||||+++ +..++..+++.+|++++|||++++.++..+..|+..+... ....++|+++|+||+|+.. +.+..++.
T Consensus 58 D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~---~~~~~~piilv~NK~Dl~~~~~v~~~~~ 134 (175)
T 2nzj_A 58 DTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRT---HQADHVPIILVGNKADLARCREVSVEEG 134 (175)
T ss_dssp CCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHC---C----CCEEEEEECTTCTTTCCSCHHHH
T ss_pred ecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHh---hccCCCCEEEEEEChhhccccccCHHHH
Confidence 8999998 6778889999999999999999999999999999888632 2335799999999999976 66778888
Q ss_pred HHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891 78 ECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 78 ~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 116 (142)
..++..++ .++++|||++|.|++++|.+|...+..+..
T Consensus 135 ~~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 172 (175)
T 2nzj_A 135 RACAVVFD-CKFIETSATLQHNVAELFEGVVRQLRLRRR 172 (175)
T ss_dssp HHHHHHHT-SEEEECBTTTTBSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcC-CeEEEEecCCCCCHHHHHHHHHHHHHHhhc
Confidence 88888888 579999999999999999999999987653
No 19
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.88 E-value=1.3e-21 Score=130.16 Aligned_cols=115 Identities=25% Similarity=0.442 Sum_probs=89.6
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC--CCCCHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH--RQVDINDIE 78 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~--~~~~~~~~~ 78 (142)
||||+++|..++..+++++|++++|||++++.++..+..|+..+..........++|+++|+||+|+.. +.+..+.+.
T Consensus 64 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~ 143 (182)
T 1ky3_A 64 DTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQ 143 (182)
T ss_dssp CCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHH
T ss_pred ECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHH
Confidence 899999999999999999999999999999999999999998887554323346899999999999954 456788888
Q ss_pred HHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 79 CFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 79 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
.++......+++++||+++.|++++|.+|...++++.
T Consensus 144 ~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 180 (182)
T 1ky3_A 144 ELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN 180 (182)
T ss_dssp HHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence 8888555467999999999999999999999998764
No 20
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.88 E-value=7.7e-22 Score=130.03 Aligned_cols=110 Identities=15% Similarity=0.142 Sum_probs=92.0
Q ss_pred CCCcchhhhh-hhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHH
Q psy10891 1 MTEGQERFTW-MTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIE 78 (142)
Q Consensus 1 Dt~G~e~~~~-~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~ 78 (142)
||||++++.. ++..+++++|++++|||++++.++..+..|+..+.... ...++|+++|+||+|+.+ +.+..+...
T Consensus 57 D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~ilv~nK~Dl~~~~~~~~~~~~ 133 (169)
T 3q85_A 57 DIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGR---PHHDLPVILVGNKSDLARSREVSLEEGR 133 (169)
T ss_dssp CCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHS---TTSCCCEEEEEECTTCGGGCCSCHHHHH
T ss_pred ECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcc---cCCCCCEEEEeeCcchhhcccCCHHHHH
Confidence 8999999987 78888999999999999999999999999998887443 334899999999999975 678889999
Q ss_pred HHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 79 CFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 79 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
.++...+. +++++||+++.|++++|.++++.+..+
T Consensus 134 ~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 134 HLAGTLSC-KHIETSAALHHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp HHHHHTTC-EEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred HHHHHcCC-cEEEecCccCCCHHHHHHHHHHHHHhc
Confidence 99999984 799999999999999999999988654
No 21
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.88 E-value=6.1e-22 Score=134.43 Aligned_cols=112 Identities=24% Similarity=0.409 Sum_probs=100.3
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++++|||++++.++..+..|+..+.... ...++|+++|+||+|+.. +.+..+.+..
T Consensus 68 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 144 (206)
T 2bov_A 68 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVK---EDENVPFLLVGNKSDLEDKRQVSVEEAKN 144 (206)
T ss_dssp ECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHT---TCSCCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred cCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEeccCccccccccHHHHHH
Confidence 899999999999999999999999999999999999999998887543 345899999999999976 5678888888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 116 (142)
++..++ .+++++||++|.|++++|.+|+..+.+++.
T Consensus 145 ~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~ 180 (206)
T 2bov_A 145 RAEQWN-VNYVETSAKTRANVDKVFFDLMREIRARKM 180 (206)
T ss_dssp HHHHHT-CEEEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHhC-CeEEEEeCCCCCCHHHHHHHHHHHHHHccc
Confidence 998888 479999999999999999999999987643
No 22
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=3.1e-22 Score=136.50 Aligned_cols=111 Identities=30% Similarity=0.461 Sum_probs=98.8
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++|+|||++++.++..+..|+..+.... ..++|+++|+||+|+.. +.+..+.+..
T Consensus 81 Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~NK~Dl~~~~~v~~~~~~~ 156 (201)
T 2ew1_A 81 DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA----SNKVITVLVGNKIDLAERREVSQQRAEE 156 (201)
T ss_dssp EECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECGGGGGGCSSCHHHHHH
T ss_pred ECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc----CCCCCEEEEEECCCCccccccCHHHHHH
Confidence 899999999999999999999999999999999999999998886432 35789999999999975 6677888888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 116 (142)
++...+ .++++|||++|.|++++|.+|+..+.++..
T Consensus 157 ~~~~~~-~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~ 192 (201)
T 2ew1_A 157 FSEAQD-MYYLETSAKESDNVEKLFLDLACRLISEAR 192 (201)
T ss_dssp HHHHHT-CCEEECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred HHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence 888888 569999999999999999999999987653
No 23
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.88 E-value=3.1e-22 Score=133.52 Aligned_cols=112 Identities=23% Similarity=0.338 Sum_probs=97.6
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++++|||++++.++..+..|+..+.... ...++|+++|+||+|+.. +.+..+.+..
T Consensus 60 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 136 (181)
T 3t5g_A 60 DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV---GKVQIPIMLVGNKKDLHMERVISYEEGKA 136 (181)
T ss_dssp ECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-------CCEEEEEECTTCTTTCCSCHHHHHH
T ss_pred eCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECccchhcceecHHHHHH
Confidence 899999999999999999999999999999999999999998886443 345799999999999976 6788899999
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 116 (142)
++..++ .+++++||+++.|++++|..|+..+.+...
T Consensus 137 ~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 172 (181)
T 3t5g_A 137 LAESWN-AAFLESSAKENQTAVDVFRRIILEAEKMDG 172 (181)
T ss_dssp HHHHTT-CEEEECCTTSHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHhC-CcEEEEecCCCCCHHHHHHHHHHHHHHhcC
Confidence 999998 469999999999999999999999987643
No 24
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=3.1e-22 Score=134.94 Aligned_cols=110 Identities=30% Similarity=0.544 Sum_probs=99.4
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++++|||++++.++..+..|+..+... ...++|+++|+||+|+.. +.+..+....
T Consensus 78 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 153 (191)
T 3dz8_A 78 DTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTY----SWDNAQVILVGNKCDMEEERVVPTEKGQL 153 (191)
T ss_dssp CHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred eCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCCEEEEEECCCCccccccCHHHHHH
Confidence 89999999999999999999999999999999999999999998643 235799999999999976 6678888899
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
++..+++ +++++||+++.|++++|.+|++.+.++.
T Consensus 154 ~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 188 (191)
T 3dz8_A 154 LAEQLGF-DFFEASAKENISVRQAFERLVDAICDKM 188 (191)
T ss_dssp HHHHHTC-EEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred HHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 9999984 6999999999999999999999998764
No 25
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.88 E-value=1.1e-21 Score=131.96 Aligned_cols=107 Identities=14% Similarity=0.208 Sum_probs=94.1
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC---CCCCHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---RQVDINDI 77 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---~~~~~~~~ 77 (142)
||||+++|. +++++|++++|||++++.||..+..|+..+... ....++|+++|+||+|+.. +.+..+++
T Consensus 73 Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~~piilv~nK~Dl~~~~~~~v~~~~~ 144 (184)
T 3ihw_A 73 DEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSF---RNASEVPMVLVGTQDAISAANPRVIDDSRA 144 (184)
T ss_dssp ECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTT---SCGGGSCEEEEEECTTCBTTBCCCSCHHHH
T ss_pred ECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHh---cCCCCCCEEEEEECcccccccccccCHHHH
Confidence 899999987 888999999999999999999999999998632 2335799999999999842 66888899
Q ss_pred HHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 78 ECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 78 ~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
..++..++..++++|||+++.|++++|.+|++.+.+..
T Consensus 145 ~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 145 RKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALR 182 (184)
T ss_dssp HHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999987667999999999999999999999998764
No 26
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.88 E-value=3.6e-22 Score=134.50 Aligned_cols=110 Identities=17% Similarity=0.254 Sum_probs=96.2
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCC------ChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLT------NQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDI 74 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~ 74 (142)
||||+++|..++..+++++|++|+|||++ +..++..+..|+..+.. ...++|+++|+||+|+.. .+..
T Consensus 80 Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~-----~~~~~piilv~NK~Dl~~-~~~~ 153 (198)
T 3t1o_A 80 TVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL-----TLDDVPIVIQVNKRDLPD-ALPV 153 (198)
T ss_dssp ECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC-----CTTSSCEEEEEECTTSTT-CCCH
T ss_pred eCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc-----ccCCCCEEEEEEchhccc-ccCH
Confidence 89999999999999999999999999999 55677777888877631 336899999999999975 4778
Q ss_pred HHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891 75 NDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 116 (142)
+++..++..+++.+++++||+++.|++++|.+|...+.++..
T Consensus 154 ~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~ 195 (198)
T 3t1o_A 154 EMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVA 195 (198)
T ss_dssp HHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence 889999999886479999999999999999999999988754
No 27
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.88 E-value=6e-22 Score=131.90 Aligned_cols=109 Identities=32% Similarity=0.492 Sum_probs=96.1
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++++|||++++.++..+..|+..+.... .+++|+++|+||+|+.. +.+..+.+..
T Consensus 67 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~p~i~v~nK~Dl~~~~~~~~~~~~~ 142 (181)
T 2efe_B 67 DTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQG----NPNMVMALAGNKSDLLDARKVTAEDAQT 142 (181)
T ss_dssp ECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS----CTTCEEEEEEECTTCTTTCCSCHHHHHH
T ss_pred eCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc----CCCCcEEEEEECCcccccccCCHHHHHH
Confidence 899999999999999999999999999999999999999998886432 35789999999999976 6677888889
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
++...+ .+++++||+++.|++++|.+|...+...
T Consensus 143 ~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 143 YAQENG-LFFMETSAKTATNVKEIFYEIARRLPRV 176 (181)
T ss_dssp HHHHTT-CEEEECCSSSCTTHHHHHHHHHHTCC--
T ss_pred HHHHcC-CEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 998888 5699999999999999999999877554
No 28
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.88 E-value=1.3e-21 Score=131.66 Aligned_cols=111 Identities=30% Similarity=0.475 Sum_probs=98.3
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|..++..+++++|++++|||++++.++..+..|+..+... ....++|+++|+||+|+..+.+..+....+
T Consensus 70 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 146 (195)
T 1x3s_A 70 DTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETY---CTRNDIVNMLVGNKIDKENREVDRNEGLKF 146 (195)
T ss_dssp EECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTC---CSCSCCEEEEEEECTTSSSCCSCHHHHHHH
T ss_pred eCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHh---cCcCCCcEEEEEECCcCcccccCHHHHHHH
Confidence 89999999999999999999999999999999999999999988532 233579999999999996666778888889
Q ss_pred HHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 81 YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
+...+ .+++++||+++.|++++|.+|...+.+..
T Consensus 147 ~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 180 (195)
T 1x3s_A 147 ARKHS-MLFIEASAKTCDGVQCAFEELVEKIIQTP 180 (195)
T ss_dssp HHHTT-CEEEECCTTTCTTHHHHHHHHHHHHHTSG
T ss_pred HHHcC-CEEEEecCCCCCCHHHHHHHHHHHHHhhh
Confidence 99888 56999999999999999999999998643
No 29
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.88 E-value=6.1e-22 Score=132.47 Aligned_cols=111 Identities=28% Similarity=0.470 Sum_probs=98.9
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++++|||++++.++..+..|+..+.... ..++|+++|+||+|+.. +.+...+...
T Consensus 65 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~ 140 (186)
T 2bme_A 65 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLA----SQNIVIILCGNKKDLDADREVTFLEASR 140 (186)
T ss_dssp EECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECGGGGGGCCSCHHHHHH
T ss_pred eCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc----CCCCcEEEEEECcccccccccCHHHHHH
Confidence 899999999999999999999999999999999999999998875432 35789999999999965 5677788888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 116 (142)
++...+ .+++++||+++.|++++|.++...+.++..
T Consensus 141 ~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 176 (186)
T 2bme_A 141 FAQENE-LMFLETSALTGENVEEAFVQCARKILNKIE 176 (186)
T ss_dssp HHHHTT-CEEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHcC-CEEEEecCCCCCCHHHHHHHHHHHHHHHhh
Confidence 998888 569999999999999999999999987654
No 30
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.88 E-value=6.4e-22 Score=131.29 Aligned_cols=108 Identities=29% Similarity=0.486 Sum_probs=96.1
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++++|||++++.++..+..|+..+.... ..++|+++|+||+|+.. +.+..+.+..
T Consensus 70 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~ 145 (179)
T 1z0f_A 70 DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT----NPNTVIILIGNKADLEAQRDVTYEEAKQ 145 (179)
T ss_dssp ECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred ECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhc----CCCCcEEEEEECcccccccccCHHHHHH
Confidence 899999999999999999999999999999999999999998886432 35789999999999975 5677888889
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
++..++ .+++++||+++.|++++|.+|.+.+.+
T Consensus 146 ~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 146 FAEENG-LLFLEASAKTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp HHHHTT-CEEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred HHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 999988 569999999999999999999988754
No 31
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.87 E-value=1.2e-21 Score=128.69 Aligned_cols=108 Identities=26% Similarity=0.427 Sum_probs=96.2
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++++|||++++.++..+..|+..+.... ...++|+++|+||+|+.. +.+..+.+..
T Consensus 57 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 133 (167)
T 1c1y_A 57 DTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVK---DTEDVPMILVGNKCDLEDERVVGKEQGQN 133 (167)
T ss_dssp EECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHH---CCSCCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred ECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhh---CcCCCcEEEEEECccccccccCCHHHHHH
Confidence 899999999999999999999999999999999999999998886443 346899999999999976 5677888888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
++..++..+++++||++|.|++++|.+|.+.+
T Consensus 134 ~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 134 LARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp HHHHTTSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHccCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence 98888447799999999999999999999876
No 32
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=1.6e-21 Score=134.07 Aligned_cols=111 Identities=16% Similarity=0.256 Sum_probs=94.8
Q ss_pred CCCcchh-hhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHH
Q psy10891 1 MTEGQER-FTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIE 78 (142)
Q Consensus 1 Dt~G~e~-~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~ 78 (142)
||+|++. +..+.+.|++.+|++|+|||++++.||..+..|+..+... ....++|+|||+||+|+.. +.+..++..
T Consensus 93 Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~---~~~~~~piilVgNK~DL~~~r~v~~~e~~ 169 (211)
T 2g3y_A 93 DMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRA---RQTEDIPIILVGNKSDLVRCREVSVSEGR 169 (211)
T ss_dssp CCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTS---GGGTTSCEEEEEECTTCGGGCCSCHHHHH
T ss_pred ecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHH---hCCCCCcEEEEEEChHHhcCceEeHHHHH
Confidence 8999888 6667888899999999999999999999999998877521 1235799999999999975 667778888
Q ss_pred HHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 79 CFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 79 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
.++..++ .++++|||++|.||+++|.+|++.+..+.
T Consensus 170 ~~a~~~~-~~~~e~SAk~g~~v~elf~~l~~~i~~~~ 205 (211)
T 2g3y_A 170 ACAVVFD-CKFIETSAAVQHNVKELFEGIVRQVRLRR 205 (211)
T ss_dssp HHHHHHT-CEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred HHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 8888888 56999999999999999999999987653
No 33
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.87 E-value=8e-22 Score=134.01 Aligned_cols=111 Identities=28% Similarity=0.466 Sum_probs=98.9
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++|+|||++++.++..+..|+..+.... ..++|+++|+||+|+.. +.+...++..
T Consensus 80 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~~v~~~~~~~ 155 (200)
T 2o52_A 80 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLA----SPNIVVILCGNKKDLDPEREVTFLEASR 155 (200)
T ss_dssp CCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHT----CTTCEEEEEEECGGGGGGCCSCHHHHHH
T ss_pred cCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc----CCCCcEEEEEECCCcccccccCHHHHHH
Confidence 899999999999999999999999999999999999999998885432 25799999999999965 5677788888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 116 (142)
++...+ .++++|||+++.|++++|.+|.+.+.++..
T Consensus 156 ~~~~~~-~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~ 191 (200)
T 2o52_A 156 FAQENE-LMFLETSALTGENVEEAFLKCARTILNKID 191 (200)
T ss_dssp HHHHTT-CEEEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence 898888 569999999999999999999999987654
No 34
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.87 E-value=3.4e-22 Score=135.77 Aligned_cols=112 Identities=19% Similarity=0.352 Sum_probs=97.5
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++++|||++++.++..+..|+..+... ....++|+++|+||+|+.. +.+.......
T Consensus 78 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~~piilv~nK~Dl~~~~~v~~~~~~~ 154 (201)
T 3oes_A 78 DTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEG---HGKTRVPVVLVGNKADLSPEREVQAVEGKK 154 (201)
T ss_dssp EECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC--------CCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred ECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHh---cCCCCCCEEEEEECccCccccccCHHHHHH
Confidence 89999999999999999999999999999999999999999988632 2345799999999999976 6778888899
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 116 (142)
++..++ .+++++||+++.|++++|.+|...+.+...
T Consensus 155 ~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~i~~~~~ 190 (201)
T 3oes_A 155 LAESWG-ATFMESSARENQLTQGIFTKVIQEIARVEN 190 (201)
T ss_dssp HHHHHT-CEEEECCTTCHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHhC-CeEEEEeCCCCCCHHHHHHHHHHHHHhhhh
Confidence 999998 479999999999999999999999987654
No 35
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.87 E-value=1.7e-21 Score=130.80 Aligned_cols=112 Identities=29% Similarity=0.521 Sum_probs=99.7
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++|+|||++++.++..+..|+..+.... ...++|+++|+||+|+.. +.+..+.+..
T Consensus 76 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 152 (195)
T 3bc1_A 76 DTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHA---YSENPDIVLCGNKSDLEDQRAVKEEEARE 152 (195)
T ss_dssp EECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS---SSSSCCEEEEEECTTCGGGCCSCHHHHHH
T ss_pred eCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECcccccccccCHHHHHH
Confidence 899999999999999999999999999999999999999998886433 335799999999999976 5677888888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 116 (142)
++...++ +++++||+++.|++++|.+|...+.++..
T Consensus 153 ~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 188 (195)
T 3bc1_A 153 LAEKYGI-PYFETSAANGTNISHAIEMLLDLIMKRME 188 (195)
T ss_dssp HHHHHTC-CEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCC-CEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 9988884 69999999999999999999999987653
No 36
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.87 E-value=9e-22 Score=129.60 Aligned_cols=109 Identities=32% Similarity=0.508 Sum_probs=97.7
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|..++..+++++|++++|||++++.++..+..|+..+.... ..++|+++|+||+|+..+.+..+....+
T Consensus 58 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~ 133 (170)
T 1g16_A 58 DTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHA----NDEAQLLLVGNKSDMETRVVTADQGEAL 133 (170)
T ss_dssp CCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECTTCTTCCSCHHHHHHH
T ss_pred eCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc----CCCCcEEEEEECccCCcCccCHHHHHHH
Confidence 899999999999999999999999999999999999999998886432 3578999999999996566788888889
Q ss_pred HHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 81 YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
++.++ .+++++||+++.|++++|.+|...+.++
T Consensus 134 ~~~~~-~~~~~~Sa~~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 134 AKELG-IPFIESSAKNDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp HHHHT-CCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred HHHcC-CeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 99888 4699999999999999999999998765
No 37
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.87 E-value=5.4e-22 Score=134.00 Aligned_cols=110 Identities=29% Similarity=0.504 Sum_probs=96.7
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++|+|||++++.++..+..|+..+.... ..++|+++|+||+|+.. +.+..+.+..
T Consensus 81 Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~----~~~~piilV~NK~Dl~~~~~v~~~~~~~ 156 (192)
T 2il1_A 81 DTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYA----SEDAELLLVGNKLDCETDREITRQQGEK 156 (192)
T ss_dssp EECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECGGGGGGCCSCHHHHHH
T ss_pred eCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc----CCCCcEEEEEECcccccccccCHHHHHH
Confidence 899999999999999999999999999999999999999988885432 35799999999999976 6677888888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
++......+++++||+++.|++++|.+|.+.+.++
T Consensus 157 ~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~ 191 (192)
T 2il1_A 157 FAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191 (192)
T ss_dssp HHHTSTTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 88876446799999999999999999999988653
No 38
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.87 E-value=1.1e-21 Score=128.78 Aligned_cols=109 Identities=25% Similarity=0.421 Sum_probs=94.5
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++++|||++++.++..+..|+..+.... ...++|+++|+||+|+.. +.+..+++..
T Consensus 58 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 134 (168)
T 1u8z_A 58 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVK---EDENVPFLLVGNKSDLEDKRQVSVEEAKN 134 (168)
T ss_dssp ECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHH---CCTTSCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred ECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCcEEEEEECccccccCccCHHHHHH
Confidence 899999999999999999999999999999999999999998887544 335799999999999976 5677888888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
++..++ .+++++||+++.|++++|.++.+.+.+
T Consensus 135 ~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 135 RADQWN-VNYVETSAKTRANVDKVFFDLMREIRA 167 (168)
T ss_dssp HHHHHT-CEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred HHHHcC-CeEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 998888 469999999999999999999988753
No 39
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.87 E-value=1.1e-21 Score=133.11 Aligned_cols=110 Identities=28% Similarity=0.506 Sum_probs=98.4
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++|+|||++++.++..+..|+..+.... ..++|+++|+||+|+.. +.+..+.+..
T Consensus 63 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~ 138 (203)
T 1zbd_A 63 DTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS----WDNAQVLLVGNKCDMEDERVVSSERGRQ 138 (203)
T ss_dssp EECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHS----CSSCEEEEEEECTTCTTSCCSCHHHHHH
T ss_pred ECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc----CCCCCEEEEEECcccCcccccCHHHHHH
Confidence 899999999999999999999999999999999999999998886432 35789999999999976 5677888889
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
++..++ .+++++||+++.|++++|.+|...+.++.
T Consensus 139 ~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 173 (203)
T 1zbd_A 139 LADHLG-FEFFEASAKDNINVKQTFERLVDVICEKM 173 (203)
T ss_dssp HHHHHT-CEEEECBTTTTBSSHHHHHHHHHHHHHHH
T ss_pred HHHHCC-CeEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence 999988 47999999999999999999999988754
No 40
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.87 E-value=1.3e-21 Score=131.82 Aligned_cols=110 Identities=27% Similarity=0.474 Sum_probs=98.2
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++|+|||++++.++..+..|+..+.. ....++|+++|+||+|+.. +.+..+....
T Consensus 80 Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~----~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 155 (193)
T 2oil_A 80 DTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYD----HAEATIVVMLVGNKSDLSQAREVPTEEARM 155 (193)
T ss_dssp EESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHT----TSCTTCEEEEEEECGGGGGGCCSCHHHHHH
T ss_pred eCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHH----hcCCCCeEEEEEECCCcccccccCHHHHHH
Confidence 8999999999999999999999999999999999999999988853 2235789999999999976 5677888888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
++...+ .++++|||+++.|++++|.+|...+.++.
T Consensus 156 ~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 190 (193)
T 2oil_A 156 FAENNG-LLFLETSALDSTNVELAFETVLKEIFAKV 190 (193)
T ss_dssp HHHHTT-CEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence 998888 46999999999999999999999998764
No 41
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.87 E-value=1.9e-22 Score=137.96 Aligned_cols=111 Identities=23% Similarity=0.378 Sum_probs=94.8
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-C--------
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-R-------- 70 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~-------- 70 (142)
||||+++|..++..+++++|++|+|||++++.++..+. .|+..+.... +++|+++|+||+|+.. +
T Consensus 63 Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~ 137 (212)
T 2j0v_A 63 DTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-----PNVPIVLVGTKLDLRDDKGYLADHTN 137 (212)
T ss_dssp CCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-----TTCCEEEEEECHHHHTCHHHHHTCSS
T ss_pred ECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEeCHHhhhCccccccccC
Confidence 89999999999999999999999999999999999986 8998886543 5899999999999865 2
Q ss_pred CCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891 71 QVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 116 (142)
.+..+.+..++..++..++++|||+++.|++++|.+|+..+.++..
T Consensus 138 ~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 183 (212)
T 2j0v_A 138 VITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPR 183 (212)
T ss_dssp CCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC--
T ss_pred CCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHhhhhh
Confidence 2367788888998886579999999999999999999999986543
No 42
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.87 E-value=2e-21 Score=129.68 Aligned_cols=111 Identities=24% Similarity=0.423 Sum_probs=99.7
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++.+|++++|||++++.++..+..|+..+.... ...++|+++|+||+|+.. +.+..+++..
T Consensus 72 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 148 (187)
T 2a9k_A 72 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVK---EDENVPFLLVGNKSDLEDKRQVSVEEAKN 148 (187)
T ss_dssp ECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHH---CCTTCCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred ECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECccccccCccCHHHHHH
Confidence 899999999999999999999999999999999999999998887544 334799999999999876 5677888888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
++..++ .+++++||+++.|++++|.+|.+.+.+++
T Consensus 149 ~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 183 (187)
T 2a9k_A 149 RAEQWN-VNYVETSAKTRANVDKVFFDLMREIRARK 183 (187)
T ss_dssp HHHHTT-CEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHcC-CeEEEeCCCCCCCHHHHHHHHHHHHHHhh
Confidence 999988 46999999999999999999999998764
No 43
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.87 E-value=8.1e-22 Score=130.94 Aligned_cols=111 Identities=25% Similarity=0.302 Sum_probs=95.6
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCC-CCCCHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPH-RQVDINDIE 78 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~-~~~~~~~~~ 78 (142)
||||+++|..++..+++++|++++|||++++.++..+..|+..+..... ...+.| +++|+||+|+.. +.+..+...
T Consensus 62 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~~~~~iilv~nK~Dl~~~~~~~~~~~~ 139 (178)
T 2hxs_A 62 DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSE--ESETQPLVALVGNKIDLEHMRTIKPEKHL 139 (178)
T ss_dssp ECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHH--HHTCCCEEEEEEECGGGGGGCSSCHHHHH
T ss_pred ECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhc--ccCCCCeEEEEEEccccccccccCHHHHH
Confidence 8999999999999999999999999999999999999999988864320 012456 899999999976 567788888
Q ss_pred HHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 79 CFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 79 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
.++...+ .+++++||+++.|++++|.+|...+.+.
T Consensus 140 ~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 140 RFCQENG-FSSHFVSAKTGDSVFLCFQKVAAEILGI 174 (178)
T ss_dssp HHHHHHT-CEEEEECTTTCTTHHHHHHHHHHHHTTC
T ss_pred HHHHHcC-CcEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence 8998888 5699999999999999999999988654
No 44
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.87 E-value=1.2e-21 Score=131.67 Aligned_cols=110 Identities=31% Similarity=0.528 Sum_probs=98.3
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++++|||++++.++..+..|+..+.... ..++|+++|+||+|+.. +.+..+.+..
T Consensus 77 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~ 152 (189)
T 2gf9_A 77 DTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYS----WDNAQVILVGNKCDLEDERVVPAEDGRR 152 (189)
T ss_dssp ECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred eCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc----CCCCCEEEEEECcccccccCCCHHHHHH
Confidence 899999999999999999999999999999999999999998886432 35789999999999976 5677888889
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
++..++ .+++++||+++.|++++|.+|...+.++.
T Consensus 153 ~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~ 187 (189)
T 2gf9_A 153 LADDLG-FEFFEASAKENINVKQVFERLVDVICEKM 187 (189)
T ss_dssp HHHHHT-CEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred HHHHcC-CeEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 999988 46999999999999999999999987753
No 45
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.87 E-value=1.3e-21 Score=128.65 Aligned_cols=107 Identities=31% Similarity=0.556 Sum_probs=96.8
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++++|||++++.++..+..|+..+.... .+.|+++|+||+|+.. +.+..+.+..
T Consensus 60 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~ 134 (168)
T 1z2a_A 60 DTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-----GDIPTALVQNKIDLLDDSCIKNEEAEG 134 (168)
T ss_dssp CCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH-----CSCCEEEEEECGGGGGGCSSCHHHHHH
T ss_pred cCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECcccCcccccCHHHHHH
Confidence 899999999999999999999999999999999999999998886544 6899999999999876 5677888888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
++...+ .+++++||+++.|++++|.+|.+.+.+
T Consensus 135 ~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 135 LAKRLK-LRFYRTSVKEDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp HHHHHT-CEEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred HHHHcC-CeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 999888 479999999999999999999988763
No 46
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.87 E-value=4.2e-22 Score=133.55 Aligned_cols=108 Identities=19% Similarity=0.298 Sum_probs=95.5
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC----------
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNT-LKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---------- 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---------- 69 (142)
||||+++|..++..+++++|++++|||++++.|+..+ ..|+..+.... +++|+++|+||+|+..
T Consensus 61 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~ 135 (184)
T 1m7b_A 61 DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-----PNTKMLLVGCKSDLRTDVSTLVELSN 135 (184)
T ss_dssp EECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-----TTCEEEEEEECGGGGGCHHHHHHHHT
T ss_pred ECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHC-----CCCCEEEEEEcchhhcchhhHhhhhh
Confidence 8999999999999999999999999999999999998 78988886544 5899999999999863
Q ss_pred ---CCCCHHHHHHHHHHcCCceEEEeecc-CCCCHHHHHHHHHHHHHH
Q psy10891 70 ---RQVDINDIECFYKEHNFIGWTETSTK-EGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 70 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i~~l~~~l~~~~~~ 113 (142)
+.+..+++..++..++..++++|||+ ++.|++++|..+.+.+++
T Consensus 136 ~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 136 HRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp TTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred cccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 35778888889988886679999999 689999999999998864
No 47
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=1.1e-21 Score=130.55 Aligned_cols=109 Identities=38% Similarity=0.561 Sum_probs=89.1
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++++|||++++.++..+..|+..+.... ..++|+++|+||+|+.. +.+..+....
T Consensus 66 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~ 141 (180)
T 2g6b_A 66 DTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYA----QHDVALMLLGNKVDSAHERVVKREDGEK 141 (180)
T ss_dssp ECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHS----CTTCEEEEEEECCSTTSCCCSCHHHHHH
T ss_pred eCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC----CCCCcEEEEEECcccCcccccCHHHHHH
Confidence 899999999999999999999999999999999999999998886433 25789999999999976 6677888888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
++...++ +++++||+++.|++++|.+|...+.++
T Consensus 142 ~~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 142 LAKEYGL-PFMETSAKTGLNVDLAFTAIAKELKRR 175 (180)
T ss_dssp HHHHHTC-CEEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred HHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 9988884 699999999999999999999988654
No 48
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.87 E-value=6.3e-21 Score=128.73 Aligned_cols=108 Identities=27% Similarity=0.503 Sum_probs=96.6
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|..++..+++++|++++|||++++.++..+..|+..+.... +.|+++|+||+|...+.+..+++..+
T Consensus 99 Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~------~~piilv~NK~D~~~~~~~~~~~~~~ 172 (208)
T 3clv_A 99 DTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS------NYIIILVANKIDKNKFQVDILEVQKY 172 (208)
T ss_dssp ECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS------CCEEEEEEECTTCC-CCSCHHHHHHH
T ss_pred ECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC------CCcEEEEEECCCcccccCCHHHHHHH
Confidence 899999999999999999999999999999999999999998886543 49999999999943367788899999
Q ss_pred HHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 81 YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
+...+ .+++++||+++.|++++|.+|...+.++.
T Consensus 173 ~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 206 (208)
T 3clv_A 173 AQDNN-LLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206 (208)
T ss_dssp HHHTT-CEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHcC-CcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 99988 47999999999999999999999988763
No 49
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.87 E-value=1.2e-21 Score=134.57 Aligned_cols=110 Identities=23% Similarity=0.410 Sum_probs=82.6
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC---------
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR--------- 70 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--------- 70 (142)
||||+++|..++..++.++|++++|||++++.++..+. .|+..+.... .++|+++|+||+|+...
T Consensus 88 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~ 162 (214)
T 2j1l_A 88 DTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC-----KKVPIIVVGCKTDLRKDKSLVNKLRR 162 (214)
T ss_dssp EC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC-----SSCCEEEEEECGGGGSCHHHHHHHHH
T ss_pred ECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEEChhhhccchhhhhhcc
Confidence 89999999999999999999999999999999999986 7988886544 57999999999998652
Q ss_pred ----CCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 71 ----QVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 71 ----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
.+..+++..+++.++..++++|||++|.|++++|.+|+..+++..
T Consensus 163 ~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 163 NGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp TTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC-
T ss_pred cccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence 466778888999988657999999999999999999999998764
No 50
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.87 E-value=6.4e-22 Score=131.86 Aligned_cols=107 Identities=24% Similarity=0.363 Sum_probs=93.2
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CC-------
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQ------- 71 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~------- 71 (142)
||||+++|..++..+++++|++++|||++++.++..+. .|+..+.... .++|+++|+||+|+.. +.
T Consensus 62 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~ 136 (182)
T 3bwd_D 62 DTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-----PGVPIVLVGTKLDLRDDKQFFIDHPG 136 (182)
T ss_dssp CCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-----TTCCEEEEEECHHHHTCHHHHHHC--
T ss_pred ECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEechhhhcCccccccccc
Confidence 89999999999999999999999999999999999987 7988887543 4899999999999864 22
Q ss_pred ---CCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 72 ---VDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 72 ---~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
+..+....++..++..++++|||+++.|++++|..|.+.++
T Consensus 137 ~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 137 AVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46777888888888657999999999999999999998774
No 51
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.87 E-value=3.2e-21 Score=131.04 Aligned_cols=115 Identities=31% Similarity=0.546 Sum_probs=98.3
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|..++..+++++|++|+|||++++.++..+..|+..+..........++|+++|+||+|+..+.+..+.+..+
T Consensus 63 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 142 (207)
T 1vg8_A 63 DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAW 142 (207)
T ss_dssp EECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHH
T ss_pred eCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHH
Confidence 89999999999999999999999999999999999999999887654321122478999999999997666777888888
Q ss_pred HHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 81 YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
+......+++++||++|.|++++|.+|.+.+.+..
T Consensus 143 ~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 177 (207)
T 1vg8_A 143 CYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177 (207)
T ss_dssp HHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred HHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 87444467999999999999999999999998754
No 52
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.87 E-value=1.3e-21 Score=128.64 Aligned_cols=106 Identities=30% Similarity=0.556 Sum_probs=94.1
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++++|||++++.++..+..|+..+.... .+++|+++|+||+|+.. +.+..+....
T Consensus 61 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~~iilv~nK~Dl~~~~~~~~~~~~~ 136 (170)
T 1r2q_A 61 DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA----SPNIVIALSGNKADLANKRAVDFQEAQS 136 (170)
T ss_dssp EECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS----CTTCEEEEEEECGGGGGGCCSCHHHHHH
T ss_pred eCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc----CCCCcEEEEEECccCccccccCHHHHHH
Confidence 899999999999999999999999999999999999999998886432 35799999999999865 5677788888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
++...+ .+++++||+++.|++++|.+|.+.+
T Consensus 137 ~~~~~~-~~~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 137 YADDNS-LLFMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp HHHHTT-CEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred HHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 888888 5699999999999999999998765
No 53
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.86 E-value=1.5e-21 Score=133.87 Aligned_cols=112 Identities=34% Similarity=0.544 Sum_probs=98.3
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++|+|||++++.++..+..|+..+. ......++|+++|+||+|+.. +.+..+.+..
T Consensus 90 Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~---~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~ 166 (217)
T 2f7s_A 90 DTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQ---ANAYCENPDIVLIGNKADLPDQREVNERQARE 166 (217)
T ss_dssp EEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCC---CCCTTTCCEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred ECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHH---HhcCcCCCCEEEEEECCccccccccCHHHHHH
Confidence 899999999999999999999999999999999999999988774 211226799999999999976 5677888899
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 116 (142)
++..++ .++++|||+++.|++++|.+|...+.++..
T Consensus 167 ~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~ 202 (217)
T 2f7s_A 167 LADKYG-IPYFETSAATGQNVEKAVETLLDLIMKRME 202 (217)
T ss_dssp HHHHTT-CCEEEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred HHHHCC-CcEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 999988 469999999999999999999999987543
No 54
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.86 E-value=5.4e-21 Score=129.90 Aligned_cols=107 Identities=23% Similarity=0.380 Sum_probs=94.6
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC---------
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNT-LKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR--------- 70 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--------- 70 (142)
||||+++|..++..+++++|++++|||++++.++..+ ..|+..+.... +++|+++|+||+|+...
T Consensus 79 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~ 153 (201)
T 2gco_A 79 DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNKKDLRQDEHTRRELAK 153 (201)
T ss_dssp CCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-----TTCCEEEEEECGGGTTCHHHHHHHHT
T ss_pred ECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEecHHhhcCccchhhhcc
Confidence 8999999999999999999999999999999999998 68888876543 58999999999998652
Q ss_pred ----CCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 71 ----QVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 71 ----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
.+..++...++...+..++++|||+++.|++++|.+|.+.++
T Consensus 154 ~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l 199 (201)
T 2gco_A 154 MKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGL 199 (201)
T ss_dssp TTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 366778888898988657999999999999999999998875
No 55
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.86 E-value=4.8e-21 Score=130.70 Aligned_cols=110 Identities=31% Similarity=0.483 Sum_probs=98.1
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|..++..++.++|++++|||++++.++..+..|+..+.... ..++|+++|+||+|+..+.+..+....+
T Consensus 75 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~ 150 (213)
T 3cph_A 75 DTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHA----NDEAQLLLVGNKSDMETRVVTADQGEAL 150 (213)
T ss_dssp CCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHT----TTCSEEEEEEECTTCSSCCSCHHHHHHH
T ss_pred eCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc----CCCCCEEEEEECCCCcccccCHHHHHHH
Confidence 899999999999999999999999999999999999999998886433 2478999999999996566778888889
Q ss_pred HHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 81 YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
+..+++ +++++||+++.|++++|.+|...+.+..
T Consensus 151 ~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~ 184 (213)
T 3cph_A 151 AKELGI-PFIESSAKNDDNVNEIFFTLAKLIQEKI 184 (213)
T ss_dssp HHHHTC-CEEECBTTTTBSSHHHHHHHHHHHHHHH
T ss_pred HHHcCC-EEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 988884 6999999999999999999999988754
No 56
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.86 E-value=8.4e-22 Score=135.96 Aligned_cols=111 Identities=28% Similarity=0.525 Sum_probs=95.1
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++|+|||++++.++..+..|+..+.... ..++|+++|+||+|+.. +.+..+.+..
T Consensus 68 Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~----~~~~piilv~nK~Dl~~~~~v~~~~~~~ 143 (223)
T 3cpj_B 68 DTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENA----DDNVAVGLIGNKSDLAHLRAVPTEESKT 143 (223)
T ss_dssp CCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHC----C--CEEEEEECCGGGGGGCCSCHHHHHH
T ss_pred ECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC----CCCCeEEEEEECcccccccccCHHHHHH
Confidence 899999999999999999999999999999999999999998886432 35789999999999976 5677888888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 116 (142)
++...+ .+++++||+++.|++++|.+|...+.++..
T Consensus 144 ~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~ 179 (223)
T 3cpj_B 144 FAQENQ-LLFTETSALNSENVDKAFEELINTIYQKVS 179 (223)
T ss_dssp HHHHTT-CEEEECCCC-CCCHHHHHHHHHHHHTTCC-
T ss_pred HHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 998888 569999999999999999999999986543
No 57
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.86 E-value=4.7e-22 Score=131.06 Aligned_cols=108 Identities=29% Similarity=0.514 Sum_probs=89.4
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++++|||++++.++..+..|+..+.... ..++|+++|+||+|+.. +.+..+....
T Consensus 61 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~ 136 (170)
T 1z08_A 61 DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML----GNEICLCIVGNKIDLEKERHVSIQEAES 136 (170)
T ss_dssp ECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHH----GGGSEEEEEEECGGGGGGCCSCHHHHHH
T ss_pred ECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc----CCCCeEEEEEECcccccccccCHHHHHH
Confidence 899999999999999999999999999999999999999998875432 24789999999999976 5677888889
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
++...+ .+++++||+++.|++++|.+|.+.+.+
T Consensus 137 ~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 137 YAESVG-AKHYHTSAKQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp HHHHTT-CEEEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred HHHHcC-CeEEEecCCCCCCHHHHHHHHHHHHhh
Confidence 999988 569999999999999999999988753
No 58
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.86 E-value=2.7e-21 Score=127.28 Aligned_cols=106 Identities=25% Similarity=0.470 Sum_probs=95.1
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++++|||++++.++..+..|+..+... ..+.+|+++|+||+|+.. +.+..+....
T Consensus 61 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~----~~~~~~iilv~nK~Dl~~~~~v~~~~~~~ 136 (170)
T 1z0j_A 61 DTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQH----GPPSIVVAIAGNKCDLTDVREVMERDAKD 136 (170)
T ss_dssp EECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH----SCTTSEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred cCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHh----CCCCCcEEEEEECCccccccccCHHHHHH
Confidence 89999999999999999999999999999999999999999888643 236789999999999976 5677888888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
++...+ .+++++||+++.|++++|.+|.+.+
T Consensus 137 ~~~~~~-~~~~~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 137 YADSIH-AIFVETSAKNAININELFIEISRRI 167 (170)
T ss_dssp HHHHTT-CEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred HHHHcC-CEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 998888 5799999999999999999998765
No 59
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.86 E-value=3.6e-21 Score=129.37 Aligned_cols=108 Identities=32% Similarity=0.479 Sum_probs=93.5
Q ss_pred CCCcchhhh-hhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHH
Q psy10891 1 MTEGQERFT-WMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIE 78 (142)
Q Consensus 1 Dt~G~e~~~-~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~ 78 (142)
||||+++|. .++..+++++|++|+|||++++.|+..+..|+..+.... ...++|+++|+||+|+.. +.+..+...
T Consensus 75 Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~v~~~~~~ 151 (189)
T 1z06_A 75 DTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHL---LANDIPRILVGNKCDLRSAIQVPTDLAQ 151 (189)
T ss_dssp ECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCSCCCEEEEEECTTCGGGCCSCHHHHH
T ss_pred ECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECccccccceeCHHHHH
Confidence 899999999 899999999999999999999999999999998887543 346799999999999976 567788888
Q ss_pred HHHHHcCCceEEEeeccCC---CCHHHHHHHHHHHHH
Q psy10891 79 CFYKEHNFIGWTETSTKEG---LMVNDSMKFLLDVLM 112 (142)
Q Consensus 79 ~~~~~~~~~~~~~~Sa~~~---~~i~~l~~~l~~~~~ 112 (142)
.++..+++ +++++||+++ .|+.++|.+|+..+.
T Consensus 152 ~~~~~~~~-~~~~~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 152 KFADTHSM-PLFETSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp HHHHHTTC-CEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred HHHHHcCC-EEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence 89998884 6999999999 999999999988764
No 60
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.86 E-value=3.7e-21 Score=128.42 Aligned_cols=108 Identities=22% Similarity=0.344 Sum_probs=95.2
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC----------
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---------- 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---------- 69 (142)
||||+++|..++..+++++|++++|||++++.++..+. .|+..+.... +++|+++|+||+|+..
T Consensus 59 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~ 133 (186)
T 1mh1_A 59 DTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKLDLRDDKDTIEKLKE 133 (186)
T ss_dssp CCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-----TTSCEEEEEECHHHHTCHHHHHHHHH
T ss_pred ECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhC-----CCCCEEEEeEcccccccchhhhhhcc
Confidence 89999999999999999999999999999999999987 7888886543 4899999999999854
Q ss_pred ---CCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 70 ---RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 70 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
+.+..+....++..++..++++|||++|.|++++|..|.+.+++
T Consensus 134 ~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 134 KKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp TTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred cccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHhc
Confidence 24667788888998886579999999999999999999998853
No 61
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.86 E-value=3.7e-21 Score=132.00 Aligned_cols=112 Identities=26% Similarity=0.405 Sum_probs=97.0
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..++.++|++++|||++++.++..+..|+..+.... ..++|+++|+||+|+.. +.+..+....
T Consensus 67 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~ 142 (218)
T 4djt_A 67 DTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVV----GNEAPIVVCANKIDIKNRQKISKKLVME 142 (218)
T ss_dssp EECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH----CSSSCEEEEEECTTCC----CCHHHHHH
T ss_pred ecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc----CCCCCEEEEEECCCCccccccCHHHHHH
Confidence 899999999999999999999999999999999999999998886543 24589999999999976 5677888888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhCC
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGL 117 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~ 117 (142)
++...+ .++++|||++|.|++++|.+|.+.+.++...
T Consensus 143 ~~~~~~-~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~ 179 (218)
T 4djt_A 143 VLKGKN-YEYFEISAKTAHNFGLPFLHLARIFTGRPDL 179 (218)
T ss_dssp HTTTCC-CEEEEEBTTTTBTTTHHHHHHHHHHHCCTTC
T ss_pred HHHHcC-CcEEEEecCCCCCHHHHHHHHHHHHhccccc
Confidence 888877 5699999999999999999999999876543
No 62
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.86 E-value=1.1e-21 Score=134.06 Aligned_cols=108 Identities=19% Similarity=0.298 Sum_probs=95.6
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC----------
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNT-LKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---------- 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---------- 69 (142)
||||+++|..++..+++++|++|+|||++++.++..+ ..|+..+.... +++|+++|+||+|+..
T Consensus 82 Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~ 156 (205)
T 1gwn_A 82 DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-----PNTKMLLVGCKSDLRTDVSTLVELSN 156 (205)
T ss_dssp EECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-----TTCEEEEEEECGGGGGCHHHHHHHHT
T ss_pred eCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-----CCCCEEEEEechhhccchhhhhhhcc
Confidence 8999999999999999999999999999999999998 78988886544 5799999999999862
Q ss_pred ---CCCCHHHHHHHHHHcCCceEEEeecc-CCCCHHHHHHHHHHHHHH
Q psy10891 70 ---RQVDINDIECFYKEHNFIGWTETSTK-EGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 70 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i~~l~~~l~~~~~~ 113 (142)
+.+..+++..+++.++..++++|||+ ++.|++++|..|++.+++
T Consensus 157 ~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 157 HRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp TTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 34677888889988875679999999 688999999999998875
No 63
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.86 E-value=8.1e-21 Score=127.59 Aligned_cols=112 Identities=28% Similarity=0.449 Sum_probs=88.6
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|..++..+++.+|++++|||++++.++..+..|+..+.... ...++|+++|+||+|+..+.+..+.+..+
T Consensus 75 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~ 151 (190)
T 3con_A 75 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVK---DSDDVPMVLVGNKCDLPTRTVDTKQAHEL 151 (190)
T ss_dssp ECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHH---TCSCCCEEEEEECTTCSCCCSCHHHHHHH
T ss_pred ECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHh---CCCCCeEEEEEECCcCCcccCCHHHHHHH
Confidence 899999999999999999999999999999999999999998886543 33479999999999997666778888899
Q ss_pred HHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891 81 YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 116 (142)
++.+++ +++++||+++.|++++|.+|.+.+.+...
T Consensus 152 ~~~~~~-~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~ 186 (190)
T 3con_A 152 AKSYGI-PFIETSAKTRQGVEDAFYTLVREIRQYRM 186 (190)
T ss_dssp HHHHTC-CEEECCTTTCTTHHHHHHHHHHHHHHHC-
T ss_pred HHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 999884 69999999999999999999999987643
No 64
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.86 E-value=2.3e-21 Score=127.03 Aligned_cols=109 Identities=27% Similarity=0.410 Sum_probs=96.5
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++++|||++++.++..+..|+..+.... ...++|+++|+||+|+.. +.+..+....
T Consensus 57 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 133 (167)
T 1kao_A 57 DTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVK---RYEKVPVILVGNKVDLESEREVSSSEGRA 133 (167)
T ss_dssp ECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHT---TTSCCCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred ECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc---CCCCCCEEEEEECCcccccccCCHHHHHH
Confidence 899999999999999999999999999999999999999988886443 345899999999999865 6677888888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
++..++ .+++++||+++.|++++|.+|...+.+
T Consensus 134 ~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 134 LAEEWG-CPFMETSAKSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp HHHHHT-SCEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhC-CCEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 888888 469999999999999999999988753
No 65
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=1.1e-21 Score=132.38 Aligned_cols=109 Identities=28% Similarity=0.456 Sum_probs=96.1
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++++|||++++.++..+..|+..+.... ..++|+++|+||+|+.. +.+..+++..
T Consensus 78 Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~----~~~~piiiv~NK~Dl~~~~~v~~~~~~~ 153 (192)
T 2fg5_A 78 DTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHG----PENIVMAIAGNKCDLSDIREVPLKDAKE 153 (192)
T ss_dssp EECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHS----CTTCEEEEEEECGGGGGGCCSCHHHHHH
T ss_pred cCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC----CCCCcEEEEEECcccccccccCHHHHHH
Confidence 899999999999999999999999999999999999999998886432 35799999999999976 6677888999
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
++...+ .++++|||+++.|++++|.+|.+.+.+.
T Consensus 154 ~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 154 YAESIG-AIVVETSAKNAINIEELFQGISRQIPPL 187 (192)
T ss_dssp HHHTTT-CEEEECBTTTTBSHHHHHHHHHHTCC--
T ss_pred HHHHcC-CEEEEEeCCCCcCHHHHHHHHHHHHHhh
Confidence 999888 5699999999999999999999877543
No 66
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=5.4e-21 Score=129.30 Aligned_cols=111 Identities=26% Similarity=0.306 Sum_probs=98.3
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++ ..++..+++++|++++|||++++.++..+..|+..+.... ...++|+++|+||+|+.. +.+..+++..
T Consensus 82 Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~NK~Dl~~~~~v~~~~~~~ 157 (196)
T 2atv_A 82 DTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIK---KPKNVTLILVGNKADLDHSRQVSTEEGEK 157 (196)
T ss_dssp ECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHH---TTSCCCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred ECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhh---CCCCCcEEEEEECcccccccccCHHHHHH
Confidence 8999998 7889999999999999999999999999999998886443 346899999999999976 6678888888
Q ss_pred HHHHcCCceEEEeeccCCC-CHHHHHHHHHHHHHHHhC
Q psy10891 80 FYKEHNFIGWTETSTKEGL-MVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~-~i~~l~~~l~~~~~~~~~ 116 (142)
++..++ .++++|||+++. |++++|.+|+..+.++..
T Consensus 158 ~~~~~~-~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~~~ 194 (196)
T 2atv_A 158 LATELA-CAFYECSACTGEGNITEIFYELCREVRRRRM 194 (196)
T ss_dssp HHHHHT-SEEEECCTTTCTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHhC-CeEEEECCCcCCcCHHHHHHHHHHHHHhhcc
Confidence 998888 569999999999 999999999999987654
No 67
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.86 E-value=4.5e-21 Score=130.23 Aligned_cols=111 Identities=20% Similarity=0.349 Sum_probs=89.2
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCC--CCCCCEEEEEeCCCCCC--CCCCHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSD--GSPIPCMLLANKCDLPH--RQVDIND 76 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~p~ilv~nK~D~~~--~~~~~~~ 76 (142)
||||+++|..++..+++++|++|+|||++++.++..+..|+..+.... . ..++|+++|+||+|+.. +.+..+.
T Consensus 79 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~~~~piilv~nK~Dl~~~~~~v~~~~ 155 (208)
T 2yc2_C 79 DTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSAR---PDRERPLRAVLVANKTDLPPQRHQVRLDM 155 (208)
T ss_dssp ETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHC---SCTTSCCEEEEEEECC-------CCCHHH
T ss_pred ECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhh---cccccCCcEEEEEECcccchhhccCCHHH
Confidence 899999999999999999999999999999999999999999986543 1 14799999999999975 4677888
Q ss_pred HHHHHHHcCCceEEEeeccC-CCCHHHHHHHHHHHHHHHh
Q psy10891 77 IECFYKEHNFIGWTETSTKE-GLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 77 ~~~~~~~~~~~~~~~~Sa~~-~~~i~~l~~~l~~~~~~~~ 115 (142)
+..++..++ .++++|||++ +.|++++|.+|...+.+..
T Consensus 156 ~~~~~~~~~-~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~~ 194 (208)
T 2yc2_C 156 AQDWATTNT-LDFFDVSANPPGKDADAPFLSIATTFYRNY 194 (208)
T ss_dssp HHHHHHHTT-CEEEECCC-------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHcC-CEEEEeccCCCCcCHHHHHHHHHHHHHHHH
Confidence 999999998 5799999999 9999999999999888654
No 68
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.86 E-value=9.2e-21 Score=123.90 Aligned_cols=108 Identities=26% Similarity=0.436 Sum_probs=96.5
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|..++..++..+|++++|||++++.++..+..|+..+.... ...++|+++|+||+|+..+.+..+....+
T Consensus 57 D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~---~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~ 133 (166)
T 2ce2_X 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVK---DSDDVPMVLVGNKSDLAARTVESRQAQDL 133 (166)
T ss_dssp ECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHH---TCSCCCEEEEEECTTCSCCCSCHHHHHHH
T ss_pred ECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc---CCCCCcEEEEEEchhhhhcccCHHHHHHH
Confidence 899999999999999999999999999999999999999998887543 33479999999999997666778888889
Q ss_pred HHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 81 YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
++.++ .+++++||+++.|++++|.+|...+.
T Consensus 134 ~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 134 ARSYG-IPYIETSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp HHHHT-CCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred HHHcC-CeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 99888 46999999999999999999998875
No 69
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.86 E-value=1.8e-21 Score=132.01 Aligned_cols=108 Identities=27% Similarity=0.427 Sum_probs=93.6
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC------C-CCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP------H-RQVD 73 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~------~-~~~~ 73 (142)
||||+++|..++..+++++|++|+|||++++.++..+..|+..+.... ..++|+++|+||+|+. . +.+.
T Consensus 83 Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~NK~Dl~~~~~~~~~~~v~ 158 (199)
T 2p5s_A 83 DTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAA----HETVPIMLVGNKADIRDTAATEGQKCVP 158 (199)
T ss_dssp ECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-------CCEEEEEECGGGHHHHHHTTCCCCC
T ss_pred ECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhc----CCCCCEEEEEECcccccccccccccccC
Confidence 899999999999999999999999999999999999999998885432 2478999999999985 2 5677
Q ss_pred HHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 74 INDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
.+....++...+ .++++|||+++.|++++|.+|+..+.+
T Consensus 159 ~~~~~~~~~~~~-~~~~~~SA~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 159 GHFGEKLAMTYG-ALFCETSAKDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp HHHHHHHHHHHT-CEEEECCTTTCTTHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcC-CeEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 888888998888 479999999999999999999988753
No 70
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.86 E-value=2.8e-21 Score=130.02 Aligned_cols=109 Identities=18% Similarity=0.212 Sum_probs=91.4
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..+ ..+++++|++++|||++++.|+..+..|+..+..... ....++|+++|+||+|+.. +.+..+++..
T Consensus 75 Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~~piilv~nK~Dl~~~~~v~~~~~~~ 152 (187)
T 3c5c_A 75 DTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAK-ETQRSIPALLLGNKLDMAQYRQVTKAEGVA 152 (187)
T ss_dssp ECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHH-HHCCCCCEEEEEECGGGGGGCSSCHHHHHH
T ss_pred ECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhh-ccCCCCCEEEEEECcchhhcCccCHHHHHH
Confidence 89999999886 6799999999999999999999999999988864420 0114799999999999976 6678888999
Q ss_pred HHHHcCCceEEEeec-cCCCCHHHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETST-KEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa-~~~~~i~~l~~~l~~~~~ 112 (142)
+++.++ .++++||| +++.|++++|..|+..+.
T Consensus 153 ~~~~~~-~~~~e~Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 153 LAGRFG-CLFFEVSACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp HHHHHT-CEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred HHHHcC-CcEEEEeecCccccHHHHHHHHHHHHh
Confidence 999998 47999999 899999999999998875
No 71
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.86 E-value=1.2e-21 Score=133.54 Aligned_cols=106 Identities=22% Similarity=0.332 Sum_probs=94.3
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC---------
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR--------- 70 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~--------- 70 (142)
||||+++|..++..+++++|++++|||++++.++..+. .|+..+.... .++|+++|+||+|+...
T Consensus 84 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~ 158 (204)
T 4gzl_A 84 DTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKLDLRDDKDTIEKLKE 158 (204)
T ss_dssp EECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-----SSCCEEEEEECHHHHTCHHHHHHHHH
T ss_pred ECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEechhhccchhhhhhhhc
Confidence 89999999999999999999999999999999999986 8888886543 68999999999998641
Q ss_pred ----CCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 71 ----QVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 71 ----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
.+..+....+++..+..++++|||++|.|++++|.+|.+.+
T Consensus 159 ~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 159 KKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp TTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred cccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 26778888899999977899999999999999999998754
No 72
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.85 E-value=1.8e-20 Score=124.57 Aligned_cols=109 Identities=15% Similarity=0.183 Sum_probs=90.6
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC--C-CCCCHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP--H-RQVDINDI 77 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~--~-~~~~~~~~ 77 (142)
||||+++ ..|++++|++++|||++++.|+..+..|+..+.... .....++|+++|+||+|+. . +.+..+++
T Consensus 60 Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~ 133 (178)
T 2iwr_A 60 EEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLR-GEGRGGLALALVGTQDRISASSPRVVGDARA 133 (178)
T ss_dssp ECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHH-CSSSCCCEEEEEEECTTCBTTBCCCSCHHHH
T ss_pred ECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHH-hcCCCCCCEEEEEECccccccccCcCCHHHH
Confidence 8999987 458899999999999999999999999766654332 1223579999999999984 2 56788888
Q ss_pred HHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 78 ECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 78 ~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
..++...+..++++|||++|.|++++|.+++..+.+..
T Consensus 134 ~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 171 (178)
T 2iwr_A 134 RALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLR 171 (178)
T ss_dssp HHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHHHHHH
Confidence 88888875477999999999999999999999998754
No 73
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.85 E-value=5e-21 Score=130.02 Aligned_cols=106 Identities=10% Similarity=0.159 Sum_probs=85.2
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|..++..+++++|++++|||++++.++.....|+..+... ....++|+++|+||+|+.. .+..+++..+
T Consensus 75 Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~---~~~~~~piilv~NK~Dl~~-~~~~~~~~~~ 150 (198)
T 1f6b_A 75 DLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTD---ETIANVPILILGNKIDRPE-AISEERLREM 150 (198)
T ss_dssp EECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTC---GGGTTSCEEEEEECTTSTT-CCCHHHHHHH
T ss_pred ECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhC---cccCCCcEEEEEECCCccc-cCCHHHHHHH
Confidence 89999999999999999999999999999999999999999887522 1235799999999999965 5567777776
Q ss_pred HHHc----------------CCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891 81 YKEH----------------NFIGWTETSTKEGLMVNDSMKFLLDV 110 (142)
Q Consensus 81 ~~~~----------------~~~~~~~~Sa~~~~~i~~l~~~l~~~ 110 (142)
+... ...++++|||++|.|++++|++|.+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 151 FGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp HTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred hCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 6532 23569999999999999999998754
No 74
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.85 E-value=4.6e-21 Score=126.06 Aligned_cols=106 Identities=30% Similarity=0.463 Sum_probs=93.4
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC----CCCCHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH----RQVDIND 76 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~----~~~~~~~ 76 (142)
||||+++|..++..+++++|++++|||++++.++..+..|+..+.... ..++|+++|+||+|+.. +.+..+.
T Consensus 58 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~piilv~nK~Dl~~~~~~~~v~~~~ 133 (170)
T 1ek0_A 58 DTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQA----SKDIIIALVGNKIDXLQEGGERKVAREE 133 (170)
T ss_dssp EECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS----CTTCEEEEEEECGGGGGSSCCCCSCHHH
T ss_pred ECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhc----CCCCcEEEEEECCCccccccccCCCHHH
Confidence 899999999999999999999999999999999999999998886432 35789999999999864 4567788
Q ss_pred HHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 77 IECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 77 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
...++...+ .+++++||+++.|++++|.+|.+.+
T Consensus 134 ~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 134 GEKLAEEKG-LLFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp HHHHHHHHT-CEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred HHHHHHHcC-CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 888888888 4699999999999999999998754
No 75
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.85 E-value=2.6e-20 Score=125.98 Aligned_cols=111 Identities=16% Similarity=0.253 Sum_probs=92.0
Q ss_pred CCCcchh-hhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHH
Q psy10891 1 MTEGQER-FTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIE 78 (142)
Q Consensus 1 Dt~G~e~-~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~ 78 (142)
||+|++. +..++..|++.+|++++|||++++.||..+..|+..+.... ...++|+|+|+||+|+.. +.+..+...
T Consensus 62 Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~---~~~~~piilV~NK~Dl~~~r~v~~~~~~ 138 (192)
T 2cjw_A 62 DMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRAR---QTEDIPIILVGNKSDLVRXREVSVSEGR 138 (192)
T ss_dssp CCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHT---TTSCCCEEEEEECTTCGGGCCSCHHHHH
T ss_pred EeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhh---CCCCCeEEEEEechhhhccccccHHHHH
Confidence 7888877 56678889999999999999999999999999988775322 335799999999999865 667777777
Q ss_pred HHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 79 CFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 79 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
.++..++ .++++|||++|.||+++|.++++.+..+.
T Consensus 139 ~~a~~~~-~~~~e~SA~~g~~v~~lf~~l~~~~~~~~ 174 (192)
T 2cjw_A 139 AXAVVFD-XKFIETSAAVQHNVKELFEGIVRQVRLRR 174 (192)
T ss_dssp HHHHHTT-CEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-CceEEeccccCCCHHHHHHHHHHHHHhhc
Confidence 8888887 56999999999999999999999987654
No 76
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.85 E-value=2.7e-21 Score=128.27 Aligned_cols=107 Identities=38% Similarity=0.530 Sum_probs=94.8
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..++.++|++++|||++++.++..+..|+..+.... ..++|+++|+||+|+.. +.+..+....
T Consensus 69 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~ 144 (179)
T 2y8e_A 69 DTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTER----GSDVIIMLVGNKTDLSDKRQVSTEEGER 144 (179)
T ss_dssp EECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH----TTSSEEEEEEECGGGGGGCCSCHHHHHH
T ss_pred ECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc----CCCCcEEEEEECCcccccCcCCHHHHHH
Confidence 899999999999999999999999999999999999999998886432 25789999999999876 5677788888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
++...+ .+++++||+++.|++++|.+|...+.
T Consensus 145 ~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 145 KAKELN-VMFIETSAKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp HHHHHT-CEEEEEBTTTTBSHHHHHHHHHHTCC
T ss_pred HHHHcC-CeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 888888 56999999999999999999987663
No 77
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=1.2e-20 Score=128.70 Aligned_cols=109 Identities=24% Similarity=0.367 Sum_probs=95.5
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHH-HHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC----------
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNT-LKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---------- 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---------- 69 (142)
||||+++|..++..+++++|++++|||++++.++..+ ..|+..+.... +++|+++|+||+|+..
T Consensus 79 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~ 153 (207)
T 2fv8_A 79 DTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-----PNVPIILVANKKDLRSDEHVRTELAR 153 (207)
T ss_dssp ECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS-----TTCCEEEEEECGGGGGCHHHHHHHHH
T ss_pred ECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEEchhhhccccchhhhhh
Confidence 8999999999999999999999999999999999988 68888886543 5899999999999854
Q ss_pred ---CCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 70 ---RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 70 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
+.+..+....++...+..++++|||+++.|++++|.+|.+.++++
T Consensus 154 ~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 154 MKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp TTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHSC
T ss_pred cccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 235677788888888865799999999999999999999998754
No 78
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=7.3e-21 Score=128.45 Aligned_cols=111 Identities=28% Similarity=0.387 Sum_probs=95.7
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|..++..+++++|++++|||++++.++..+..|+..+.... ....++|+++|+||+|+..+.+..+....+
T Consensus 62 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 139 (199)
T 2gf0_A 62 DTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIK--GSVEDIPVMLVGNKCDETQREVDTREAQAV 139 (199)
T ss_dssp ECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHH--SCGGGSCEEEEEECTTCSSCSSCHHHHHHH
T ss_pred eCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHh--cCCCCCCEEEEEECccCCccccCHHHHHHH
Confidence 899999999999999999999999999999999999888887765432 112478999999999997766778888888
Q ss_pred HHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 81 YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
+..++ .+++++||+++.|++++|.+|...+.++
T Consensus 140 ~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 140 AQEWK-CAFMETSAKMNYNVKELFQELLTLETRR 172 (199)
T ss_dssp HHHHT-CEEEECBTTTTBSHHHHHHHHHHHCSSS
T ss_pred HHHhC-CeEEEEecCCCCCHHHHHHHHHHHHhhh
Confidence 88888 4699999999999999999999877554
No 79
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.84 E-value=1.5e-20 Score=126.84 Aligned_cols=114 Identities=17% Similarity=0.260 Sum_probs=89.1
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhccc----CCCCCCCEEEEEeCCCCCCCCCCHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTL----SDGSPIPCMLLANKCDLPHRQVDIND 76 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~~~~~p~ilv~nK~D~~~~~~~~~~ 76 (142)
||||+++|..++..+++++|++|+|||++++.||..+..|+..+...... ....++|+|+|+||+|+... ...+.
T Consensus 69 Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~ 147 (199)
T 4bas_A 69 DMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA-KTAAE 147 (199)
T ss_dssp EECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC-CCHHH
T ss_pred ECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC-CCHHH
Confidence 89999999999999999999999999999999999999998887532100 00137999999999999752 22222
Q ss_pred HHHHH------HHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891 77 IECFY------KEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 77 ~~~~~------~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 116 (142)
+.... +..+ .++++|||+++.|++++|.+|.+.+.++..
T Consensus 148 ~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~ 192 (199)
T 4bas_A 148 LVEILDLTTLMGDHP-FVIFASNGLKGTGVHEGFSWLQETASRQSG 192 (199)
T ss_dssp HHHHHTHHHHHTTSC-EEEEECBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred HHHHhcchhhccCCe-eEEEEeeCCCccCHHHHHHHHHHHHHHHhc
Confidence 22221 2244 579999999999999999999999988754
No 80
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.84 E-value=1.2e-20 Score=127.24 Aligned_cols=106 Identities=13% Similarity=0.154 Sum_probs=87.9
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|..++..+++++|++++|||++++.|+.....|+..+... ....++|+++|+||+|+.. .+..+++..+
T Consensus 73 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~piilv~NK~Dl~~-~~~~~~~~~~ 148 (190)
T 1m2o_B 73 DLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNI---AELKDVPFVILGNKIDAPN-AVSEAELRSA 148 (190)
T ss_dssp ECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTC---GGGTTCCEEEEEECTTSTT-CCCHHHHHHH
T ss_pred ECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcc---hhhcCCCEEEEEECCCCcC-CCCHHHHHHH
Confidence 89999999999999999999999999999999999999998887632 2336799999999999975 4556666655
Q ss_pred HHHc-----------CCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891 81 YKEH-----------NFIGWTETSTKEGLMVNDSMKFLLDV 110 (142)
Q Consensus 81 ~~~~-----------~~~~~~~~Sa~~~~~i~~l~~~l~~~ 110 (142)
+... ...++++|||++|.|++++|.+|.+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 149 LGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp TTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred hCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence 4421 22569999999999999999998753
No 81
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.84 E-value=7.9e-21 Score=130.75 Aligned_cols=108 Identities=31% Similarity=0.529 Sum_probs=94.5
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|..++..+++++|++++|||++++.++..+..|+..+.... .++|+++|+||+|+..+.+.. ....+
T Consensus 70 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~~~~-~~~~~ 143 (221)
T 3gj0_A 70 DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLCGNKVDIKDRKVKA-KSIVF 143 (221)
T ss_dssp EECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-----TTCCEEEEEECTTSSSCSSCG-GGCCH
T ss_pred eCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECCccccccccH-HHHHH
Confidence 899999999999999999999999999999999999999999997654 589999999999997643333 45557
Q ss_pred HHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 81 YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
+...+ .++++|||+++.|++++|.+|...+....
T Consensus 144 ~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~l~~~~ 177 (221)
T 3gj0_A 144 HRKKN-LQYYDISAKSNYNFEKPFLWLARKLIGDP 177 (221)
T ss_dssp HHHHT-CEEEECBGGGTBTTTHHHHHHHHHHHTCT
T ss_pred HHHcC-CEEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence 77777 56999999999999999999999998654
No 82
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.84 E-value=2.4e-20 Score=122.26 Aligned_cols=109 Identities=18% Similarity=0.238 Sum_probs=84.9
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|..++..+++++|++++|||++++.|+.....|+..+.. .....++|+++|+||+|+... .....+...
T Consensus 50 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~---~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~ 125 (164)
T 1r8s_A 50 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLA---EDELRDAVLLVFANKQDLPNA-MNAAEITDK 125 (164)
T ss_dssp ECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHT---CGGGTTCEEEEEEECTTSTTC-CCHHHHHHH
T ss_pred EcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHh---chhhcCCeEEEEEECcCCcCC-CCHHHHHHH
Confidence 8999999999999999999999999999999999999899888752 223357999999999999652 222332222
Q ss_pred HH-----HcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 81 YK-----EHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 81 ~~-----~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
.. ..+ .++++|||+++.|++++|.+|...+.++
T Consensus 126 ~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 163 (164)
T 1r8s_A 126 LGLHSLRHRN-WYIQATCATSGDGLYEGLDWLSNQLRNQ 163 (164)
T ss_dssp TTGGGCSSCC-EEEEECBTTTTBTHHHHHHHHHHHC---
T ss_pred hCcccccCcc-EEEEEcccCCCcCHHHHHHHHHHHHhhc
Confidence 11 122 4689999999999999999999887543
No 83
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=2.1e-20 Score=123.05 Aligned_cols=108 Identities=26% Similarity=0.385 Sum_probs=92.5
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..++.++|++++|||++++.++..+..|+..+.... ....++|+++|+||+|+.. +.+.......
T Consensus 57 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~--~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~ 134 (172)
T 2erx_A 57 DTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIK--GDVESIPIMLVGNKCDESPSREVQSSEAEA 134 (172)
T ss_dssp ECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHH--C---CCCEEEEEECGGGGGGCCSCHHHHHH
T ss_pred ECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCCCEEEEEEccccccccccCHHHHHH
Confidence 899999999999999999999999999999999999888887776432 1224799999999999876 5677778888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
++..++ .+++++||+++.|++++|.+|.+.+
T Consensus 135 ~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 135 LARTWK-CAFMETSAKLNHNVKELFQELLNLE 165 (172)
T ss_dssp HHHHHT-CEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred HHHHhC-CeEEEecCCCCcCHHHHHHHHHHHH
Confidence 888888 5699999999999999999998765
No 84
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.83 E-value=5e-22 Score=134.78 Aligned_cols=108 Identities=34% Similarity=0.579 Sum_probs=85.3
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..+++++|++++|||++++.++..+..|+..+.. ....++|+++|+||+|+.. +.+..+....
T Consensus 88 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~----~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~ 163 (199)
T 3l0i_B 88 DTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDR----YASENVNKLLVGNKCDLTTKKVVDYTTAKE 163 (199)
T ss_dssp CCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHS----CC-CCSEEEEC-CCSSCC--CCCCSCC-CH
T ss_pred ECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHH----hccCCCCEEEEEECccCCccccCCHHHHHH
Confidence 8999999999999999999999999999999999999999998852 2335799999999999976 5555566777
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
++..++ .+++++||+++.|++++|.+|...+.+
T Consensus 164 ~~~~~~-~~~~~vSA~~g~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 164 FADSLG-IPFLETSAKNATNVEQSFMTMAAEIKK 196 (199)
T ss_dssp HHHTTT-CCBCCCCC---HHHHHHHHHHTTTTTT
T ss_pred HHHHcC-CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 888888 569999999999999999999877643
No 85
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.82 E-value=5e-20 Score=123.31 Aligned_cols=109 Identities=19% Similarity=0.200 Sum_probs=84.8
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|..++..+++++|++++|||++++.++..+..|+..+.. .....++|+++|+||+|+... ...+++...
T Consensus 66 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~---~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~ 141 (181)
T 1fzq_A 66 DIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLE---EEKLSCVPVLIFANKQDLLTA-APASEIAEG 141 (181)
T ss_dssp ECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTT---CGGGTTCCEEEEEECTTSTTC-CCHHHHHHH
T ss_pred ECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHh---ChhhcCCCEEEEEECcCcccC-CCHHHHHHH
Confidence 8999999999999999999999999999999999998889887742 112357999999999999752 223333222
Q ss_pred HH-----HcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 81 YK-----EHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 81 ~~-----~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
.. ..+ .++++|||++|.|++++|.+|.+.+.++
T Consensus 142 ~~~~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 142 LNLHTIRDRV-WQIQSCSALTGEGVQDGMNWVCKNVNAK 179 (181)
T ss_dssp TTGGGCCSSC-EEEEECCTTTCTTHHHHHHHHHHTC---
T ss_pred hCchhccCCc-eEEEEccCCCCCCHHHHHHHHHHHHHhc
Confidence 11 122 4699999999999999999999877543
No 86
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=6.6e-20 Score=122.99 Aligned_cols=109 Identities=18% Similarity=0.213 Sum_probs=84.7
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|..++..+++++|++++|||++++.|+.....|+..+... ....++|+++|+||+|+.. ....+++...
T Consensus 66 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~piilv~NK~Dl~~-~~~~~~i~~~ 141 (187)
T 1zj6_A 66 DIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH---EDLRKAGLLIFANKQDVKE-CMTVAEISQF 141 (187)
T ss_dssp ECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTS---GGGTTCEEEEEEECTTSTT-CCCHHHHHHH
T ss_pred ECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhc---hhhCCCeEEEEEECCCCcC-CCCHHHHHHH
Confidence 89999999999999999999999999999999999999999888632 1235799999999999965 3344454444
Q ss_pred HHH-----cCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 81 YKE-----HNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 81 ~~~-----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
... .+ .++++|||++|.|++++|.+|++.+...
T Consensus 142 ~~~~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 142 LKLTSIKDHQ-WHIQACCALTGEGLCQGLEWMMSRLKIR 179 (187)
T ss_dssp HTGGGCCSSC-EEEEECBTTTTBTHHHHHHHHHHHHCC-
T ss_pred hChhhhcCCC-cEEEEccCCCCcCHHHHHHHHHHHHHHH
Confidence 322 23 4699999999999999999999987544
No 87
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.82 E-value=6.6e-20 Score=120.81 Aligned_cols=108 Identities=16% Similarity=0.190 Sum_probs=86.1
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|..++..+++++|++++|||++++.++.....|+..+.. .....++|+++|+||+|+... .....+...
T Consensus 57 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~---~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~ 132 (171)
T 1upt_A 57 DLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLE---EEELRKAILVVFANKQDMEQA-MTSSEMANS 132 (171)
T ss_dssp EECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHT---CGGGTTCEEEEEEECTTSTTC-CCHHHHHHH
T ss_pred ECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHh---chhhCCCEEEEEEECCCCcCC-CCHHHHHHH
Confidence 8999999999999999999999999999999999998888877752 212357999999999999652 222332222
Q ss_pred H-----HHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 81 Y-----KEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 81 ~-----~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
. ...+ .+++++||+++.|++++|.+|.+.+.+
T Consensus 133 ~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 133 LGLPALKDRK-WQIFKTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp HTGGGCTTSC-EEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred hCchhccCCc-eEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence 1 1223 469999999999999999999988754
No 88
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.82 E-value=1.8e-19 Score=121.12 Aligned_cols=109 Identities=18% Similarity=0.219 Sum_probs=88.2
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCC--CCCCEEEEEeCCCCCCCCCCHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDG--SPIPCMLLANKCDLPHRQVDINDIE 78 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~--~~~p~ilv~nK~D~~~~~~~~~~~~ 78 (142)
||||+++|..++..+++++|++++|||++++.++..+..|+..+.... .. .++|+++|+||+|+.. ....+.+.
T Consensus 73 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~~piilv~nK~Dl~~-~~~~~~~~ 148 (190)
T 2h57_A 73 DMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHP---DIKHRRIPILFFANKMDLRD-AVTSVKVS 148 (190)
T ss_dssp EECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHST---TTTTSCCCEEEEEECTTSTT-CCCHHHHH
T ss_pred ECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCh---hhccCCCeEEEEEeCcCccc-CCCHHHHH
Confidence 899999999999999999999999999999999999999988876321 22 5799999999999965 34455565
Q ss_pred HHHH--Hc--CCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 79 CFYK--EH--NFIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 79 ~~~~--~~--~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
.++. .. ...++++|||+++.|++++|.+|.+.+.+
T Consensus 149 ~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 149 QLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp HHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred HHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 5553 11 12569999999999999999999887643
No 89
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.82 E-value=9.8e-20 Score=121.88 Aligned_cols=109 Identities=19% Similarity=0.268 Sum_probs=87.7
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|..++..+++++|++++|||++++.|+..+..|+..+... ....++|+++|+||+|+... ...+.+...
T Consensus 68 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~piilv~nK~Dl~~~-~~~~~~~~~ 143 (186)
T 1ksh_A 68 DVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVE---ERLAGATLLIFANKQDLPGA-LSCNAIQEA 143 (186)
T ss_dssp EECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTC---GGGTTCEEEEEEECTTSTTC-CCHHHHHHH
T ss_pred ECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhC---hhcCCCcEEEEEeCccCCCC-CCHHHHHHH
Confidence 89999999999999999999999999999999999998998887532 22357999999999999652 233333332
Q ss_pred HH-----HcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 81 YK-----EHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 81 ~~-----~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
.. ..+ .+++++||+++.|++++|.+|.+.+.++
T Consensus 144 ~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 144 LELDSIRSHH-WRIQGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp TTGGGCCSSC-EEEEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred hChhhccCCc-eEEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 22 123 4699999999999999999999988643
No 90
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.82 E-value=9e-20 Score=131.98 Aligned_cols=108 Identities=20% Similarity=0.318 Sum_probs=95.8
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC----------
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---------- 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---------- 69 (142)
||||+++|..++..+++++|++++|||++++.|+..+. .|+..+.... .++|+++|+||+|+..
T Consensus 209 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~~~~~~~~~~ 283 (332)
T 2wkq_A 209 DTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-----PNTPIILVGTKLDLRDDKDTIEKLKE 283 (332)
T ss_dssp EECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-----TTSCEEEEEECHHHHTCHHHHHHHHH
T ss_pred eCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhC-----CCCcEEEEEEchhcccccchhhhccc
Confidence 89999999999999999999999999999999999886 7888886543 4899999999999853
Q ss_pred ---CCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 70 ---RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 70 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
+.+..+.+..++...+..++++|||++|.|++++|..|.+.+++
T Consensus 284 ~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 284 KKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp TTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred cccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence 35677888889999986579999999999999999999998864
No 91
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.81 E-value=4.4e-20 Score=124.96 Aligned_cols=104 Identities=12% Similarity=0.092 Sum_probs=84.5
Q ss_pred CCCcchhhhhhh---HhhhccCCEEEEEEeCCCh--hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC------
Q psy10891 1 MTEGQERFTWMT---RVYYKDAHGCIIMFDLTNQ--NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH------ 69 (142)
Q Consensus 1 Dt~G~e~~~~~~---~~~~~~ad~ii~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~------ 69 (142)
||||+++|..+. ..+++++|++|+|||++++ .++..+..|+..+.... .++|++||+||+|+..
T Consensus 75 Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~ 149 (196)
T 3llu_A 75 DFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN-----PDMNFEVFIHKVDGLSDDHKIE 149 (196)
T ss_dssp ECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-----TTCEEEEEEECGGGSCHHHHHH
T ss_pred ECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-----CCCcEEEEEeccccCchhhhhH
Confidence 899999998887 8999999999999999997 67777778877764333 6899999999999754
Q ss_pred --CCCCHHHHHHHHH----HcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 70 --RQVDINDIECFYK----EHNFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 70 --~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
+.+.......++. ..+ .++++|||++ .|++++|..+++.+
T Consensus 150 ~~~~v~~~~~~~~~~~~~~~~~-~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 150 TQRDIHQRANDDLADAGLEKLH-LSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp HHHHHHHHHHHHHHHTTCTTSC-EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred HHhHHHHHHHHHHHHhhhhcCC-cceEEEEech-hhHHHHHHHHHHHh
Confidence 2334444556666 455 5799999999 99999999998765
No 92
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.81 E-value=2.1e-19 Score=119.79 Aligned_cols=110 Identities=18% Similarity=0.220 Sum_probs=84.8
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|..++..+++++|++++|+|++++.++..+..|+..+.. .....++|+++|+||+|+.. ....+.+...
T Consensus 68 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~---~~~~~~~piilv~nK~Dl~~-~~~~~~i~~~ 143 (183)
T 1moz_A 68 DLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQ---EEELQDAALLVFANKQDQPG-ALSASEVSKE 143 (183)
T ss_dssp EEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTT---SSTTSSCEEEEEEECTTSTT-CCCHHHHHHH
T ss_pred ECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHc---ChhhCCCeEEEEEECCCCCC-CCCHHHHHHH
Confidence 8999999999999999999999999999999999999999888752 22346899999999999865 2334444433
Q ss_pred HHHc----CCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 81 YKEH----NFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 81 ~~~~----~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
.... ...++++|||+++.|++++|++|.+.+.++
T Consensus 144 ~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 144 LNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp TTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred hCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHHhc
Confidence 3221 113699999999999999999999988765
No 93
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.81 E-value=1.2e-19 Score=121.24 Aligned_cols=105 Identities=18% Similarity=0.233 Sum_probs=84.7
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|..++..+++++|++++|||++++.++..+..|+..+... ....++|+++|+||+|+.. ....+.+...
T Consensus 71 Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~---~~~~~~piilv~NK~Dl~~-~~~~~~i~~~ 146 (181)
T 2h17_A 71 DIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAH---EDLRKAGLLIFANKQDVKE-CMTVAEISQF 146 (181)
T ss_dssp EESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTC---GGGTTCEEEEEEECTTSTT-CCCHHHHHHH
T ss_pred ECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhC---hhhCCCeEEEEEECCCccc-CCCHHHHHHH
Confidence 89999999999999999999999999999999999998898877522 1236799999999999965 2334444443
Q ss_pred HH-----HcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891 81 YK-----EHNFIGWTETSTKEGLMVNDSMKFLLDV 110 (142)
Q Consensus 81 ~~-----~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 110 (142)
.. ..+ .++++|||+++.|++++|.+|.+.
T Consensus 147 ~~~~~~~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 147 LKLTSIKDHQ-WHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp TTGGGCCSSC-EEEEECBTTTTBTHHHHHHHHHTC
T ss_pred hCcccccCCc-eEEEEccCCCCcCHHHHHHHHHhh
Confidence 32 122 469999999999999999998754
No 94
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.81 E-value=1.2e-19 Score=122.06 Aligned_cols=109 Identities=22% Similarity=0.238 Sum_probs=85.1
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|..++..+++++|++++|||++++.++..+..|+..+... ....++|+++|+||+|+... ...+.+...
T Consensus 73 Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~---~~~~~~piilv~NK~Dl~~~-~~~~~~~~~ 148 (188)
T 1zd9_A 73 DIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDK---PQLQGIPVLVLGNKRDLPGA-LDEKELIEK 148 (188)
T ss_dssp EECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTC---GGGTTCCEEEEEECTTSTTC-CCHHHHHHH
T ss_pred ECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhC---cccCCCCEEEEEECCCCccC-CCHHHHHHH
Confidence 89999999999999999999999999999999999999998887522 12367999999999999652 223332222
Q ss_pred HHH----cCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 81 YKE----HNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 81 ~~~----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
... ....++++|||+++.|++++|.+|...+.+
T Consensus 149 ~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 149 MNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp TTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC-
T ss_pred hChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 111 112468999999999999999999887644
No 95
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.81 E-value=1.1e-19 Score=122.74 Aligned_cols=107 Identities=16% Similarity=0.249 Sum_probs=80.0
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|..++..+++++|++++|||++++.++..+..|+..+.. .....++|+++|+||+|+... ...+.+...
T Consensus 79 Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~---~~~~~~~piilv~NK~Dl~~~-~~~~~i~~~ 154 (192)
T 2b6h_A 79 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQ---EDELRDAVLLVFANKQDMPNA-MPVSELTDK 154 (192)
T ss_dssp ECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHT---CGGGTTCEEEEEEECTTSTTC-CCHHHHHHH
T ss_pred ECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhc---ccccCCCeEEEEEECCCCCCC-CCHHHHHHH
Confidence 8999999999999999999999999999999999999999888752 223357999999999999652 222332221
Q ss_pred HH-----HcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 81 YK-----EHNFIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 81 ~~-----~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
.. ..+ .++++|||+++.|++++|.+|++.+.
T Consensus 155 ~~~~~~~~~~-~~~~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 155 LGLQHLRSRT-WYVQATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp TTGGGCSSCC-EEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred hCcccccCCc-eEEEECcCCCcCCHHHHHHHHHHHHh
Confidence 11 112 46899999999999999999998763
No 96
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.68 E-value=2.7e-21 Score=131.52 Aligned_cols=107 Identities=22% Similarity=0.360 Sum_probs=90.8
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-C--------
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-R-------- 70 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~-------- 70 (142)
||||+++|..++..+++++|++++|||++++.++..+. .|+..+.... .++|+++|+||+|+.. .
T Consensus 84 Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~-----~~~piilv~NK~Dl~~~~~~~~~~~~ 158 (204)
T 3th5_A 84 DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKLDLRDDKDTIEKLKE 158 (204)
Confidence 89999999999999999999999999999999999886 7888775322 4799999999999865 2
Q ss_pred ----CCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 71 ----QVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 71 ----~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
.+..+....++...+..++++|||++|.|++++|..|.+.++
T Consensus 159 ~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~il 204 (204)
T 3th5_A 159 KKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 204 (204)
Confidence 345566677788887547999999999999999999987653
No 97
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.80 E-value=1.4e-19 Score=121.55 Aligned_cols=109 Identities=20% Similarity=0.207 Sum_probs=87.3
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|..++..+++++|++++|||++++.++.....|+..+. ......++|+++|+||+|+... .....+...
T Consensus 72 Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~---~~~~~~~~piilv~nK~Dl~~~-~~~~~~~~~ 147 (189)
T 2x77_A 72 DLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALL---DEDELRKSLLLIFANKQDLPDA-ASEAEIAEQ 147 (189)
T ss_dssp EECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHH---TCSTTTTCEEEEEEECTTSTTC-CCHHHHHHH
T ss_pred ECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHH---hhhhcCCCeEEEEEECCCCcCC-CCHHHHHHH
Confidence 899999999999999999999999999999999999888887775 2223468999999999999652 222332222
Q ss_pred H-----HHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 81 Y-----KEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 81 ~-----~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
. ...+ .++++|||+++.|++++|++|.+.+.++
T Consensus 148 ~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 148 LGVSSIMNRT-WTIVKSSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp TTGGGCCSSC-EEEEECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred hChhhccCCc-eEEEEccCCCccCHHHHHHHHHHHHHhc
Confidence 1 1122 3699999999999999999999998765
No 98
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.79 E-value=5.2e-20 Score=123.46 Aligned_cols=109 Identities=13% Similarity=0.222 Sum_probs=87.3
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCCh-hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCC---HH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQ-NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVD---IN 75 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~---~~ 75 (142)
||||+++|..+++.|+++++++++|||++++ .++..+..|+..+.... +++|+++|+||+|+.. +.+. .+
T Consensus 62 Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~ 136 (184)
T 2zej_A 62 DFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA-----SSSPVILVGTHLDVSDEKQRKACMSK 136 (184)
T ss_dssp EECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC-----TTCEEEEEEECGGGCCHHHHHHHHHH
T ss_pred ecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC-----CCCcEEEEEECCCcccchhhHHHHHH
Confidence 8999999999999999999999999999997 58999999998886433 5789999999999865 2211 22
Q ss_pred HHHHHHHHcCCc---eEEEeeccCCC-CHHHHHHHHHHHHHHH
Q psy10891 76 DIECFYKEHNFI---GWTETSTKEGL-MVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 76 ~~~~~~~~~~~~---~~~~~Sa~~~~-~i~~l~~~l~~~~~~~ 114 (142)
....++..+++. +++++||+++. ++.+++..|.+.+.+.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 137 ITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNF 179 (184)
T ss_dssp HHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhcc
Confidence 334455555643 38999999997 9999999998887654
No 99
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.78 E-value=1.3e-19 Score=133.08 Aligned_cols=113 Identities=14% Similarity=0.072 Sum_probs=92.3
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTN----------QNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH- 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~- 69 (142)
|||||++|+.+|..||++++++|||||+++ ..++.....|+..+.. .....++|+||++||+|+..
T Consensus 199 Dt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~---~~~~~~~piiLv~NK~DL~~~ 275 (353)
T 1cip_A 199 DVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICN---NKWFTDTSIILFLNKKDLFEE 275 (353)
T ss_dssp EECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHT---CGGGTTSEEEEEEECHHHHHH
T ss_pred eCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHc---CccccCCcEEEEEECcCchhh
Confidence 899999999999999999999999999998 5678888888888752 11235799999999999843
Q ss_pred C---------------CCCHHHHHHHHHH----------cCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891 70 R---------------QVDINDIECFYKE----------HNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 70 ~---------------~~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 116 (142)
+ .+..+++..++.. .....+++|||+++.||.++|.++...+++...
T Consensus 276 ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~l 347 (353)
T 1cip_A 276 KIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNL 347 (353)
T ss_dssp HHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC-
T ss_pred hccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHHH
Confidence 1 3567777777762 122568899999999999999999999987643
No 100
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.77 E-value=6.7e-18 Score=114.42 Aligned_cols=113 Identities=30% Similarity=0.549 Sum_probs=97.0
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||+++|..++..++.+++++++|+|+++..++..+..|+..+... ...+.|+++|+||+|+.. +.+....+..
T Consensus 60 Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~ 135 (199)
T 2f9l_A 60 DTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH----ADSNIVIMLVGNKSDLRHLRAVPTDEARA 135 (199)
T ss_dssp ECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECTTCGGGCCSCHHHHHH
T ss_pred ECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCeEEEEEECcccccccCcCHHHHHH
Confidence 79999999999999999999999999999999999988898877532 224689999999999976 5667778888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhCCC
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQ 118 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~~ 118 (142)
++...++ .++++||+++.+++++|..|...+.+.....
T Consensus 136 l~~~~~~-~~~d~Sal~~~~i~~l~~~l~~~~~~~~~~~ 173 (199)
T 2f9l_A 136 FAEKNNL-SFIETSALDSTNVEEAFKNILTEIYRIVSQK 173 (199)
T ss_dssp HHHHTTC-EEEECCTTTCTTHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHcCC-eEEEEeCCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 8888884 5999999999999999999999998765433
No 101
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.77 E-value=7.7e-19 Score=127.95 Aligned_cols=109 Identities=17% Similarity=0.222 Sum_probs=80.9
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|..++..+++++|++|+|||++++.+|..+..|+..+. ......++|+|||+||+|+... ...+.+...
T Consensus 215 Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~---~~~~~~~~piilV~NK~Dl~~~-~~~~~i~~~ 290 (329)
T 3o47_A 215 DVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRML---AEDELRDAVLLVFANKQDLPNA-MNAAEITDK 290 (329)
T ss_dssp ECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHH---TCGGGTTCEEEEEEECTTSTTC-CCHHHHHHH
T ss_pred ECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHH---hhhccCCCeEEEEEECccCCcc-cCHHHHHHH
Confidence 899999999999999999999999999999999999888877765 2223458999999999999752 223333222
Q ss_pred HHHc----CCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 81 YKEH----NFIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 81 ~~~~----~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
.... ...++++|||++|.||+++|..|++.+.+
T Consensus 291 ~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 291 LGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp HTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred hchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHHh
Confidence 2111 11468999999999999999999988754
No 102
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.76 E-value=9.9e-20 Score=131.94 Aligned_cols=106 Identities=13% Similarity=0.089 Sum_probs=78.5
Q ss_pred CCCcchhhhh---hhHhhhccCCEEEEEEeCCCh--hhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC-----
Q psy10891 1 MTEGQERFTW---MTRVYYKDAHGCIIMFDLTNQ--NSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR----- 70 (142)
Q Consensus 1 Dt~G~e~~~~---~~~~~~~~ad~ii~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~----- 70 (142)
||||||+|.. +++.||++++++|+|||++++ .++.....|+..+.... +++|+++++||+|+...
T Consensus 52 DTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~-----~~ipillvgNK~DL~~~~~R~~ 126 (331)
T 3r7w_B 52 ELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVN-----PSINIEVLIHKVDGLSEDFKVD 126 (331)
T ss_dssp ECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHC-----TTCEEEEECCCCCSSCSHHHHH
T ss_pred ECCCchhccchhhhhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcC-----CCCcEEEEEECcccCchhhhhh
Confidence 8999999975 579999999999999999997 23333333455443322 68999999999999651
Q ss_pred ---CCCHHHHHHHHHH----cCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 71 ---QVDINDIECFYKE----HNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 71 ---~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
.+..+....+++. ++ ++|++|||++ .+|.+.|..+++.++.
T Consensus 127 ~~R~V~~~~~~~la~~~~~~~~-i~f~eTSAkd-~nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 127 AQRDIMQRTGEELLELGLDGVQ-VSFYLTSIFD-HSIYEAFSRIVQKLIP 174 (331)
T ss_dssp HHHHHHHHHHHTTSSSSCSCCC-EEEECCCSSS-SHHHHHHHHHHTTSST
T ss_pred HHHHhhHHHHHHHHhhcccccC-ceEEEeccCC-CcHHHHHHHHHHHHHh
Confidence 2344445555554 44 5699999998 5899999999876653
No 103
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.76 E-value=6.1e-19 Score=129.48 Aligned_cols=113 Identities=18% Similarity=0.145 Sum_probs=88.6
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCC----------ChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLT----------NQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH- 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~- 69 (142)
|||||++|+.+|..||++++++|||||++ +..++.....|+..+... ....++|+|||+||+|+..
T Consensus 189 DtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~---~~~~~~piiLvgNK~DL~~~ 265 (354)
T 2xtz_A 189 DVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQ---PCFEKTSFMLFLNKFDIFEK 265 (354)
T ss_dssp EECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTC---GGGSSCEEEEEEECHHHHHH
T ss_pred ECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhc---cccCCCeEEEEEECcchhhh
Confidence 89999999999999999999999999998 778999988998888521 1235799999999999843
Q ss_pred C--CCC-------------------HHHHHHHHHH---------------cCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 70 R--QVD-------------------INDIECFYKE---------------HNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 70 ~--~~~-------------------~~~~~~~~~~---------------~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
+ .+. .+....++.. .....+++|||+++.||.++|..+...+++
T Consensus 266 k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~~ 345 (354)
T 2xtz_A 266 KVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRR 345 (354)
T ss_dssp HTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred hcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHHHHH
Confidence 1 111 3445555332 122346899999999999999999999987
Q ss_pred HhC
Q psy10891 114 QEG 116 (142)
Q Consensus 114 ~~~ 116 (142)
...
T Consensus 346 ~~l 348 (354)
T 2xtz_A 346 RNL 348 (354)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
No 104
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.76 E-value=7.2e-19 Score=123.91 Aligned_cols=105 Identities=17% Similarity=0.314 Sum_probs=84.2
Q ss_pred CCcchhhhhhhHhhhc---------------------cCCEEEEEEeCCCh--hhHHHHHHHHHHHHHhcccCCCCCCCE
Q psy10891 2 TEGQERFTWMTRVYYK---------------------DAHGCIIMFDLTNQ--NSFKNTLKWKKDVDLKCTLSDGSPIPC 58 (142)
Q Consensus 2 t~G~e~~~~~~~~~~~---------------------~ad~ii~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~p~ 58 (142)
++|+++|..++..++. ++|++|+|||++++ .||..+..|+..+.... ...++|+
T Consensus 125 ~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~---~~~~~pi 201 (255)
T 3c5h_A 125 RAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQL---AKTKKPI 201 (255)
T ss_dssp HHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC----CHHHHHHHHHHHHHHH---HHTTCCE
T ss_pred cchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCchhhHHHHHHHHHHHHHHh---ccCCCCE
Confidence 5688888888888888 89999999999998 89999999998886431 1257999
Q ss_pred EEEEeCCCCCC-CCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 59 MLLANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 59 ilv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
+||+||+|+.. +.+ +....++......++++|||+++.|++++|.+|+..+
T Consensus 202 ilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 202 VVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp EEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 99999999865 322 4666677664235699999999999999999998876
No 105
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.74 E-value=7.2e-18 Score=128.64 Aligned_cols=111 Identities=15% Similarity=0.174 Sum_probs=86.1
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|..++..+++++|++|+|||++++.+|..+..|+..+.. .....++|+|||+||+|+.. ......+...
T Consensus 372 Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~---~~~~~~~p~ilv~NK~Dl~~-~~~~~~~~~~ 447 (497)
T 3lvq_E 372 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIIN---DREMRDAIILIFANKQDLPD-AMKPHEIQEK 447 (497)
T ss_dssp EECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHT---SGGGTTCEEEEEEECCSSSS-CCCHHHHHHH
T ss_pred ECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhh---hhhcCCCcEEEEEECCCCCc-CCCHHHHHHH
Confidence 8999999999999999999999999999999999999999888752 22335899999999999965 2233333222
Q ss_pred HHHc----CCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 81 YKEH----NFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 81 ~~~~----~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
.... ...++++|||++|.|++++|++|.+.+.+..
T Consensus 448 ~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~~~~~ 486 (497)
T 3lvq_E 448 LGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNYKSKL 486 (497)
T ss_dssp TTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHCC---
T ss_pred hchhhhhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 1110 1135999999999999999999998875543
No 106
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.74 E-value=1.2e-17 Score=114.11 Aligned_cols=108 Identities=16% Similarity=0.186 Sum_probs=73.6
Q ss_pred CCCcchhhhh-hhHhhhccCCEEEEEEeCCChh-hHHHHHHH-HHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHH
Q psy10891 1 MTEGQERFTW-MTRVYYKDAHGCIIMFDLTNQN-SFKNTLKW-KKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDI 77 (142)
Q Consensus 1 Dt~G~e~~~~-~~~~~~~~ad~ii~v~d~~~~~-s~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~ 77 (142)
||||+++|.. ++..|++++|++++|||+++.. ++.....| ...+... .....++|+++|+||+|+..........
T Consensus 60 Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~piilv~nK~Dl~~~~~~~~~~ 137 (214)
T 2fh5_B 60 DLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDS--MALKNSPSLLIACNKQDIAMAKSAKLIQ 137 (214)
T ss_dssp ECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHH--HTSTTCCEEEEEEECTTSTTCCCHHHHH
T ss_pred ECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhh--hhcccCCCEEEEEECCCCCCcccHHHHH
Confidence 8999999998 8999999999999999999854 45554444 4433211 0123578999999999997522111111
Q ss_pred HHHHHH------------------------cC-------------CceEEEeeccCC------CCHHHHHHHHHHH
Q psy10891 78 ECFYKE------------------------HN-------------FIGWTETSTKEG------LMVNDSMKFLLDV 110 (142)
Q Consensus 78 ~~~~~~------------------------~~-------------~~~~~~~Sa~~~------~~i~~l~~~l~~~ 110 (142)
..+... .+ ..+|++|||++| .||+++|.+|.+.
T Consensus 138 ~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 138 QQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp HHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 111110 11 356999999999 9999999999875
No 107
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.74 E-value=2.2e-18 Score=128.09 Aligned_cols=112 Identities=15% Similarity=0.110 Sum_probs=88.2
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTN----------QNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH- 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~- 69 (142)
|||||++|+.+|..||++++++|||||+++ ..+|.....|+..+. +.....++|+|||+||+|+..
T Consensus 223 DtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~---~~~~~~~~piiLvgNK~DL~~~ 299 (402)
T 1azs_C 223 DVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIW---NNRWLRTISVILFLNKQDLLAE 299 (402)
T ss_dssp EECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHH---TCTTCSSCCEEEEEECHHHHHH
T ss_pred ccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHH---hcccCCCCeEEEEEEChhhhhh
Confidence 899999999999999999999999999999 889999999998886 222346899999999999843
Q ss_pred CC---C---------------------------CHHHHHHHH-----HHc-------CCceEEEeeccCCCCHHHHHHHH
Q psy10891 70 RQ---V---------------------------DINDIECFY-----KEH-------NFIGWTETSTKEGLMVNDSMKFL 107 (142)
Q Consensus 70 ~~---~---------------------------~~~~~~~~~-----~~~-------~~~~~~~~Sa~~~~~i~~l~~~l 107 (142)
+. + ..+....++ ... ....+++|||+++.||.++|..+
T Consensus 300 ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v 379 (402)
T 1azs_C 300 KVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDC 379 (402)
T ss_dssp HHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHH
T ss_pred hhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHH
Confidence 11 1 023344442 221 12447799999999999999999
Q ss_pred HHHHHHHh
Q psy10891 108 LDVLMRQE 115 (142)
Q Consensus 108 ~~~~~~~~ 115 (142)
...+++..
T Consensus 380 ~~~I~~~~ 387 (402)
T 1azs_C 380 RDIIQRMH 387 (402)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98888654
No 108
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.73 E-value=1.4e-18 Score=128.03 Aligned_cols=112 Identities=13% Similarity=0.092 Sum_probs=83.9
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCC----------hhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTN----------QNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH- 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~- 69 (142)
|||||++|+.+|..|+++++++|||||+++ ..++.....|+..+.. .....++|+||++||+|+..
T Consensus 207 Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~---~~~~~~~piILv~NK~DL~~~ 283 (362)
T 1zcb_A 207 DVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVN---NRVFSNVSIILFLNKTDLLEE 283 (362)
T ss_dssp EECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHT---CGGGTTSEEEEEEECHHHHHH
T ss_pred eccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhc---chhhCCCCEEEEEEChhhhhh
Confidence 899999999999999999999999999999 7789988889888752 21235799999999999853
Q ss_pred C----------------CCCHHHHHHHHH-----------HcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891 70 R----------------QVDINDIECFYK-----------EHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 70 ~----------------~~~~~~~~~~~~-----------~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 116 (142)
+ .+..+.+..++. ..+ ..+++|||+++.||.++|..+...+++...
T Consensus 284 ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~-~~~~~tSA~d~~nV~~vF~~v~~~i~~~~l 356 (362)
T 1zcb_A 284 KVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRP-LYHHFTTAINTENIRLVFRDVKDTILHDNL 356 (362)
T ss_dssp HTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--C-CEEEECCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCc-eEEEEEecCCchhHHHHHHHHHHHHHHHHH
Confidence 1 255666666652 223 458899999999999999999999987653
No 109
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.73 E-value=2.4e-18 Score=124.96 Aligned_cols=112 Identities=15% Similarity=0.099 Sum_probs=89.5
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCC----------ChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLT----------NQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH- 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~- 69 (142)
||+||++|+.+|..||++++++|||||++ +..++.....|+..+. +.....++|++|++||+|+..
T Consensus 173 DtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~---~~~~~~~~~iiL~~NK~DL~~~ 249 (327)
T 3ohm_A 173 DVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTII---TYPWFQNSSVILFLNKKDLLEE 249 (327)
T ss_dssp EECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHH---TSGGGTTCEEEEEEECHHHHHH
T ss_pred EcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHh---hhhccCCceEEEEEECchhhhh
Confidence 89999999999999999999999999654 6678887778887775 222336799999999999854
Q ss_pred C----------------CCCHHHHHHHHH----------HcCCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891 70 R----------------QVDINDIECFYK----------EHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 70 ~----------------~~~~~~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 116 (142)
+ .++.+....+.. ..+ ..+++|||+++.||..+|..+...+++...
T Consensus 250 ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~-i~~~~TsA~d~~nV~~vF~~v~~~Il~~~l 321 (327)
T 3ohm_A 250 KIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKI-IYSHFTCATDTENIRFVFAAVKDTILQLNL 321 (327)
T ss_dssp HTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSC-EEEEECCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCC-cEEEEEEeecCHHHHHHHHHHHHHHHHHhH
Confidence 2 356667666632 334 457899999999999999999999998653
No 110
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.73 E-value=2e-17 Score=109.53 Aligned_cols=106 Identities=18% Similarity=0.139 Sum_probs=78.1
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|..++..++..+|++++|+|++++...... .++..+. ..++|+++|+||+|+.. ...+.....
T Consensus 61 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~-~~l~~~~-------~~~~p~ilv~nK~Dl~~--~~~~~~~~~ 130 (178)
T 2lkc_A 61 DTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTV-EAINHAK-------AANVPIIVAINKMDKPE--ANPDRVMQE 130 (178)
T ss_dssp CCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHH-HHHHHHG-------GGSCCEEEEEETTTSSC--SCHHHHHHH
T ss_pred ECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHH-------hCCCCEEEEEECccCCc--CCHHHHHHH
Confidence 8999999999999999999999999999884322222 1222221 14789999999999964 233344333
Q ss_pred HHHcCC--------ceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891 81 YKEHNF--------IGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 81 ~~~~~~--------~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 116 (142)
....+. .++++|||+++.|++++|.+|...+...+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~ 174 (178)
T 2lkc_A 131 LMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEMEEL 174 (178)
T ss_dssp HTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHHTTT
T ss_pred HHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhhhcc
Confidence 333221 479999999999999999999998876544
No 111
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.72 E-value=1e-17 Score=121.00 Aligned_cols=108 Identities=18% Similarity=0.172 Sum_probs=87.1
Q ss_pred CCCcchhh-----hhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC---CC-
Q psy10891 1 MTEGQERF-----TWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---RQ- 71 (142)
Q Consensus 1 Dt~G~e~~-----~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---~~- 71 (142)
||||+++| ..++..+++++|++|+|||++++.|+..+..|...+..... ..+++|+++|+||+|+.. +.
T Consensus 58 Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~--~~~~~piilv~NK~Dl~~~~~r~~ 135 (307)
T 3r7w_A 58 DCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRK--YSPDAKIFVLLHKMDLVQLDKREE 135 (307)
T ss_dssp EECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHH--HCTTCEEEEEEECGGGSCHHHHHH
T ss_pred ECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHH--hCCCCeEEEEEecccccchhhhhH
Confidence 89999999 78899999999999999999999999988777544432111 126899999999999865 22
Q ss_pred ---CCHHHHHHHHHHcCC--ceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 72 ---VDINDIECFYKEHNF--IGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 72 ---~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
+..+++..++..+|+ .+++++||++ .++.++|..++..+
T Consensus 136 ~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 136 LFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp HHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHH
Confidence 455777888888874 6799999999 89999998887644
No 112
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.69 E-value=2.1e-16 Score=109.22 Aligned_cols=109 Identities=17% Similarity=0.125 Sum_probs=80.3
Q ss_pred CCCcc------hh----hhhhhHhhhccCCEEEEEEeCCChhhHHH--HHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC
Q psy10891 1 MTEGQ------ER----FTWMTRVYYKDAHGCIIMFDLTNQNSFKN--TLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP 68 (142)
Q Consensus 1 Dt~G~------e~----~~~~~~~~~~~ad~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 68 (142)
||||+ ++ +..+ ..++..+|++|+|||++++.++.. ...|+..+... ..++|+++|+||+|+.
T Consensus 82 DtpG~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-----~~~~piilv~nK~Dl~ 155 (228)
T 2qu8_A 82 DTPGLLDRAFENRNTIEMTTI-TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-----FSNKSIVIGFNKIDKC 155 (228)
T ss_dssp ECTTTTTSCGGGCCHHHHHHH-HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-----C-CCCEEEEEECGGGC
T ss_pred ECCCCcCcccchhhhHHHHHH-HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh-----hcCCcEEEEEeCcccC
Confidence 89999 55 3333 446788999999999999877642 33566666421 2479999999999997
Q ss_pred C-CCCCHH---HHHHHHHHcC-CceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 69 H-RQVDIN---DIECFYKEHN-FIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 69 ~-~~~~~~---~~~~~~~~~~-~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
. +.+... .+..++...+ ..++++|||++|.|++++|.+|...+.+..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 156 NMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQ 207 (228)
T ss_dssp C--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence 6 444443 4555666654 246999999999999999999999998654
No 113
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.69 E-value=2.1e-17 Score=110.58 Aligned_cols=111 Identities=17% Similarity=0.180 Sum_probs=83.7
Q ss_pred CCCc-----------chhhhhhhHhhhcc-CCEEEEEEeCCChhhHHHH-HHHHHH--------HHHhcccCCCCCCCEE
Q psy10891 1 MTEG-----------QERFTWMTRVYYKD-AHGCIIMFDLTNQNSFKNT-LKWKKD--------VDLKCTLSDGSPIPCM 59 (142)
Q Consensus 1 Dt~G-----------~e~~~~~~~~~~~~-ad~ii~v~d~~~~~s~~~~-~~~~~~--------~~~~~~~~~~~~~p~i 59 (142)
|||| +++|..++..|+++ ++++++|+++.+..++..+ ..|... +.... ...++|++
T Consensus 50 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~pii 126 (190)
T 2cxx_A 50 DMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFL---RELDIPTI 126 (190)
T ss_dssp ECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHH---HHTTCCEE
T ss_pred ECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHH---HhcCCceE
Confidence 7899 89999999999887 7777777777777777765 566542 21111 12579999
Q ss_pred EEEeCCCCCCCCCCHHHHHHHHHHcCCc------eEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891 60 LLANKCDLPHRQVDINDIECFYKEHNFI------GWTETSTKEGLMVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 60 lv~nK~D~~~~~~~~~~~~~~~~~~~~~------~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 116 (142)
+|+||+|+.... .+....++..++.. ++++|||++|.|++++|.+|.+.+.+...
T Consensus 127 lv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 127 VAVNKLDKIKNV--QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp EEEECGGGCSCH--HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred EEeehHhccCcH--HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 999999986522 56677888888742 37999999999999999999999877543
No 114
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.69 E-value=4.8e-17 Score=107.15 Aligned_cols=99 Identities=17% Similarity=0.136 Sum_probs=77.4
Q ss_pred CCCcchhhh------hhhHhhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CC
Q psy10891 1 MTEGQERFT------WMTRVYYK--DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQ 71 (142)
Q Consensus 1 Dt~G~e~~~------~~~~~~~~--~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~ 71 (142)
||||+++|. .+...|++ ++|++++|+|+++..+ ...|+..+.. .++|+++|+||+|+.. +.
T Consensus 56 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~---~~~~~~~~~~-------~~~p~ilv~nK~Dl~~~~~ 125 (165)
T 2wji_A 56 DLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALER---NLYLTLQLME-------MGANLLLALNKMDLAKSLG 125 (165)
T ss_dssp ECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHHH---HHHHHHHHHH-------TTCCEEEEEECHHHHHHTT
T ss_pred ECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchhH---hHHHHHHHHh-------cCCCEEEEEEchHhccccC
Confidence 899999885 45577775 8999999999988543 3457766642 3689999999999854 33
Q ss_pred CCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 72 VDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
+.. ....++..++ .+++++||++|.|++++|.++.+.+
T Consensus 126 ~~~-~~~~~~~~~~-~~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 126 IEI-DVDKLEKILG-VKVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp CCC-CHHHHHHHHT-SCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred hhh-HHHHHHHHhC-CCEEEEEcCCCCCHHHHHHHHHHHh
Confidence 332 3566778888 5699999999999999999998764
No 115
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.69 E-value=7.3e-17 Score=108.19 Aligned_cols=102 Identities=15% Similarity=0.237 Sum_probs=78.6
Q ss_pred CCCc----------chhhhhhhHhhhccC---CEEEEEEeCCChhhHH--HHHHHHHHHHHhcccCCCCCCCEEEEEeCC
Q psy10891 1 MTEG----------QERFTWMTRVYYKDA---HGCIIMFDLTNQNSFK--NTLKWKKDVDLKCTLSDGSPIPCMLLANKC 65 (142)
Q Consensus 1 Dt~G----------~e~~~~~~~~~~~~a---d~ii~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 65 (142)
|||| ++.|..++..+++.+ |++++|+|.++..+.. .+..|+... ++|+++|+||+
T Consensus 74 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~----------~~p~i~v~nK~ 143 (195)
T 3pqc_A 74 DLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL----------NIPFTIVLTKM 143 (195)
T ss_dssp ECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT----------TCCEEEEEECG
T ss_pred ECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc----------CCCEEEEEECh
Confidence 7999 899999999999877 9999999998764433 333444332 68999999999
Q ss_pred CCCC---CCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 66 DLPH---RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 66 D~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
|+.. .....+.+..++...+..++++|||+++.|++++|.+|.+.+.
T Consensus 144 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 144 DKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp GGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred hcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 9865 1223345555666655567999999999999999999998874
No 116
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.68 E-value=4.1e-17 Score=117.54 Aligned_cols=95 Identities=15% Similarity=0.145 Sum_probs=79.2
Q ss_pred chhhhhhhHhhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHHHHH
Q psy10891 5 QERFTWMTRVYYKDAHGCIIMFDLTNQN-SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIECFYK 82 (142)
Q Consensus 5 ~e~~~~~~~~~~~~ad~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~~~~ 82 (142)
|++|+.+++.|++++|++|+|||++++. ++..+..|+..+.. .++|++||+||+|+.+ +.+ +++..++.
T Consensus 71 qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~-------~~~piilv~NK~DL~~~~~v--~~~~~~~~ 141 (301)
T 1u0l_A 71 LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK-------NELETVMVINKMDLYDEDDL--RKVRELEE 141 (301)
T ss_dssp CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH-------TTCEEEEEECCGGGCCHHHH--HHHHHHHH
T ss_pred ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH-------CCCCEEEEEeHHHcCCchhH--HHHHHHHH
Confidence 8999999999999999999999999987 78888999987742 4799999999999965 221 34566776
Q ss_pred HcCC-ceEEEeeccCCCCHHHHHHHHH
Q psy10891 83 EHNF-IGWTETSTKEGLMVNDSMKFLL 108 (142)
Q Consensus 83 ~~~~-~~~~~~Sa~~~~~i~~l~~~l~ 108 (142)
.++. .++++|||+++.|++++|..+.
T Consensus 142 ~~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 142 IYSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp HHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred HHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 6652 3599999999999999998874
No 117
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.68 E-value=2.8e-16 Score=105.94 Aligned_cols=106 Identities=28% Similarity=0.540 Sum_probs=91.6
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||+|+++|..++..+++.++++++|+|+++..++..+..|+..+... ...+.|+++++||+|+.. +.+.......
T Consensus 84 Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~ 159 (191)
T 1oix_A 84 DTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDH----ADSNIVIMLVGNKSDLRHLRAVPTDEARA 159 (191)
T ss_dssp EECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHH----SCTTCEEEEEEECGGGGGGCCSCHHHHHH
T ss_pred ECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHh----cCCCCcEEEEEECcccccccccCHHHHHH
Confidence 78999999999999999999999999999999999888898776432 224689999999999876 5567788888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
++...++ .++++||+++.++.++|+.|.+.+
T Consensus 160 l~~~~~~-~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 160 FAEKNGL-SFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp HHHHTTC-EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHcCC-EEEEEeCCCCCCHHHHHHHHHHHh
Confidence 8988884 599999999999999999998765
No 118
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.68 E-value=1.7e-17 Score=121.01 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=86.7
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCC----------ChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLT----------NQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH- 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~- 69 (142)
|||||++|+.+|..||++++++|||||++ +..++.....|+..+... ....++|+||++||+|+..
T Consensus 167 DtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~---~~~~~~piiLv~NK~DL~~e 243 (340)
T 4fid_A 167 DVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTN---EFLKGAVKLIFLNKMDLFEE 243 (340)
T ss_dssp ECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHC---GGGTTSEEEEEEECHHHHHH
T ss_pred cCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhh---hccCCCeEEEEEECchhhhh
Confidence 89999999999999999999999999998 678888888888877532 2336799999999999743
Q ss_pred C---------------CCCHHHHHHHHH-Hc-------------------------CCceEEEeeccCCCCHHHHHHHHH
Q psy10891 70 R---------------QVDINDIECFYK-EH-------------------------NFIGWTETSTKEGLMVNDSMKFLL 108 (142)
Q Consensus 70 ~---------------~~~~~~~~~~~~-~~-------------------------~~~~~~~~Sa~~~~~i~~l~~~l~ 108 (142)
+ ....+.+..++. .+ ..+.+++|||++..+|..+|..+.
T Consensus 244 ki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~~v~ 323 (340)
T 4fid_A 244 KLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFMLAV 323 (340)
T ss_dssp HHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHHHHHH
T ss_pred hcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHHHHHH
Confidence 0 023444444332 22 124578999999999999999999
Q ss_pred HHHHH
Q psy10891 109 DVLMR 113 (142)
Q Consensus 109 ~~~~~ 113 (142)
..+++
T Consensus 324 ~~Il~ 328 (340)
T 4fid_A 324 DVIMK 328 (340)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99987
No 119
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.67 E-value=1.1e-16 Score=123.32 Aligned_cols=105 Identities=16% Similarity=0.223 Sum_probs=85.8
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||++.|..++..+++++|++|+|+|+++. +....|+..+.... +++|+|+|+||+|+.. +.+..+.+..
T Consensus 104 Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-----~~~pvilV~NK~Dl~~~~~v~~~~~~~ 175 (535)
T 3dpu_A 104 DFGGQEIMHASHQFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-----GKSPVIVVMNKIDENPSYNIEQKKINE 175 (535)
T ss_dssp CCCSCCTTTTTCHHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-----SSCCEEEEECCTTTCTTCCCCHHHHHH
T ss_pred ECCcHHHHHHHHHHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-----CCCCEEEEEECCCcccccccCHHHHHH
Confidence 8999999999999999999999999999765 55567888887554 5799999999999976 6667788888
Q ss_pred HHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 80 FYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 80 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
++...+ .++++|||++|.|++++|..+...+.+.
T Consensus 176 ~~~~~~-~~~~~vSA~~g~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 176 RFPAIE-NRFHRISCKNGDGVESIAKSLKSAVLHP 209 (535)
T ss_dssp HCGGGT-TCEEECCC-----CTTHHHHHHHHHTCT
T ss_pred HHHhcC-CceEEEecCcccCHHHHHHHHHHHHhcc
Confidence 888887 4699999999999999999999888653
No 120
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.66 E-value=2.9e-16 Score=113.36 Aligned_cols=105 Identities=17% Similarity=0.161 Sum_probs=87.4
Q ss_pred CCCcchh----------hhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC-C
Q psy10891 1 MTEGQER----------FTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP-H 69 (142)
Q Consensus 1 Dt~G~e~----------~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~-~ 69 (142)
||||+.+ +...+..++.++|++++|+|++++.++.....|+..+.. .++|+++|+||+|+. .
T Consensus 65 DTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~-------~~~pvilV~NK~Dl~~~ 137 (308)
T 3iev_A 65 DTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP-------LNKPVIVVINKIDKIGP 137 (308)
T ss_dssp ECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG-------GCCCEEEEEECGGGSSS
T ss_pred ECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh-------cCCCEEEEEECccCCCC
Confidence 8999844 446778889999999999999998888887777777742 468999999999997 4
Q ss_pred CCCCHHHHHHHHHHcC-CceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 70 RQVDINDIECFYKEHN-FIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 70 ~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
+....+.+..+...++ +.+++++||++|.|++++|..|...+.
T Consensus 138 ~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 138 AKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLP 181 (308)
T ss_dssp GGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCc
Confidence 5556677777888773 567999999999999999999998874
No 121
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.65 E-value=1e-15 Score=102.85 Aligned_cols=103 Identities=13% Similarity=0.092 Sum_probs=76.4
Q ss_pred CCCc----------chhhhhhhHhhhccC---CEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCC
Q psy10891 1 MTEG----------QERFTWMTRVYYKDA---HGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDL 67 (142)
Q Consensus 1 Dt~G----------~e~~~~~~~~~~~~a---d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 67 (142)
|||| ++.|..++..++..+ |++++|+|++++.++.... ++..+.. .++|+++|+||+|+
T Consensus 75 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~-------~~~p~i~v~nK~Dl 146 (195)
T 1svi_A 75 DVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY-------YGIPVIVIATKADK 146 (195)
T ss_dssp ECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH-------TTCCEEEEEECGGG
T ss_pred ECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH-------cCCCEEEEEECccc
Confidence 8999 999999999999888 9999999999887776643 2222221 47899999999999
Q ss_pred CCCCCCHHHHHHHHHHc---CCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 68 PHRQVDINDIECFYKEH---NFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 68 ~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
............+.+.+ ...+++++||+++.|++++|.+|.+.+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 147 IPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp SCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHh
Confidence 76221122222333322 235799999999999999999998876
No 122
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.64 E-value=2.2e-16 Score=102.85 Aligned_cols=99 Identities=16% Similarity=0.083 Sum_probs=73.2
Q ss_pred CCCcchh-------hhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCC
Q psy10891 1 MTEGQER-------FTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVD 73 (142)
Q Consensus 1 Dt~G~e~-------~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~ 73 (142)
||||++. +...+..+++.+|++++|+|++++.+... .|+..+... .++|+++|+||+|+...
T Consensus 55 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~------~~~p~ilv~nK~Dl~~~--- 123 (161)
T 2dyk_A 55 DTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQAD--YEVAEYLRR------KGKPVILVATKVDDPKH--- 123 (161)
T ss_dssp ECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHH--HHHHHHHHH------HTCCEEEEEECCCSGGG---
T ss_pred ECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhH--HHHHHHHHh------cCCCEEEEEECcccccc---
Confidence 8999987 45567788999999999999998644432 233222211 36899999999998652
Q ss_pred HHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 74 INDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
.+.+..++ .+++.+++++||+++.|++++|.++.+.+
T Consensus 124 ~~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 124 ELYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp GGGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred hHhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence 23333444 56754799999999999999999998764
No 123
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.60 E-value=5.2e-15 Score=111.95 Aligned_cols=108 Identities=10% Similarity=0.103 Sum_probs=83.3
Q ss_pred CCCc----------chhhhhhhHh-hhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 1 MTEG----------QERFTWMTRV-YYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 1 Dt~G----------~e~~~~~~~~-~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
|||| +|+|..++.. +++.+|++++|+|+++..+... ..|+..+.. .++|+|+|+||+|+.+
T Consensus 249 DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~-~~~~~~~~~-------~~~~~ilv~NK~Dl~~ 320 (456)
T 4dcu_A 249 DTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQD-KRIAGYAHE-------AGKAVVIVVNKWDAVD 320 (456)
T ss_dssp TGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH-------TTCEEEEEEECGGGSC
T ss_pred ECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHH-HHHHHHHHH-------cCCCEEEEEEChhcCC
Confidence 8999 8999988764 7899999999999998654333 345555531 4789999999999976
Q ss_pred -CCCCHHHHHHHHHHc----CCceEEEeeccCCCCHHHHHHHHHHHHHHHhC
Q psy10891 70 -RQVDINDIECFYKEH----NFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116 (142)
Q Consensus 70 -~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 116 (142)
+.+..+++...+... +..++++|||++|.|++++|..+...+.....
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~ 372 (456)
T 4dcu_A 321 KDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSL 372 (456)
T ss_dssp CCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred CchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence 445555555555543 34679999999999999999999998876643
No 124
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.60 E-value=5.4e-16 Score=103.62 Aligned_cols=102 Identities=16% Similarity=0.124 Sum_probs=80.1
Q ss_pred CCCcchhhh------hhhHhhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CC
Q psy10891 1 MTEGQERFT------WMTRVYYK--DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQ 71 (142)
Q Consensus 1 Dt~G~e~~~------~~~~~~~~--~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~ 71 (142)
||||+++|. .++..|+. .+|++++|+|.++ +.....|+..+.. .+.|+++|+||+|+.. +.
T Consensus 60 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~-------~~~piilv~nK~Dl~~~~~ 129 (188)
T 2wjg_A 60 DLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLME-------MGANLLLALNKMDLAKSLG 129 (188)
T ss_dssp ECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT-------TTCCEEEEEECHHHHHHTT
T ss_pred ECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHh-------cCCCEEEEEEhhhcccccc
Confidence 899999885 45677775 5999999999875 4555678777741 4789999999999865 33
Q ss_pred CCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 72 VDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
+. .....+++.++ .+++++||+++.|++++|+++...+...
T Consensus 130 ~~-~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 130 IE-IDVDKLEKILG-VKVVPLSAAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp CC-CCHHHHHHHHT-SCEEECBGGGTBSHHHHHHHHHHHHTTC
T ss_pred ch-HHHHHHHHHhC-CCeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 33 34567778888 4699999999999999999999887543
No 125
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.59 E-value=1.4e-16 Score=105.69 Aligned_cols=100 Identities=14% Similarity=0.096 Sum_probs=72.0
Q ss_pred CCCcchhhhhh--------hHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC
Q psy10891 1 MTEGQERFTWM--------TRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV 72 (142)
Q Consensus 1 Dt~G~e~~~~~--------~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~ 72 (142)
||||++++... ...+++++|++++|||++++.++.. ..|+..+... ...++|+++|+||+|+.....
T Consensus 58 Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~----~~~~~p~ilv~NK~Dl~~~~~ 132 (172)
T 2gj8_A 58 DTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDP-AEIWPEFIAR----LPAKLPITVVRNKADITGETL 132 (172)
T ss_dssp ECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHH----SCTTCCEEEEEECHHHHCCCC
T ss_pred ECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHh----cccCCCEEEEEECccCCcchh
Confidence 89998754211 1246899999999999999888764 4677666432 224799999999999853111
Q ss_pred CHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 73 DINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
.++...+ .++++|||+++.|++++|.+|.+.+.
T Consensus 133 ------~~~~~~~-~~~~~~SA~~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 133 ------GMSEVNG-HALIRLSARTGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp ------EEEEETT-EEEEECCTTTCTTHHHHHHHHHHHC-
T ss_pred ------hhhhccC-CceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 0111223 57999999999999999999987763
No 126
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.58 E-value=4.8e-15 Score=115.24 Aligned_cols=105 Identities=16% Similarity=0.160 Sum_probs=86.3
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|...+..+++.+|++|+|+|+++..+......|..... .++|+|+|+||+|+.... .......+
T Consensus 77 DTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~--------~~ipiIvViNKiDl~~a~-~~~v~~ei 147 (599)
T 3cb4_D 77 DTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME--------MDLEVVPVLNKIDLPAAD-PERVAEEI 147 (599)
T ss_dssp ECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH--------TTCEEEEEEECTTSTTCC-HHHHHHHH
T ss_pred ECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--------CCCCEEEeeeccCccccc-HHHHHHHH
Confidence 899999999999999999999999999999877777777876664 478999999999996521 23445566
Q ss_pred HHHcCCc--eEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 81 YKEHNFI--GWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 81 ~~~~~~~--~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
...+++. +++++||++|.|++++|+.|...+...
T Consensus 148 ~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p 183 (599)
T 3cb4_D 148 EDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPP 183 (599)
T ss_dssp HHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred HHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCc
Confidence 6666642 489999999999999999999887543
No 127
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.58 E-value=1.4e-15 Score=108.05 Aligned_cols=99 Identities=16% Similarity=0.104 Sum_probs=77.7
Q ss_pred CCCcchhhh------hhhHhhhc--cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CC
Q psy10891 1 MTEGQERFT------WMTRVYYK--DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQ 71 (142)
Q Consensus 1 Dt~G~e~~~------~~~~~~~~--~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~ 71 (142)
||||++.|. .++..|+. ++|++++|+|+++..++ ..|...+.. .++|+++|+||+|+.. +.
T Consensus 55 DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~---~~~~~~l~~-------~~~p~ilv~NK~Dl~~~~~ 124 (272)
T 3b1v_A 55 DLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERN---LYLTTQLIE-------TGIPVTIALNMIDVLDGQG 124 (272)
T ss_dssp ECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHH---HHHHHHHHH-------TCSCEEEEEECHHHHHHTT
T ss_pred ECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhH---HHHHHHHHh-------cCCCEEEEEEChhhCCcCC
Confidence 899999887 56677776 69999999999886544 346555532 4799999999999854 33
Q ss_pred CCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 72 VDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
+. .....++..++ .+++++||++|.|++++|.++...+
T Consensus 125 ~~-~~~~~l~~~lg-~~vi~~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 125 KK-INVDKLSYHLG-VPVVATSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp CC-CCHHHHHHHHT-SCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred cH-HHHHHHHHHcC-CCEEEEEccCCCCHHHHHHHHHHHH
Confidence 33 34566778888 5699999999999999999998764
No 128
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.58 E-value=2.7e-15 Score=111.92 Aligned_cols=106 Identities=11% Similarity=0.065 Sum_probs=79.4
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCC---HHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVD---INDI 77 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~---~~~~ 77 (142)
||||+++|...+..++..+|++++|+|++++.++.....|+..+... ...|+++|+||+|+.+.... .+.+
T Consensus 81 DtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~------~~~~iivviNK~Dl~~~~~~~~~~~~i 154 (403)
T 3sjy_A 81 DAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII------GVKNLIIVQNKVDVVSKEEALSQYRQI 154 (403)
T ss_dssp ECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH------TCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred ECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc------CCCCEEEEEECccccchHHHHHHHHHH
Confidence 89999999999999999999999999999876666666676655422 23589999999998652111 1122
Q ss_pred HHHHHHcC--CceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 78 ECFYKEHN--FIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 78 ~~~~~~~~--~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
..++...+ ..+++++||++|.|++++++.|...+.
T Consensus 155 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 155 KQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp HHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 22222221 256999999999999999999987664
No 129
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.58 E-value=4e-16 Score=109.99 Aligned_cols=99 Identities=10% Similarity=-0.013 Sum_probs=74.7
Q ss_pred CCCcchhhhh----------hhHhhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC
Q psy10891 1 MTEGQERFTW----------MTRVYY--KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP 68 (142)
Q Consensus 1 Dt~G~e~~~~----------~~~~~~--~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 68 (142)
||||+..+.. ++..|+ .++|++++|+|+++..++..+ ...+. ..++|+++|+||+|+.
T Consensus 54 DtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l---~~~l~-------~~~~pvilv~NK~Dl~ 123 (256)
T 3iby_A 54 DLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYL---TSQLF-------ELGKPVVVALNMMDIA 123 (256)
T ss_dssp ECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHH---HHHHT-------TSCSCEEEEEECHHHH
T ss_pred eCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHH---HHHHH-------HcCCCEEEEEEChhcC
Confidence 8999988874 567777 899999999999986655443 33332 1379999999999986
Q ss_pred CCCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891 69 HRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDV 110 (142)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 110 (142)
...........+...++ .|++++||++|.|++++|.++...
T Consensus 124 ~~~~~~~~~~~l~~~lg-~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 124 EHRGISIDTEKLESLLG-CSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp HHTTCEECHHHHHHHHC-SCEEECBGGGTBSHHHHHHHHHTC
T ss_pred CcCCcHHHHHHHHHHcC-CCEEEEECCCCCCHHHHHHHHHhh
Confidence 51111223455777778 579999999999999999999876
No 130
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.58 E-value=1.2e-14 Score=112.97 Aligned_cols=104 Identities=15% Similarity=0.200 Sum_probs=85.7
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||+++|...+..+++.+|++|+|+|+++..+......|..... .++|+|+|+||+|+.... .......+
T Consensus 79 DTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~--------~~ipiIvviNKiDl~~a~-~~~v~~el 149 (600)
T 2ywe_A 79 DTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE--------QDLVIIPVINKIDLPSAD-VDRVKKQI 149 (600)
T ss_dssp CCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH--------TTCEEEEEEECTTSTTCC-HHHHHHHH
T ss_pred ECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH--------CCCCEEEEEeccCccccC-HHHHHHHH
Confidence 899999999999999999999999999999888888778876653 478999999999996522 23345556
Q ss_pred HHHcCCc--eEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 81 YKEHNFI--GWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 81 ~~~~~~~--~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
...+++. +++++||++|.|+.++|+.|+..+..
T Consensus 150 ~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 150 EEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp HHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHhhCCCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence 6666642 48999999999999999999887753
No 131
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.58 E-value=4.5e-15 Score=101.74 Aligned_cols=106 Identities=15% Similarity=0.117 Sum_probs=75.8
Q ss_pred CCCc----------chhhhhhhHhhhcc---CCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCC
Q psy10891 1 MTEG----------QERFTWMTRVYYKD---AHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDL 67 (142)
Q Consensus 1 Dt~G----------~e~~~~~~~~~~~~---ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 67 (142)
|||| ++.|..++..|++. +|++++|+|++++.+... ..|+..+.. .++|+++|+||+|+
T Consensus 85 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~l~~-------~~~p~i~v~nK~Dl 156 (223)
T 4dhe_A 85 DLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELD-RRMIEWFAP-------TGKPIHSLLTKCDK 156 (223)
T ss_dssp ECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHGG-------GCCCEEEEEECGGG
T ss_pred cCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHH-HHHHHHHHh-------cCCCEEEEEecccc
Confidence 8999 68888888888877 778999999987644332 345555531 46899999999998
Q ss_pred CCCCC---CHHHHHHHHHHc------CCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 68 PHRQV---DINDIECFYKEH------NFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 68 ~~~~~---~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
..... ....+......+ ...+++++||+++.|++++|.+|...+...
T Consensus 157 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 157 LTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred CChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 65111 112222233332 446799999999999999999999988654
No 132
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.56 E-value=2.5e-15 Score=106.07 Aligned_cols=100 Identities=17% Similarity=0.100 Sum_probs=78.1
Q ss_pred CCCcchhhhh------hhHhhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CC
Q psy10891 1 MTEGQERFTW------MTRVYY--KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQ 71 (142)
Q Consensus 1 Dt~G~e~~~~------~~~~~~--~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~ 71 (142)
||||+..+.. +...|+ .++|++++|+|+++..+.. .|...+.. .++|+++|+||+|+.. +.
T Consensus 58 DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~~---~~~~~l~~-------~~~pvilv~NK~Dl~~~~~ 127 (258)
T 3a1s_A 58 DLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQSL---YLLLEILE-------MEKKVILAMTAIDEAKKTG 127 (258)
T ss_dssp ECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHHH---HHHHHHHT-------TTCCEEEEEECHHHHHHTT
T ss_pred ECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhHH---HHHHHHHh-------cCCCEEEEEECcCCCCccc
Confidence 8999998875 336666 5899999999999865543 46555531 3799999999999865 33
Q ss_pred CCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 72 VDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
+.. ....+++.++ .+++++||++|.|++++|..+...+.
T Consensus 128 i~~-~~~~l~~~lg-~~vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 128 MKI-DRYELQKHLG-IPVVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp CCB-CHHHHHHHHC-SCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hHH-HHHHHHHHcC-CCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence 332 3567788888 57999999999999999999988764
No 133
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.56 E-value=1.3e-14 Score=109.31 Aligned_cols=107 Identities=9% Similarity=0.091 Sum_probs=81.5
Q ss_pred CCCcc----------hhhhhhhH-hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 1 MTEGQ----------ERFTWMTR-VYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 1 Dt~G~----------e~~~~~~~-~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
||||+ |+|..++. .+++++|++++|+|++++.++.+. .|+..+.. .++|+++|+||+|+.+
T Consensus 229 DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~-------~~~~iiiv~NK~Dl~~ 300 (436)
T 2hjg_A 229 DTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE-------AGKAVVIVVNKWDAVD 300 (436)
T ss_dssp THHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH-------TTCEEEEEEECGGGSC
T ss_pred ECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH-------cCCcEEEEEECccCCC
Confidence 89998 77877755 488999999999999998888775 57666531 4789999999999876
Q ss_pred -CCCCHHHH-HHHHHHc---CCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 70 -RQVDINDI-ECFYKEH---NFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 70 -~~~~~~~~-~~~~~~~---~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
+....++. ..+...+ ...+++++||++|.|++++|..+...+....
T Consensus 301 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~ 351 (436)
T 2hjg_A 301 KDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHS 351 (436)
T ss_dssp CCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHHHhh
Confidence 33322332 2233332 3367999999999999999999998887654
No 134
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.56 E-value=3.9e-15 Score=107.23 Aligned_cols=97 Identities=15% Similarity=0.144 Sum_probs=78.9
Q ss_pred cchhhhhhhHhhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC-CCC-HHHHHHH
Q psy10891 4 GQERFTWMTRVYYKDAHGCIIMFDLTNQN-SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR-QVD-INDIECF 80 (142)
Q Consensus 4 G~e~~~~~~~~~~~~ad~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~-~~~~~~~ 80 (142)
.+++|+.+.+.+++++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+. .+. .+....+
T Consensus 65 i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~-------~~~~~ilV~NK~DL~~~~~v~~~~~~~~~ 137 (302)
T 2yv5_A 65 VEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY-------FKVEPVIVFNKIDLLNEEEKKELERWISI 137 (302)
T ss_dssp ECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH-------TTCEEEEEECCGGGCCHHHHHHHHHHHHH
T ss_pred eCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh-------CCCCEEEEEEcccCCCccccHHHHHHHHH
Confidence 48899999999999999999999999986 88888999987742 47999999999998652 111 3344555
Q ss_pred HHHcCCceEEEeeccCCCCHHHHHHHHH
Q psy10891 81 YKEHNFIGWTETSTKEGLMVNDSMKFLL 108 (142)
Q Consensus 81 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 108 (142)
++..+ .+++++||+++.|+++++..+.
T Consensus 138 ~~~~g-~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 138 YRDAG-YDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp HHHTT-CEEEECCTTTCTTHHHHHHHTT
T ss_pred HHHCC-CeEEEEECCCCCCHHHHHhhcc
Confidence 66677 4699999999999999998763
No 135
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.55 E-value=1.5e-15 Score=103.86 Aligned_cols=98 Identities=19% Similarity=0.208 Sum_probs=69.0
Q ss_pred CCCcchhhhhhhHhhhcc----CCEEEEEEeCC-ChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCC-
Q psy10891 1 MTEGQERFTWMTRVYYKD----AHGCIIMFDLT-NQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVD- 73 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~----ad~ii~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~- 73 (142)
||||+++|..++..|+++ +|++|+|+|++ ++.++.....|+..+..........++|+++|+||+|+.. +.+.
T Consensus 61 Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~ 140 (218)
T 1nrj_B 61 DFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSK 140 (218)
T ss_dssp ECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHH
T ss_pred ECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHH
Confidence 899999999999999987 89999999999 8889998888887775432100235799999999999976 2222
Q ss_pred -----HHHHHHHHHHcCCceEEEeeccCCCC
Q psy10891 74 -----INDIECFYKEHNFIGWTETSTKEGLM 99 (142)
Q Consensus 74 -----~~~~~~~~~~~~~~~~~~~Sa~~~~~ 99 (142)
.+.+..++...+ .+++++||+++.+
T Consensus 141 ~~~~l~~~~~~~~~~~~-~~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 141 IKDALESEIQKVIERRK-KSLNEVERKINEE 170 (218)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHC--------
T ss_pred HHHHHHHHHHHHHHHHh-ccccccccccccc
Confidence 344566666666 4689999998865
No 136
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.54 E-value=5.6e-15 Score=106.39 Aligned_cols=101 Identities=16% Similarity=0.131 Sum_probs=74.1
Q ss_pred CCCcchh--------hhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHH-HHHHHhcccCCCCCCCEEEEEeCCCCCCCC
Q psy10891 1 MTEGQER--------FTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWK-KDVDLKCTLSDGSPIPCMLLANKCDLPHRQ 71 (142)
Q Consensus 1 Dt~G~e~--------~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~ 71 (142)
||||+.+ |......+++++|++++|+|++++.+... .|+ ..+... ..++|+++|+||+|+....
T Consensus 61 DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~-----~~~~p~ilV~NK~Dl~~~~ 133 (301)
T 1wf3_A 61 DTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPED--ELVARALKPL-----VGKVPILLVGNKLDAAKYP 133 (301)
T ss_dssp ECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGG-----TTTSCEEEEEECGGGCSSH
T ss_pred cCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHH--HHHHHHHHhh-----cCCCCEEEEEECcccCCch
Confidence 8999876 56667888999999999999998755443 444 455321 1479999999999986421
Q ss_pred CCHHHHHHHHHH-cCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 72 VDINDIECFYKE-HNFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 72 ~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
..+...... .++.+++++||+++.|++++|+.|...+
T Consensus 134 ---~~~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 134 ---EEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALM 171 (301)
T ss_dssp ---HHHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred ---HHHHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHhc
Confidence 102233333 3555789999999999999999998765
No 137
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.53 E-value=1.5e-15 Score=107.96 Aligned_cols=100 Identities=16% Similarity=0.082 Sum_probs=73.9
Q ss_pred CCCcchhhhh----------hhHhhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC
Q psy10891 1 MTEGQERFTW----------MTRVYY--KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP 68 (142)
Q Consensus 1 Dt~G~e~~~~----------~~~~~~--~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 68 (142)
||||+..+.. ++..|+ .++|++++|+|+++..+...+..|+.+. ++|+++|+||+|+.
T Consensus 56 DtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~----------~~p~ivv~NK~Dl~ 125 (274)
T 3i8s_A 56 DLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLYLTLQLLEL----------GIPCIVALNMLDIA 125 (274)
T ss_dssp ECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHHHHHHHHHH----------TCCEEEEEECHHHH
T ss_pred ECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHHHHHHHHhc----------CCCEEEEEECccch
Confidence 8999988773 234444 7999999999999866554433443332 68999999999986
Q ss_pred CCCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 69 HRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
...........+++.++ .+++++||++|.|++++|..|...+
T Consensus 126 ~~~~~~~~~~~l~~~lg-~~~i~~SA~~g~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 126 EKQNIRIEIDALSARLG-CPVIPLVSTRGRGIEALKLAIDRYK 167 (274)
T ss_dssp HHTTEEECHHHHHHHHT-SCEEECCCGGGHHHHHHHHHHHTCC
T ss_pred hhhhHHHHHHHHHHhcC-CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 41111223456777788 5799999999999999999887655
No 138
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.53 E-value=2e-14 Score=109.22 Aligned_cols=100 Identities=15% Similarity=0.047 Sum_probs=65.8
Q ss_pred CCCcchhhhhhh--------HhhhccCCEEEEEEeCCChhhHHHH---HHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 1 MTEGQERFTWMT--------RVYYKDAHGCIIMFDLTNQNSFKNT---LKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 1 Dt~G~e~~~~~~--------~~~~~~ad~ii~v~d~~~~~s~~~~---~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
||||++++...+ ..++.++|++++|+|++++.++... ..|+..+ .++|+|+|+||+|+..
T Consensus 287 DT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l---------~~~piIvV~NK~Dl~~ 357 (476)
T 3gee_A 287 DTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH---------PAAKFLTVANKLDRAA 357 (476)
T ss_dssp C--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC---------TTSEEEEEEECTTSCT
T ss_pred ECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc---------CCCCEEEEEECcCCCC
Confidence 899998877554 3468899999999999998877533 3344433 3789999999999965
Q ss_pred CCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 70 RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
.. ......+... ++.++++|||+++.|++++|.+|...+.
T Consensus 358 ~~--~~~~~~l~~~-~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 358 NA--DALIRAIADG-TGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TT--HHHHHHHHHH-HTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred cc--chhHHHHHhc-CCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 21 1122334333 2356999999999999999999999885
No 139
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.51 E-value=1.4e-13 Score=101.22 Aligned_cols=107 Identities=17% Similarity=0.196 Sum_probs=80.1
Q ss_pred CCCcchhhh---------hhhHhhhccCCEEEEEEeCCChh--hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 1 MTEGQERFT---------WMTRVYYKDAHGCIIMFDLTNQN--SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 1 Dt~G~e~~~---------~~~~~~~~~ad~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
||||+..+. .....+...+|++++|+|++++. ++.....|+..+.... .+.|+++|+||+|+..
T Consensus 220 Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-----~~~piilV~NK~Dl~~ 294 (357)
T 2e87_A 220 DTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-----KDLPFLVVINKIDVAD 294 (357)
T ss_dssp ECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT-----TTSCEEEEECCTTTCC
T ss_pred eCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc-----CCCCEEEEEECcccCC
Confidence 799975532 12224456799999999998876 6777778888886433 3799999999999865
Q ss_pred CCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 70 RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
.. ..+....++...+ .++++|||++|.|+++++.+|...+...
T Consensus 295 ~~-~~~~~~~~~~~~~-~~~~~iSA~~g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 295 EE-NIKRLEKFVKEKG-LNPIKISALKGTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp HH-HHHHHHHHHHHTT-CCCEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred hH-HHHHHHHHHHhcC-CCeEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence 11 1234455566666 5699999999999999999999988654
No 140
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.51 E-value=1.2e-13 Score=106.06 Aligned_cols=61 Identities=18% Similarity=0.094 Sum_probs=51.7
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
||||+++|...+..+++.+|++|+|+|+++..+......|..... .++|+++|+||+|+..
T Consensus 88 DTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~--------~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 88 DTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRL--------RHTPIMTFINKMDRDT 148 (528)
T ss_dssp CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHT--------TTCCEEEEEECTTSCC
T ss_pred ECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--------cCCCEEEEEeCCCCcc
Confidence 999999999999999999999999999998877777665543321 4789999999999864
No 141
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.50 E-value=4.4e-14 Score=96.18 Aligned_cols=109 Identities=7% Similarity=-0.057 Sum_probs=68.6
Q ss_pred CCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCC-CCCCCEEEEEeCC-CCCCCCCCHHHHHH
Q psy10891 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSD-GSPIPCMLLANKC-DLPHRQVDINDIEC 79 (142)
Q Consensus 2 t~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~-D~~~~~~~~~~~~~ 79 (142)
.+||++++.+|+.||.++|++|||+|++|..-++ ...-+.++........ ..++|+++.+||. |+.. ..+..++..
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~-Ams~~EI~e 186 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK-RMPCFYLAH 186 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC-BCCHHHHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC-CCCHHHHHH
Confidence 4699999999999999999999999999874333 2222222222112221 3689999999995 6753 455555554
Q ss_pred HHHHc--C-CceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 80 FYKEH--N-FIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 80 ~~~~~--~-~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
..... . .-.+..|||.+|+|+.+.++||+..+.
T Consensus 187 ~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~ 222 (227)
T 3l82_B 187 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 222 (227)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred HcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence 43221 1 122778999999999999999987663
No 142
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.50 E-value=1.1e-13 Score=105.41 Aligned_cols=101 Identities=15% Similarity=0.135 Sum_probs=76.7
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCC---hhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC---CCCH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTN---QNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR---QVDI 74 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~---~~~~ 74 (142)
||||+++|...+..++..+|++++|+|+++ +.+.+.+. .+.. .++|+|+|+||+|+.+. ....
T Consensus 79 DtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~-------~~ip~IvviNK~Dl~~~~~~~~~~ 147 (482)
T 1wb1_A 79 DAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHML----ILDH-------FNIPIIVVITKSDNAGTEEIKRTE 147 (482)
T ss_dssp CCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHH----HHHH-------TTCCBCEEEECTTSSCHHHHHHHH
T ss_pred ECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHH----HHHH-------cCCCEEEEEECCCcccchhHHHHH
Confidence 899999999999999999999999999988 44544332 2211 36889999999998651 1122
Q ss_pred HHHHHHHHHc-C--CceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 75 NDIECFYKEH-N--FIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 75 ~~~~~~~~~~-~--~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
+++..++... + ..+++++||++|.|+.++++.|...+.
T Consensus 148 ~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 148 MIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp HHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 3344455554 2 256999999999999999999998876
No 143
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.49 E-value=1.2e-14 Score=108.87 Aligned_cols=101 Identities=15% Similarity=0.046 Sum_probs=77.9
Q ss_pred CCCcchhhhhh-------hHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCC
Q psy10891 1 MTEGQERFTWM-------TRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVD 73 (142)
Q Consensus 1 Dt~G~e~~~~~-------~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~ 73 (142)
||||+++|..+ +..++.++|++++|+|++... ....|+..+.. .++|+++|+||+|+.... .
T Consensus 89 DTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~~---~~~~~l~~l~~-------~~~piIvV~NK~Dl~~~~-~ 157 (423)
T 3qq5_A 89 DTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPTP---YEDDVVNLFKE-------MEIPFVVVVNKIDVLGEK-A 157 (423)
T ss_dssp ECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCCH---HHHHHHHHHHH-------TTCCEEEECCCCTTTTCC-C
T ss_pred ECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCChH---HHHHHHHHHHh-------cCCCEEEEEeCcCCCCcc-H
Confidence 89999988765 455889999999999994332 23467766642 278999999999997622 2
Q ss_pred HHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 74 INDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
.+....++..++ .+++++||+++.|++++|..|.+.+.+
T Consensus 158 ~~~~~~l~~~~g-~~v~~vSAktg~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 158 EELKGLYESRYE-AKVLLVSALQKKGFDDIGKTISEILPG 196 (423)
T ss_dssp THHHHHSSCCTT-CCCCCCSSCCTTSTTTHHHHHHHHSCC
T ss_pred HHHHHHHHHHcC-CCEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 255556666667 469999999999999999999988843
No 144
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.49 E-value=7.3e-14 Score=105.23 Aligned_cols=103 Identities=16% Similarity=0.137 Sum_probs=73.9
Q ss_pred CCCcchh---------hhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCC
Q psy10891 1 MTEGQER---------FTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQ 71 (142)
Q Consensus 1 Dt~G~e~---------~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~ 71 (142)
||||++. +..++..++++||++++|+|++++.+..+ .|+..+.+. .++|+++|+||+|+...
T Consensus 55 DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d--~~i~~~l~~------~~~p~ilv~NK~D~~~~- 125 (439)
T 1mky_A 55 DTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKED--ESLADFLRK------STVDTILVANKAENLRE- 125 (439)
T ss_dssp ECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH--HHHHHHHHH------HTCCEEEEEESCCSHHH-
T ss_pred ECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH------cCCCEEEEEeCCCCccc-
Confidence 8999764 45567889999999999999988665543 222222211 26899999999997421
Q ss_pred CCHHHH-HHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 72 VDINDI-ECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 72 ~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
. .... ..+. ..++.+++++||++|.|+.++++.+...+.+.
T Consensus 126 ~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 126 F-EREVKPELY-SLGFGEPIPVSAEHNINLDTMLETIIKKLEEK 167 (439)
T ss_dssp H-HHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred c-HHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHHHHhcccc
Confidence 0 1222 3333 45654689999999999999999999988754
No 145
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.49 E-value=1.8e-13 Score=104.13 Aligned_cols=100 Identities=11% Similarity=0.057 Sum_probs=75.4
Q ss_pred CCCcch-hhhh--------hhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCC
Q psy10891 1 MTEGQE-RFTW--------MTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQ 71 (142)
Q Consensus 1 Dt~G~e-~~~~--------~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~ 71 (142)
||||++ ++.. .+..+++.+|++|+|+|++++.++.... ++..+ .++|+++|+||+|+.. .
T Consensus 297 DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~-il~~l---------~~~piivV~NK~DL~~-~ 365 (482)
T 1xzp_A 297 DTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRK-ILERI---------KNKRYLVVINKVDVVE-K 365 (482)
T ss_dssp ESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHH-HHHHH---------TTSSEEEEEEECSSCC-C
T ss_pred ECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHH-HHHHh---------cCCCEEEEEECccccc-c
Confidence 899998 6542 2456889999999999999987776643 33333 3789999999999964 2
Q ss_pred CCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 72 VDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
+..+.+..++. .+ .++++|||+++.|+++++.+|...+..
T Consensus 366 ~~~~~~~~~~~-~~-~~~i~iSAktg~Gi~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 366 INEEEIKNKLG-TD-RHMVKISALKGEGLEKLEESIYRETQE 405 (482)
T ss_dssp CCHHHHHHHHT-CS-TTEEEEEGGGTCCHHHHHHHHHHHTHH
T ss_pred cCHHHHHHHhc-CC-CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34445444432 22 469999999999999999999998764
No 146
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.49 E-value=4.8e-14 Score=103.11 Aligned_cols=108 Identities=12% Similarity=0.142 Sum_probs=82.6
Q ss_pred CCCcchh----hhhhhHhhhc---cCCEEEEEEeCCC---hhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC
Q psy10891 1 MTEGQER----FTWMTRVYYK---DAHGCIIMFDLTN---QNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR 70 (142)
Q Consensus 1 Dt~G~e~----~~~~~~~~~~---~ad~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~ 70 (142)
||||+.. +..++..|++ .+|++|+|+|+++ +.++..+..|+.++..+. ....++|+++|+||+|+..
T Consensus 212 DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~--~~l~~~p~ilV~NK~Dl~~- 288 (342)
T 1lnz_A 212 DLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYN--LRLTERPQIIVANKMDMPE- 288 (342)
T ss_dssp EHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSC--SSTTTSCBCBEEECTTSTT-
T ss_pred cCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhh--hhhcCCCEEEEEECccCCC-
Confidence 7888654 4446566655 4999999999998 778888889998886432 1125799999999999864
Q ss_pred CCCHHHHHHHHHHcCC-ceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 71 QVDINDIECFYKEHNF-IGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 71 ~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
..+....+++.+.. .+++++||+++.|+++++.+|...+.+
T Consensus 289 --~~e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 289 --AAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLEN 330 (342)
T ss_dssp --HHHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred --CHHHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhh
Confidence 12445666666652 358999999999999999999988853
No 147
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.48 E-value=1.3e-13 Score=102.99 Aligned_cols=102 Identities=15% Similarity=0.135 Sum_probs=69.6
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCC----hhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CC--CC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTN----QNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQ--VD 73 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~--~~ 73 (142)
|||||++|...+...+..+|++|+|+|+++ +.+++.+..| ..+ ...|+|+|+||+|+.. .. ..
T Consensus 87 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-~~l---------~~~~iivv~NK~Dl~~~~~~~~~ 156 (408)
T 1s0u_A 87 DSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL-EIL---------GIDKIIIVQNKIDLVDEKQAEEN 156 (408)
T ss_dssp ECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH-HHT---------TCCCEEEEEECTTSSCTTTTTTH
T ss_pred ECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH-HHc---------CCCeEEEEEEccCCCCHHHHHHH
Confidence 899999999988888889999999999995 4455544322 111 2358999999999976 21 22
Q ss_pred HHHHHHHHHHc--CCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 74 INDIECFYKEH--NFIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 74 ~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
.+++..++... ...+++++||+++.|++++++.|...+.
T Consensus 157 ~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 157 YEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 34555555542 2256999999999999999999987654
No 148
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.47 E-value=2.6e-14 Score=101.30 Aligned_cols=102 Identities=21% Similarity=0.150 Sum_probs=76.7
Q ss_pred CCCcchhhhh------hhHhhh--ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CC
Q psy10891 1 MTEGQERFTW------MTRVYY--KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQ 71 (142)
Q Consensus 1 Dt~G~e~~~~------~~~~~~--~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~ 71 (142)
||||+..|.. ++..|+ .++|++++|+|+++... ...|...+... ..+|+++|+||+|+.. +.
T Consensus 56 DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~---~~~~~~~~~~~------~~~p~ilv~NK~Dl~~~~~ 126 (271)
T 3k53_A 56 DLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLMR---NLFLTLELFEM------EVKNIILVLNKFDLLKKKG 126 (271)
T ss_dssp ECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHHH---HHHHHHHHHHT------TCCSEEEEEECHHHHHHHT
T ss_pred eCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcchh---hHHHHHHHHhc------CCCCEEEEEEChhcCcccc
Confidence 8999998877 667777 68999999999988532 22344444311 2399999999999754 22
Q ss_pred CCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 72 VDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
... ....+.+.++ .+++++||++|.|+.++|..+...+..
T Consensus 127 ~~~-~~~~l~~~lg-~~~~~~Sa~~g~gi~~l~~~i~~~~~~ 166 (271)
T 3k53_A 127 AKI-DIKKMRKELG-VPVIPTNAKKGEGVEELKRMIALMAEG 166 (271)
T ss_dssp CCC-CHHHHHHHHS-SCEEECBGGGTBTHHHHHHHHHHHHHT
T ss_pred cHH-HHHHHHHHcC-CcEEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 222 2566777888 579999999999999999999988744
No 149
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.46 E-value=5.9e-13 Score=103.55 Aligned_cols=103 Identities=19% Similarity=0.214 Sum_probs=75.6
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCC---hhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCC---
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTN---QNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVD--- 73 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~--- 73 (142)
||||+++|..++..+++.+|++|+|+|+++ +.|+..+.. +.. .++|+|+++||+|+.. ....
T Consensus 76 DTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~-------~~vPiIVViNKiDl~~~~~~~~~~ 144 (594)
T 1g7s_A 76 DTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM-------YRTPFVVAANKIDRIHGWRVHEGR 144 (594)
T ss_dssp CCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH-------TTCCEEEEEECGGGSTTCCCCTTC
T ss_pred ECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH-------cCCeEEEEecccccccccccccCC
Confidence 899999999999999999999999999999 666654432 211 4789999999999854 1100
Q ss_pred ----------HH----------HHHHHHHHcC--------------CceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 74 ----------IN----------DIECFYKEHN--------------FIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 74 ----------~~----------~~~~~~~~~~--------------~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
.. .+.......+ ..+++.+||++|.|+.+++++|...+...
T Consensus 145 ~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~ 219 (594)
T 1g7s_A 145 PFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY 219 (594)
T ss_dssp CHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred chHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcccc
Confidence 00 1111122222 23799999999999999999999887654
No 150
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.46 E-value=1e-14 Score=112.03 Aligned_cols=104 Identities=13% Similarity=0.113 Sum_probs=76.0
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC--CCCCHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH--RQVDINDIE 78 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~--~~~~~~~~~ 78 (142)
||||+++|..++..++..+|++++|+|+++..+......|. .+. ..++|+|+|+||+|+.. .......+.
T Consensus 58 DTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~-~~~-------~~~vPiIVViNKiDl~~~~~~~v~~~l~ 129 (537)
T 3izy_P 58 DTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQ-HAK-------DAHVPIVLAINKCDKAEADPEKVKKELL 129 (537)
T ss_dssp ECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHH-HHH-------TTTCCEEECCBSGGGTTTSCCSSSSHHH
T ss_pred ECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHH-HHH-------HcCCcEEEEEecccccccchHHHHHHHH
Confidence 89999999999999999999999999999876555544442 221 14789999999999865 111112221
Q ss_pred HH---HHHcC-CceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 79 CF---YKEHN-FIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 79 ~~---~~~~~-~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
.+ +..++ ..+++++||++|.|++++|+.|...+.
T Consensus 130 ~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 130 AYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp HTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred hhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhhh
Confidence 11 11221 247899999999999999999987763
No 151
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.44 E-value=6.8e-14 Score=105.31 Aligned_cols=100 Identities=18% Similarity=0.158 Sum_probs=69.3
Q ss_pred CCCcch--------hhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC
Q psy10891 1 MTEGQE--------RFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV 72 (142)
Q Consensus 1 Dt~G~e--------~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~ 72 (142)
||||++ ++..++..++++||++++|+|++++.++.+ .|+..+. ...++|+++|+||+|+.....
T Consensus 57 DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~l------~~~~~pvilv~NK~D~~~~~~ 128 (436)
T 2hjg_A 57 DTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKIL------YRTKKPVVLAVNKLDNTEMRA 128 (436)
T ss_dssp C---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHH------TTCCSCEEEEEECCCC-----
T ss_pred ECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHHH------HHcCCCEEEEEECccCccchh
Confidence 899986 788888999999999999999998777654 3443332 124789999999999864111
Q ss_pred CHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 73 DINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
....+. ..++.+++++||++|.|+.++++++...+.
T Consensus 129 ---~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 129 ---NIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFK 164 (436)
T ss_dssp ---CCCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHHTGG
T ss_pred ---hHHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHHhcC
Confidence 111122 345446899999999999999999988775
No 152
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.44 E-value=9.3e-14 Score=103.66 Aligned_cols=91 Identities=11% Similarity=0.093 Sum_probs=68.2
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCC-CC---CCHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPH-RQ---VDIN 75 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~-~~---~~~~ 75 (142)
||||+++|...+..++..+|++|+|+|+++...... ..|+..+.. .++| +++|+||+|+.. .. ....
T Consensus 81 DtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt-~~~l~~~~~-------~~ip~iivviNK~Dl~~~~~~~~~~~~ 152 (405)
T 2c78_A 81 DCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ-------VGVPYIVVFMNKVDMVDDPELLDLVEM 152 (405)
T ss_dssp ECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHH-HHHHHHHHH-------TTCCCEEEEEECGGGCCCHHHHHHHHH
T ss_pred ECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHH-HHHHHHHHH-------cCCCEEEEEEECccccCcHHHHHHHHH
Confidence 899999999999999999999999999988654433 445544431 3678 899999999863 11 1123
Q ss_pred HHHHHHHHcCC----ceEEEeeccCCCC
Q psy10891 76 DIECFYKEHNF----IGWTETSTKEGLM 99 (142)
Q Consensus 76 ~~~~~~~~~~~----~~~~~~Sa~~~~~ 99 (142)
++..++..+++ .+++++||+++.|
T Consensus 153 ~~~~~l~~~~~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 153 EVRDLLNQYEFPGDEVPVIRGSALLALE 180 (405)
T ss_dssp HHHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred HHHHHHHHhcccccCCCEEEccHHHhhh
Confidence 45566777664 5799999999987
No 153
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.43 E-value=3.6e-13 Score=101.52 Aligned_cols=98 Identities=16% Similarity=0.148 Sum_probs=69.0
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhh---HH---HHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCCCC--
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNS---FK---NTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPHRQ-- 71 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~-- 71 (142)
|||||++|...+..+++.+|++++|+|+++... |. .....+..+. ..++| +|+|+||+|+....
T Consensus 101 DTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~-------~~~v~~iIvviNK~Dl~~~~~~ 173 (439)
T 3j2k_7 101 DAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAK-------TAGVKHLIVLINKMDDPTVNWS 173 (439)
T ss_pred ECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHH-------HcCCCeEEEEeecCCCcccchH
Confidence 899999999999999999999999999988532 11 1112222221 13577 99999999985311
Q ss_pred -----CCHHHHHHHHHHcCC-----ceEEEeeccCCCCHHHHHH
Q psy10891 72 -----VDINDIECFYKEHNF-----IGWTETSTKEGLMVNDSMK 105 (142)
Q Consensus 72 -----~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~l~~ 105 (142)
...+.+..+++..++ .+++++||++|.|+.++++
T Consensus 174 ~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 174 NERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 122334445555553 4699999999999999765
No 154
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.43 E-value=1.6e-13 Score=102.18 Aligned_cols=103 Identities=12% Similarity=0.075 Sum_probs=75.5
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCC-CC---CCHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPH-RQ---VDIN 75 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~-~~---~~~~ 75 (142)
||||+++|...+..+++.+|++|+|+|+++.......+.| ..+.. .++| +|+++||+|+.. .. ...+
T Consensus 72 DtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~-------~~vp~iivviNK~Dl~~~~~~~~~~~~ 143 (397)
T 1d2e_A 72 DCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ-------IGVEHVVVYVNKADAVQDSEMVELVEL 143 (397)
T ss_dssp ECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH-------TTCCCEEEEEECGGGCSCHHHHHHHHH
T ss_pred ECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH-------cCCCeEEEEEECcccCCCHHHHHHHHH
Confidence 8999999999999999999999999999986444433333 33321 3688 689999999863 11 1123
Q ss_pred HHHHHHHHcCC----ceEEEeeccCCCC----------HHHHHHHHHHHH
Q psy10891 76 DIECFYKEHNF----IGWTETSTKEGLM----------VNDSMKFLLDVL 111 (142)
Q Consensus 76 ~~~~~~~~~~~----~~~~~~Sa~~~~~----------i~~l~~~l~~~~ 111 (142)
++..+++.+++ .+++++||+++.+ +.++++.|...+
T Consensus 144 ~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 144 EIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp HHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 55567777764 4799999999764 778887777655
No 155
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.42 E-value=3.4e-13 Score=100.75 Aligned_cols=102 Identities=13% Similarity=0.133 Sum_probs=73.9
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCC----hhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCC---CC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTN----QNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQ---VD 73 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~---~~ 73 (142)
||||+++|...+...+..+|++++|+|+++ +.+.+.+..| ..+ ...|+|+|+||+|+.... ..
T Consensus 89 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-~~~---------~~~~iivviNK~Dl~~~~~~~~~ 158 (410)
T 1kk1_A 89 DAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL-QII---------GQKNIIIAQNKIELVDKEKALEN 158 (410)
T ss_dssp ECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH-HHH---------TCCCEEEEEECGGGSCHHHHHHH
T ss_pred ECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH-HHc---------CCCcEEEEEECccCCCHHHHHHH
Confidence 899999999988888889999999999995 3455544322 222 235899999999986511 11
Q ss_pred HHHHHHHHHHc--CCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 74 INDIECFYKEH--NFIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 74 ~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
.+++..++... ...+++++||+++.|++++++.|...+.
T Consensus 159 ~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 159 YRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 23334444431 2357999999999999999999987664
No 156
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.42 E-value=9.4e-14 Score=104.55 Aligned_cols=104 Identities=12% Similarity=0.190 Sum_probs=72.9
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCC-CEEEEEeCCCCCCCCC-------
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPI-PCMLLANKCDLPHRQV------- 72 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-p~ilv~nK~D~~~~~~------- 72 (142)
||||+++|...+..+++.+|++|+|+|+++ .+|+....|......+.......++ |+|+|+||+|+.....
T Consensus 90 DtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~ 168 (435)
T 1jny_A 90 DAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKE 168 (435)
T ss_dssp CCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHH
T ss_pred ECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHHHHHH
Confidence 899999999999999999999999999998 6776544333222211100011244 6899999999864111
Q ss_pred CHHHHHHHHHHcCC----ceEEEeeccCCCCHHHHHH
Q psy10891 73 DINDIECFYKEHNF----IGWTETSTKEGLMVNDSMK 105 (142)
Q Consensus 73 ~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~l~~ 105 (142)
..+++..++..+++ .+++++||++|.|+.+++.
T Consensus 169 ~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 169 IVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp HHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred HHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 13445666777663 5699999999999976554
No 157
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.41 E-value=2.4e-13 Score=96.56 Aligned_cols=107 Identities=7% Similarity=-0.038 Sum_probs=72.3
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHH---HHHHHHHHHHHhcccC-CCCCCCEEEEEeC-CCCCCCCCCHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFK---NTLKWKKDVDLKCTLS-DGSPIPCMLLANK-CDLPHRQVDIN 75 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~---~~~~~~~~~~~~~~~~-~~~~~p~ilv~nK-~D~~~~~~~~~ 75 (142)
|.+||++++.+|+.||.++|++|||+|++|...++ .+..+...+ ... ...++|++|.+|| .|+.. ..+..
T Consensus 193 ~~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL----~e~~~l~~apLLVfANKkQDlp~-Ams~~ 267 (312)
T 3l2o_B 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMT----DPAFGSSGRPLLVLSCISQGDVK-RMPCF 267 (312)
T ss_dssp ----CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHH----CHHHHCTTCCEEEEEEESSTTSC-BCCHH
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHh----cchhhcCCCeEEEEeCCcccccC-CCCHH
Confidence 35799999999999999999999999999875433 222111111 111 1258999999997 57754 45555
Q ss_pred HHHHHHHHc--C-CceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 76 DIECFYKEH--N-FIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 76 ~~~~~~~~~--~-~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
++....... . .-.+..|||.+|+|+.+.++||...+.
T Consensus 268 EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~ 307 (312)
T 3l2o_B 268 YLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE 307 (312)
T ss_dssp HHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred HHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence 555443221 1 123778999999999999999998774
No 158
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.40 E-value=2e-12 Score=95.40 Aligned_cols=96 Identities=15% Similarity=0.148 Sum_probs=75.3
Q ss_pred chhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH----
Q psy10891 5 QERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF---- 80 (142)
Q Consensus 5 ~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~---- 80 (142)
+++|..+++.+++.++++++|+|++++. ..|...+.+.. .+.|+++|+||+|+.+.....+....+
T Consensus 56 ~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-----~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~ 125 (368)
T 3h2y_A 56 DDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-----GNNKVLLVGNKADLIPKSVKHDKVKHWMRYS 125 (368)
T ss_dssp CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-----SSSCEEEEEECGGGSCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-----CCCcEEEEEEChhcCCcccCHHHHHHHHHHH
Confidence 6889999999999999999999999863 35666665443 478999999999997644444444444
Q ss_pred HHHcCCc--eEEEeeccCCCCHHHHHHHHHHH
Q psy10891 81 YKEHNFI--GWTETSTKEGLMVNDSMKFLLDV 110 (142)
Q Consensus 81 ~~~~~~~--~~~~~Sa~~~~~i~~l~~~l~~~ 110 (142)
++..++. +++.+||+++.|+++++..+...
T Consensus 126 ~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~ 157 (368)
T 3h2y_A 126 AKQLGLKPEDVFLISAAKGQGIAELADAIEYY 157 (368)
T ss_dssp HHHTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence 5666752 68999999999999999988654
No 159
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.39 E-value=6.3e-13 Score=100.70 Aligned_cols=99 Identities=15% Similarity=0.132 Sum_probs=64.9
Q ss_pred CCCcchhhhhhhH--------hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CC
Q psy10891 1 MTEGQERFTWMTR--------VYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQ 71 (142)
Q Consensus 1 Dt~G~e~~~~~~~--------~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~ 71 (142)
||||+..+...++ .++..+|++++|+|++++.+... ..|+..+ ...|+++|+||+|+.. ..
T Consensus 278 DT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l---------~~~piivV~NK~Dl~~~~~ 347 (462)
T 3geh_A 278 DTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQV---------KHRPLILVMNKIDLVEKQL 347 (462)
T ss_dssp C--------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHH---------TTSCEEEEEECTTSSCGGG
T ss_pred ECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhc---------cCCcEEEEEECCCCCcchh
Confidence 8999877665433 36789999999999998776655 4566666 3579999999999976 22
Q ss_pred CCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 72 VDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
+. ....+. ...+++++||+++.|+++++..|...+...
T Consensus 348 ~~--~~~~~~---~~~~~i~iSAktg~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 348 IT--SLEYPE---NITQIVHTAAAQKQGIDSLETAILEIVQTG 385 (462)
T ss_dssp ST--TCCCCT---TCCCEEEEBTTTTBSHHHHHHHHHHHHTTS
T ss_pred hH--HHHHhc---cCCcEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 21 111111 225699999999999999999999987543
No 160
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.39 E-value=8.6e-13 Score=97.45 Aligned_cols=103 Identities=8% Similarity=-0.065 Sum_probs=75.3
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCE-EEEEe-CCCCCCCC-CC--HH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPC-MLLAN-KCDLPHRQ-VD--IN 75 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~n-K~D~~~~~-~~--~~ 75 (142)
||||+++|...+..+++.+|++|+|+| +.. .+.....|+..+.. .++|. |+++| |+|+ ... +. .+
T Consensus 66 DtPGh~~f~~~~~~~~~~aD~ailVvd-~~g-~~~qt~e~~~~~~~-------~~i~~~ivvvNNK~Dl-~~~~~~~~~~ 135 (370)
T 2elf_A 66 DAHSYPKTLKSLITALNISDIAVLCIP-PQG-LDAHTGECIIALDL-------LGFKHGIIALTRSDST-HMHAIDELKA 135 (370)
T ss_dssp ECTTTTTCHHHHHHHHHTCSEEEEEEC-TTC-CCHHHHHHHHHHHH-------TTCCEEEEEECCGGGS-CHHHHHHHHH
T ss_pred ECCChHHHHHHHHHHHHHCCEEEEEEc-CCC-CcHHHHHHHHHHHH-------cCCCeEEEEEEeccCC-CHHHHHHHHH
Confidence 899999999888888999999999999 543 33344555544431 35787 89999 9998 511 11 13
Q ss_pred HHHHHHHHcC--CceEEE--eeccC---CCCHHHHHHHHHHHHHH
Q psy10891 76 DIECFYKEHN--FIGWTE--TSTKE---GLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 76 ~~~~~~~~~~--~~~~~~--~Sa~~---~~~i~~l~~~l~~~~~~ 113 (142)
++..++...+ ..++++ +||++ +.|++++++.|...+..
T Consensus 136 ~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 136 KLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp HHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhccc
Confidence 4444444433 257999 99999 99999999999988754
No 161
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.38 E-value=4.3e-13 Score=96.51 Aligned_cols=103 Identities=17% Similarity=0.119 Sum_probs=73.2
Q ss_pred CCCcch-h--------hhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-C
Q psy10891 1 MTEGQE-R--------FTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-R 70 (142)
Q Consensus 1 Dt~G~e-~--------~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~ 70 (142)
||||+. . +......+++.+|++++|+|.++ .+.. ..|+..... ..+.|+++|+||+|+.. +
T Consensus 62 DTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~--~~~i~~~l~------~~~~P~ilvlNK~D~~~~~ 132 (301)
T 1ega_A 62 DTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WTPD--DEMVLNKLR------EGKAPVILAVNKVDNVQEK 132 (301)
T ss_dssp SSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHH--HHHHHHHHH------SSSSCEEEEEESTTTCCCH
T ss_pred ECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHH--HHHHHHHHH------hcCCCEEEEEECcccCccH
Confidence 899987 3 33445677889999999999977 3322 234433221 14789999999999864 2
Q ss_pred CCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 71 QVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
....+.+..+...+++.+++++||+++.|++++++.+...+.
T Consensus 133 ~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 133 ADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp HHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCC
Confidence 222344555555566556999999999999999999987653
No 162
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.38 E-value=9.8e-13 Score=100.17 Aligned_cols=96 Identities=17% Similarity=0.100 Sum_probs=63.3
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHH------HHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKN------TLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVD 73 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~------~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~ 73 (142)
||||+++|...+..+++.+|++|+|+|++++.++.. ....+.... .. .-.|+|+|+||+|+.+ ....
T Consensus 117 DTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~-~~-----~~~~iIvviNK~Dl~~~~~~~ 190 (483)
T 3p26_A 117 DAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLAS-SL-----GIHNLIIAMNKMDNVDWSQQR 190 (483)
T ss_dssp CCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHH-HT-----TCCCEEEEEECGGGGTTCHHH
T ss_pred ECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHH-Hc-----CCCcEEEEEECcCcccchHHH
Confidence 899999999999999999999999999998644321 111111111 11 2346999999999865 1111
Q ss_pred ----HHHHHHHHHHcCC----ceEEEeeccCCCCHHH
Q psy10891 74 ----INDIECFYKEHNF----IGWTETSTKEGLMVND 102 (142)
Q Consensus 74 ----~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~ 102 (142)
.+.+..++...++ .+++++||++|.|+.+
T Consensus 191 ~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 191 FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred HHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 2223333444443 5789999999999875
No 163
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.36 E-value=7.5e-14 Score=106.46 Aligned_cols=101 Identities=16% Similarity=0.181 Sum_probs=69.8
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC---CCCHH--
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR---QVDIN-- 75 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~---~~~~~-- 75 (142)
|||||+.|..++..++..+|++++|+|+++.......+.| ..+. ..++|+|+++||+|+... .+...
T Consensus 57 DTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l-~~~~-------~~~vPiIVviNKiDl~~~~~~~v~~~l~ 128 (501)
T 1zo1_I 57 DTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAI-QHAK-------AAQVPVVVAVNKIDKPEADPDRVKNELS 128 (501)
T ss_dssp CCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHH-HHHH-------HTTCCEEEEEECSSSSTTCCCCTTCCCC
T ss_pred ECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHH-HHHH-------hcCceEEEEEEeccccccCHHHHHHHHH
Confidence 8999999999999999999999999999884222222222 2221 147899999999998641 11000
Q ss_pred HHHHHHHHcC-CceEEEeeccCCCCHHHHHHHHHH
Q psy10891 76 DIECFYKEHN-FIGWTETSTKEGLMVNDSMKFLLD 109 (142)
Q Consensus 76 ~~~~~~~~~~-~~~~~~~Sa~~~~~i~~l~~~l~~ 109 (142)
....++..++ ..+++++||++|.|++++|+.|..
T Consensus 129 ~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 129 QYGILPEEWGGESQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp CCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred HhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence 0000112222 257999999999999999999864
No 164
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.35 E-value=9.3e-12 Score=93.75 Aligned_cols=106 Identities=15% Similarity=0.150 Sum_probs=71.1
Q ss_pred CCCcchhhhhhh------------HhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC
Q psy10891 1 MTEGQERFTWMT------------RVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP 68 (142)
Q Consensus 1 Dt~G~e~~~~~~------------~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 68 (142)
||||+.++..+. ..+++.+|++++|+|+++..+..+. .+...+. ..++|+++|+||+|+.
T Consensus 234 Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~-------~~~~~~ilv~NK~Dl~ 305 (439)
T 1mky_A 234 DTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLME-------RRGRASVVVFNKWDLV 305 (439)
T ss_dssp SCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHH-------HTTCEEEEEEECGGGS
T ss_pred ECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHH-------HcCCCEEEEEECccCC
Confidence 899986544321 3467899999999999987666542 2333332 1478999999999987
Q ss_pred C-CCCCHHHHH-HHHHHc---CCceEEEeeccCCCCHHHHHHHHHHHHHHH
Q psy10891 69 H-RQVDINDIE-CFYKEH---NFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 69 ~-~~~~~~~~~-~~~~~~---~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 114 (142)
+ +....+... .+...+ +..+++++||++|.|++++|..+...+...
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 306 VHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp TTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 5 333333332 222332 345799999999999999999999877664
No 165
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.35 E-value=3.1e-12 Score=96.27 Aligned_cols=97 Identities=19% Similarity=0.083 Sum_probs=69.8
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCC-CEEEEEeCCCCCCCC-C----CH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPI-PCMLLANKCDLPHRQ-V----DI 74 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-p~ilv~nK~D~~~~~-~----~~ 74 (142)
||||+++|...+..++..+|++|+|+|+++...... ..|+..+.. .++ |+|+|+||+|+.... . ..
T Consensus 110 DtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt-~~~l~~~~~-------~~~~~iIvviNK~Dl~~~~~~~~~~i~ 181 (434)
T 1zun_B 110 DTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSYIASL-------LGIKHIVVAINKMDLNGFDERVFESIK 181 (434)
T ss_dssp ECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHHHHHH-------TTCCEEEEEEECTTTTTSCHHHHHHHH
T ss_pred ECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH-------cCCCeEEEEEEcCcCCcccHHHHHHHH
Confidence 899999999999999999999999999998643332 334433321 244 599999999986411 0 12
Q ss_pred HHHHHHHHHcC--C--ceEEEeeccCCCCHHHHHH
Q psy10891 75 NDIECFYKEHN--F--IGWTETSTKEGLMVNDSMK 105 (142)
Q Consensus 75 ~~~~~~~~~~~--~--~~~~~~Sa~~~~~i~~l~~ 105 (142)
+++..+++.++ . .+++++||++|.|+.+++.
T Consensus 182 ~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 182 ADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp HHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred HHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence 34455566666 2 5699999999999988543
No 166
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.34 E-value=2.1e-13 Score=103.52 Aligned_cols=100 Identities=15% Similarity=0.209 Sum_probs=58.7
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChh---hHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCCCCCC---
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQN---SFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPHRQVD--- 73 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~--- 73 (142)
|||||++|...+..++..+|++|+|+|+++.. +|.....|...+... ...++| +|+|+||+|+......
T Consensus 127 DtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~----~~~~vp~iivviNK~Dl~~~~~~~~~ 202 (467)
T 1r5b_A 127 DAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLA----RTQGINHLVVVINKMDEPSVQWSEER 202 (467)
T ss_dssp CCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH----HHTTCSSEEEEEECTTSTTCSSCHHH
T ss_pred ECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHH----HHcCCCEEEEEEECccCCCccccHHH
Confidence 89999999999999999999999999999862 332211222222110 013677 9999999998541111
Q ss_pred ----HHHHHHHHHHc-CC-----ceEEEeeccCCCCHHHHH
Q psy10891 74 ----INDIECFYKEH-NF-----IGWTETSTKEGLMVNDSM 104 (142)
Q Consensus 74 ----~~~~~~~~~~~-~~-----~~~~~~Sa~~~~~i~~l~ 104 (142)
..++..++... ++ .+++++||++|.|+.+++
T Consensus 203 ~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 203 YKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred HHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 22355566655 43 469999999999998766
No 167
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.32 E-value=4.8e-12 Score=93.42 Aligned_cols=98 Identities=16% Similarity=0.183 Sum_probs=74.7
Q ss_pred cchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH---
Q psy10891 4 GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF--- 80 (142)
Q Consensus 4 G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~--- 80 (142)
.|++|..+++.++.+++++++|+|++++.+ .|...+.+.. .+.|+++|+||+|+.+.....+....|
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l~~ 126 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWMRR 126 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHHHH
Confidence 488999999999999999999999999764 3544444333 478999999999997644444444444
Q ss_pred -HHHcCC--ceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 81 -YKEHNF--IGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 81 -~~~~~~--~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
++..+. .+++.+||+++.|+++++..+....
T Consensus 127 ~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 127 MAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 555665 2589999999999999999887654
No 168
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.32 E-value=1.7e-12 Score=106.50 Aligned_cols=103 Identities=13% Similarity=0.137 Sum_probs=75.1
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCCC-C---CCHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPHR-Q---VDIN 75 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~-~---~~~~ 75 (142)
|||||++|...+..++..+|++|+|+|+++....+. ..|+..+.. .++| +|+|+||+|+... . ...+
T Consensus 365 DTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QT-rEhL~ll~~-------lgIP~IIVVINKiDLv~d~e~le~i~e 436 (1289)
T 3avx_A 365 DCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLGRQ-------VGVPYIIVFLNKCDMVDDEELLELVEM 436 (1289)
T ss_dssp ECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTH-HHHHHHHHH-------HTCSCEEEEEECCTTCCCHHHHHHHHH
T ss_pred ECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHH-HHHHHHHHH-------cCCCeEEEEEeecccccchhhHHHHHH
Confidence 899999999999999999999999999998643333 334444321 2688 7999999999641 1 1123
Q ss_pred HHHHHHHHcCC----ceEEEeeccCC--------CCHHHHHHHHHHHH
Q psy10891 76 DIECFYKEHNF----IGWTETSTKEG--------LMVNDSMKFLLDVL 111 (142)
Q Consensus 76 ~~~~~~~~~~~----~~~~~~Sa~~~--------~~i~~l~~~l~~~~ 111 (142)
++..++..+++ .+++++||++| .|+.++++.|...+
T Consensus 437 Ei~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 437 EVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp HHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 45566777663 57999999999 35777777776544
No 169
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.31 E-value=1.5e-11 Score=90.61 Aligned_cols=110 Identities=15% Similarity=0.031 Sum_probs=75.8
Q ss_pred CCCcc---------hhhhhhhHhhhccCCEEEEEEeCCChh--hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 1 MTEGQ---------ERFTWMTRVYYKDAHGCIIMFDLTNQN--SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 1 Dt~G~---------e~~~~~~~~~~~~ad~ii~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
||+|. +.|..+++ .+..+|++++|+|++++. +......|...+... ...+.|+|+|+||+|+..
T Consensus 232 DT~G~i~~lp~~lve~f~~tl~-~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l----~~~~~p~ilV~NK~Dl~~ 306 (364)
T 2qtf_A 232 DTVGFIRGIPPQIVDAFFVTLS-EAKYSDALILVIDSTFSENLLIETLQSSFEILREI----GVSGKPILVTLNKIDKIN 306 (364)
T ss_dssp ECCCBCSSCCGGGHHHHHHHHH-GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHH----TCCSCCEEEEEECGGGCC
T ss_pred eCCCchhcCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHh----CcCCCCEEEEEECCCCCC
Confidence 78996 45655555 578999999999999876 555555555444321 225789999999999865
Q ss_pred CCCC--HHHHHHHHHHc-C-CceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 70 RQVD--INDIECFYKEH-N-FIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 70 ~~~~--~~~~~~~~~~~-~-~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
.... ...+..++..+ . ..+++++||+++.|+++++..|...+....
T Consensus 307 ~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 307 GDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQLS 356 (364)
T ss_dssp SCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcccC
Confidence 2210 11222233444 2 135889999999999999999998877653
No 170
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.31 E-value=8e-13 Score=94.38 Aligned_cols=105 Identities=17% Similarity=0.062 Sum_probs=72.2
Q ss_pred CCCcch-------------hhhhhhHhhhccCCEEE-EEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCC
Q psy10891 1 MTEGQE-------------RFTWMTRVYYKDAHGCI-IMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCD 66 (142)
Q Consensus 1 Dt~G~e-------------~~~~~~~~~~~~ad~ii-~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 66 (142)
||||+. .+..++..|++.++.++ +|+|+++..+......|+..+. ..+.|+++|+||+|
T Consensus 131 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~-------~~~~~~i~V~NK~D 203 (299)
T 2aka_B 131 DLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD-------PQGQRTIGVITKLD 203 (299)
T ss_dssp ECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHC-------TTCSSEEEEEECGG
T ss_pred eCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhC-------CCCCeEEEEEEccc
Confidence 899963 57778888999998777 7999987655444334555552 24789999999999
Q ss_pred CCC-CCCCHHHHHHHHHH--cCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 67 LPH-RQVDINDIECFYKE--HNFIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 67 ~~~-~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
+.. .....+.+...... .++.+++++||+++.|+++++..+.....
T Consensus 204 l~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~ 252 (299)
T 2aka_B 204 LMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERK 252 (299)
T ss_dssp GSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHH
T ss_pred cCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHH
Confidence 875 22222222210001 13346889999999999999999987443
No 171
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.31 E-value=3e-12 Score=96.91 Aligned_cols=95 Identities=12% Similarity=0.053 Sum_probs=68.2
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChh---hH----HHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCC-CC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQN---SF----KNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPH-RQ 71 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~---s~----~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~-~~ 71 (142)
|||||++|...+..++..+|++|+|+|+++.. +| ...+.| ..+.. .++| +|+|+||+|+.. ..
T Consensus 91 DtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~-~~~~~-------~~v~~iivviNK~Dl~~~~~ 162 (458)
T 1f60_A 91 DAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHA-LLAFT-------LGVRQLIVAVNKMDSVKWDE 162 (458)
T ss_dssp ECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHH-HHHHH-------TTCCEEEEEEECGGGGTTCH
T ss_pred ECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHH-HHHHH-------cCCCeEEEEEEccccccCCH
Confidence 89999999999999999999999999999763 22 222222 22211 3566 899999999863 11
Q ss_pred ----CCHHHHHHHHHHcCC----ceEEEeeccCCCCHHHH
Q psy10891 72 ----VDINDIECFYKEHNF----IGWTETSTKEGLMVNDS 103 (142)
Q Consensus 72 ----~~~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~l 103 (142)
...+++..++..+++ .+++++||++|.|+.++
T Consensus 163 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 163 SRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred HHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 122345556666664 57999999999998754
No 172
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.30 E-value=3.3e-12 Score=85.48 Aligned_cols=69 Identities=22% Similarity=0.259 Sum_probs=56.3
Q ss_pred CCCcchhhhhhhHhhhcc----CCEEEEEEeCC-ChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKD----AHGCIIMFDLT-NQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~----ad~ii~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
||||++.|...+..++.+ +|++++|||++ ++.++.....|+..+..........++|+++|+||+|+..
T Consensus 97 Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 170 (193)
T 2ged_A 97 DFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFT 170 (193)
T ss_dssp EETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred ECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcC
Confidence 899999999988888876 89999999999 8899999888887775322100225799999999999976
No 173
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.29 E-value=1.7e-11 Score=96.54 Aligned_cols=60 Identities=13% Similarity=0.085 Sum_probs=48.2
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP 68 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 68 (142)
||||+++|...+..+++.+|++++|+|+++....... .|+..+.. .++|+|+|+||+|+.
T Consensus 80 DTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~-------~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 80 DAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER-------LGLPRMVVVTKLDKG 139 (665)
T ss_dssp ECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH-------TTCCEEEEEECGGGC
T ss_pred eCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH-------ccCCEEEEecCCchh
Confidence 8999999999999999999999999999876554443 34344321 478999999999985
No 174
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.28 E-value=4.4e-12 Score=95.96 Aligned_cols=100 Identities=17% Similarity=0.115 Sum_probs=70.0
Q ss_pred CCCc--------chhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC
Q psy10891 1 MTEG--------QERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV 72 (142)
Q Consensus 1 Dt~G--------~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~ 72 (142)
|||| ++++..++..+++++|++|||+|..+..+..+ .|+..+. ...++|+++|+||+|+....
T Consensus 77 DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d--~~l~~~l------~~~~~pvilV~NK~D~~~~~- 147 (456)
T 4dcu_A 77 DTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKIL------YRTKKPVVLAVNKLDNTEMR- 147 (456)
T ss_dssp CCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH--HHHHHHH------TTCCSCEEEEEECC-------
T ss_pred ECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH--HHHHHHH------HHcCCCEEEEEECccchhhh-
Confidence 8999 99999999999999999999999887544333 3443333 12579999999999985411
Q ss_pred CHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 73 DINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
.....+ ...++..++.+||++|.|+.++++.+...+.
T Consensus 148 --~~~~e~-~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 148 --ANIYDF-YSLGFGEPYPISGTHGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp -----CCS-GGGSSSSEEECCTTTCTTHHHHHHHHHTTGG
T ss_pred --hhHHHH-HHcCCCceEEeecccccchHHHHHHHHhhcc
Confidence 111111 1234445789999999999999999987664
No 175
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.25 E-value=4.9e-11 Score=94.33 Aligned_cols=61 Identities=23% Similarity=0.337 Sum_probs=52.5
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
||||+.+|...+..+++.+|++|+|+|+++..++.....|..... .++|+++|+||+|+..
T Consensus 83 DTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~--------~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 83 DTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK--------YKVPRIAFANKMDKTG 143 (691)
T ss_dssp CCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--------TTCCEEEEEECTTSTT
T ss_pred ECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHH--------cCCCEEEEEECCCccc
Confidence 899999999999999999999999999999877777666654332 4799999999999864
No 176
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.21 E-value=1.3e-10 Score=92.18 Aligned_cols=61 Identities=16% Similarity=0.243 Sum_probs=50.5
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
||||+.+|...+..+++.+|++|+|+|+++..+......|..... .++|+++|+||+|+..
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~--------~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANK--------YKVPRIAFVNKMDRMG 148 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHH--------cCCCEEEEEeCCCccc
Confidence 899999999999999999999999999998766665555533321 4799999999999854
No 177
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.21 E-value=8e-12 Score=97.57 Aligned_cols=96 Identities=19% Similarity=0.162 Sum_probs=65.6
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChh---hH---HHHHHHHHHHHHhcccCCCCCC-CEEEEEeCCCCCC-CCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQN---SF---KNTLKWKKDVDLKCTLSDGSPI-PCMLLANKCDLPH-RQV 72 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~~~~-p~ilv~nK~D~~~-~~~ 72 (142)
||||+++|...+..+++.+|++|+|+|++++. ++ ......+..+. ..++ |+|+|+||+|+.. ...
T Consensus 251 DTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~-------~lgi~~iIVVvNKiDl~~~~~~ 323 (611)
T 3izq_1 251 DAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLAS-------SLGIHNLIIAMNKMDNVDWSQQ 323 (611)
T ss_dssp ECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHH-------TTTCCEEEEEEECTTTTTTCHH
T ss_pred ECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHH-------HcCCCeEEEEEecccccchhHH
Confidence 89999999999999999999999999998742 11 01111111111 1244 4999999999865 111
Q ss_pred C----HHHHHHHHHHcCC----ceEEEeeccCCCCHHHH
Q psy10891 73 D----INDIECFYKEHNF----IGWTETSTKEGLMVNDS 103 (142)
Q Consensus 73 ~----~~~~~~~~~~~~~----~~~~~~Sa~~~~~i~~l 103 (142)
. ...+..++...++ .++++|||++|.|+.++
T Consensus 324 ~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 324 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 1 2334444555553 47999999999999876
No 178
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.18 E-value=1.9e-10 Score=88.49 Aligned_cols=61 Identities=20% Similarity=0.176 Sum_probs=47.5
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
||||+++|...+..+++.+|++|+|+|+++...... ..++... ...++|+++++||+|+..
T Consensus 88 DTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~-------~~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 88 DTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVT-------RLRDTPILTFMNKLDRDI 148 (529)
T ss_dssp CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHH-------TTTTCCEEEEEECTTSCC
T ss_pred ECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHH-------HHcCCCEEEEEcCcCCcc
Confidence 899999999999999999999999999988643322 2222222 224789999999999864
No 179
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.18 E-value=2.2e-11 Score=85.50 Aligned_cols=110 Identities=13% Similarity=0.059 Sum_probs=69.0
Q ss_pred CCCcchhhhh-----------hhHhhhccCCEEEEEEeCCChhhH-HHHHHHHHHHHHhcccCCCCCCCEEEEEe-CCCC
Q psy10891 1 MTEGQERFTW-----------MTRVYYKDAHGCIIMFDLTNQNSF-KNTLKWKKDVDLKCTLSDGSPIPCMLLAN-KCDL 67 (142)
Q Consensus 1 Dt~G~e~~~~-----------~~~~~~~~ad~ii~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~p~ilv~n-K~D~ 67 (142)
||||+..+.. ....+++++|++++|+|+++.... ..+..|+..+.. .....|+++|+| |+|+
T Consensus 77 DTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~-----~~~~~~~i~vv~nK~Dl 151 (260)
T 2xtp_A 77 DTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFG-----EDAMGHTIVLFTHKEDL 151 (260)
T ss_dssp ECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHC-----GGGGGGEEEEEECGGGG
T ss_pred ECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhC-----chhhccEEEEEEccccc
Confidence 8999876532 233477899999999999863222 122233333320 011456666666 9998
Q ss_pred CCCCCCH-------HHHHHHHHHcCCc--eE--EEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 68 PHRQVDI-------NDIECFYKEHNFI--GW--TETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 68 ~~~~~~~-------~~~~~~~~~~~~~--~~--~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
....+.. ..+..++...+.. ++ +++||+++.|++++|..|...+....
T Consensus 152 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 152 NGGSLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp TTCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCccHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence 6422111 2244466665532 12 68999999999999999999887643
No 180
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.17 E-value=1.5e-12 Score=95.93 Aligned_cols=104 Identities=17% Similarity=0.177 Sum_probs=55.3
Q ss_pred CCCcc-------hhhhhhhH-------hhhccCC-------------EEEEEEeCCChhhHHHHH-HHHHHHHHhcccCC
Q psy10891 1 MTEGQ-------ERFTWMTR-------VYYKDAH-------------GCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSD 52 (142)
Q Consensus 1 Dt~G~-------e~~~~~~~-------~~~~~ad-------------~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~ 52 (142)
||||+ +.|..++. .|+++++ +++++++.. ..++..+. .|+..+.
T Consensus 101 DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l~------- 172 (361)
T 2qag_A 101 DTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAIH------- 172 (361)
T ss_dssp C--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHTC-------
T ss_pred EeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHhc-------
Confidence 89999 88888886 7776554 455555431 23344433 4544441
Q ss_pred CCCCCEEEEEeCCCCCC-CCCCH--HHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 53 GSPIPCMLLANKCDLPH-RQVDI--NDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 53 ~~~~p~ilv~nK~D~~~-~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
.++|+|+|+||+|+.. +.+.. +.+..++..++ .+++++||+++.+ ++.|..+...+.+.-
T Consensus 173 -~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~-i~~~~~Sa~~~~~-~e~~~~l~~~i~~~i 235 (361)
T 2qag_A 173 -NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHN-IKIYHLPDAESDE-DEDFKEQTRLLKASI 235 (361)
T ss_dssp -S-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC--CCSCCCC----------CHHHHHHHHHTC
T ss_pred -cCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCC-CCEEeCCCcCCCc-chhHHHHHHHHHhcC
Confidence 5799999999999875 22222 35555666666 4699999999999 888989888887654
No 181
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.15 E-value=2.7e-10 Score=90.14 Aligned_cols=61 Identities=18% Similarity=0.270 Sum_probs=51.8
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
||||+.+|...+..+++.+|++|+|+|+++..+......|..... .++|+++|+||+|+..
T Consensus 81 DTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~--------~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 81 DTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATT--------YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp CCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHH--------TTCCEEEEEECTTSTT
T ss_pred ECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHH--------cCCCEEEEEECCCccc
Confidence 899999999999999999999999999998877777666644321 4789999999999864
No 182
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.13 E-value=2.4e-12 Score=100.16 Aligned_cols=90 Identities=17% Similarity=0.103 Sum_probs=55.9
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCCh----------hhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQ----------NSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPH 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~ 69 (142)
||||+++|...+..+++.+|++|+|+|++++ .+... + ..+. . .++| +|+|+||+|+..
T Consensus 261 DTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~---l-~~~~-~------lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 261 DAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREH---A-YLLR-A------LGISEIVVSVNKLDLMS 329 (592)
T ss_dssp EEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHH---H-HHHH-H------SSCCCEEEEEECGGGGT
T ss_pred ECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHH---H-HHHH-H------cCCCeEEEEEecccccc
Confidence 8999999999999999999999999999853 22222 1 1121 1 2565 999999999854
Q ss_pred -CC-C---CHHHHHHHH-HHcCC----ceEEEeeccCCCCHH
Q psy10891 70 -RQ-V---DINDIECFY-KEHNF----IGWTETSTKEGLMVN 101 (142)
Q Consensus 70 -~~-~---~~~~~~~~~-~~~~~----~~~~~~Sa~~~~~i~ 101 (142)
.. . ....+..++ ...++ .+++++||++|.|+.
T Consensus 330 ~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp TCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred ccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 11 0 112233333 34454 369999999999997
No 183
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.13 E-value=9.6e-11 Score=92.74 Aligned_cols=106 Identities=15% Similarity=0.158 Sum_probs=74.7
Q ss_pred CCCcchhh---hhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHH-
Q psy10891 1 MTEGQERF---TWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDIN- 75 (142)
Q Consensus 1 Dt~G~e~~---~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~- 75 (142)
||||.... ...+..|+.++|++++|+|++++.+......|...+. ..+.|+++|+||+|+.. ..+..+
T Consensus 180 DTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~-------~~~~~iiiVlNK~Dl~~~~~~~~ee 252 (695)
T 2j69_A 180 DSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIK-------GRGLTVFFLVNAWDQVRESLIDPDD 252 (695)
T ss_dssp ECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTT-------TSCCCEEEEEECGGGGGGGCSSTTC
T ss_pred ECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHH-------hhCCCEEEEEECcccccccccChhh
Confidence 89997663 3566788999999999999998888777666655442 13678999999999864 211111
Q ss_pred ---------HHHHH----HHHc-C-------CceEEEeecc--------------CCCCHHHHHHHHHHHHHH
Q psy10891 76 ---------DIECF----YKEH-N-------FIGWTETSTK--------------EGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 76 ---------~~~~~----~~~~-~-------~~~~~~~Sa~--------------~~~~i~~l~~~l~~~~~~ 113 (142)
.+... ...+ + ..++++|||+ ++.|+.+++..|...+..
T Consensus 253 ~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 253 VEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence 11111 1111 1 1358999999 999999999999887754
No 184
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.12 E-value=2e-10 Score=77.75 Aligned_cols=102 Identities=16% Similarity=0.181 Sum_probs=70.1
Q ss_pred CCCcch----------hhhhhhHhhh---ccCCEEEEEEeCCChhhHHH--HHHHHHHHHHhcccCCCCCCCEEEEEeCC
Q psy10891 1 MTEGQE----------RFTWMTRVYY---KDAHGCIIMFDLTNQNSFKN--TLKWKKDVDLKCTLSDGSPIPCMLLANKC 65 (142)
Q Consensus 1 Dt~G~e----------~~~~~~~~~~---~~ad~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 65 (142)
||||+. .|......++ ..++++++|+|++++.++.. +..|+.. .+.|+++|+||+
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~----------~~~~~~~v~nK~ 147 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD----------SNIAVLVLLTKA 147 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH----------TTCCEEEEEECG
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH----------cCCCeEEEEecc
Confidence 789973 4555555555 47899999999988765532 2333322 368999999999
Q ss_pred CCCCC---CCCHHHHHHHHHHcC-CceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 66 DLPHR---QVDINDIECFYKEHN-FIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 66 D~~~~---~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
|+... ......+..++...+ ...++++||+++.++++++..|.+.+.
T Consensus 148 D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 148 DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 98651 111234444454444 345789999999999999999887753
No 185
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.11 E-value=5.7e-10 Score=77.36 Aligned_cols=109 Identities=10% Similarity=0.048 Sum_probs=70.5
Q ss_pred CCCc-----------chhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 1 MTEG-----------QERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 1 Dt~G-----------~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
|||| ++.+...+..++.++|++|+|+|+++..... ..|+..+..... .....|+++|+||+|+..
T Consensus 84 DTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~--~~~l~~~~~~~~--~~~~~~~iiv~nK~D~~~ 159 (239)
T 3lxx_A 84 DTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEE--HKATEKILKMFG--ERARSFMILIFTRKDDLG 159 (239)
T ss_dssp ECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHH--HHHHHHHHHHHH--HHHGGGEEEEEECGGGC-
T ss_pred ECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHH--HHHHHHHHHHhh--hhccceEEEEEeCCccCC
Confidence 8999 5566677777788999999999987543321 223333321110 002469999999999865
Q ss_pred -CCCC------HHHHHHHHHHcCCceEEEeeccCC-----CCHHHHHHHHHHHHHHH
Q psy10891 70 -RQVD------INDIECFYKEHNFIGWTETSTKEG-----LMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 70 -~~~~------~~~~~~~~~~~~~~~~~~~Sa~~~-----~~i~~l~~~l~~~~~~~ 114 (142)
..+. .+.+..+++.++.. ++.++...+ .++.++|..+...+.++
T Consensus 160 ~~~~~~~i~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~ 215 (239)
T 3lxx_A 160 DTNLHDYLREAPEDIQDLMDIFGDR-YCALNNKATGAEQEAQRAQLLGLIQRVVREN 215 (239)
T ss_dssp -----------CHHHHHHHHHHSSS-EEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccHHHHHHhchHHHHHHHHHcCCE-EEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence 2222 24577778888843 777766643 68899999888777554
No 186
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.04 E-value=7.1e-11 Score=83.73 Aligned_cols=84 Identities=17% Similarity=0.145 Sum_probs=45.6
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC-C--CCHHHHHHHHHHcCCceEEEeecc
Q psy10891 19 AHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR-Q--VDINDIECFYKEHNFIGWTETSTK 95 (142)
Q Consensus 19 ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~--~~~~~~~~~~~~~~~~~~~~~Sa~ 95 (142)
+|+++++++.+..........++..+. .++|+|+|+||+|+... . .....+...+...+ .+++.+|+.
T Consensus 116 ~~~~l~~i~~~~~~~~~~d~~~l~~l~--------~~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~-i~v~~~sa~ 186 (274)
T 3t5d_A 116 VQCCLYFIAPSGHGLKPLDIEFMKRLH--------EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHK-IKIYEFPET 186 (274)
T ss_dssp CCEEEEEECSCCSSCCHHHHHHHHHHT--------TTSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTT-CCCCCC---
T ss_pred eeEEEEEecCCCCCCCHHHHHHHHHHh--------ccCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcC-CeEEcCCCC
Confidence 789999997665221122234555552 27999999999998641 1 11123344455566 458889999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy10891 96 EGLMVNDSMKFLLDVL 111 (142)
Q Consensus 96 ~~~~i~~l~~~l~~~~ 111 (142)
++.|+.+++.+|...+
T Consensus 187 ~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 187 DDEEENKLVKKIKDRL 202 (274)
T ss_dssp --------CHHHHHTC
T ss_pred CChhHHHHHHHHhcCC
Confidence 9999999998887654
No 187
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.03 E-value=1.4e-10 Score=83.31 Aligned_cols=105 Identities=16% Similarity=0.181 Sum_probs=65.0
Q ss_pred CCCcchh-------------hhhhhHhhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCC
Q psy10891 1 MTEGQER-------------FTWMTRVYYKDAHGCIIMFDLTNQN-SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCD 66 (142)
Q Consensus 1 Dt~G~e~-------------~~~~~~~~~~~ad~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 66 (142)
||||..+ +..++..++.++|++++|+|..+.. +......++..+ ...+.|+++|+||+|
T Consensus 137 DTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~-------~~~~~~~i~v~NK~D 209 (315)
T 1jwy_B 137 DLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV-------DPEGKRTIGVITKLD 209 (315)
T ss_dssp ECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH-------CSSCSSEEEEEECTT
T ss_pred ECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh-------CCCCCcEEEEEcCcc
Confidence 8999753 6677888999999999999974322 211212333444 224789999999999
Q ss_pred CCC-CCCCHHHHHHHHHHcCCceEEEe---eccC---CCCHHHHHHHHHHHHHH
Q psy10891 67 LPH-RQVDINDIECFYKEHNFIGWTET---STKE---GLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 67 ~~~-~~~~~~~~~~~~~~~~~~~~~~~---Sa~~---~~~i~~l~~~l~~~~~~ 113 (142)
+.. .....+.+......++ .+++.+ |+.+ +.|+.+++..+...+..
T Consensus 210 l~~~~~~~~~~~~~~~~~~~-~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 210 LMDKGTDAMEVLTGRVIPLT-LGFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp SSCSSCCCHHHHTTSSSCCT-TCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred cCCcchHHHHHHhCCCccCC-CCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 875 2212222221001111 235544 5555 78999999988887754
No 188
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.03 E-value=4.9e-11 Score=87.63 Aligned_cols=104 Identities=15% Similarity=0.089 Sum_probs=69.9
Q ss_pred CCCcchhh-------------hhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCC
Q psy10891 1 MTEGQERF-------------TWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDL 67 (142)
Q Consensus 1 Dt~G~e~~-------------~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 67 (142)
||||+.++ ..+...|+.++|++|+|+|..+..... ..|+..+. .....+.|+|+|+||+|+
T Consensus 142 DtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~----~~~~~~~~~i~V~nK~Dl 215 (360)
T 3t34_A 142 DLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISR----EVDPSGDRTFGVLTKIDL 215 (360)
T ss_dssp ECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHH----HSCTTCTTEEEEEECGGG
T ss_pred ECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHH----HhcccCCCEEEEEeCCcc
Confidence 89998887 667889999999999999875432221 23443332 113357899999999998
Q ss_pred CC-CCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 68 PH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 68 ~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
.. .....+.+..+...++ .+|+.+|+.++.++++.+..+....
T Consensus 216 ~~~~~~~~~~~~~~~~~~~-~~~~~v~~~s~~~i~~~~~~~~~~~ 259 (360)
T 3t34_A 216 MDKGTDAVEILEGRSFKLK-YPWVGVVNRSQADINKNVDMIAARK 259 (360)
T ss_dssp CCTTCCSHHHHTTSSSCCS-SCCEEECCCCHHHHHTTCCHHHHHH
T ss_pred CCCcccHHHHHcCcccccc-CCeEEEEECChHHhccCCCHHHHHH
Confidence 76 3334444433333444 5699999999888877665544433
No 189
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.02 E-value=2.7e-09 Score=82.46 Aligned_cols=61 Identities=16% Similarity=0.128 Sum_probs=51.8
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
||||+.+|..-....++-+|++|+|+|+.....-.....|..... .++|+|+++||+|...
T Consensus 106 DTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~--------~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 106 DTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRM--------RATPVMTFVNKMDREA 166 (548)
T ss_dssp CCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHH--------TTCCEEEEEECTTSCC
T ss_pred eCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHH--------hCCceEEEEecccchh
Confidence 999999999999999999999999999998766565556655543 5899999999999754
No 190
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.97 E-value=1.3e-09 Score=76.16 Aligned_cols=110 Identities=10% Similarity=0.063 Sum_probs=69.7
Q ss_pred CCCcc--------hhhhhhhHhhh----ccCCEEEEEEeCCChhhHH-HHHHHHHHHHHhcccCCCCCCCEEEEEeCCCC
Q psy10891 1 MTEGQ--------ERFTWMTRVYY----KDAHGCIIMFDLTNQNSFK-NTLKWKKDVDLKCTLSDGSPIPCMLLANKCDL 67 (142)
Q Consensus 1 Dt~G~--------e~~~~~~~~~~----~~ad~ii~v~d~~~~~s~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 67 (142)
||||. +++...+..++ .++|++|+|+|+++....+ .+-.|+..+. .....+.|+||++||.|+
T Consensus 76 DTPG~~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~----~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 76 DTPDIFSSQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMF----GEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp ECCSCSSTTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHH----CGGGGGGEEEEEECGGGG
T ss_pred ECCCCCCCCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHh----ChhhhccEEEEEEchHhc
Confidence 89996 44444443344 8999999999998532111 1223333331 111136899999999998
Q ss_pred CCCCC-------CHHHHHHHHHHcCCceEEEeeccC-----CCCHHHHHHHHHHHHHHHh
Q psy10891 68 PHRQV-------DINDIECFYKEHNFIGWTETSTKE-----GLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 68 ~~~~~-------~~~~~~~~~~~~~~~~~~~~Sa~~-----~~~i~~l~~~l~~~~~~~~ 115 (142)
..... ..+.+..+.+.++.. ++.++... +.++.+|+..|...+.++.
T Consensus 152 ~~~~~~~~l~~~~~~~l~~l~~~~g~~-~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~ 210 (247)
T 3lxw_A 152 AGGSLHDYVSNTENRALRELVAECGGR-VCAFDNRATGREQEAQVEQLLGMVEGLVLEHK 210 (247)
T ss_dssp TTCCHHHHHHHCCCHHHHHHHHHTTTC-EEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHhhcccHHHHHHHHHcCCe-EEEEeCCCCccccHHHHHHHHHHHHHHHHHcC
Confidence 64211 114466777787743 66666554 5799999999988876653
No 191
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.97 E-value=2e-09 Score=80.51 Aligned_cols=110 Identities=12% Similarity=0.061 Sum_probs=73.8
Q ss_pred CCCcchh----hhhhhHhh---hccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCC
Q psy10891 1 MTEGQER----FTWMTRVY---YKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVD 73 (142)
Q Consensus 1 Dt~G~e~----~~~~~~~~---~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~ 73 (142)
||||... +..+...+ ...++.+++|+|++ ..++..+..|..++..+.. .....|.|+|+||+|+... ..
T Consensus 211 DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~--aL~~~P~ILVlNKlDl~~~-~~ 286 (416)
T 1udx_A 211 DIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDP--ALLRRPSLVALNKVDLLEE-EA 286 (416)
T ss_dssp ECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCH--HHHHSCEEEEEECCTTSCH-HH
T ss_pred eccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhH--HhhcCCEEEEEECCChhhH-HH
Confidence 6788632 22233333 35799999999997 4456666666666543210 0126899999999998642 22
Q ss_pred HHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 74 INDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
...+...+...+ .+++.+||+++.|+++++..|...+.+..
T Consensus 287 ~~~l~~~l~~~g-~~vi~iSA~~g~gi~eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 287 VKALADALAREG-LAVLPVSALTGAGLPALKEALHALVRSTP 327 (416)
T ss_dssp HHHHHHHHHTTT-SCEEECCTTTCTTHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHhcC-CeEEEEECCCccCHHHHHHHHHHHHHhcc
Confidence 233334444445 45999999999999999999999987643
No 192
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.95 E-value=2.3e-09 Score=76.43 Aligned_cols=95 Identities=15% Similarity=0.088 Sum_probs=68.1
Q ss_pred CCcch-hhhhhhHhhhccCCEEEEEEeCCChhhHHH--HHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHH
Q psy10891 2 TEGQE-RFTWMTRVYYKDAHGCIIMFDLTNQNSFKN--TLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIE 78 (142)
Q Consensus 2 t~G~e-~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~ 78 (142)
.||+. +....+...+..+|+++.|+|+.+|.+... +..|+ .+.|+++|+||+|+.+ .+...
T Consensus 6 ~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l------------~~kp~ilVlNK~DL~~----~~~~~ 69 (282)
T 1puj_A 6 FPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL------------KNKPRIMLLNKADKAD----AAVTQ 69 (282)
T ss_dssp ---CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC------------SSSCEEEEEECGGGSC----HHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH------------CCCCEEEEEECcccCC----HHHHH
Confidence 47754 455566778899999999999999977653 32321 4789999999999964 23333
Q ss_pred HH---HHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 79 CF---YKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 79 ~~---~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
.| .+..+ .+++.+||+++.|+.+++..+...+..
T Consensus 70 ~~~~~~~~~g-~~~i~iSA~~~~gi~~L~~~i~~~l~~ 106 (282)
T 1puj_A 70 QWKEHFENQG-IRSLSINSVNGQGLNQIVPASKEILQE 106 (282)
T ss_dssp HHHHHHHTTT-CCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CcEEEEECCCcccHHHHHHHHHHHHHH
Confidence 33 33445 468999999999999999988877653
No 193
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.95 E-value=1.6e-09 Score=75.80 Aligned_cols=105 Identities=13% Similarity=-0.023 Sum_probs=64.5
Q ss_pred CCCcchhhhhhhH------hhhccCCEEEEEEeCCChhhHHHHH---HHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCC
Q psy10891 1 MTEGQERFTWMTR------VYYKDAHGCIIMFDLTNQNSFKNTL---KWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQ 71 (142)
Q Consensus 1 Dt~G~e~~~~~~~------~~~~~ad~ii~v~d~~~~~s~~~~~---~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~ 71 (142)
||||+..+..... .++.+ +++++++|.....+..... .+...... ..+.|+++|+||+|+....
T Consensus 115 DtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~------~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 115 DTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL------RLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp ECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH------HHTSCEEEEECCGGGCCHH
T ss_pred eCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc------ccCCCeEEEEecccccccc
Confidence 8999988754432 24566 8999999875432222211 11111111 1368999999999986411
Q ss_pred CCHHHHHHH----------------------------HHHcCC-ceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 72 VDINDIECF----------------------------YKEHNF-IGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 72 ~~~~~~~~~----------------------------~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
....+..+ +..++. .+++++||+++.|+++++.+|.+.+..
T Consensus 188 -~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 188 -EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp -HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 01111111 233332 368999999999999999999887754
No 194
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.92 E-value=8.6e-10 Score=75.27 Aligned_cols=86 Identities=17% Similarity=0.180 Sum_probs=59.5
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHHHHHHcC-CceEEEeec
Q psy10891 17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIECFYKEHN-FIGWTETST 94 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~~~~~~~-~~~~~~~Sa 94 (142)
..++.+++|+|++..... ...+.... +.|+++|+||+|+.. .....+.+..++...+ ..+++++||
T Consensus 128 ~~~~~~i~vvd~~~~~~~--~~~~~~~~----------~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa 195 (221)
T 2wsm_A 128 LGENYRVVMVSVTEGDDV--VEKHPEIF----------RVADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDL 195 (221)
T ss_dssp CSCSEEEEEEEGGGCTTH--HHHCHHHH----------HTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBT
T ss_pred cccCcEEEEEeCCCcchh--hhhhhhhh----------hcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeec
Confidence 367889999998765321 11121211 578999999999854 2245566666665543 357999999
Q ss_pred cCCCCHHHHHHHHHHHHHHH
Q psy10891 95 KEGLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 95 ~~~~~i~~l~~~l~~~~~~~ 114 (142)
++|.|++++|++|...+...
T Consensus 196 ~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 196 KTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp TTTBTHHHHHHHHHHHHC--
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999887554
No 195
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.91 E-value=3.1e-10 Score=83.32 Aligned_cols=98 Identities=10% Similarity=-0.049 Sum_probs=62.8
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||... .....+..+|++++|+|......+..+. .. ....|+++|+||+|+............+
T Consensus 178 DTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~---~~---------~~~~p~ivVlNK~Dl~~~~~~~~~~~~l 242 (355)
T 3p32_A 178 ETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK---KG---------VLELADIVVVNKADGEHHKEARLAAREL 242 (355)
T ss_dssp EECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC---TT---------SGGGCSEEEEECCCGGGHHHHHHHHHHH
T ss_pred eCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH---Hh---------HhhcCCEEEEECCCCcChhHHHHHHHHH
Confidence 7888322 2334458999999999987654332211 11 1246999999999985411111111222
Q ss_pred HHH---c-----C-CceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 81 YKE---H-----N-FIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 81 ~~~---~-----~-~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
... . + ..+++.+||++|.|+++++++|...+..
T Consensus 243 ~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 243 SAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 221 2 1 2569999999999999999999988765
No 196
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.84 E-value=5.2e-10 Score=82.02 Aligned_cols=102 Identities=18% Similarity=0.071 Sum_probs=63.6
Q ss_pred CCCcc-------------hhhhhhhHhhhccCCEEE-EEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCC
Q psy10891 1 MTEGQ-------------ERFTWMTRVYYKDAHGCI-IMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCD 66 (142)
Q Consensus 1 Dt~G~-------------e~~~~~~~~~~~~ad~ii-~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 66 (142)
||||. +.+..++..|+.+++.++ +|.+.+...+-.....++..+ ...+.|+++|+||+|
T Consensus 136 DTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~-------~~~~~~~i~V~NK~D 208 (353)
T 2x2e_A 136 DLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEV-------DPQGQRTIGVITKLD 208 (353)
T ss_dssp ECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHH-------CTTCTTEEEEEECGG
T ss_pred ECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHh-------CcCCCceEEEecccc
Confidence 89995 367778888887666555 556665432222222344444 235789999999999
Q ss_pred CCCCCC-CHHHHHHH--HHHcCCceEEEeeccCCCCHHHHHHHHHH
Q psy10891 67 LPHRQV-DINDIECF--YKEHNFIGWTETSTKEGLMVNDSMKFLLD 109 (142)
Q Consensus 67 ~~~~~~-~~~~~~~~--~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 109 (142)
+.+... ....+... ....++.+++.+||+++.|+++++..+..
T Consensus 209 l~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 209 LMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp GSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred ccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 875221 12221100 00123345778999999999999999876
No 197
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.84 E-value=2.9e-09 Score=83.59 Aligned_cols=61 Identities=16% Similarity=0.169 Sum_probs=49.8
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
||||+.+|..-....++-+|++|+|+|+.....-+....|..... .++|.|+++||+|...
T Consensus 73 DTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~--------~~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 73 DTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRK--------MGIPTIFFINKIDQNG 133 (638)
T ss_dssp ECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHH--------HTCSCEECCEECCSSS
T ss_pred ECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHH--------cCCCeEEEEecccccc
Confidence 899999999999999999999999999998754444445544443 4789999999999754
No 198
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.79 E-value=7e-09 Score=75.73 Aligned_cols=98 Identities=12% Similarity=-0.001 Sum_probs=60.0
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCC-CCC--HHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR-QVD--INDI 77 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~-~~~--~~~~ 77 (142)
||||...+... ....+|++++|+|.+....+..+.. .. .+.|.++|+||+|+... ... ...+
T Consensus 155 DTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~---------~~~p~ivv~NK~Dl~~~~~~~~~~~~l 219 (341)
T 2p67_A 155 ETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL---------MEVADLIVINKDDGDNHTNVAIARHMY 219 (341)
T ss_dssp EEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH---------HHHCSEEEECCCCTTCHHHHHHHHHHH
T ss_pred eCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh---------hcccCEEEEECCCCCChHHHHHHHHHH
Confidence 78996544332 4689999999999975533211111 11 14688999999998541 110 0122
Q ss_pred HHHHHHcC------CceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 78 ECFYKEHN------FIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 78 ~~~~~~~~------~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
.......+ ..+++.+||++|.|++++++.|...+..
T Consensus 220 ~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~~ 261 (341)
T 2p67_A 220 ESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTA 261 (341)
T ss_dssp HHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 22222222 2468899999999999999999987653
No 199
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.77 E-value=4.6e-09 Score=84.78 Aligned_cols=60 Identities=13% Similarity=0.216 Sum_probs=52.7
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP 68 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 68 (142)
||||+.+|...+..+++.+|++|+|+|+++..++.....|..... .++|+|+|+||+|+.
T Consensus 104 DTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~--------~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 104 DSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG--------ERIKPVVVINKVDRA 163 (842)
T ss_dssp CCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH--------TTCEEEEEEECHHHH
T ss_pred ECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--------cCCCeEEEEECCCcc
Confidence 899999999999999999999999999999888887766755442 478999999999975
No 200
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.74 E-value=3.1e-09 Score=76.39 Aligned_cols=60 Identities=17% Similarity=0.072 Sum_probs=39.4
Q ss_pred CCCCEEEEEeCCCCCC-CC--CCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHHh
Q psy10891 54 SPIPCMLLANKCDLPH-RQ--VDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115 (142)
Q Consensus 54 ~~~p~ilv~nK~D~~~-~~--~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 115 (142)
..+|+++|+||+|+.. +. ...+.+..++..++ .+++++||+++ +++++|..+...+.+..
T Consensus 154 ~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~-~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~ 216 (301)
T 2qnr_A 154 NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHN-IKIYHLPDAES-DEDEDFKEQTRLLKASI 216 (301)
T ss_dssp TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTT-CCCCCCC----------CHHHHHHHHTTC
T ss_pred hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcC-CeEEecCCccc-cccHHHHHHHHHhhcCC
Confidence 4689999999999875 22 22356677888888 46999999999 99999999999887543
No 201
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.71 E-value=9.8e-08 Score=75.81 Aligned_cols=60 Identities=20% Similarity=0.280 Sum_probs=50.8
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP 68 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 68 (142)
|||||-+|..-....++=+|++|+|+|+......+....|..... .++|.|+++||+|..
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~--------~~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK--------YGVPRIVYVNKMDRQ 150 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--------HTCCEEEEEECSSST
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH--------cCCCeEEEEcccccc
Confidence 999999999999999999999999999998765555555655553 479999999999974
No 202
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.68 E-value=8.4e-09 Score=82.11 Aligned_cols=96 Identities=20% Similarity=0.132 Sum_probs=63.6
Q ss_pred hhhhhhHhhh-ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHH---
Q psy10891 7 RFTWMTRVYY-KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYK--- 82 (142)
Q Consensus 7 ~~~~~~~~~~-~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~--- 82 (142)
.+..++..|+ ..+|++++|+|++...+..+...++..+ ...+.|+|+|+||+|+.........+.. ..
T Consensus 175 ~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L-------~~~g~pvIlVlNKiDlv~~~~~~~~il~-~~~~~ 246 (772)
T 3zvr_A 175 QIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEV-------DPQGQRTIGVITKLDLMDEGTDARDVLE-NKLLP 246 (772)
T ss_dssp HHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHH-------CTTCSSEEEEEECTTSSCTTCCSHHHHT-TCSSC
T ss_pred HHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHH-------HhcCCCEEEEEeCcccCCcchhhHHHHH-HHhhh
Confidence 4555666666 5789999999998754333322344555 2247899999999999762221222111 01
Q ss_pred -HcCCceEEEeeccCCCCHHHHHHHHHHH
Q psy10891 83 -EHNFIGWTETSTKEGLMVNDSMKFLLDV 110 (142)
Q Consensus 83 -~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 110 (142)
..++.+++.+||+++.|+++|++.+...
T Consensus 247 l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 247 LRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp CSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred hhccCCceEEecccccccchhHHHHHHHH
Confidence 1244567789999999999999998864
No 203
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.63 E-value=6.5e-08 Score=70.84 Aligned_cols=97 Identities=7% Similarity=-0.033 Sum_probs=56.1
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||+|.-. ........+|++++|+|+..+.....+. ..+ -..|.++|+||+|+............+
T Consensus 173 DT~Gi~~---~~~~l~~~~d~vl~V~d~~~~~~~~~i~---~~i---------l~~~~ivVlNK~Dl~~~~~~~~~~~~l 237 (349)
T 2www_A 173 ETVGVGQ---SEFAVADMVDMFVLLLPPAGGDELQGIK---RGI---------IEMADLVAVTKSDGDLIVPARRIQAEY 237 (349)
T ss_dssp ECCCC-----CHHHHHTTCSEEEEEECCC------------------------CCSCSEEEECCCSGGGHHHHHHHHHHH
T ss_pred ECCCcch---hhhhHHhhCCEEEEEEcCCcchhHHHhH---HHH---------HhcCCEEEEeeecCCCchhHHHHHHHH
Confidence 6888421 1234567899999999998653322111 112 246889999999985310000112222
Q ss_pred HHHc---------CCceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 81 YKEH---------NFIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 81 ~~~~---------~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
.... ...+++.+||+++.|+++++++|...+.
T Consensus 238 ~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 238 VSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 2111 1246889999999999999999988764
No 204
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.59 E-value=6.3e-08 Score=68.05 Aligned_cols=66 Identities=6% Similarity=-0.034 Sum_probs=45.4
Q ss_pred CCCcchhhhhhhHhhhc---------cCCEEEEEEeCCChhhHHH-HHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 1 MTEGQERFTWMTRVYYK---------DAHGCIIMFDLTNQNSFKN-TLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~---------~ad~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
||||+++|..+.+.+++ ++|++++|++++... +.. ...|+..+..... .....|+++|+||+|+..
T Consensus 90 DTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~--~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 90 DTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFG--KEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp ECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHC--GGGGGGEEEEEECTTCCC
T ss_pred ECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhc--hhhhcCEEEEEeCcccCC
Confidence 89999988776655554 889999999987643 322 2356666653320 111249999999999854
No 205
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.58 E-value=1.8e-08 Score=74.96 Aligned_cols=46 Identities=24% Similarity=0.249 Sum_probs=32.3
Q ss_pred CCCEEEEEeCCCCCCCCCCHHHHHHHHHHc---CCceEEEeeccCCCCHHHHHH
Q psy10891 55 PIPCMLLANKCDLPHRQVDINDIECFYKEH---NFIGWTETSTKEGLMVNDSMK 105 (142)
Q Consensus 55 ~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~l~~ 105 (142)
.+|+|+|+||+|+.. .+....+.+.+ + .+++.+||+.+.++.+++.
T Consensus 214 ~kP~i~v~NK~D~~~----~~~l~~l~~~~~~~~-~~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 214 NKPMVIAANKADAAS----DEQIKRLVREEEKRG-YIVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp HSCEEEEEECGGGSC----HHHHHHHHHHHHHTT-CEEEEECHHHHHHHHSCSS
T ss_pred CCCEEEEEeCccccc----hHHHHHHHHHHhhcC-CcEEEEeccchhhHHHHHh
Confidence 489999999999752 23334443332 4 5699999999988876543
No 206
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.57 E-value=9e-09 Score=77.06 Aligned_cols=88 Identities=18% Similarity=0.182 Sum_probs=42.8
Q ss_pred hhhccCCE--EEEEEeCCChhhHHHHH-HHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCH--HHHHHHHHHcCCc
Q psy10891 14 VYYKDAHG--CIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDI--NDIECFYKEHNFI 87 (142)
Q Consensus 14 ~~~~~ad~--ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~--~~~~~~~~~~~~~ 87 (142)
.++.++++ ++++.+.+. .++.... .|+..+. .++|+|+|+||+|+.. +.+.. ..+..++...+ .
T Consensus 132 al~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L~--------~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~-i 201 (418)
T 2qag_C 132 RQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRLH--------EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHK-I 201 (418)
T ss_dssp CCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHHT--------TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHT-C
T ss_pred HhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHHh--------ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcC-C
Confidence 34555554 455444431 2333333 5777663 4789999999999875 32222 55666777777 5
Q ss_pred eEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 88 GWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 88 ~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
+++++|++++.++.++|..+...+
T Consensus 202 ~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 202 KIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp CCCCCC-----------------C
T ss_pred eEEeCCCCCCcCHHHHHHHHHhhC
Confidence 599999999999998887776543
No 207
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.50 E-value=3.1e-08 Score=71.33 Aligned_cols=92 Identities=17% Similarity=0.123 Sum_probs=61.3
Q ss_pred hhhhhhHhhhccCCEEEEEEeCCChh-hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCC---CHHHHHHHHH
Q psy10891 7 RFTWMTRVYYKDAHGCIIMFDLTNQN-SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQV---DINDIECFYK 82 (142)
Q Consensus 7 ~~~~~~~~~~~~ad~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~---~~~~~~~~~~ 82 (142)
|-+.+.+..++++|.+++|+|+.+|. +...++.++.... ..++|.+||.||+|+.+... .......+..
T Consensus 75 R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~-------~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~ 147 (307)
T 1t9h_A 75 RTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE-------ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYR 147 (307)
T ss_dssp CSCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH-------TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH-------HCCCCEEEEEECCccCchhhhHHHHHHHHHHHH
Confidence 33445566789999999999999775 4445566654442 25789999999999965211 0122333344
Q ss_pred HcCCceEEEeeccCCCCHHHHHHH
Q psy10891 83 EHNFIGWTETSTKEGLMVNDSMKF 106 (142)
Q Consensus 83 ~~~~~~~~~~Sa~~~~~i~~l~~~ 106 (142)
..| .+++.+||.++.|+++|+..
T Consensus 148 ~~g-~~v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 148 NIG-YDVYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp HHT-CCEEECCHHHHTTCTTTGGG
T ss_pred hCC-CeEEEEecCCCCCHHHHHhh
Confidence 456 46889999988887766543
No 208
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.47 E-value=9e-08 Score=74.00 Aligned_cols=62 Identities=18% Similarity=0.153 Sum_probs=48.7
Q ss_pred CCCcchh-----------hhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 1 MTEGQER-----------FTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 1 Dt~G~e~-----------~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
||||+.. |..++..++.++|++++|+|+++.........|+..+. ..+.|+++|+||+|+..
T Consensus 160 DTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~-------~~~~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 160 DTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR-------GHEDKIRVVLNKADMVE 232 (550)
T ss_dssp ECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTT-------TCGGGEEEEEECGGGSC
T ss_pred ECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHH-------hcCCCEEEEEECCCccC
Confidence 8999875 66778888999999999999987544455556766653 23589999999999865
No 209
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.43 E-value=7.9e-08 Score=67.77 Aligned_cols=92 Identities=13% Similarity=0.048 Sum_probs=59.2
Q ss_pred Ccchhhh-hhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHH
Q psy10891 3 EGQERFT-WMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFY 81 (142)
Q Consensus 3 ~G~e~~~-~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~ 81 (142)
|||.... ..+...+.++|+++.|+|+.+|.+..... +. + - ++|.++|+||+|+.+... .+....+.
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l-------l--~k~~iivlNK~DL~~~~~-~~~~~~~~ 71 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F-------S--RKETIILLNKVDIADEKT-TKKWVEFF 71 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C-------T--TSEEEEEEECGGGSCHHH-HHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h-------c--CCCcEEEEECccCCCHHH-HHHHHHHH
Confidence 5654322 34566788999999999999987654310 01 1 1 689999999999965111 11222334
Q ss_pred HHcCCceEEEeeccCCCCHHHHHHHHHH
Q psy10891 82 KEHNFIGWTETSTKEGLMVNDSMKFLLD 109 (142)
Q Consensus 82 ~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 109 (142)
+..+ .++ .+||+++.|+++++..+..
T Consensus 72 ~~~g-~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 72 KKQG-KRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp HHTT-CCE-EECCTTSCHHHHHHHHCCC
T ss_pred HHcC-CeE-EEECCCCcCHHHHHHHHHH
Confidence 4556 457 9999999999999877643
No 210
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.41 E-value=3.7e-07 Score=64.31 Aligned_cols=66 Identities=11% Similarity=0.016 Sum_probs=42.9
Q ss_pred CCCcchhhhhhhH-------hh--hccCCEEEEEEeCCChhhHHH-HHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 1 MTEGQERFTWMTR-------VY--YKDAHGCIIMFDLTNQNSFKN-TLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 1 Dt~G~e~~~~~~~-------~~--~~~ad~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
||||++++..+.. .+ ..++|++++|+|++.. ++.. ...|+..+..... ....+|+++|+||+|+..
T Consensus 93 DTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~--~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 93 DTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFG--KGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp ECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHC--GGGGGGEEEEEECCSCCC
T ss_pred ECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhC--cccccCEEEEEECcccCC
Confidence 8999987764322 12 3479999999998753 2332 2367766653320 001269999999999865
No 211
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.34 E-value=4.9e-07 Score=61.63 Aligned_cols=59 Identities=20% Similarity=0.128 Sum_probs=45.8
Q ss_pred CCCEEEEEeCCCCCC-CCCCHHHHHHHHHHcC-CceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 55 PIPCMLLANKCDLPH-RQVDINDIECFYKEHN-FIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 55 ~~p~ilv~nK~D~~~-~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
..|+++|+||+|+.. +....+.+..++..++ ..+++++||++|.|++++|..+...+..
T Consensus 164 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 164 KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 356799999999864 2345666666766643 3579999999999999999999887754
No 212
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.23 E-value=1.6e-06 Score=63.15 Aligned_cols=97 Identities=10% Similarity=-0.032 Sum_probs=56.0
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIEC 79 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~ 79 (142)
||||.-.- .......+|++++|+|.........+..+ + ...+.++++||+|+.. ..........
T Consensus 154 DT~Gi~~~---~~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i---------~~~~~ivvlNK~Dl~~~~~~s~~~~~~ 218 (337)
T 2qm8_A 154 ETVGVGQS---ETAVADLTDFFLVLMLPGAGDELQGIKKG---I---------FELADMIAVNKADDGDGERRASAAASE 218 (337)
T ss_dssp EECSSSSC---HHHHHTTSSEEEEEECSCC------CCTT---H---------HHHCSEEEEECCSTTCCHHHHHHHHHH
T ss_pred ECCCCCcc---hhhHHhhCCEEEEEEcCCCcccHHHHHHH---H---------hccccEEEEEchhccCchhHHHHHHHH
Confidence 67774321 12345789999999998644221111111 1 1246678889999743 1111112233
Q ss_pred HHHHc---C------CceEEEeeccCCCCHHHHHHHHHHHHH
Q psy10891 80 FYKEH---N------FIGWTETSTKEGLMVNDSMKFLLDVLM 112 (142)
Q Consensus 80 ~~~~~---~------~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 112 (142)
+.... . ..+++.+||+++.|++++++.|.....
T Consensus 219 l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 219 YRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 32211 1 245888999999999999999988754
No 213
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.12 E-value=6.2e-06 Score=60.53 Aligned_cols=83 Identities=11% Similarity=0.079 Sum_probs=55.5
Q ss_pred hhccCCEEEEEEeCCChh-hHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH---HHHcCCceEE
Q psy10891 15 YYKDAHGCIIMFDLTNQN-SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF---YKEHNFIGWT 90 (142)
Q Consensus 15 ~~~~ad~ii~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~---~~~~~~~~~~ 90 (142)
...++|.+++|... .|. +...++.++..... .++|.+||.||+|+.+.. ..+....| ....| .+++
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~-------~~~~~iivlNK~DL~~~~-~~~~~~~~~~~y~~~G-~~v~ 196 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET-------LQVEPLIVLNKIDLLDDE-GMDFVNEQMDIYRNIG-YRVL 196 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH-------HTCEEEEEEECGGGCCHH-HHHHHHHHHHHHHTTT-CCEE
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh-------cCCCEEEEEECccCCCch-hHHHHHHHHHHHHhCC-CcEE
Confidence 36899999988765 454 44556666544321 368889999999996521 11113333 34456 4589
Q ss_pred EeeccCCCCHHHHHHHH
Q psy10891 91 ETSTKEGLMVNDSMKFL 107 (142)
Q Consensus 91 ~~Sa~~~~~i~~l~~~l 107 (142)
.+||.++.|++++...+
T Consensus 197 ~~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 197 MVSSHTQDGLKPLEEAL 213 (358)
T ss_dssp ECBTTTTBTHHHHHHHH
T ss_pred EEecCCCcCHHHHHHhc
Confidence 99999999999887654
No 214
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.09 E-value=5.7e-06 Score=60.99 Aligned_cols=52 Identities=10% Similarity=0.008 Sum_probs=36.8
Q ss_pred CCCEEEEEeCCCCC--CC--CCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHH
Q psy10891 55 PIPCMLLANKCDLP--HR--QVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFL 107 (142)
Q Consensus 55 ~~p~ilv~nK~D~~--~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 107 (142)
..|+++++||.|.. +. ....+.+..+++..+ .+++.+||+...++.++...-
T Consensus 201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g-~~vv~iSAk~E~el~eL~~~~ 256 (368)
T 2dby_A 201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEG-AEVVVVSARLEAELAELSGEE 256 (368)
T ss_dssp GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHT-CEEEEECHHHHHHHHTSCHHH
T ss_pred cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcC-CeEEEeechhHHHHHHhchHH
Confidence 48999999999742 21 334566777887777 569999999866666555443
No 215
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.08 E-value=6.4e-05 Score=55.26 Aligned_cols=42 Identities=10% Similarity=0.029 Sum_probs=30.4
Q ss_pred CCCCEEEEEeCCCCCC-CCCCHHHHHHHHHHcCCceEEEeeccC
Q psy10891 54 SPIPCMLLANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKE 96 (142)
Q Consensus 54 ~~~p~ilv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 96 (142)
...|+++++|+.|..- .....+.+..++...+ .+++.+||+.
T Consensus 198 t~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~-~~~i~~sA~~ 240 (363)
T 1jal_A 198 TLKPTMYIANVNEDGFENNPYLDRVREIAAKEG-AVVVPVCAAI 240 (363)
T ss_dssp TTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTT-CEEEEECHHH
T ss_pred cCCcEEEEEecccccccccHHHHHHHHHHHHcC-CCEEEechHH
Confidence 4599999999998642 2234566677777777 5699999764
No 216
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=96.80 E-value=0.013 Score=43.32 Aligned_cols=68 Identities=12% Similarity=0.103 Sum_probs=42.9
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC---------CCCCHHHHHHHHHHcC
Q psy10891 15 YYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH---------RQVDINDIECFYKEHN 85 (142)
Q Consensus 15 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~---------~~~~~~~~~~~~~~~~ 85 (142)
.++.+|++++|+|.++|.. ..+.+..++.... ......|.+++.||.|... .....++...+...+.
T Consensus 146 ~i~~ad~il~vvD~~~p~~--~~~~i~~EL~~~~--~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~ 221 (376)
T 4a9a_A 146 VARTCNLLFIILDVNKPLH--HKQIIEKELEGVG--IRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYR 221 (376)
T ss_dssp HHHHCSEEEEEEETTSHHH--HHHHHHHHHHHTT--EEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTT
T ss_pred HHHhcCccccccccCccHH--HHHHHHHHHHHhh--HhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhc
Confidence 4578999999999998743 3333333333211 1124578889999999643 2355667776666665
Q ss_pred C
Q psy10891 86 F 86 (142)
Q Consensus 86 ~ 86 (142)
+
T Consensus 222 l 222 (376)
T 4a9a_A 222 I 222 (376)
T ss_dssp C
T ss_pred c
Confidence 3
No 217
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.49 E-value=0.0023 Score=49.01 Aligned_cols=79 Identities=8% Similarity=0.013 Sum_probs=48.2
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCE-EEEEeCCCCCCCCCCHHHHHHHHHHcCC----------
Q psy10891 18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPC-MLLANKCDLPHRQVDINDIECFYKEHNF---------- 86 (142)
Q Consensus 18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D~~~~~~~~~~~~~~~~~~~~---------- 86 (142)
.+|.+++|+|........ .....+. ..+|+ ++|.||+|...+. ... ..+....+.
T Consensus 213 ~pd~vllVvDa~~g~~~~---~~a~~~~--------~~~~i~gvVlNK~D~~~~~--g~~-l~~~~~~g~PI~fig~ge~ 278 (504)
T 2j37_W 213 QPDNIVYVMDASIGQACE---AQAKAFK--------DKVDVASVIVTKLDGHAKG--GGA-LSAVAATKSPIIFIGTGEH 278 (504)
T ss_dssp CCSEEEEEEETTCCTTHH---HHHHHHH--------HHHCCCCEEEECTTSCCCC--THH-HHHHHHHCCCEEEEECSSS
T ss_pred cCceEEEEEeccccccHH---HHHHHHH--------hhcCceEEEEeCCccccch--HHH-HHHHHHhCCCeEEeccccc
Confidence 789999999998754311 2222232 12575 8899999986421 111 123333331
Q ss_pred -------ceEEEeeccCCCC-HHHHHHHHHHH
Q psy10891 87 -------IGWTETSTKEGLM-VNDSMKFLLDV 110 (142)
Q Consensus 87 -------~~~~~~Sa~~~~~-i~~l~~~l~~~ 110 (142)
.|.+++|+..|.| +.++++++...
T Consensus 279 ~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 279 IDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp TTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred hhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 1223478889988 98888888765
No 218
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.83 E-value=0.073 Score=40.13 Aligned_cols=67 Identities=13% Similarity=-0.041 Sum_probs=39.2
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccC
Q psy10891 17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKE 96 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 96 (142)
..+|.+++|+|+........ ....+.. .-.+..+|.||.|... .......+....+ .|+.+++.
T Consensus 211 ~~pd~vlLVvDA~~gq~a~~---~a~~f~~-------~~~i~gVIlTKlD~~~---~gG~~ls~~~~~g-~PI~fig~-- 274 (443)
T 3dm5_A 211 IHPHEVILVIDGTIGQQAYN---QALAFKE-------ATPIGSIIVTKLDGSA---KGGGALSAVAATG-APIKFIGT-- 274 (443)
T ss_dssp HCCSEEEEEEEGGGGGGHHH---HHHHHHH-------SCTTEEEEEECCSSCS---SHHHHHHHHHTTC-CCEEEEEC--
T ss_pred hcCceEEEEEeCCCchhHHH---HHHHHHh-------hCCCeEEEEECCCCcc---cccHHHHHHHHHC-CCEEEEEc--
Confidence 36899999999986543222 2233321 1234568999999753 2223334455566 56777774
Q ss_pred CCC
Q psy10891 97 GLM 99 (142)
Q Consensus 97 ~~~ 99 (142)
|++
T Consensus 275 Ge~ 277 (443)
T 3dm5_A 275 GEK 277 (443)
T ss_dssp SSS
T ss_pred CCC
Confidence 544
No 219
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=94.76 E-value=0.012 Score=43.77 Aligned_cols=33 Identities=6% Similarity=-0.056 Sum_probs=19.4
Q ss_pred CCCcchhhhh-------hhHhhhccCCEEEEEEeCCChhh
Q psy10891 1 MTEGQERFTW-------MTRVYYKDAHGCIIMFDLTNQNS 33 (142)
Q Consensus 1 Dt~G~e~~~~-------~~~~~~~~ad~ii~v~d~~~~~s 33 (142)
||||+.++.+ .+..+++++|++++|+|+++..+
T Consensus 92 DtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 92 DIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp ECCC-----------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred ECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 8999888665 45677899999999999986433
No 220
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.82 E-value=0.26 Score=36.96 Aligned_cols=60 Identities=12% Similarity=-0.002 Sum_probs=35.1
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCC-C-EEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEe
Q psy10891 18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPI-P-CMLLANKCDLPHRQVDINDIECFYKEHNFIGWTET 92 (142)
Q Consensus 18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~-p-~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (142)
.+|.+++|+|...... .......+. ... | ..+|.||+|...+ ......+....+ .|+.++
T Consensus 210 ~~d~vllVvda~~g~~---~~~~~~~~~--------~~~~~i~gvVlnK~D~~~~---~g~~l~~~~~~~-~pi~~i 271 (432)
T 2v3c_C 210 NPDEIILVIDGTIGQQ---AGIQAKAFK--------EAVGEIGSIIVTKLDGSAK---GGGALSAVAETK-APIKFI 271 (432)
T ss_dssp CCSEEEEEEEGGGGGG---HHHHHHHHH--------TTSCSCEEEEEECSSSCST---THHHHHHHHHSS-CCEEEE
T ss_pred cCcceeEEeeccccHH---HHHHHHHHh--------hcccCCeEEEEeCCCCccc---hHHHHHHHHHHC-CCEEEe
Confidence 6899999999876532 222223332 345 6 7899999997431 122333556666 345444
No 221
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.81 E-value=0.13 Score=36.66 Aligned_cols=86 Identities=7% Similarity=-0.008 Sum_probs=49.2
Q ss_pred CCCcchh--hh-hhhH-----hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCCCC
Q psy10891 1 MTEGQER--FT-WMTR-----VYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPHRQ 71 (142)
Q Consensus 1 Dt~G~e~--~~-~~~~-----~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~ 71 (142)
||||... .. .++. .....+|.+++|+|.... .........+. ...+ ..+|.||.|...
T Consensus 187 DTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~--------~~~~i~gvVlnk~D~~~-- 253 (297)
T 1j8m_F 187 DTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFN--------QASKIGTIIITKMDGTA-- 253 (297)
T ss_dssp ECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHH--------HTCTTEEEEEECGGGCT--
T ss_pred eCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHH--------hhCCCCEEEEeCCCCCc--
Confidence 7888655 21 1221 123479999999998643 22222223332 2356 678999999743
Q ss_pred CCHHHHHHHHHHcCCceEEEeeccCCCCHHHH
Q psy10891 72 VDINDIECFYKEHNFIGWTETSTKEGLMVNDS 103 (142)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 103 (142)
.......+....+ .|+.+++ +|++++++
T Consensus 254 -~~g~~~~~~~~~~-~pi~~i~--~Ge~v~dl 281 (297)
T 1j8m_F 254 -KGGGALSAVAATG-ATIKFIG--TGEKIDEL 281 (297)
T ss_dssp -THHHHHHHHHTTT-CCEEEEE--CSSSTTCE
T ss_pred -chHHHHHHHHHHC-cCEEEEe--CCCChhhc
Confidence 2233445566666 5677766 56666543
No 222
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.49 E-value=0.36 Score=36.27 Aligned_cols=67 Identities=9% Similarity=-0.036 Sum_probs=40.2
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCC
Q psy10891 18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEG 97 (142)
Q Consensus 18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 97 (142)
..+.+++|+|........ .....+... -.+..+|.||.|... .......+....+ .|+.+++. |
T Consensus 211 ~pd~vlLVlDa~~gq~a~---~~a~~f~~~-------~~~~gVIlTKlD~~a---~~G~als~~~~~g-~Pi~fig~--G 274 (433)
T 3kl4_A 211 KPDDVILVIDASIGQKAY---DLASRFHQA-------SPIGSVIITKMDGTA---KGGGALSAVVATG-ATIKFIGT--G 274 (433)
T ss_dssp CCSEEEEEEEGGGGGGGH---HHHHHHHHH-------CSSEEEEEECGGGCS---CHHHHHHHHHHHT-CEEEEEEC--C
T ss_pred CCcceEEEEeCccchHHH---HHHHHHhcc-------cCCcEEEEecccccc---cchHHHHHHHHHC-CCEEEEEC--C
Confidence 579999999997653322 222333211 135688999999743 2233444555566 67877775 6
Q ss_pred CCH
Q psy10891 98 LMV 100 (142)
Q Consensus 98 ~~i 100 (142)
+++
T Consensus 275 e~v 277 (433)
T 3kl4_A 275 EKI 277 (433)
T ss_dssp SSS
T ss_pred CCh
Confidence 554
No 223
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=91.70 E-value=0.55 Score=30.66 Aligned_cols=77 Identities=10% Similarity=-0.093 Sum_probs=46.8
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHH
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECF 80 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~ 80 (142)
||||.- .......+..+|.+++++..+.. + ..+..++..+..... ..++.++.+|.|+.+... ........+
T Consensus 82 D~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~--~~~~~~~~vv~N~~~~~~--~~~~~~~~~ 153 (206)
T 4dzz_A 82 DGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQA--YSRKVEARFLITRKIEMA--TMLNVLKES 153 (206)
T ss_dssp ECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSC--GGGCCEEEEEECSBCTTE--EEEHHHHHH
T ss_pred ECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHH--hCCCCcEEEEEeccCCCc--hHHHHHHHH
Confidence 566544 23445566779999999987654 4 566666666642210 124567799999998532 223445555
Q ss_pred HHHcC
Q psy10891 81 YKEHN 85 (142)
Q Consensus 81 ~~~~~ 85 (142)
++.++
T Consensus 154 l~~~~ 158 (206)
T 4dzz_A 154 IKDTG 158 (206)
T ss_dssp HHHHT
T ss_pred HHHcC
Confidence 55565
No 224
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=89.52 E-value=2.1 Score=28.38 Aligned_cols=66 Identities=5% Similarity=-0.114 Sum_probs=41.5
Q ss_pred hHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcC
Q psy10891 12 TRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHN 85 (142)
Q Consensus 12 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~ 85 (142)
....+..+|.+|+++..+ ..+...+...+..+... .+.++.+|.|+.+.... ..........+.++
T Consensus 84 ~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~------~~~~~~vv~N~~~~~~~-~~~~~~~~~l~~~g 149 (209)
T 3cwq_A 84 LEALADGCDLLVIPSTPD-ALALDALMLTIETLQKL------GNNRFRILLTIIPPYPS-KDGDEARQLLTTAG 149 (209)
T ss_dssp HHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHT------CSSSEEEEECSBCCTTS-CHHHHHHHHHHHTT
T ss_pred HHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhc------cCCCEEEEEEecCCccc-hHHHHHHHHHHHcC
Confidence 445667899999999865 45666666666666421 15678899999986320 12344445555565
No 225
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=88.63 E-value=0.12 Score=38.81 Aligned_cols=40 Identities=13% Similarity=0.011 Sum_probs=24.4
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 21 GCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 21 ~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
+++|+.|...+.+..++ .++..+. .++|+|+|.||+|...
T Consensus 151 ~v~fI~d~~~~l~~~Di-eilk~L~--------~~~~vI~Vi~KtD~Lt 190 (427)
T 2qag_B 151 CLYFIAPTGHSLKSLDL-VTMKKLD--------SKVNIIPIIAKADAIS 190 (427)
T ss_dssp EEEEECCCC---CHHHH-HHHHHTC--------SCSEEEEEESCGGGSC
T ss_pred EEEEEeCCCCCCCHHHH-HHHHHHh--------hCCCEEEEEcchhccc
Confidence 46677777655443332 3333331 5789999999999865
No 226
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=88.26 E-value=0.018 Score=42.27 Aligned_cols=73 Identities=8% Similarity=-0.003 Sum_probs=42.4
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccC
Q psy10891 17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKE 96 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 96 (142)
...+.++++++.....-+..+.. + ......+.|+++++||.|...+.........+.+..+. .+...++..
T Consensus 244 ~~i~~~~~~l~~~~~~~~g~l~~----l----~~l~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~-~l~p~~~~~ 314 (369)
T 3ec1_A 244 REIHPRVYQLNEGQTLFFGGLAR----L----DYIKGGRRSFVCYMANELTVHRTKLEKADSLYANQLGE-LLSPPSKRY 314 (369)
T ss_dssp SCCCCEEEEECTTEEEEETTTEE----E----EEEESSSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTT-TBCSSCGGG
T ss_pred cccCceEEEEcCCceEEECCEEE----E----EEccCCCceEEEEecCCcccccccHHHHHHHHHHhcCC-ccCCCCchh
Confidence 67899999998742211111110 1 11123468999999999987633345555566677774 355555554
Q ss_pred CC
Q psy10891 97 GL 98 (142)
Q Consensus 97 ~~ 98 (142)
..
T Consensus 315 ~~ 316 (369)
T 3ec1_A 315 AA 316 (369)
T ss_dssp TT
T ss_pred hh
Confidence 33
No 227
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=85.79 E-value=1.9 Score=29.47 Aligned_cols=49 Identities=10% Similarity=-0.011 Sum_probs=33.8
Q ss_pred hHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCC
Q psy10891 12 TRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCD 66 (142)
Q Consensus 12 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 66 (142)
....+..+|.+|+++..+. .+...+..++..+... ..+.++.+|.|+..
T Consensus 160 ~~~~l~~aD~vivv~~~~~-~s~~~~~~~~~~l~~~-----~~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 160 LKNALLCSDYVIIPMTAEK-WAVESLDLFNFFVRKL-----NLFLPIFLIITRFK 208 (267)
T ss_dssp HHHHHTTCSEEEEEEESCT-THHHHHHHHHHHHHTT-----TCCCCEEEEEEEEC
T ss_pred HHHHHHHCCeEEEEeCCCh-HHHHHHHHHHHHHHHH-----hccCCEEEEEeccc
Confidence 4455667999999998754 4666666666666422 13567889999984
No 228
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=84.62 E-value=8.1 Score=26.91 Aligned_cols=62 Identities=18% Similarity=0.209 Sum_probs=40.4
Q ss_pred hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEE-EEEeCCCCCCCCCCHHHHHHHHHHcC
Q psy10891 14 VYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCM-LLANKCDLPHRQVDINDIECFYKEHN 85 (142)
Q Consensus 14 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~D~~~~~~~~~~~~~~~~~~~ 85 (142)
..+..+|.+|+|+..+ ..+...+..++..+... ....+.+++ +|.|+.+.. .....+.+.++
T Consensus 175 ~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~~~~gvV~N~~~~~------~~~~~~~~~~g 237 (307)
T 3end_A 175 APLQHADQAVVVTAND-FDSIYAMNRIIAAVQAK---SKNYKVRLAGCVANRSRAT------DEVDRFCKETN 237 (307)
T ss_dssp GGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTT---TTTCCCEEEEEEEESCSCC------HHHHHHHHHHT
T ss_pred HHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHh---hhcCCCceEEEEEecCCcH------HHHHHHHHHcC
Confidence 4567899999999754 55677777777776521 123456655 899999841 34555666666
No 229
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=84.40 E-value=3.7 Score=27.43 Aligned_cols=72 Identities=8% Similarity=-0.029 Sum_probs=44.8
Q ss_pred hhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEE
Q psy10891 11 MTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWT 90 (142)
Q Consensus 11 ~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 90 (142)
.....+..+|.+++++..+ ..+...+..++..+.. ...+...+-+|.|+.+... ....+ .+.+.++. +++
T Consensus 133 ~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~----~~~~~~~~~~v~N~~~~~~-~~~~~---~~~~~~~~-~v~ 202 (245)
T 3ea0_A 133 VGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKE----FEKPISRIEIILNRADTNS-RITSD---EIEKVIGR-PIS 202 (245)
T ss_dssp THHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHT----CSSCCSCEEEEEESTTSCT-TSCHH---HHHHHHTS-CEE
T ss_pred HHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHH----hCCCccceEEEEecCCCCC-CCCHH---HHHHHhCC-CeE
Confidence 3455677899999999865 5677777777777642 1223455789999998643 23333 34455663 355
Q ss_pred Ee
Q psy10891 91 ET 92 (142)
Q Consensus 91 ~~ 92 (142)
.+
T Consensus 203 ~~ 204 (245)
T 3ea0_A 203 KR 204 (245)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 230
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=82.13 E-value=2.2 Score=31.37 Aligned_cols=74 Identities=18% Similarity=0.173 Sum_probs=46.1
Q ss_pred CCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHHH--hCCCCCCCCCCCccccc
Q psy10891 54 SPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ--EGLQNFPNNDDENMVKL 131 (142)
Q Consensus 54 ~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~--~~~~~~~~~~~~~~~~~ 131 (142)
...|++++.||+|.. ..+++..+. ....++.+|+..+.|++.|...+...+--. ......+.+.++....+
T Consensus 248 ~~~p~i~v~nKid~~----~~eele~l~---~~~~~~~is~~~e~gLd~Li~~~y~~L~Li~~fT~g~~E~rawt~~~~~ 320 (376)
T 4a9a_A 248 RYMPAIYVLNKIDSL----SIEELELLY---RIPNAVPISSGQDWNLDELLQVMWDRLNLVRIYTKPKGQIPDFTDPVVL 320 (376)
T ss_dssp EEECEEEEEECGGGS----CHHHHHHHT---TSTTEEECCTTTCTTHHHHHHHHHHHHCCEEEEECCSSSCCCSSSCEEE
T ss_pred hccceEEEEeccccc----CHHHHHHHh---cccchhhhhhhhcccchhHHHHHHHHcCCcEEEeCCCCCcCCCCccccc
Confidence 467999999999964 344443332 223478899999999999888877666321 11123333345555555
Q ss_pred cCC
Q psy10891 132 SGP 134 (142)
Q Consensus 132 ~~~ 134 (142)
..|
T Consensus 321 ~a~ 323 (376)
T 4a9a_A 321 RSD 323 (376)
T ss_dssp BTT
T ss_pred cCC
Confidence 544
No 231
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=78.75 E-value=5 Score=27.84 Aligned_cols=45 Identities=16% Similarity=0.228 Sum_probs=29.0
Q ss_pred hccCCEEEEEEeCC-ChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 16 YKDAHGCIIMFDLT-NQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 16 ~~~ad~ii~v~d~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
...++++++++|.. .+.+-.+ ...+..+. ..+++|+|.+|+|...
T Consensus 109 iaRal~~lllldep~~gL~~lD-~~~l~~L~--------~~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 109 DTRVHCCLYFISPTGHSLRPLD-LEFMKHLS--------KVVNIIPVIAKADTMT 154 (270)
T ss_dssp CCSCCEEEEEECCCSSSCCHHH-HHHHHHHH--------TTSEEEEEETTGGGSC
T ss_pred hheeeeeeEEEecCCCcCCHHH-HHHHHHHH--------hcCcEEEEEeccccCC
Confidence 34578999999854 3322222 23444443 2389999999999865
No 232
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=77.82 E-value=4.2 Score=27.78 Aligned_cols=42 Identities=10% Similarity=0.047 Sum_probs=28.7
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEE-EEEeCCCC
Q psy10891 18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCM-LLANKCDL 67 (142)
Q Consensus 18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~D~ 67 (142)
.+|.+|++...+. .+...+...+..+.. .+.+++ +|.|+.|.
T Consensus 152 ~aD~viiv~~~~~-~s~~~~~~~~~~l~~-------~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 152 KPTGVVVVSTPQE-LTAVIVEKAINMAEE-------TNTSVLGLVENMSYF 194 (262)
T ss_dssp CCSEEEEEECSSS-CCHHHHHHHHHHHHT-------TTCCEEEEEETTCCE
T ss_pred cCCeEEEEecCcc-chHHHHHHHHHHHHh-------CCCCEEEEEECCCcc
Confidence 6899999987664 355555566665531 256776 89999873
No 233
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=75.19 E-value=11 Score=25.49 Aligned_cols=64 Identities=8% Similarity=-0.009 Sum_probs=35.7
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEE-EEEeCCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCM-LLANKCDLP 68 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~D~~ 68 (142)
|||+.-. ......+..+|.+|+++..+. .+...+..++..+..... ....+.+++ +|.|+.+..
T Consensus 118 D~pp~~~--~~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~-~~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 118 DAPPSLS--PLTLNALAAAEGVVVPVQAEY-YALEGVAGLLATLEEVRA-GLNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp ECCSSCC--HHHHHHHHHCSEEEEEEESST-HHHHHHHHHHHHHHHHHH-HTCTTCEEEEEEEESBCTT
T ss_pred eCCCCCC--HHHHHHHHHCCeEEEEecCch-HHHHHHHHHHHHHHHHHH-HhCCCceEEEEEEEeECCC
Confidence 5555432 223345567999999998764 355544444444321110 012456664 899999853
No 234
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=74.88 E-value=8.1 Score=25.64 Aligned_cols=61 Identities=21% Similarity=0.075 Sum_probs=37.5
Q ss_pred hHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcC
Q psy10891 12 TRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHN 85 (142)
Q Consensus 12 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~ 85 (142)
....+..+|.+++++..+ ..+...+..+...+... .-..+.+|.|+.+. ......+.+.++
T Consensus 147 ~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~------~~~~~~~v~N~~~~------~~~~~~~~~~~~ 207 (254)
T 3kjh_A 147 TRGTAKAVDMMIAVIEPN-LNSIKTGLNIEKLAGDL------GIKKVRYVINKVRN------IKEEKLIKKHLP 207 (254)
T ss_dssp CHHHHTTCSEEEEEECSS-HHHHHHHHHHHHHHHHH------TCSCEEEEEEEECC------HHHHHHHHHHSC
T ss_pred HHHHHHHCCEEEEecCCC-HHHHHHHHHHHHHHHHc------CCccEEEEEeCCCC------hhHHHHHHHHhc
Confidence 445567899999999874 45666665555544321 12457889999873 223444555555
No 235
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=72.26 E-value=8.5 Score=25.84 Aligned_cols=64 Identities=14% Similarity=0.009 Sum_probs=37.8
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhccc--CCCCCCCEEEEEeCCCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTL--SDGSPIPCMLLANKCDL 67 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~p~ilv~nK~D~ 67 (142)
|||+.- .......+..+|.+|+++..+ ..+...+..++..+...... .......+-+|.|+.+.
T Consensus 120 D~p~~~--~~~~~~~l~~ad~vi~v~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 120 DSPAGI--ETGALMALYFADEAIITTNPE-VSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp ECCSSS--SHHHHHHHHTCSEEEEEECSS-HHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred cCCCCC--CHHHHHHHHhCCEEEEEecCC-hhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 555532 234455667899999999864 55666666666666311100 00022467889999874
No 236
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=70.12 E-value=7.2 Score=30.45 Aligned_cols=56 Identities=13% Similarity=0.139 Sum_probs=31.2
Q ss_pred hhhhhhHhhhccC-CEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 7 RFTWMTRVYYKDA-HGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 7 ~~~~~~~~~~~~a-d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
....+...|+.+. .+++++.+.+....-.....+...+ ...+.+.|+|.||.|+..
T Consensus 172 ~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v-------~~~g~rtI~VlTK~Dlv~ 228 (608)
T 3szr_A 172 KIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEV-------DPEGDRTIGILTKPDLVD 228 (608)
T ss_dssp HHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHH-------CSSCCSEEEEEECGGGSS
T ss_pred HHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHH-------hhcCCceEEEecchhhcC
Confidence 4445666666554 4555555543221212223444444 335678999999999754
No 237
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=69.42 E-value=5.2 Score=29.79 Aligned_cols=59 Identities=15% Similarity=-0.029 Sum_probs=37.3
Q ss_pred CCCEEEEEeCCCCC-------C-CCCCHHH----HHHHH----HHcC--CceEEEeec--cCCCCHHHHHHHHHHHHHH
Q psy10891 55 PIPCMLLANKCDLP-------H-RQVDIND----IECFY----KEHN--FIGWTETST--KEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 55 ~~p~ilv~nK~D~~-------~-~~~~~~~----~~~~~----~~~~--~~~~~~~Sa--~~~~~i~~l~~~l~~~~~~ 113 (142)
+.|+++|.||.|+. . ....... +..++ ...+ ...++.+|+ ..+.|++++.+.+...+.+
T Consensus 175 ~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpe 253 (413)
T 1tq4_A 175 KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI 253 (413)
T ss_dssp TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCcc
Confidence 68999999999863 1 1122222 23332 1222 234788899 6666799999999877644
No 238
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=68.32 E-value=9.5 Score=27.34 Aligned_cols=70 Identities=10% Similarity=-0.072 Sum_probs=40.0
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCC
Q psy10891 18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEG 97 (142)
Q Consensus 18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 97 (142)
..|-.+++.|..... .+...+..+... .+ ..+++.||.|... ..-....+....+ .|+.+++ +|
T Consensus 241 ~~de~llvLDa~t~~---~~~~~~~~~~~~------~~-it~iilTKlD~~a---~~G~~l~~~~~~~-~pi~~i~--~G 304 (328)
T 3e70_C 241 KPNLVIFVGDALAGN---AIVEQARQFNEA------VK-IDGIILTKLDADA---RGGAALSISYVID-APILFVG--VG 304 (328)
T ss_dssp CCSEEEEEEEGGGTT---HHHHHHHHHHHH------SC-CCEEEEECGGGCS---CCHHHHHHHHHHT-CCEEEEE--CS
T ss_pred cCCCCEEEEecHHHH---HHHHHHHHHHHh------cC-CCEEEEeCcCCcc---chhHHHHHHHHHC-CCEEEEe--CC
Confidence 478899999976542 222333333211 12 2377889999632 1223344566667 5677777 77
Q ss_pred CCHHHH
Q psy10891 98 LMVNDS 103 (142)
Q Consensus 98 ~~i~~l 103 (142)
++++++
T Consensus 305 e~v~dl 310 (328)
T 3e70_C 305 QGYDDL 310 (328)
T ss_dssp SSTTCE
T ss_pred CCcccc
Confidence 766543
No 239
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=68.16 E-value=24 Score=23.66 Aligned_cols=65 Identities=9% Similarity=-0.069 Sum_probs=39.6
Q ss_pred hHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCC
Q psy10891 12 TRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNF 86 (142)
Q Consensus 12 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~ 86 (142)
....+..+|.+|+++..+ ..+...+..++..+... ....+-+|.|+.+.... ......+.+.++.
T Consensus 126 ~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~------~~~~~~vv~N~~~~~~~---~~~~~~~~~~~~~ 190 (263)
T 1hyq_A 126 AVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERL------GTKVLGVVVNRITTLGI---EMAKNEIEAILEA 190 (263)
T ss_dssp HHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHH------TCEEEEEEEEEECTTTH---HHHHHHHHHHTTS
T ss_pred HHHHHHHCCEEEEEeCCC-hhHHHHHHHHHHHHHhc------CCCeeEEEEccCCcccc---cchHHHHHHHhCC
Confidence 344567899999998764 44666666666666422 12345688999985321 1344555666663
No 240
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=67.59 E-value=12 Score=24.05 Aligned_cols=39 Identities=10% Similarity=0.084 Sum_probs=27.1
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEE
Q psy10891 15 YYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLA 62 (142)
Q Consensus 15 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~ 62 (142)
.+++||++|.++|...+.+....+-=+... .++|++++-
T Consensus 78 ~i~~aD~vVA~ldg~~~D~GTa~EiGyA~a---------lgKPVv~l~ 116 (167)
T 1s2d_A 78 GISNATCGVFLYDMDQLDDGSAFXIGFMRA---------MHKPVILVP 116 (167)
T ss_dssp HHHHCSEEEEEEESSSCCHHHHHHHHHHHH---------TTCCEEEEE
T ss_pred HHHhCCEEEEECCCCCCCCCceeehhhHhh---------CCCeEEEEE
Confidence 357999999999987776666544222222 489998874
No 241
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=63.50 E-value=14 Score=26.26 Aligned_cols=68 Identities=15% Similarity=0.110 Sum_probs=37.0
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccC
Q psy10891 18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKE 96 (142)
Q Consensus 18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 96 (142)
.+|.+++|++.... ...+... ..+ . ...+ .=+|.||.|...+ ......+....+ .|+.+++ .
T Consensus 227 ~~d~vllVl~a~~~--~~~l~~~-~~~---~-----~~~~i~GvVltk~d~~~~---~g~~~~~~~~~~-~Pi~~i~--~ 289 (320)
T 1zu4_A 227 APHEVLLVIDATTG--QNGVIQA-EEF---S-----KVADVSGIILTKMDSTSK---GGIGLAIKELLN-IPIKMIG--V 289 (320)
T ss_dssp CCSEEEEEEEGGGT--HHHHHHH-HHH---T-----TTSCCCEEEEECGGGCSC---TTHHHHHHHHHC-CCEEEEE--C
T ss_pred CCceEEEEEECCCc--HHHHHHH-HHH---h-----hcCCCcEEEEeCCCCCCc---hhHHHHHHHHHC-cCEEEEe--C
Confidence 47899999998743 2222221 222 1 2233 2478899996432 124445666677 5666654 4
Q ss_pred CCCHHH
Q psy10891 97 GLMVND 102 (142)
Q Consensus 97 ~~~i~~ 102 (142)
|+++++
T Consensus 290 Ge~~~d 295 (320)
T 1zu4_A 290 GEKVDD 295 (320)
T ss_dssp SSSTTC
T ss_pred CCCccc
Confidence 555443
No 242
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=63.40 E-value=19 Score=23.69 Aligned_cols=50 Identities=6% Similarity=-0.005 Sum_probs=33.2
Q ss_pred hHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC
Q psy10891 12 TRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP 68 (142)
Q Consensus 12 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 68 (142)
....+..+|.+|+++..+ ..+...+...+..+... ....+-+|.|+.+..
T Consensus 127 ~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~------~~~~~~vv~N~~~~~ 176 (237)
T 1g3q_A 127 AMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKA------GLAILGFVLNRYGRS 176 (237)
T ss_dssp HHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHT------TCEEEEEEEEEETSC
T ss_pred HHHHHHHCCeEEEEecCC-cccHHHHHHHHHHHHhC------CCceEEEEEecCCcc
Confidence 445667899999999765 45666666666666421 123456889998854
No 243
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=58.04 E-value=7.8 Score=28.61 Aligned_cols=42 Identities=14% Similarity=0.114 Sum_probs=29.1
Q ss_pred CCCEEEEEeCCCCC---CCCCCHHHHHHHHHHcC-CceEEEeeccC
Q psy10891 55 PIPCMLLANKCDLP---HRQVDINDIECFYKEHN-FIGWTETSTKE 96 (142)
Q Consensus 55 ~~p~ilv~nK~D~~---~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~ 96 (142)
..|++.++|+.|.. +.....+.+..++...+ ..+++.+||..
T Consensus 224 ~kp~~y~~Nv~e~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~sa~~ 269 (392)
T 1ni3_A 224 AKPVIYLVNMSERDFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAF 269 (392)
T ss_dssp GSCEEEEEECCHHHHTTTCCSSHHHHHHHHHTTSTTCCEEEECHHH
T ss_pred cCceEEEEEecchhhcccchHHHHHHHHHHHhcCCCCeEEEEEhHH
Confidence 58999999998831 11334666777777654 13588999886
No 244
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=57.73 E-value=27 Score=24.69 Aligned_cols=69 Identities=14% Similarity=0.101 Sum_probs=36.9
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCC
Q psy10891 18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEG 97 (142)
Q Consensus 18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 97 (142)
..+.+++|+|..... +.+.. ...+... .++ .-+|.||.|...+ --.+..+....+ .|+.+++ .|
T Consensus 222 ~p~~vllVlda~t~~--~~l~~-a~~~~~~------~~i-~gvVlTk~D~~~~---gG~~l~~~~~~~-~Pi~~i~--~G 285 (306)
T 1vma_A 222 APHETLLVIDATTGQ--NGLVQ-AKIFKEA------VNV-TGIILTKLDGTAK---GGITLAIARELG-IPIKFIG--VG 285 (306)
T ss_dssp CCSEEEEEEEGGGHH--HHHHH-HHHHHHH------SCC-CEEEEECGGGCSC---TTHHHHHHHHHC-CCEEEEE--CS
T ss_pred CCcEEEEEEECCCCH--HHHHH-HHHHHhc------CCC-CEEEEeCCCCccc---hHHHHHHHHHHC-CCEEEEe--CC
Confidence 478899999986431 12221 1222211 122 3456799996432 223455666777 5677665 45
Q ss_pred CCHHH
Q psy10891 98 LMVND 102 (142)
Q Consensus 98 ~~i~~ 102 (142)
+.+++
T Consensus 286 e~~~d 290 (306)
T 1vma_A 286 EKAED 290 (306)
T ss_dssp SSGGG
T ss_pred CChhh
Confidence 44444
No 245
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=55.85 E-value=37 Score=23.92 Aligned_cols=70 Identities=7% Similarity=-0.006 Sum_probs=36.8
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeecc
Q psy10891 16 YKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTK 95 (142)
Q Consensus 16 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 95 (142)
....+.++++.|........ ..+..+.... ++ .+++.||.|...+. -.+..+....+ .|+.+++
T Consensus 218 ~~~P~~~lLvLDa~t~~~~~---~~~~~~~~~~------~~-t~iivTh~d~~a~g---g~~l~i~~~~~-~pi~~ig-- 281 (304)
T 1rj9_A 218 PEEPKEVWLVLDAVTGQNGL---EQAKKFHEAV------GL-TGVIVTKLDGTAKG---GVLIPIVRTLK-VPIKFVG-- 281 (304)
T ss_dssp TTCCSEEEEEEETTBCTHHH---HHHHHHHHHH------CC-SEEEEECTTSSCCC---TTHHHHHHHHC-CCEEEEE--
T ss_pred cCCCCeEEEEEcHHHHHHHH---HHHHHHHHHc------CC-cEEEEECCcccccc---cHHHHHHHHHC-CCeEEEe--
Confidence 34678888899987553222 2222222111 22 46788998854321 12234455566 5566665
Q ss_pred CCCCHH
Q psy10891 96 EGLMVN 101 (142)
Q Consensus 96 ~~~~i~ 101 (142)
+|++++
T Consensus 282 ~Ge~~~ 287 (304)
T 1rj9_A 282 VGEGPD 287 (304)
T ss_dssp CSSSTT
T ss_pred CCCChh
Confidence 444443
No 246
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=55.42 E-value=14 Score=23.43 Aligned_cols=42 Identities=5% Similarity=-0.236 Sum_probs=27.4
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCC
Q psy10891 15 YYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKC 65 (142)
Q Consensus 15 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~ 65 (142)
.+++||++|.++|...+.+....+-=+... .++|++++....
T Consensus 75 ~i~~aD~vvA~ldg~~~D~GT~~EiGyA~A---------~gkPVv~~~~~~ 116 (157)
T 1f8y_A 75 GIKTNDIMLGVYIPDEEDVGLGMELGYALS---------QGKYVLLVIPDE 116 (157)
T ss_dssp HHHTSSEEEEECCGGGCCHHHHHHHHHHHH---------TTCEEEEEECGG
T ss_pred HHHhCCEEEEEcCCCCCCccHHHHHHHHHH---------CCCeEEEEEcCC
Confidence 357999999999876555555544222222 489998876543
No 247
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=55.24 E-value=22 Score=22.82 Aligned_cols=41 Identities=10% Similarity=-0.046 Sum_probs=25.5
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeC
Q psy10891 15 YYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANK 64 (142)
Q Consensus 15 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 64 (142)
.+..+|++|.++|...+.+....+-=+..- .++|++++.+-
T Consensus 66 ~i~~aD~viA~ldg~~~D~Gt~~EiG~A~a---------~gkPVi~~~~D 106 (162)
T 3ehd_A 66 NVLASDLLVALLDGPTIDAGVASEIGVAYA---------KGIPVVALYTD 106 (162)
T ss_dssp HHHTCSEEEEECCSSSCCHHHHHHHHHHHH---------TTCCEEEECCC
T ss_pred HHHHCCEEEEECCCCCCCCCHHHHHHHHHH---------CCCEEEEEEcC
Confidence 367999999999876444444433212221 37898777653
No 248
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=53.63 E-value=32 Score=25.72 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=23.6
Q ss_pred HhhhccCCEEEEEEeCCChhhHHHHHHHHHHHH
Q psy10891 13 RVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVD 45 (142)
Q Consensus 13 ~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~ 45 (142)
..++..+.+.++|+|.++. +......|+..+.
T Consensus 115 ~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~ 146 (469)
T 1bif_A 115 RKFLSEEGGHVAVFDATNT-TRERRAMIFNFGE 146 (469)
T ss_dssp HHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHH
Confidence 5667678899999999987 5555567766654
No 249
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=52.26 E-value=11 Score=23.19 Aligned_cols=41 Identities=17% Similarity=0.079 Sum_probs=23.2
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCC
Q psy10891 17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDL 67 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 67 (142)
..+.++|+.-|++.+.....+..+... .++|++.+.+|.+|
T Consensus 39 gka~LViiA~D~~p~~~~~~i~~lc~~----------~~Ip~~~v~sk~~L 79 (126)
T 2xzm_U 39 KQALFVCVAEDCDQGNYVKLVKALCAK----------NEIKYVSVPKRASL 79 (126)
T ss_dssp TCCSEEEEESSCCSTTHHHHHHHHHHH----------TTCCEEEESCSHHH
T ss_pred CCceEEEEeCCCChHHHHHHHHHHHHH----------hCCCEEEECCHHHH
Confidence 356777777776654443333333222 37888877766554
No 250
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=51.76 E-value=40 Score=25.84 Aligned_cols=69 Identities=13% Similarity=0.022 Sum_probs=36.1
Q ss_pred CCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCCC
Q psy10891 19 AHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGL 98 (142)
Q Consensus 19 ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 98 (142)
.+-++||.|.+...... .....+... .++. .+|+||.|-.. ..-.+..++..++ .|+.++. +|+
T Consensus 412 P~evLLvLDattGq~al---~~ak~f~~~------~~it-gvIlTKLD~ta---kgG~~lsi~~~~~-~PI~fig--~Ge 475 (503)
T 2yhs_A 412 PHEVMLTIDASTGQNAV---SQAKLFHEA------VGLT-GITLTKLDGTA---KGGVIFSVADQFG-IPIRYIG--VGE 475 (503)
T ss_dssp SSEEEEEEEGGGTHHHH---HHHHHHHHH------TCCS-EEEEECGGGCS---CCTHHHHHHHHHC-CCEEEEE--CSS
T ss_pred CCeeEEEecCcccHHHH---HHHHHHHhh------cCCC-EEEEEcCCCcc---cccHHHHHHHHHC-CCEEEEe--cCC
Confidence 56788899876542211 122222211 1233 56899998532 1223445566667 5566654 565
Q ss_pred CHHHH
Q psy10891 99 MVNDS 103 (142)
Q Consensus 99 ~i~~l 103 (142)
+++++
T Consensus 476 ~vdDL 480 (503)
T 2yhs_A 476 RIEDL 480 (503)
T ss_dssp SGGGE
T ss_pred Chhhc
Confidence 55443
No 251
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=51.41 E-value=16 Score=25.21 Aligned_cols=46 Identities=13% Similarity=0.137 Sum_probs=29.2
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEE-EEEeCCCCC
Q psy10891 15 YYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCM-LLANKCDLP 68 (142)
Q Consensus 15 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i-lv~nK~D~~ 68 (142)
....+|.+|+|+.... .+...+...+..+.. .+.+++ +|.|+.|..
T Consensus 211 l~~~aD~vilVv~~~~-~~~~~~~~~~~~l~~-------~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 211 FSKFTGNVVYVVNSEN-NNKDEVKKGKELIEA-------TGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HHHHHCEEEEEEETTS-CCHHHHHHHHHHHHT-------TTCEEEEEEEEEECC-
T ss_pred HHHHCCEEEEEEeCCC-CcHHHHHHHHHHHHh-------CCCCEEEEEEeCCcCC
Confidence 3456899999998754 345555555555531 245655 889998853
No 252
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=48.51 E-value=24 Score=25.99 Aligned_cols=30 Identities=3% Similarity=-0.088 Sum_probs=21.0
Q ss_pred CCCcchh-------hhhhhHhhhccCCEEEEEEeCCC
Q psy10891 1 MTEGQER-------FTWMTRVYYKDAHGCIIMFDLTN 30 (142)
Q Consensus 1 Dt~G~e~-------~~~~~~~~~~~ad~ii~v~d~~~ 30 (142)
||||... +......+++++|++++|+|+.+
T Consensus 91 D~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 91 DIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred eccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 7788432 33334556789999999999864
No 253
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=48.33 E-value=42 Score=24.99 Aligned_cols=58 Identities=14% Similarity=0.093 Sum_probs=31.8
Q ss_pred CCCcchhhh-hhhH-----hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCC
Q psy10891 1 MTEGQERFT-WMTR-----VYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPH 69 (142)
Q Consensus 1 Dt~G~e~~~-~~~~-----~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~ 69 (142)
||||.-.+. .+.. ..+..++.+++|+|+...... ......+. ..++ .-+|.||.|...
T Consensus 190 DTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~---~~~~~~f~--------~~l~i~gvVlnK~D~~~ 254 (433)
T 2xxa_A 190 DTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDA---ANTAKAFN--------EALPLTGVVLTKVDGDA 254 (433)
T ss_dssp ECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTH---HHHHHHHH--------HHSCCCCEEEECTTSSS
T ss_pred ECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHH---HHHHHHHh--------ccCCCeEEEEecCCCCc
Confidence 788854332 1221 123478999999998754322 22222332 1234 246899999743
No 254
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=48.30 E-value=82 Score=23.45 Aligned_cols=61 Identities=11% Similarity=0.035 Sum_probs=33.7
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEee
Q psy10891 18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETS 93 (142)
Q Consensus 18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 93 (142)
.+|.+++|+|..... ........+. ...+ .-+|.||.|...+ ......+....+ .|+.++.
T Consensus 210 ~pd~vlLVvDa~tgq---~av~~a~~f~--------~~l~i~GVIlTKlD~~~~---~g~alsi~~~~g-~PI~flg 271 (425)
T 2ffh_A 210 GPDEVLLVLDAMTGQ---EALSVARAFD--------EKVGVTGLVLTKLDGDAR---GGAALSARHVTG-KPIYFAG 271 (425)
T ss_dssp CCSEEEEEEEGGGTT---HHHHHHHHHH--------HHTCCCEEEEESGGGCSS---CHHHHHHHHHHC-CCEEEEE
T ss_pred CCceEEEEEeccchH---HHHHHHHHHH--------hcCCceEEEEeCcCCccc---HHHHHHHHHHHC-CCEEEEe
Confidence 589999999986432 2122222322 1233 4568899986431 223344556666 5566655
No 255
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=47.41 E-value=27 Score=24.01 Aligned_cols=27 Identities=19% Similarity=0.132 Sum_probs=18.7
Q ss_pred CCCcchhhhhhhHhhhccCCEEEEEEeCC
Q psy10891 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLT 29 (142)
Q Consensus 1 Dt~G~e~~~~~~~~~~~~ad~ii~v~d~~ 29 (142)
|||+.- .......+..+|.+|+++..+
T Consensus 110 D~p~~~--~~~~~~~l~~aD~viiv~~~~ 136 (286)
T 2xj4_A 110 DTPGGD--SAITRMAHGRADLVVTPMNDS 136 (286)
T ss_dssp ECCSSC--CHHHHHHHHTCSEEEEEEESS
T ss_pred cCCCCc--cHHHHHHHHHCCEEEEEEcCC
Confidence 555543 334556678899999999875
No 256
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=46.44 E-value=58 Score=22.68 Aligned_cols=67 Identities=7% Similarity=-0.071 Sum_probs=33.3
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccC
Q psy10891 18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKE 96 (142)
Q Consensus 18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 96 (142)
.++.+++|+|.... .+.+ .....+. +..+ .-+|.||.|... .......+....+ .|+.+++ .
T Consensus 210 ~~~~~~lv~~~~~~--~~~~-~~~~~~~--------~~~~i~givlnk~d~~~---~~g~~~~~~~~~~-~pi~~i~--~ 272 (295)
T 1ls1_A 210 GPDEVLLVLDAMTG--QEAL-SVARAFD--------EKVGVTGLVLTKLDGDA---RGGAALSARHVTG-KPIYFAG--V 272 (295)
T ss_dssp CCSEEEEEEEGGGT--HHHH-HHHHHHH--------HHTCCCEEEEECGGGCS---SCHHHHHHHHHHC-CCEEEEC---
T ss_pred CCCEEEEEEeCCCc--HHHH-HHHHHHh--------hcCCCCEEEEECCCCCc---cHHHHHHHHHHHC-cCEEEEe--C
Confidence 58888999997632 1111 1122221 1223 346899998643 2224445566667 5676665 4
Q ss_pred CCCHH
Q psy10891 97 GLMVN 101 (142)
Q Consensus 97 ~~~i~ 101 (142)
|++++
T Consensus 273 g~~~~ 277 (295)
T 1ls1_A 273 SEKPE 277 (295)
T ss_dssp -----
T ss_pred CCCcc
Confidence 44443
No 257
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=45.78 E-value=17 Score=21.82 Aligned_cols=42 Identities=19% Similarity=0.131 Sum_probs=25.9
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCC
Q psy10891 17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLP 68 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~ 68 (142)
..+.++++.-|++...-...+..+... .++|++.+.+|.+|.
T Consensus 40 gka~LVvIA~D~~p~~i~~~l~~lC~~----------~~VP~~~v~sk~~LG 81 (113)
T 3jyw_G 40 KKAKLVLIANDVDPIELVVFLPALCKK----------MGVPYAIVKGKARLG 81 (113)
T ss_dssp TCCSEEEECSCCSSHHHHTTHHHHHHH----------TTCCCEECSCSTTTH
T ss_pred CCceEEEEeCCCCHHHHHHHHHHHHHH----------cCCCEEEECCHHHHH
Confidence 467777777776543222223333222 389999999998874
No 258
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=43.80 E-value=28 Score=23.96 Aligned_cols=68 Identities=12% Similarity=0.049 Sum_probs=36.6
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCE-EEEEeCCCCCCCCCCHHHHHHHHHHcC
Q psy10891 15 YYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPC-MLLANKCDLPHRQVDINDIECFYKEHN 85 (142)
Q Consensus 15 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D~~~~~~~~~~~~~~~~~~~ 85 (142)
.+..+|.+|+++..+. .+...+..++..+....+ ....+.++ -+|.|+.|... ......+..+.+.++
T Consensus 173 ~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~-~~~~~~~~~gvv~n~~~~~~-~~~~~~~~~~~~~~~ 241 (298)
T 2oze_A 173 AIVASDYVMIPLQAEE-ESTNNIQNYISYLIDLQE-QFNPGLDMIGFVPYLVDTDS-ATIKSNLEELYKQHK 241 (298)
T ss_dssp HHHHCSEEEEEECGGG-CCHHHHHHHHHHHHHHHH-HHCTTCEEEEEEEEESCTTC-HHHHHHHHHHHHHTT
T ss_pred HHHHCCeEEEEecCcH-HHHHHHHHHHHHHHHHHH-HhCCCCeEEEEEEEEECCCc-HHHHHHHHHHHHHhc
Confidence 4446999999997653 345544444444332100 01135664 48899998632 122344555566655
No 259
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=43.53 E-value=71 Score=21.35 Aligned_cols=63 Identities=11% Similarity=0.078 Sum_probs=38.3
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCE-EEEEeCCCCCCCCCCHHHHHHHHHHcCC
Q psy10891 17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPC-MLLANKCDLPHRQVDINDIECFYKEHNF 86 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D~~~~~~~~~~~~~~~~~~~~ 86 (142)
..+|.+|++...+ ..+...+..++..+.... ...+.++ -+|.|+.+. .........+.+.++.
T Consensus 139 ~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~---~~~~~~~~gvv~N~~~~---~~~~~~~~~l~~~~~~ 202 (269)
T 1cp2_A 139 GKAQEIYIVASGE-MMALYAANNISKGIQKYA---KSGGVRLGGIICNSRKV---ANEYELLDAFAKELGS 202 (269)
T ss_dssp TSCCEEEEEECSS-HHHHHHHHHHHHHHHHHB---TTBBCEEEEEEEECCSS---SCCHHHHHHHHHHHTC
T ss_pred hhCCEEEEeecCc-hhhHHHHHHHHHHHHHHH---hcCCCcEEEEEeecCCc---chhHHHHHHHHHHcCC
Confidence 4689999998764 456666666665554322 1124554 578899863 2234555666666663
No 260
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=42.68 E-value=37 Score=22.10 Aligned_cols=69 Identities=6% Similarity=0.037 Sum_probs=40.0
Q ss_pred hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHH-HHHHHHHcCCc
Q psy10891 14 VYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDIND-IECFYKEHNFI 87 (142)
Q Consensus 14 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~-~~~~~~~~~~~ 87 (142)
.-+..||++|++.-.-+..---.++.|+..+. ...-.++|++++++- .........+. ++.++...+..
T Consensus 81 ~~i~~AD~ivi~sP~Y~~~~~~~lK~~iD~~~----~~~l~gK~~~~v~t~-G~~~~~~~~~~~L~~il~~lg~~ 150 (191)
T 3k1y_A 81 SALSASDGLVVATPVFKASYTGLFKMFFDILD----TDALTGMPTIIAATA-GSARHSLVLDYALRPLLSYMRAV 150 (191)
T ss_dssp HHHHHCSEEEEEEECBTTBSCHHHHHHHHHSC----TTTTTTCEEEEEEEE-SSSTTTTHHHHTHHHHHHHTTCE
T ss_pred HHHHHCCEEEEEcCccCCcCcHHHHHHHHHhh----hhhcCCCEEEEEEeC-CCcchhhHHHHHHHHHHHHCCCE
Confidence 34568999999987765433344556666652 123367888888873 21111111122 66677777753
No 261
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=41.47 E-value=39 Score=21.50 Aligned_cols=42 Identities=7% Similarity=-0.089 Sum_probs=25.0
Q ss_pred hhhccCCEEEEEEeC---CChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeC
Q psy10891 14 VYYKDAHGCIIMFDL---TNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANK 64 (142)
Q Consensus 14 ~~~~~ad~ii~v~d~---~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 64 (142)
..++++|++|.++|. ..+.+....+-=+... .++|++++.+.
T Consensus 63 ~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~A---------lgKPVi~l~~d 107 (161)
T 2f62_A 63 QMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAA---------LNKMVLTFTSD 107 (161)
T ss_dssp HHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHH---------TTCEEEEECSC
T ss_pred HHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHH---------CCCEEEEEEcC
Confidence 456789999999983 2333333322212222 48999887654
No 262
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=41.16 E-value=49 Score=21.60 Aligned_cols=72 Identities=8% Similarity=-0.135 Sum_probs=41.4
Q ss_pred hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCC
Q psy10891 14 VYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNF 86 (142)
Q Consensus 14 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~ 86 (142)
.-+..||++|++.-.-+..---.+++|+..+... ....-.++|+.++++---..........++.++...+.
T Consensus 69 ~~i~~AD~iVi~tP~Y~~s~p~~LK~~iD~~~~~-~~~~l~gK~v~~v~tsgg~~g~~~a~~~Lr~il~~lg~ 140 (199)
T 4hs4_A 69 QQIATADAVVIVTPEYNYSVPGVLKNAIDWLSRV-SPQPLAGKPVALVTASPGMIGGARAQNHLRQSLVFLDA 140 (199)
T ss_dssp HHHHHSSEEEEEECCBTTBCCHHHHHHHHHHTTS-SSCTTTTCEEEEEEECSSSSCSHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCEEEEEcCccCCCcCHHHHHHHHHhccc-CCcccCCCEEEEEEeCCCCcccHHHHHHHHHHHHHcCC
Confidence 3467899999998776543223455676666420 01123678998888753211111224556667777775
No 263
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=38.26 E-value=82 Score=21.82 Aligned_cols=48 Identities=4% Similarity=-0.103 Sum_probs=29.3
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC
Q psy10891 15 YYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69 (142)
Q Consensus 15 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~ 69 (142)
....+|++|+|+..... +...+...+..+... ....+-+|.|+.+...
T Consensus 221 l~~~aD~vllVv~~~~~-~~~~~~~~~~~l~~~------g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 221 VGRHVGTTLMVARYAVN-TLKEVETSLSRFEQN------GIPVKGVILNSIFRRA 268 (286)
T ss_dssp HTTTCSEEEEEEETTTS-BHHHHHHHHHHHHHT------TCCCCEEEEEEECCCC
T ss_pred HHHHCCeEEEEEeCCCC-cHHHHHHHHHHHHhC------CCCEEEEEEcCccccc
Confidence 45679999999987643 445555555555321 1223457889988643
No 264
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=38.25 E-value=51 Score=19.59 Aligned_cols=40 Identities=15% Similarity=0.054 Sum_probs=23.6
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEe
Q psy10891 16 YKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63 (142)
Q Consensus 16 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~n 63 (142)
+++++++|+++......+ .|...-... ....++|+|.|--
T Consensus 36 I~~~~~vIvL~G~~t~~s-----~wv~~EI~~---A~~~gkpIigV~~ 75 (111)
T 1eiw_A 36 PEDADAVIVLAGLWGTRR-----DEILGAVDL---ARKSSKPIITVRP 75 (111)
T ss_dssp SSSCSEEEEEGGGTTTSH-----HHHHHHHHH---HTTTTCCEEEECC
T ss_pred cccCCEEEEEeCCCcCCC-----hHHHHHHHH---HHHcCCCEEEEEc
Confidence 568999999987754322 344222211 1346889877654
No 265
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=38.11 E-value=29 Score=22.40 Aligned_cols=68 Identities=9% Similarity=0.002 Sum_probs=38.0
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHH-HHHHHHHHcCCc
Q psy10891 15 YYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDIN-DIECFYKEHNFI 87 (142)
Q Consensus 15 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~-~~~~~~~~~~~~ 87 (142)
.+..+|++||+.-.-...-...++.|+..+ ......+.|++++++ ........... .+..++...|+.
T Consensus 66 ~i~~aD~ii~~sP~y~~~~p~~lK~~ld~l----~~~~~~gK~~~~~~t-gg~~~~~~a~~~~l~~~l~~~g~~ 134 (197)
T 2vzf_A 66 ATCNADGLIVATPIYKASYTGLLKAFLDIL----PQFALAGKAALPLAT-GGSPAHVLALDYGLRPVLHSMGVR 134 (197)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHTTS----CTTTTTTCEEEEEEE-ESSGGGGGHHHHTHHHHHHTTTCS
T ss_pred HHHHCCEEEEEeCccCCCCCHHHHHHHHhc----cccccCCCEEEEEEE-CCCcchhhHHHHHHHHHHHHcCCE
Confidence 466899999998776543223344555444 112235788888887 33221111122 466677777754
No 266
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=37.55 E-value=62 Score=20.46 Aligned_cols=42 Identities=7% Similarity=-0.111 Sum_probs=25.8
Q ss_pred hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCC
Q psy10891 14 VYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCD 66 (142)
Q Consensus 14 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D 66 (142)
..++.||++|..++.-+. ....+-=+..- .++|++++.+..+
T Consensus 73 ~~i~~aD~vva~~~~~d~--Gt~~EiGyA~a---------lgKPVi~l~~~~~ 114 (165)
T 2khz_A 73 NWLQQADVVVAEVTQPSL--GVGYELGRAVA---------LGKPILCLFRPQS 114 (165)
T ss_dssp HHHHHCSEEEEECSSCCH--HHHHHHHHHHH---------TCSSEEEEECTTT
T ss_pred HHHHhCCEEEEECCCCCC--CHHHHHHHHHH---------CCCEEEEEEcCCC
Confidence 456899999998874333 33322112121 4899998876654
No 267
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=37.16 E-value=61 Score=22.63 Aligned_cols=62 Identities=13% Similarity=0.205 Sum_probs=33.0
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEee
Q psy10891 18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETS 93 (142)
Q Consensus 18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 93 (142)
..+.+++|+|.+.. ...+..+...+. .-+. .-+|.||.|... .......++...+ .|+.+++
T Consensus 212 ~~~~~~lVl~at~~--~~~~~~~~~~~~-------~l~~-~giVltk~D~~~---~~g~~~~~~~~~~-~pi~~i~ 273 (296)
T 2px0_A 212 SSIQSFLVLSATAK--YEDMKHIVKRFS-------SVPV-NQYIFTKIDETT---SLGSVFNILAESK-IGVGFMT 273 (296)
T ss_dssp TTEEEEEEEETTBC--HHHHHHHTTTTS-------SSCC-CEEEEECTTTCS---CCHHHHHHHHTCS-CCCSEEC
T ss_pred CCCeEEEEEECCCC--HHHHHHHHHHHh-------cCCC-CEEEEeCCCccc---chhHHHHHHHHHC-cCEEEEE
Confidence 36788899987643 233334433321 1122 345679999743 2224445666666 4555544
No 268
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=36.07 E-value=1e+02 Score=20.96 Aligned_cols=63 Identities=10% Similarity=0.001 Sum_probs=36.4
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCC-EEEEEeCCCCCCCCCCHHHHHHHHHHcCC
Q psy10891 17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIP-CMLLANKCDLPHRQVDINDIECFYKEHNF 86 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~nK~D~~~~~~~~~~~~~~~~~~~~ 86 (142)
..+|.+|+++..+ ..+...+..++..+.... ...+.+ .-+|.|+.+.. ........+.+.++.
T Consensus 142 ~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~---~~~~~~~~gvv~N~~~~~---~~~~~~~~l~~~~g~ 205 (289)
T 2afh_E 142 NKAQEIYIVCSGE-MMAMYAANNISKGIVKYA---NSGSVRLGGLICNSRNTD---REDELIIALANKLGT 205 (289)
T ss_dssp TCCCEEEEEECSS-HHHHHHHHHHHHHHHHHH---TTSCCEEEEEEEECCCCT---THHHHHHHHHHHHTS
T ss_pred hhCCEEEEEecCC-HHHHHHHHHHHHHHHHHH---hcCCCceEEEEEecCCch---hHHHHHHHHHHHcCc
Confidence 4689999988754 456666555555554322 112455 35788988631 223445555666663
No 269
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=34.72 E-value=64 Score=20.96 Aligned_cols=71 Identities=7% Similarity=0.053 Sum_probs=38.3
Q ss_pred HhhhccCCEEEEEEeCCC---hhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCC
Q psy10891 13 RVYYKDAHGCIIMFDLTN---QNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNF 86 (142)
Q Consensus 13 ~~~~~~ad~ii~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~ 86 (142)
...+..||++|++.-.-+ +..+...-.|+.... ....-.++|+.++++-.-...-......++..+...+.
T Consensus 62 ~~~i~~aD~~ii~tPeYn~s~pg~LKn~iDwlsr~~---~~~~~~gKpv~~v~~S~G~~Gg~~a~~~Lr~vl~~lg~ 135 (190)
T 3u7r_A 62 KDRIEHSDAVLAITPEYNRSYPGMIKNAIDWATRPY---GQNSWKGKPAAVIGTSPGVIGAALAQARLKNDLLHVGT 135 (190)
T ss_dssp HHHHHTSSEEEEECCCBTTBCCHHHHHHHHHHHCST---TCCTTTTCEEEEEEEESSTTTTHHHHHHHHHHHHTTTC
T ss_pred HHHHHhCCcEEEechhhcccCCHHHHHHHHHhcccc---cCCccCCCEEEEEEeCCchhhHHHHHHHHHHHHHHcCC
Confidence 445778999999876554 345555555543211 11122578998887643222111123445555566663
No 270
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=34.64 E-value=88 Score=20.62 Aligned_cols=46 Identities=11% Similarity=0.235 Sum_probs=28.0
Q ss_pred hHhhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeC
Q psy10891 12 TRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANK 64 (142)
Q Consensus 12 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 64 (142)
.+.-++++..+|+++.-....+- -..| ++.... ...++|+|+|-..
T Consensus 73 LReRI~~Sk~vIllIs~~T~~s~--~v~w--EIe~Ai---~~~~~PII~Vy~~ 118 (189)
T 3hyn_A 73 LHTRLDNSKNIILFLSSITANSR--ALRE--EMNYGI---GTKGLPVIVIYPD 118 (189)
T ss_dssp HHHHHHTEEEEEEECCTTCCCCH--HHHH--HHHHHT---TTTCCCEEEEETT
T ss_pred HHHHHHhcCcEEEEEecCccccc--hhHH--HHHHHH---HhcCCcEEEEECC
Confidence 34456788899888876554442 2234 554221 2468999888765
No 271
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=34.18 E-value=13 Score=20.75 Aligned_cols=13 Identities=15% Similarity=0.187 Sum_probs=9.4
Q ss_pred CCCEEEEEeCCCC
Q psy10891 55 PIPCMLLANKCDL 67 (142)
Q Consensus 55 ~~p~ilv~nK~D~ 67 (142)
++|++.+.+|.+|
T Consensus 53 ~Ip~~~v~sk~eL 65 (82)
T 3v7e_A 53 GISVSMVESMKKL 65 (82)
T ss_dssp TCCEEEESCHHHH
T ss_pred CCCEEEECCHHHH
Confidence 7888877776554
No 272
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=33.15 E-value=48 Score=22.12 Aligned_cols=72 Identities=10% Similarity=-0.147 Sum_probs=41.0
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCc
Q psy10891 15 YYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFI 87 (142)
Q Consensus 15 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~ 87 (142)
-+..||++||..-+-...-...+..|+..+..........+.|++++++---. ........+..++...|+.
T Consensus 76 ~l~~AD~iI~~sP~y~~~~p~~lK~~iDr~~~~~~~~~l~gK~~~~i~t~g~~-g~~~~~~~l~~~l~~~G~~ 147 (242)
T 1sqs_A 76 ELLESDIIIISSPVYLQNVSVDTKNFIERIGGWSHLFRLAGKFVVTLDVAESN-GSDNVSEYLRDIFSYMGGQ 147 (242)
T ss_dssp HHHHCSEEEEEEEECSSSCCHHHHHHHHHTGGGTTTTTTTTCEEEEEEEESSC-CSCCHHHHHHHHHHHTTCE
T ss_pred HHHHCCEEEEEccccccCCCHHHHHHHHHHHHhccccccCCCEEEEEEeCCCC-chhhHHHHHHHHHHHCCCe
Confidence 35789999999877654333345567666531100012246777777664321 1123455677778878854
No 273
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=31.90 E-value=57 Score=21.13 Aligned_cols=72 Identities=7% Similarity=-0.108 Sum_probs=40.4
Q ss_pred hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCC
Q psy10891 14 VYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNF 86 (142)
Q Consensus 14 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~ 86 (142)
.-+..||++|++.-.-+..---.++.|+..+... ....-.++|+.++++---..........++.++..++.
T Consensus 68 ~~i~~AD~iv~~sP~y~~~~~~~lK~~iD~~~~~-~~~~~~gK~~~~~~~s~g~~gg~~a~~~Lr~~l~~lg~ 139 (193)
T 3svl_A 68 EQIRQADGVVIVTPEYNYSVPGGLKNAIDWLSRL-PDQPLAGKPVLIQTSSMGVIGGARCQYHLRQILVFLDA 139 (193)
T ss_dssp HHHHHSSEEEEEECCBTTBCCHHHHHHHHHHHTS-TTCTTTTCEEEEEEECSSTTTTHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCEEEEEecccCCCCCHHHHHHHHHHhhc-CccccCCCeEEEEEeCCCCcchHHHHHHHHHHHHHCCC
Confidence 3457899999998776543223345566555421 01123578888888743211111234556667777774
No 274
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=31.73 E-value=48 Score=19.50 Aligned_cols=66 Identities=3% Similarity=-0.216 Sum_probs=36.5
Q ss_pred hhccCCEEEEEEeCCChh-hHH-HHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCc
Q psy10891 15 YYKDAHGCIIMFDLTNQN-SFK-NTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFI 87 (142)
Q Consensus 15 ~~~~ad~ii~v~d~~~~~-s~~-~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~ 87 (142)
.+..+|+++++.-.-... +-. .+..++..+.. ...+.++.++++--.. .......+..++...+..
T Consensus 43 ~l~~~d~vi~g~p~y~~~~~~~~~~~~fl~~l~~-----~l~~k~~~~~~t~g~~--~~~~~~~l~~~l~~~g~~ 110 (137)
T 2fz5_A 43 DVASKDVILLGCPAMGSEELEDSVVEPFFTDLAP-----KLKGKKVGLFGSYGWG--SGEWMDAWKQRTEDTGAT 110 (137)
T ss_dssp HHHTCSEEEEECCCBTTTBCCHHHHHHHHHHHGG-----GCSSCEEEEEEEESSC--CSHHHHHHHHHHHHTTCE
T ss_pred HHhcCCEEEEEccccCCCCCCHHHHHHHHHHhhh-----hcCCCEEEEEEecCCC--CchHHHHHHHHHHHCCCE
Confidence 356789999987664321 111 14455555532 1256788888874321 122345566667777754
No 275
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=31.49 E-value=88 Score=21.91 Aligned_cols=58 Identities=9% Similarity=0.137 Sum_probs=38.8
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHH
Q psy10891 17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFY 81 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~ 81 (142)
.++|+++++--.-...+-+.+..++..+-... +.|+++- |--......++.+.+..++
T Consensus 98 ~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~------~lPiilY-n~P~~tg~~l~~~~~~~La 155 (300)
T 3eb2_A 98 LGADGILAILEAYFPLKDAQIESYFRAIADAV------EIPVVIY-TNPQFQRSDLTLDVIARLA 155 (300)
T ss_dssp HTCSEEEEEECCSSCCCHHHHHHHHHHHHHHC------SSCEEEE-ECTTTCSSCCCHHHHHHHH
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHC------CCCEEEE-ECccccCCCCCHHHHHHHH
Confidence 48999999987776667777778888876433 5887754 4322222445677777665
No 276
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=30.79 E-value=83 Score=18.36 Aligned_cols=78 Identities=12% Similarity=0.124 Sum_probs=39.8
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCC
Q psy10891 18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEG 97 (142)
Q Consensus 18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 97 (142)
..|++|+=++..+...+ .++..+.. ....+.+|+|++....+ ..... .+...|...|+. ..
T Consensus 52 ~~dlii~d~~l~~~~g~----~~~~~l~~---~~~~~~~pii~ls~~~~-------~~~~~-~~~~~g~~~~l~----kp 112 (147)
T 2zay_A 52 HPHLIITEANMPKISGM----DLFNSLKK---NPQTASIPVIALSGRAT-------AKEEA-QLLDMGFIDFIA----KP 112 (147)
T ss_dssp CCSEEEEESCCSSSCHH----HHHHHHHT---STTTTTSCEEEEESSCC-------HHHHH-HHHHHTCSEEEE----SS
T ss_pred CCCEEEEcCCCCCCCHH----HHHHHHHc---CcccCCCCEEEEeCCCC-------HHHHH-HHHhCCCCEEEe----CC
Confidence 46766665554433232 23444431 11236788888775543 22222 233456554553 34
Q ss_pred CCHHHHHHHHHHHHHHH
Q psy10891 98 LMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 98 ~~i~~l~~~l~~~~~~~ 114 (142)
....++...+...+...
T Consensus 113 ~~~~~L~~~i~~~~~~~ 129 (147)
T 2zay_A 113 VNAIRLSARIKRVLKLL 129 (147)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 56677776666555444
No 277
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=30.64 E-value=36 Score=21.67 Aligned_cols=67 Identities=3% Similarity=-0.143 Sum_probs=38.2
Q ss_pred hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCc
Q psy10891 14 VYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFI 87 (142)
Q Consensus 14 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~ 87 (142)
.-+..+|++||+.-.-...--..++.|+..+.. .-.+.|++++.+ ..... ......+..++...|+.
T Consensus 80 ~~l~~aD~iI~~sP~y~~~~p~~lK~~iD~~~~-----~l~gK~~~~~~~-G~~~~-~~~~~~l~~~l~~~G~~ 146 (191)
T 1t0i_A 80 RIVNALDIIVFVTPQYNWGYPAALKNAIDRLYH-----EWHGKPALVVSY-GGHGG-SKCNDQLQEVLHGLKMN 146 (191)
T ss_dssp HHHHTCSEEEEEEECBTTBCCHHHHHHHHTCST-----TTTTCEEEEEEE-ETTTT-HHHHHHHHHHHHHTTCE
T ss_pred HHHHhCCEEEEEeceECCCCCHHHHHHHHHHHh-----hcCCCEEEEEEe-CCcch-hhHHHHHHHHHHHCCCE
Confidence 446789999999887654322344566655421 124677777655 22211 11234556667777754
No 278
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=30.35 E-value=65 Score=20.45 Aligned_cols=49 Identities=8% Similarity=-0.183 Sum_probs=29.9
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeC
Q psy10891 15 YYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANK 64 (142)
Q Consensus 15 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK 64 (142)
-+..+|++|+..-.-...-...+..|+..+.... .....+.++.++++-
T Consensus 49 ~l~~aD~ii~gsP~y~g~~~~~lk~fld~~~~~~-~~~l~gk~~~~~~t~ 97 (188)
T 2ark_A 49 DVLWADGLAVGSPTNMGLVSWKMKRFFDDVLGDL-WGEIDGKIACAFSSS 97 (188)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHTGGGT-TTSCTTCEEEEEEEE
T ss_pred HHHhCCEEEEEeCccCCcCCHHHHHHHHHHhhhh-HHHhCCCeEEEEEEC
Confidence 4567999999987765433344566776653200 012357788888874
No 279
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=29.64 E-value=67 Score=20.64 Aligned_cols=73 Identities=7% Similarity=-0.160 Sum_probs=43.1
Q ss_pred hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcc------cCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCc
Q psy10891 14 VYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCT------LSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFI 87 (142)
Q Consensus 14 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~------~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~ 87 (142)
.-+..||++|++.-.-...---.++.|+..+..... ...-.++|++++.+--.. ........++.++...|+.
T Consensus 63 ~~i~~AD~iV~~sP~y~~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg~-g~~~~~~~l~~~l~~~G~~ 141 (192)
T 3fvw_A 63 EEVQEADAIWIFSPVYNYAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGA-SPEEVFEDYRSLLPFIRMH 141 (192)
T ss_dssp HHHHHCSEEEEECCCBTTBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCCC----CCSHHHHHHHHHTTCE
T ss_pred HHHHhCCEEEEECcccccCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCCc-chhHHHHHHHHHHHHcCCe
Confidence 446789999999877654333445677777742100 012356788877776442 2122346677788888853
No 280
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=28.60 E-value=90 Score=21.67 Aligned_cols=46 Identities=4% Similarity=-0.063 Sum_probs=25.9
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCE-EEEEeCCCCC
Q psy10891 15 YYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPC-MLLANKCDLP 68 (142)
Q Consensus 15 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D~~ 68 (142)
....+|.+|+|+..... +...+...+..+.. .+.++ -+|.|+.|..
T Consensus 233 l~~~ad~vilV~~~~~~-~~~~~~~~~~~l~~-------~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 233 VGRSVGTSLLVARFGLN-TAKEVSLSMQRLEQ-------AGVNIKGAILNGVIKR 279 (299)
T ss_dssp HGGGCSEEEEEEETTTS-CTTHHHHHHHHHHH-------TTCCCCCEEEEECCCC
T ss_pred HHHHCCEEEEEEcCCCC-hHHHHHHHHHHHHh-------CCCCeEEEEEeCCccC
Confidence 34568899988876542 33444444444432 13332 3677888753
No 281
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=28.52 E-value=43 Score=21.36 Aligned_cols=71 Identities=7% Similarity=-0.182 Sum_probs=38.7
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCC
Q psy10891 15 YYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNF 86 (142)
Q Consensus 15 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~ 86 (142)
-+..+|++||++-.-...--..++.|+..+.... .....++|+.++++--.-.........+..++...|+
T Consensus 69 ~l~~aD~ii~~sP~y~~~~p~~lK~~iD~~~~~~-~~~l~gK~~~~~~t~gg~~g~~~~~~~l~~~l~~~g~ 139 (193)
T 1rtt_A 69 QIRAADALLFATPEYNYSMAGVLKNAIDWASRPP-EQPFSGKPAAILGASAGRFGTARAQYHLRQTLVFLDV 139 (193)
T ss_dssp HHHHCSEEEEECCEETTEECHHHHHHHHHHTCSS-SCTTTTCEEEEEEECSSTTTTHHHHHHHHHHHHHHTC
T ss_pred HHHhCCEEEEEccccccCcCHHHHHHHHHhcccc-CcccCCCeEEEEEeCCCCCccHHHHHHHHHHHHHcCC
Confidence 4568999999876544322234556776663110 0123578888888763221111123455666666664
No 282
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=28.41 E-value=1.4e+02 Score=21.50 Aligned_cols=19 Identities=0% Similarity=-0.328 Sum_probs=14.0
Q ss_pred hHhhhccCCEEEEEEeCCC
Q psy10891 12 TRVYYKDAHGCIIMFDLTN 30 (142)
Q Consensus 12 ~~~~~~~ad~ii~v~d~~~ 30 (142)
....+..+|.+|++...+.
T Consensus 263 ~~~al~~aD~vliv~~p~~ 281 (403)
T 3ez9_A 263 LLNGLAASDLLLTPTPPAQ 281 (403)
T ss_dssp HHHHHHHCSEEEEEECSSH
T ss_pred HHHHHHHCCEEEEEecCch
Confidence 4445668999999998653
No 283
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=28.31 E-value=1e+02 Score=19.42 Aligned_cols=77 Identities=8% Similarity=-0.131 Sum_probs=38.0
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeec
Q psy10891 15 YYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETST 94 (142)
Q Consensus 15 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 94 (142)
.++.||++|...|. +.+....+-=+... .++|++++.+.. . .......+... ... ..+.+-.
T Consensus 65 ~i~~aD~vvA~l~~--~d~Gt~~EiG~A~a---------lgkPV~~l~~~~-~--~~~ls~mi~G~---~~~-~~~~~~~ 126 (152)
T 4fyk_A 65 WLQQADVVVAEVTQ--PSLGVGYELGRAVA---------LGKPILCLFRPQ-S--GRVLSAMIRGA---ADG-SRFQVWD 126 (152)
T ss_dssp HHHHCSEEEEECSS--CCHHHHHHHHHHHH---------TTCCEEEEECGG-G--SCCCCHHHHHH---CCS-SSEEEEE
T ss_pred HHHHCCEEEEeCCC--CCCCHHHHHHHHHH---------cCCeEEEEEeCC-c--cchhHHHHcCC---CCC-CeEEEEE
Confidence 45789999998773 33333332111121 378998877622 1 11222233221 111 2344433
Q ss_pred cCCCCHHHHHHHHHH
Q psy10891 95 KEGLMVNDSMKFLLD 109 (142)
Q Consensus 95 ~~~~~i~~l~~~l~~ 109 (142)
.....+.++++...+
T Consensus 127 Y~~~el~~il~~f~~ 141 (152)
T 4fyk_A 127 YAEGEVETMLDRYFE 141 (152)
T ss_dssp CCTTCHHHHHHHHHC
T ss_pred ecHHHHHHHHHHHHH
Confidence 334667766666543
No 284
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=28.16 E-value=90 Score=21.67 Aligned_cols=58 Identities=12% Similarity=0.138 Sum_probs=37.7
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEE----eCCCCCCCCCCHHHHHHHHHHcC
Q psy10891 17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLA----NKCDLPHRQVDINDIECFYKEHN 85 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~----nK~D~~~~~~~~~~~~~~~~~~~ 85 (142)
.++|+++++--.-...+-+.+..++..+-.. .+.|+++-- +..+ ++.+.+..+++++.
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a------~~lPiilYn~P~~tg~~-----l~~~~~~~La~~~p 155 (289)
T 2yxg_A 94 VGADAVLSITPYYNKPTQEGLRKHFGKVAES------INLPIVLYNVPSRTAVN-----LEPKTVKLLAEEYS 155 (289)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHH------CSSCEEEEECHHHHSCC-----CCHHHHHHHHHHCT
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHh------cCCCEEEEeCccccCcC-----CCHHHHHHHHHhCC
Confidence 4899999987776666777777788777533 268877533 1333 45666666663444
No 285
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=28.07 E-value=93 Score=21.68 Aligned_cols=58 Identities=14% Similarity=0.251 Sum_probs=38.2
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEE----eCCCCCCCCCCHHHHHHHHHHcC
Q psy10891 17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLA----NKCDLPHRQVDINDIECFYKEHN 85 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~----nK~D~~~~~~~~~~~~~~~~~~~ 85 (142)
.++|+++++--.-...|-+.+..++..+-.. .+.|+++-- +..+ ++.+.+..+++++.
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a------~~lPiilYn~P~~tg~~-----l~~~~~~~La~~~p 155 (294)
T 2ehh_A 94 VGADGALVVVPYYNKPTQRGLYEHFKTVAQE------VDIPIIIYNIPSRTCVE-----ISVDTMFKLASECE 155 (294)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHH------CCSCEEEEECHHHHSCC-----CCHHHHHHHHHHCT
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHh------cCCCEEEEeCCcccCcC-----CCHHHHHHHHhhCC
Confidence 4899999988776666777777788777533 368877543 2333 45666666664444
No 286
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=28.06 E-value=91 Score=21.70 Aligned_cols=58 Identities=16% Similarity=0.333 Sum_probs=37.6
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEE----eCCCCCCCCCCHHHHHHHHHHcC
Q psy10891 17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLA----NKCDLPHRQVDINDIECFYKEHN 85 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~----nK~D~~~~~~~~~~~~~~~~~~~ 85 (142)
.++|+++++--.-...+-+.+..++..+-.. .+.|+++-- +..+ ++.+.+..+++.+.
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a------~~lPiilYn~P~~tg~~-----l~~~~~~~La~~~p 155 (292)
T 2vc6_A 94 AGADGVLIVSPYYNKPTQEGIYQHFKAIDAA------STIPIIVYNIPGRSAIE-----IHVETLARIFEDCP 155 (292)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHH------CSSCEEEEECHHHHSCC-----CCHHHHHHHHHHCT
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh------CCCCEEEEeCccccCcC-----CCHHHHHHHHhhCC
Confidence 4899999988776666777777788777533 268877533 2333 34566666665343
No 287
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F
Probab=27.85 E-value=33 Score=23.78 Aligned_cols=75 Identities=11% Similarity=0.144 Sum_probs=40.7
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccC
Q psy10891 17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKE 96 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 96 (142)
..+.+||+.-|++...-.. ++..+... .++|.++|.+|.+|.. ++-..... +-+.+
T Consensus 139 gKAqLVVIA~DvdPielv~----~LPaLCee------~~VPY~~V~sK~~LG~----------avGrKt~s----~Vait 194 (255)
T 4a17_F 139 KQAKLVVIAHDVDPIELVI----FLPQLCRK------NDVPFAFVKGKAALGK----------LVNKKTAT----AVALT 194 (255)
T ss_dssp SCCSEEEEESCCSSTHHHH----HHHHHHHH------TTCCEEEESCHHHHHH----------HHTSSCCS----EEEEC
T ss_pred CCceEEEEeCCCChHHHHH----HHHHHHHH------cCCCEEEECCHHHHHH----------HhCCCcce----EEEee
Confidence 4788888888876542222 33333221 3899998887766521 11111111 22334
Q ss_pred CCCHH--HHHHHHHHHHHHHh
Q psy10891 97 GLMVN--DSMKFLLDVLMRQE 115 (142)
Q Consensus 97 ~~~i~--~l~~~l~~~~~~~~ 115 (142)
..|-+ ..+..+++.+..+.
T Consensus 195 dv~~EDk~al~kLve~iktny 215 (255)
T 4a17_F 195 EVRNEDKAKLQQFSELFKTNY 215 (255)
T ss_dssp CCCHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHHHhhc
Confidence 44443 56777777776654
No 288
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=27.84 E-value=61 Score=20.25 Aligned_cols=73 Identities=11% Similarity=-0.064 Sum_probs=37.3
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccC-------CCCCCCEEEEEeCCCCC--CCCCCHHHHHHHHHHcC
Q psy10891 15 YYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLS-------DGSPIPCMLLANKCDLP--HRQVDINDIECFYKEHN 85 (142)
Q Consensus 15 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~-------~~~~~p~ilv~nK~D~~--~~~~~~~~~~~~~~~~~ 85 (142)
-+..+|++||++-+-...--..++.|+..+....... ...+.+++++.+--.-. ........+..++...|
T Consensus 68 ~l~~aD~ii~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~l~~~l~~~G 147 (184)
T 1rli_A 68 RILQCHILIFATPIYWFGMSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGGDNPKIKGLPLIQQFEHIFHFMG 147 (184)
T ss_dssp HHHTCSEEEEEEECBTTBCCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEESSCHHHHTHHHHHHHHHHHHHHT
T ss_pred HHHhCCEEEEEeCccccCCcHHHHHHHHHhHHhccCccccccccccCCCeEEEEEeCCCCCccchHHHHHHHHHHHHHcC
Confidence 4568999999988765432233455655543110000 01367777777732210 00112344555667777
Q ss_pred Cc
Q psy10891 86 FI 87 (142)
Q Consensus 86 ~~ 87 (142)
+.
T Consensus 148 ~~ 149 (184)
T 1rli_A 148 MS 149 (184)
T ss_dssp CE
T ss_pred Cc
Confidence 53
No 289
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=27.65 E-value=94 Score=21.97 Aligned_cols=54 Identities=17% Similarity=0.326 Sum_probs=35.8
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEE----eCCCCCCCCCCHHHHHHHH
Q psy10891 17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLA----NKCDLPHRQVDINDIECFY 81 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~----nK~D~~~~~~~~~~~~~~~ 81 (142)
.++|+++++--.-...+-+.+..++..+-.. .+.|+++-- +..+ ++.+.+..++
T Consensus 117 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a------~~lPiilYn~P~~tg~~-----l~~~~~~~La 174 (314)
T 3qze_A 117 GGADACLLVTPYYNKPTQEGMYQHFRHIAEA------VAIPQILYNVPGRTSCD-----MLPETVERLS 174 (314)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHH------SCSCEEEEECHHHHSCC-----CCHHHHHHHH
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh------cCCCEEEEeCccccCCC-----CCHHHHHHHh
Confidence 4899999987766666767777888887543 278887653 2333 3455555555
No 290
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=27.49 E-value=93 Score=21.76 Aligned_cols=56 Identities=16% Similarity=0.348 Sum_probs=38.1
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEE----eCCCCCCCCCCHHHHHHHHHH
Q psy10891 17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLA----NKCDLPHRQVDINDIECFYKE 83 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~----nK~D~~~~~~~~~~~~~~~~~ 83 (142)
.++|+++++--.-...+-+.+..++..+-.. .+.|+++-- +.. .++.+.+..+++.
T Consensus 102 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a------~~lPiilYn~P~~tg~-----~l~~~~~~~La~~ 161 (301)
T 3m5v_A 102 HGADGILSVAPYYNKPTQQGLYEHYKAIAQS------VDIPVLLYNVPGRTGC-----EISTDTIIKLFRD 161 (301)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHH------CSSCEEEEECHHHHSC-----CCCHHHHHHHHHH
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh------CCCCEEEEeCchhhCc-----CCCHHHHHHHHhc
Confidence 4899999987766666767777788777533 278887643 233 3456777777765
No 291
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.32 E-value=91 Score=17.74 Aligned_cols=42 Identities=17% Similarity=0.144 Sum_probs=23.5
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEE-EeCCCCCC
Q psy10891 17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL-ANKCDLPH 69 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv-~nK~D~~~ 69 (142)
..+.++|+.-|. .+.....+..+... .++|++.+ .+|.+|..
T Consensus 30 gka~lViiA~D~-~~~~~~~i~~~c~~----------~~ip~~~~~~s~~eLG~ 72 (99)
T 3j21_Z 30 GGAKLIIVAKNA-PKEIKDDIYYYAKL----------SDIPVYEFEGTSVELGT 72 (99)
T ss_dssp TCCSEEEEECCC-CHHHHHHHHHHHHH----------TTCCEEEECCCSCGGGG
T ss_pred CCccEEEEeCCC-CHHHHHHHHHHHHH----------cCCCEEEeCCCHHHHHH
Confidence 356777777663 33333333332221 47997655 88888753
No 292
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=27.25 E-value=91 Score=21.85 Aligned_cols=39 Identities=18% Similarity=0.297 Sum_probs=28.4
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEE
Q psy10891 17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv 61 (142)
.++|+++++--.-...+-+.+..++..+-.. .+.|+++-
T Consensus 106 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a------~~lPiilY 144 (301)
T 1xky_A 106 VGVDAVMLVAPYYNKPSQEGMYQHFKAIAES------TPLPVMLY 144 (301)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHT------CSSCEEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh------cCCCEEEE
Confidence 4899999988777666777777788777532 36887754
No 293
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=27.22 E-value=1e+02 Score=21.51 Aligned_cols=39 Identities=26% Similarity=0.140 Sum_probs=28.2
Q ss_pred ccCCEEEEEEeCCCh-hhHHHHHHHHHHHHHhcccCCCCCCCEEEE
Q psy10891 17 KDAHGCIIMFDLTNQ-NSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv 61 (142)
.++|+++++--.-.. .+-+.+..++..+-.. .+.|+++-
T Consensus 90 ~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a------~~lPiilY 129 (293)
T 1w3i_A 90 FDIVGIASYAPYYYPRMSEKHLVKYFKTLCEV------SPHPVYLY 129 (293)
T ss_dssp SCCSEEEEECCCSCSSCCHHHHHHHHHHHHHH------CSSCEEEE
T ss_pred cCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhh------CCCCEEEE
Confidence 489999998777666 6777777788777533 26787754
No 294
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=27.11 E-value=92 Score=21.68 Aligned_cols=55 Identities=11% Similarity=0.221 Sum_probs=37.0
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEE----eCCCCCCCCCCHHHHHHHHH
Q psy10891 17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLA----NKCDLPHRQVDINDIECFYK 82 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~----nK~D~~~~~~~~~~~~~~~~ 82 (142)
.++|+++++--.-...+-+.+..++..+-... +.|+++-- +..+ ++.+.+..+++
T Consensus 96 ~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~------~lPiilYn~P~~tg~~-----l~~~~~~~La~ 154 (292)
T 3daq_A 96 LGADAIMLITPYYNKTNQRGLVKHFEAIADAV------KLPVVLYNVPSRTNMT-----IEPETVEILSQ 154 (292)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHHH------CSCEEEEECHHHHSCC-----CCHHHHHHHHT
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC------CCCEEEEecccccCCC-----CCHHHHHHHhc
Confidence 48999999876666667677777888775433 78987642 2333 45666666665
No 295
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=27.08 E-value=99 Score=21.49 Aligned_cols=54 Identities=11% Similarity=0.145 Sum_probs=35.0
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEE----eCCCCCCCCCCHHHHHHHH
Q psy10891 17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLA----NKCDLPHRQVDINDIECFY 81 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~----nK~D~~~~~~~~~~~~~~~ 81 (142)
.++|+++++--.-...+-+.+..++..+-.. .+.|+++-- +..+ ++.+.+..++
T Consensus 95 ~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a------~~lPiilYn~P~~tg~~-----l~~~~~~~La 152 (291)
T 3tak_A 95 LGADAALLVTPYYNKPTQEGLYQHYKAIAEA------VELPLILYNVPGRTGVD-----LSNDTAVRLA 152 (291)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHH------CCSCEEEEECHHHHSCC-----CCHHHHHHHT
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh------cCCCEEEEecccccCCC-----CCHHHHHHHH
Confidence 4899999887666666667777788777533 278887643 2333 3455555555
No 296
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=26.87 E-value=18 Score=22.33 Aligned_cols=76 Identities=11% Similarity=0.079 Sum_probs=40.6
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHH-HcCCceEEEeeccC
Q psy10891 18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYK-EHNFIGWTETSTKE 96 (142)
Q Consensus 18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~ 96 (142)
.+.++|+.-|++.......+..+.... ++|++.+.+|.+|.. ++- ..+.. .+-+.-..
T Consensus 48 kakLViiA~D~~p~~~~~~l~~lc~~~----------~VP~~~v~sk~eLG~----------a~G~~~~~s-~vaI~d~~ 106 (134)
T 2ale_A 48 ISEFIIMAADCEPIEILLHLPLLCEDK----------NVPYVFVPSRVALGR----------ACGVSRPVI-AASITTND 106 (134)
T ss_dssp CEEEEEEETTCSSGGGGTHHHHHHHHH----------TCCEEEESCHHHHHH----------HTTCSSCCS-EEEEECCT
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHHHhc----------CCCEEEECCHHHHHH----------HhCCCCCeE-EEEEEcCC
Confidence 455555655655433444444443332 799988887765432 111 11211 33333344
Q ss_pred CCCHHHHHHHHHHHHHHH
Q psy10891 97 GLMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 97 ~~~i~~l~~~l~~~~~~~ 114 (142)
+..+..+++.+...+...
T Consensus 107 ~s~~~~l~~~i~~~~~~~ 124 (134)
T 2ale_A 107 ASAIKTQIYAVKDKIETL 124 (134)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 557888888877766543
No 297
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=26.76 E-value=1e+02 Score=21.66 Aligned_cols=40 Identities=15% Similarity=0.205 Sum_probs=28.5
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEE
Q psy10891 17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLA 62 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~ 62 (142)
.++|+++++--.-...+-+.+..++..+-.. .+.|+++--
T Consensus 110 ~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a------~~lPiilYn 149 (304)
T 3cpr_A 110 AGADGLLVVTPYYSKPSQEGLLAHFGAIAAA------TEVPICLYD 149 (304)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHH------CCSCEEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHh------cCCCEEEEe
Confidence 4899999987776666767777787777533 268877543
No 298
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=26.34 E-value=1e+02 Score=21.48 Aligned_cols=39 Identities=15% Similarity=0.183 Sum_probs=28.2
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEE
Q psy10891 17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv 61 (142)
.++|+++++--.-...+-+.+..++..+-.. .+.|+++-
T Consensus 101 ~Gadavlv~~P~y~~~~~~~l~~~f~~va~a------~~lPiilY 139 (297)
T 3flu_A 101 AGADYTLSVVPYYNKPSQEGIYQHFKTIAEA------TSIPMIIY 139 (297)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHH------CCSCEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHh------CCCCEEEE
Confidence 4899999987666666667777788777533 27888765
No 299
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=26.14 E-value=20 Score=21.59 Aligned_cols=41 Identities=17% Similarity=0.239 Sum_probs=22.8
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCC
Q psy10891 17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDL 67 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 67 (142)
..+.++|+.-|++.......+..+... .++|++.+.+|.+|
T Consensus 35 gkakLViiA~D~~~~~~~~~l~~lc~~----------~~VP~~~v~sk~eL 75 (121)
T 2lbw_A 35 GEKGLVVIAGDIWPADVISHIPVLCED----------HSVPYIFIPSKQDL 75 (121)
T ss_dssp SCCCEEEECTTCSCTTHHHHHHHHHHH----------TCCCEEECCCHHHH
T ss_pred CCceEEEEeCCCCHHHHHHHHHHHHHh----------cCCcEEEECCHHHH
Confidence 356667666666543223333333222 37999887776554
No 300
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=25.91 E-value=99 Score=21.52 Aligned_cols=54 Identities=7% Similarity=0.070 Sum_probs=35.4
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEE----eCCCCCCCCCCHHHHHHHH
Q psy10891 17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLA----NKCDLPHRQVDINDIECFY 81 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~----nK~D~~~~~~~~~~~~~~~ 81 (142)
.++|+++++--.-...+-+.+..++..+-... +.|+++-- +..+ ++.+.+..++
T Consensus 98 ~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~------~lPiilYn~P~~tg~~-----l~~~~~~~La 155 (293)
T 1f6k_A 98 LGYDCLSAVTPFYYKFSFPEIKHYYDTIIAET------GSNMIVYSIPFLTGVN-----MGIEQFGELY 155 (293)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHHH------CCCEEEEECHHHHCCC-----CCHHHHHHHH
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC------CCCEEEEECccccCcC-----CCHHHHHHHh
Confidence 48999999887766667677777877775433 57877543 2333 3455555555
No 301
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=25.60 E-value=1.1e+02 Score=19.62 Aligned_cols=51 Identities=8% Similarity=-0.090 Sum_probs=31.5
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcc---c------CCCCCCCEEEEEeCC
Q psy10891 15 YYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCT---L------SDGSPIPCMLLANKC 65 (142)
Q Consensus 15 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~---~------~~~~~~p~ilv~nK~ 65 (142)
-+..||++||++-+-...---.++.|+..+..... . ....+++++++.+--
T Consensus 70 ~l~~AD~iV~~~P~y~~~~pa~LK~~iD~v~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g 129 (196)
T 3lcm_A 70 LVTWADHLIFIFPIWWSGMPAILKGFIDRVFVADFAYSYKKVGLEGHLQGKSAWIITTHN 129 (196)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTEEECSSSEEESCTTCEEEEEEECS
T ss_pred HHHhCCEEEEECchhhccccHHHHHHHHHHccCCcceecCCCCcccCCCCCEEEEEEcCC
Confidence 45689999999987654333446678887742100 0 012467777777754
No 302
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=25.12 E-value=96 Score=21.56 Aligned_cols=39 Identities=18% Similarity=0.330 Sum_probs=27.7
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEE
Q psy10891 17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv 61 (142)
.++|+++++--.-...+-+.+..++..+- ...+.|+++-
T Consensus 95 ~Gadavlv~~P~y~~~s~~~l~~~f~~ia------~a~~lPiilY 133 (292)
T 2ojp_A 95 SGIVGCLTVTPYYNRPSQEGLYQHFKAIA------EHTDLPQILY 133 (292)
T ss_dssp SSCSEEEEECCCSSCCCHHHHHHHHHHHH------TTCSSCEEEE
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHH------HhcCCCEEEE
Confidence 48899998877766667777777877774 2236787753
No 303
>3tnt_A SARS coronavirus main protease; 3C-like protease, hydrolase-hydrolase inhibitor CO; HET: G85; 1.59A {Sars coronavirus} PDB: 1uk2_A 1uk3_A 1uk4_A 1z1i_A 2a5a_A 1uj1_A* 2bx3_A 2bx4_A 2c3s_A 2a5i_A 2gt7_A* 2gx4_A* 2gz7_A* 2gz8_A* 2gz9_A 2duc_A 2hob_A* 2v6n_A* 2z3c_A* 2z3d_A* ...
Probab=25.06 E-value=51 Score=23.28 Aligned_cols=45 Identities=22% Similarity=0.254 Sum_probs=36.6
Q ss_pred CCCCCHHHHHHHHHHcCCceEEE--------eeccCCCCHHHHHHHHHHHHHH
Q psy10891 69 HRQVDINDIECFYKEHNFIGWTE--------TSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~--------~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
...+..++.+.|+...++.++-. .+|++|..+.+++..|.+.+.+
T Consensus 222 ~~~~sv~dfN~WA~~ngft~~~~~~~~~~~~Laa~TGVsVe~lL~aI~~ll~~ 274 (306)
T 3tnt_A 222 RFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQN 274 (306)
T ss_dssp SCCCCHHHHHHHHHHTTBCCCCHHHHHHTHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ccEecHHHHHHHHHhcCCccccccHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 35688999999999999754321 5789999999999999987765
No 304
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=25.05 E-value=1.2e+02 Score=21.36 Aligned_cols=62 Identities=8% Similarity=0.043 Sum_probs=38.5
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcC
Q psy10891 17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHN 85 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~ 85 (142)
.++|+++++--.-...+-+.+..++..+- ...+.|+++--+ --.....++.+.+..+++++.
T Consensus 106 ~Gadavlv~~P~y~~~s~~~l~~~f~~va------~a~~lPiilYn~-P~~tg~~l~~~~~~~La~~~p 167 (306)
T 1o5k_A 106 LGANGVLVVTPYYNKPTQEGLYQHYKYIS------ERTDLGIVVYNV-PGRTGVNVLPETAARIAADLK 167 (306)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHH------TTCSSCEEEEEC-HHHHSCCCCHHHHHHHHHHCT
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHH------HhCCCCEEEEeC-ccccCcCCCHHHHHHHHHhCC
Confidence 48999999887766667777778888775 223688775431 100012345667777764444
No 305
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=25.04 E-value=1e+02 Score=21.59 Aligned_cols=55 Identities=7% Similarity=0.113 Sum_probs=35.6
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEE----eCCCCCCCCCCHHHHHHHH
Q psy10891 17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLA----NKCDLPHRQVDINDIECFY 81 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~----nK~D~~~~~~~~~~~~~~~ 81 (142)
.++|+++++--.-...+-+.+..++..+-... ++.|+++-- +..+ ++.+.+..++
T Consensus 105 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~-----~~lPiilYn~P~~tg~~-----l~~~~~~~La 163 (303)
T 2wkj_A 105 YGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSA-----DGLPMVVYNIPALSGVK-----LTLDQINTLV 163 (303)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHHH-----TTCCEEEEECHHHHCCC-----CCHHHHHHHH
T ss_pred CCCCEEEecCCCCCCCCHHHHHHHHHHHHHhC-----CCCCEEEEeCccccCCC-----CCHHHHHHHh
Confidence 48999999887766667777777887775433 238877543 2333 3455555555
No 306
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=24.79 E-value=92 Score=21.87 Aligned_cols=54 Identities=15% Similarity=0.295 Sum_probs=36.4
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEE----eCCCCCCCCCCHHHHHHHH
Q psy10891 17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLA----NKCDLPHRQVDINDIECFY 81 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~----nK~D~~~~~~~~~~~~~~~ 81 (142)
.++|+++++--.-...+-+.+..++..+. ...+.|+++-- +..+ +..+.+..++
T Consensus 109 ~Gadavlv~~P~y~~~s~~~l~~~f~~va------~a~~lPiilYn~P~~tg~~-----l~~~~~~~La 166 (304)
T 3l21_A 109 EGAHGLLVVTPYYSKPPQRGLQAHFTAVA------DATELPMLLYDIPGRSAVP-----IEPDTIRALA 166 (304)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHH------TSCSSCEEEEECHHHHSSC-----CCHHHHHHHH
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHH------HhcCCCEEEEeCccccCCC-----CCHHHHHHHh
Confidence 48999999876666667777777887775 22378887653 2444 4556666666
No 307
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=24.68 E-value=1e+02 Score=22.11 Aligned_cols=62 Identities=16% Similarity=0.192 Sum_probs=38.5
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcC
Q psy10891 17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHN 85 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~ 85 (142)
.++|+++++--.-...+-+.+..++..+-.. .+.|+++- |--......++.+.+..+++++.
T Consensus 125 ~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a------~~lPiilY-n~P~~tg~~l~~e~~~~La~~~p 186 (343)
T 2v9d_A 125 AGADGIVVINPYYWKVSEANLIRYFEQVADS------VTLPVMLY-NFPALTGQDLTPALVKTLADSRS 186 (343)
T ss_dssp HTCSEEEEECCSSSCCCHHHHHHHHHHHHHT------CSSCEEEE-ECHHHHSSCCCHHHHHHHHHHCT
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHh------cCCCEEEE-eCchhcCcCCCHHHHHHHHHhCC
Confidence 4899999988776666777777788777532 36887753 31110012345677777764444
No 308
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=24.62 E-value=1.4e+02 Score=19.27 Aligned_cols=32 Identities=16% Similarity=-0.142 Sum_probs=21.4
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHH
Q psy10891 15 YYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDL 46 (142)
Q Consensus 15 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~ 46 (142)
-+..||++||++-+-...---.++.|+..+..
T Consensus 67 ~l~~AD~iV~~~P~y~~s~pa~LK~~iDrv~~ 98 (204)
T 2amj_A 67 NFLWADVVIWQMPGWWMGAPWTVKKYIDDVFT 98 (204)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHHH
T ss_pred HHHhCCEEEEECCccccCCCHHHHHHHHHHhh
Confidence 45679999999987654322345677776643
No 309
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=24.57 E-value=89 Score=22.06 Aligned_cols=54 Identities=7% Similarity=0.028 Sum_probs=35.9
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHH
Q psy10891 17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFY 81 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~ 81 (142)
.++|+++++--.-...+-+.+..++..+-... +.|+++ -| .... ++.+.+..++
T Consensus 105 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~------~lPiil-Yn---~tg~-l~~~~~~~La 158 (314)
T 3d0c_A 105 SGADCVMIHQPVHPYITDAGAVEYYRNIIEAL------DAPSII-YF---KDAH-LSDDVIKELA 158 (314)
T ss_dssp TTCSEEEECCCCCSCCCHHHHHHHHHHHHHHS------SSCEEE-EE---CCTT-SCTHHHHHHT
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC------CCCEEE-Ee---CCCC-cCHHHHHHHH
Confidence 48999999877666667677777887775432 578665 44 2224 6666666665
No 310
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=24.42 E-value=89 Score=22.11 Aligned_cols=62 Identities=13% Similarity=0.079 Sum_probs=38.6
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcC
Q psy10891 17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHN 85 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~ 85 (142)
.++|+++++--.-...+-+.+..++..+-... +.|+++--+ --.....+..+.+..++.++.
T Consensus 118 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~------~lPiilYn~-P~~tg~~l~~~~~~~L~a~~p 179 (315)
T 3na8_A 118 LGAEAVMVLPISYWKLNEAEVFQHYRAVGEAI------GVPVMLYNN-PGTSGIDMSVELILRIVREVD 179 (315)
T ss_dssp TTCSEEEECCCCSSCCCHHHHHHHHHHHHHHC------SSCEEEEEC-HHHHSCCCCHHHHHHHHHHST
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhC------CCcEEEEeC-cchhCcCCCHHHHHHHHhcCC
Confidence 48999999877666667777778888876433 688775431 100012345667777744554
No 311
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=24.39 E-value=69 Score=20.30 Aligned_cols=73 Identities=8% Similarity=-0.043 Sum_probs=36.9
Q ss_pred hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHHHHHHcCC
Q psy10891 14 VYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIECFYKEHNF 86 (142)
Q Consensus 14 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~~~~~~~~ 86 (142)
.-+.++|++||..-.-...--..+..|+..+..........+.++.++++---... .......+..++...++
T Consensus 67 ~~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~ 140 (200)
T 2a5l_A 67 EDLKNCAGLALGSPTRFGNMASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGM 140 (200)
T ss_dssp HHHHTCSEEEEEEECBTTBCCHHHHHHHHTCHHHHHHTTTTTCEEEEEEEBSCSSCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCEEEEEcChhccCccHHHHHHHHHHHHHhhccccCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHCCC
Confidence 34568999999987755322233445554442110001124678777777542211 11123345555666664
No 312
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=24.37 E-value=88 Score=22.33 Aligned_cols=55 Identities=5% Similarity=-0.036 Sum_probs=35.2
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEE----eCCCCCCCCCCHHHHHHHHH
Q psy10891 17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLA----NKCDLPHRQVDINDIECFYK 82 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~----nK~D~~~~~~~~~~~~~~~~ 82 (142)
.++|+++++--.-...+-+.+..++..+-.. .++|+++-- +..+ +..+.+..+++
T Consensus 128 ~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a------~~lPiilYn~P~~tg~~-----l~~e~~~~La~ 186 (332)
T 2r8w_A 128 AGADALLLAPVSYTPLTQEEAYHHFAAVAGA------TALPLAIYNNPTTTRFT-----FSDELLVRLAY 186 (332)
T ss_dssp HTCSEEEECCCCSSCCCHHHHHHHHHHHHHH------CSSCEEEECCHHHHCCC-----CCHHHHHHHHT
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHh------cCCCEEEEeCccccCcC-----CCHHHHHHHHc
Confidence 4899999887766666777777788777533 268877532 2333 34555555553
No 313
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=24.33 E-value=74 Score=20.19 Aligned_cols=72 Identities=8% Similarity=-0.011 Sum_probs=38.3
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCC-CCCCHHHHHHHHHHcCC
Q psy10891 15 YYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDINDIECFYKEHNF 86 (142)
Q Consensus 15 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~-~~~~~~~~~~~~~~~~~ 86 (142)
-+..+|++||..-.-...-...+..|+..+..........+.++.++++--.... .......+..++...++
T Consensus 67 ~l~~aD~ii~gsP~y~~~~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~g~~~~~~~l~~~l~~~g~ 139 (199)
T 2zki_A 67 DMRWADGFAIGSPTRYGNMAGGLKTFLDTTAILWKDNVLYGKPVTFFTEASTVHGGHETTILTMSTYAYHFGM 139 (199)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHTTHHHHHTTSSTTCEEEEEEEBSSTTSSSSHHHHHHTHHHHHHTC
T ss_pred HHHhCCEEEEECCccccCccHHHHHHHHHhhhcccccccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHHCCe
Confidence 4568999999987755322233455655542110011225678777776433211 11234556666777774
No 314
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=24.24 E-value=87 Score=22.13 Aligned_cols=54 Identities=7% Similarity=0.086 Sum_probs=35.3
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHH
Q psy10891 17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFY 81 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~ 81 (142)
.++|+++++--.....+-+.+..++..+-... +.|+++--+..+ ++.+.+..++
T Consensus 105 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~------~lPiilYn~g~~-----l~~~~~~~La 158 (316)
T 3e96_A 105 AGADAVMIHMPIHPYVTAGGVYAYFRDIIEAL------DFPSLVYFKDPE-----ISDRVLVDLA 158 (316)
T ss_dssp HTCSEEEECCCCCSCCCHHHHHHHHHHHHHHH------TSCEEEEECCTT-----SCTHHHHHHT
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhC------CCCEEEEeCCCC-----CCHHHHHHHH
Confidence 48999998866655567777778888876443 588876543333 3445555555
No 315
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=24.19 E-value=92 Score=21.76 Aligned_cols=39 Identities=18% Similarity=0.137 Sum_probs=27.6
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEE
Q psy10891 17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv 61 (142)
.++|+++++--.-...+-+.+..++..+-.. .+.|+++-
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a------~~lPiilY 132 (297)
T 2rfg_A 94 AGADAVLCVAGYYNRPSQEGLYQHFKMVHDA------IDIPIIVY 132 (297)
T ss_dssp HTCSEEEECCCTTTCCCHHHHHHHHHHHHHH------CSSCEEEE
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh------cCCCEEEE
Confidence 4899999887766666777777777777533 26787753
No 316
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=23.74 E-value=1.1e+02 Score=21.05 Aligned_cols=50 Identities=14% Similarity=-0.036 Sum_probs=31.2
Q ss_pred hccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcc---------cCCCCCCCEEEEEeCC
Q psy10891 16 YKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCT---------LSDGSPIPCMLLANKC 65 (142)
Q Consensus 16 ~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~---------~~~~~~~p~ilv~nK~ 65 (142)
+..||++||.+-+-...---.++.|+..+..... .....+.+++++.+--
T Consensus 91 l~~AD~IV~~~P~y~~s~Pa~LK~~iDrv~~~g~~f~~~~~~~~g~l~gK~~~~i~t~G 149 (273)
T 1d4a_A 91 LEAADLVIFQFPLQWFGVPAILKGWFERVFIGEFAYTYAAMYDKGPFRSKKAVLSITTG 149 (273)
T ss_dssp HHHCSEEEEEEECBTTBCCHHHHHHHHHHSCBTTTBCTTSCGGGSTTTTCEEEEEEECS
T ss_pred HHhCCEEEEECchhhccCCHHHHHHHHHHHhcCcccccCCCCCccccCCCEEEEEEeCC
Confidence 6789999999988654322345678887742110 0122467777777644
No 317
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H 3o58_H 3o5h_H 3u5e_G 3u5i_G 4b6a_G
Probab=23.64 E-value=37 Score=23.56 Aligned_cols=41 Identities=20% Similarity=0.171 Sum_probs=26.0
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCC
Q psy10891 17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDL 67 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 67 (142)
..+.+||+.-|++...-...+..+.... ++|++.+.+|.+|
T Consensus 146 gKAkLVVIA~DadP~eivk~LpaLC~k~----------gVPy~~V~sK~eL 186 (256)
T 3izc_H 146 KKAKLVLIANDVDPIELVVFLPALCKKM----------GVPYAIVKGKARL 186 (256)
T ss_dssp TCCSEEEEESCCSSGGGTTHHHHHHHHH----------TCCEEEESCHHHH
T ss_pred CcceEEEEeCCCChHHHHHHHHHHHHhc----------CCCEEEECCHHHH
Confidence 4678888888876543222223333333 7999988888765
No 318
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=23.63 E-value=99 Score=21.42 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=27.8
Q ss_pred ccCCEEEEEEeCCCh-hhHHHHHHHHHHHHHhcccCCCCCCCEEEE
Q psy10891 17 KDAHGCIIMFDLTNQ-NSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv 61 (142)
.++|+++++--.-.. .+-+.+..++..+-.. .+.|+++-
T Consensus 89 ~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a------~~lPiilY 128 (286)
T 2r91_A 89 RGAEAVASLPPYYFPRLSERQIAKYFRDLCSA------VSIPVFLY 128 (286)
T ss_dssp TTCSEEEECCSCSSTTCCHHHHHHHHHHHHHH------CSSCEEEE
T ss_pred cCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHh------cCCCEEEE
Confidence 489999988776666 6777777788777533 26787754
No 319
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=23.50 E-value=99 Score=21.47 Aligned_cols=39 Identities=13% Similarity=-0.047 Sum_probs=27.5
Q ss_pred ccCCEEEEEEeCCCh-hhHHHHHHHHHHHHHhcccCCCCCCCEEEE
Q psy10891 17 KDAHGCIIMFDLTNQ-NSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv 61 (142)
.++|+++++--.-.. .+-+.+..++..+-.. .+.|+++-
T Consensus 90 ~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a------~~lPiilY 129 (288)
T 2nuw_A 90 MDILGVSSHSPYYFPRLPEKFLAKYYEEIARI------SSHSLYIY 129 (288)
T ss_dssp SCCSEEEECCCCSSCSCCHHHHHHHHHHHHHH------CCSCEEEE
T ss_pred cCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHh------cCCCEEEE
Confidence 488999988776665 6767777777777533 26787754
No 320
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=22.91 E-value=79 Score=24.50 Aligned_cols=56 Identities=11% Similarity=0.003 Sum_probs=34.7
Q ss_pred CCCCCEEEEEeCCCCCCCCCCHHHH---HHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHHHH
Q psy10891 53 GSPIPCMLLANKCDLPHRQVDINDI---ECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113 (142)
Q Consensus 53 ~~~~p~ilv~nK~D~~~~~~~~~~~---~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 113 (142)
.-++|+++.+|+... .+.+++ ..+|.+.| ..+..+=++=|.|-.+|-..++..+-+
T Consensus 372 ~fGvpvVVaiN~F~t----DT~aEi~~v~~~~~~~G-~~~~~~wa~GG~G~~~LA~~Vv~~~~~ 430 (557)
T 3pzx_A 372 KFGVPAVVAINAFPT----DTEAELNLLYELCAKAG-AEVALSWAKGGEGGLELARKVLQTLES 430 (557)
T ss_dssp TTTCCEEEEEECCTT----CCHHHHHHHHHHCCSSE-EEEECHHHHGGGGGHHHHHHHHHHHHH
T ss_pred HcCCCeEEEEeCCCC----CCHHHHHHHHHHHHHcC-CCEEEEecccchhHHHHHHHHHHHHhc
Confidence 368999999999864 234444 44455555 323333455566777777777776643
No 321
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=21.97 E-value=64 Score=19.12 Aligned_cols=14 Identities=29% Similarity=0.418 Sum_probs=10.1
Q ss_pred CCCCEEEE-EeCCCC
Q psy10891 54 SPIPCMLL-ANKCDL 67 (142)
Q Consensus 54 ~~~p~ilv-~nK~D~ 67 (142)
.++|++.+ +++.+|
T Consensus 67 ~~ipv~~~~~s~~eL 81 (112)
T 3iz5_f 67 AKISVHHFHGNNVDL 81 (112)
T ss_dssp TTCCEECCCCTTCTH
T ss_pred cCCcEEEeCCCHHHH
Confidence 37888877 777765
No 322
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=21.97 E-value=92 Score=19.66 Aligned_cols=73 Identities=8% Similarity=-0.037 Sum_probs=41.3
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcc---------cCCCCCCCEEEEEeCCCCCC---CCCCHHHHHHHHH
Q psy10891 15 YYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCT---------LSDGSPIPCMLLANKCDLPH---RQVDINDIECFYK 82 (142)
Q Consensus 15 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~---------~~~~~~~p~ilv~nK~D~~~---~~~~~~~~~~~~~ 82 (142)
-+..+|++||++-+-...--..++.|+..+..... .....+.+++++.+--.... .......+..++.
T Consensus 83 ~l~~aD~iv~~~P~y~~~~p~~lK~~iD~~~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~l~~~l~ 162 (201)
T 1t5b_A 83 ELKAHDVIVIAAPMYNFNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRGGIHKDTPTDLIAPYLKVFLG 162 (201)
T ss_dssp HHHHCSEEEEECCCBTTBCCHHHHHHHHHHCCBTTTEEEETTEEEESSCSCEEEEEEECSSCCTTSTTCCHHHHHHHHHH
T ss_pred HHHhCCEEEEEeCcccCcCCHHHHHHHHHheeCCCceecCCCCCccCCCCCeEEEEEecCCCCCCCchhhHHHHHHHHHh
Confidence 45689999999877654322345678777741100 00125678877776433211 1123445667777
Q ss_pred HcCCc
Q psy10891 83 EHNFI 87 (142)
Q Consensus 83 ~~~~~ 87 (142)
..|+.
T Consensus 163 ~~G~~ 167 (201)
T 1t5b_A 163 FIGIT 167 (201)
T ss_dssp HTTCC
T ss_pred hcCcc
Confidence 77754
No 323
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=21.52 E-value=42 Score=20.14 Aligned_cols=41 Identities=24% Similarity=0.193 Sum_probs=23.1
Q ss_pred ccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCC
Q psy10891 17 KDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDL 67 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~ 67 (142)
..+.++|+.-|++...-...+..+... .++|++.+.+|.+|
T Consensus 44 gka~lViiA~D~~p~~~~~~l~~lc~~----------~~VP~~~v~sk~eL 84 (120)
T 1xbi_A 44 GIAKLVIIAEDVKPEEVVAHLPYLCEE----------KGIPYAYVASKQDL 84 (120)
T ss_dssp TCCSEEEEESCCSSGGGTTTHHHHHHH----------HTCCEEEESCHHHH
T ss_pred CCceEEEEcCCCChHHHHHHHHHHHHh----------cCCCEEEeCCHHHH
Confidence 357777777776543223333333333 27888877766544
No 324
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=21.44 E-value=28 Score=21.91 Aligned_cols=69 Identities=9% Similarity=-0.090 Sum_probs=38.0
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCc
Q psy10891 15 YYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFI 87 (142)
Q Consensus 15 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~ 87 (142)
-+..+|++|++.-.-...-...++.|+..+.. ..-.+.|+.++++----.........++.++...++.
T Consensus 60 ~i~~aD~ii~~tP~y~~~~p~~lk~~lD~l~~----~~~~gK~~~~~~~sgg~~g~~~a~~~l~~~l~~~g~~ 128 (174)
T 3gfs_A 60 RVTKADAIVLLSPEYHSGMSGALKNALDFLSS----EQFKYKPVALLAVAGGGDGGINALNNMRTVMRGVYAN 128 (174)
T ss_dssp HHHHCSSEEEEEECSSSSCCHHHHHHHHTCCH----HHHTTCEEEEEEECCSTTCSHHHHHHHHHHHHHTTCE
T ss_pred HHHHCCEEEEEcCCcCCCCCHHHHHHHHHhCH----hhhCCCcEEEEEECCCChhHHHHHHHHHHHHHHcCCE
Confidence 45689999999877654322334444433310 0114788888876432211112245566777777753
No 325
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=21.12 E-value=1.3e+02 Score=19.17 Aligned_cols=73 Identities=10% Similarity=0.063 Sum_probs=40.7
Q ss_pred hhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcc-c--------CCCCCCCEEEEEeCCCCCCC-CCCHHHHHHHHHHc
Q psy10891 15 YYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCT-L--------SDGSPIPCMLLANKCDLPHR-QVDINDIECFYKEH 84 (142)
Q Consensus 15 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~--------~~~~~~p~ilv~nK~D~~~~-~~~~~~~~~~~~~~ 84 (142)
-+..||++||++-+-...---.++.|+..+..... . ....+.+++++.+--..... ......+..++...
T Consensus 91 ~l~~aD~iv~~~P~y~~~~pa~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~~~~~~~~~l~~~~~~~ 170 (208)
T 2hpv_A 91 QFLSADKVVIANPMWNLNVPTRLKAWVDTINVAGKTFQYTAEGPKPLTSGKKALHIQSNGGFYEGKDFASQYIKAILNFI 170 (208)
T ss_dssp HHHHCSEEEEEEECBTTBCCHHHHHHHHHHCCBTTTEEEETTEEEESCCSCEEEEEEEESSCCCSCSHHHHHHHHHHHHT
T ss_pred HHHhCCEEEEEeccccCCCCHHHHHHHHHHhcCCcEeecCCCCCccCCCCCeEEEEEecCCCCCCcchHHHHHHHHHHhC
Confidence 35689999999987654333445678877742100 0 01246777777663322111 12234456667777
Q ss_pred CCc
Q psy10891 85 NFI 87 (142)
Q Consensus 85 ~~~ 87 (142)
|+.
T Consensus 171 G~~ 173 (208)
T 2hpv_A 171 GVD 173 (208)
T ss_dssp TCC
T ss_pred CCC
Confidence 764
No 326
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=21.12 E-value=1.3e+02 Score=17.32 Aligned_cols=76 Identities=7% Similarity=0.156 Sum_probs=38.5
Q ss_pred cCCEEEEEEeCCChhhHHHHHHHHHHHHHhcccCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCC
Q psy10891 18 DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEG 97 (142)
Q Consensus 18 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 97 (142)
..|++++=+++.+...++ ++..+.... +.+|+|++....+ .... ..+...|...|+. ..
T Consensus 49 ~~dlvi~d~~l~~~~g~~----~~~~l~~~~-----~~~~ii~ls~~~~-------~~~~-~~~~~~g~~~~l~----kp 107 (143)
T 3jte_A 49 SIDVVITDMKMPKLSGMD----ILREIKKIT-----PHMAVIILTGHGD-------LDNA-ILAMKEGAFEYLR----KP 107 (143)
T ss_dssp TCCEEEEESCCSSSCHHH----HHHHHHHHC-----TTCEEEEEECTTC-------HHHH-HHHHHTTCSEEEE----SS
T ss_pred CCCEEEEeCCCCCCcHHH----HHHHHHHhC-----CCCeEEEEECCCC-------HHHH-HHHHHhCcceeEe----CC
Confidence 467666655544433333 233333222 5778877765443 2222 2344556554544 34
Q ss_pred CCHHHHHHHHHHHHHHH
Q psy10891 98 LMVNDSMKFLLDVLMRQ 114 (142)
Q Consensus 98 ~~i~~l~~~l~~~~~~~ 114 (142)
....++...+...+..+
T Consensus 108 ~~~~~l~~~l~~~~~~~ 124 (143)
T 3jte_A 108 VTAQDLSIAINNAINRK 124 (143)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 56677776666555443
No 327
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=20.96 E-value=1.3e+02 Score=17.18 Aligned_cols=46 Identities=13% Similarity=0.124 Sum_probs=25.2
Q ss_pred CCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHHHH
Q psy10891 54 SPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111 (142)
Q Consensus 54 ~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 111 (142)
+.+|+|++....+ ... ...+...|...|+. ......++...+...+
T Consensus 79 ~~~~ii~ls~~~~-------~~~-~~~~~~~g~~~~l~----kp~~~~~l~~~l~~~~ 124 (140)
T 2qr3_A 79 RDLPVVLFTAYAD-------IDL-AVRGIKEGASDFVV----KPWDNQKLLETLLNAA 124 (140)
T ss_dssp TTCCEEEEEEGGG-------HHH-HHHHHHTTCCEEEE----ESCCHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCC-------HHH-HHHHHHcCchheee----CCCCHHHHHHHHHHHH
Confidence 5788888776543 122 22344556554543 2445667766665544
No 328
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=20.57 E-value=1.4e+02 Score=19.60 Aligned_cols=16 Identities=6% Similarity=0.158 Sum_probs=13.6
Q ss_pred ccCCEEEEEEeCCChh
Q psy10891 17 KDAHGCIIMFDLTNQN 32 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~~ 32 (142)
.++|++|++=|+.+..
T Consensus 31 ~~~D~vi~~GDl~~~~ 46 (260)
T 2yvt_A 31 KQPDILVVVGNILKNE 46 (260)
T ss_dssp HCCSEEEEESCCCCCH
T ss_pred cCCCEEEECCCCCCcc
Confidence 4799999999998754
No 329
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=20.44 E-value=78 Score=22.54 Aligned_cols=49 Identities=14% Similarity=0.179 Sum_probs=31.9
Q ss_pred CCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCceEEEeeccCCCCHHHHHHHHHH
Q psy10891 54 SPIPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLD 109 (142)
Q Consensus 54 ~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 109 (142)
.+.|+| |.+|.|.. .+.+...+++.+ .|++.++..+...+..+..++..
T Consensus 79 ~~~P~I-Iltrg~~~-----peelie~A~~~~-IPVL~T~~~ts~~~~~l~~~l~~ 127 (314)
T 1ko7_A 79 PETPAI-IVTRDLEP-----PEELIEAAKEHE-TPLITSKIATTQLMSRLTTFLEH 127 (314)
T ss_dssp TTCCCE-EECTTCCC-----CHHHHHHHHHTT-CCEEECCSCHHHHHHHHHHHHHH
T ss_pred CCCCEE-EEeCCCCC-----CHHHHHHHHHCC-CeEEEECCchhHHHHHHHHHHHH
Confidence 466765 56666642 445667788887 66888887777666666555443
No 330
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=20.31 E-value=1.6e+02 Score=18.81 Aligned_cols=51 Identities=10% Similarity=-0.046 Sum_probs=30.2
Q ss_pred hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcc----cCCCCCCCEEEEEeC
Q psy10891 14 VYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCT----LSDGSPIPCMLLANK 64 (142)
Q Consensus 14 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~~~~p~ilv~nK 64 (142)
.-+..||++||.+-+-...---.++.|+..+..... .....+++++++.+-
T Consensus 47 ~~l~~aD~iV~~~P~y~~~~pa~lK~~iDrv~~~g~~~~~~~~l~gK~~~~~~t~ 101 (177)
T 3ha2_A 47 SLLLQNDRIILEFPLYWYSAPALLKQWMDTVMTTKFATGHQYALEGKELGIVVST 101 (177)
T ss_dssp HHHHTCSEEEEEEECBTTBCCHHHHHHHHHHSCHHHHSTTTCTTTTCEEEEEEEE
T ss_pred HHHHhCCEEEEECChhhccCCHHHHHHHHHHhhcccccCCCcCCCCCEEEEEEeC
Confidence 345789999999987654322345678777642100 012356777776664
No 331
>2nx2_A Hypothetical protein YPSA; structural genomics, unknown function, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: c.129.1.2
Probab=20.16 E-value=1.3e+02 Score=19.34 Aligned_cols=18 Identities=11% Similarity=0.560 Sum_probs=12.3
Q ss_pred HhhhccCCEEEEEEeCCC
Q psy10891 13 RVYYKDAHGCIIMFDLTN 30 (142)
Q Consensus 13 ~~~~~~ad~ii~v~d~~~ 30 (142)
...+.++|++|.+||-..
T Consensus 125 ~~mvd~sD~liavyDg~~ 142 (181)
T 2nx2_A 125 QFFIDKSDGLLLLYDPEK 142 (181)
T ss_dssp HHHHHHSSEEEEECCTTT
T ss_pred HHHHHHCCEEEEEEcCCC
Confidence 334567888888887543
No 332
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=20.15 E-value=96 Score=21.04 Aligned_cols=73 Identities=5% Similarity=-0.114 Sum_probs=41.1
Q ss_pred hhhccCCEEEEEEeCCChhhHHHHHHHHHHHHHhcc-cCCCCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHcCCc
Q psy10891 14 VYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCT-LSDGSPIPCMLLANKCDLPHRQVDINDIECFYKEHNFI 87 (142)
Q Consensus 14 ~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~~~ 87 (142)
.-+..||++||+.-.-+..---.++.|+..+..... ...-.++|+.++++---... ......+..++...++.
T Consensus 94 ~~i~~AD~iI~~sP~Yn~sipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~tsG~~gg-~~a~~~Lr~~l~~lg~~ 167 (247)
T 2q62_A 94 ELSIWSEGQVWVSPERHGAMTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGSQS-FNAVNQMRILGRWMRMI 167 (247)
T ss_dssp HHHHHCSEEEEEEECSSSSCCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEECSSSCC-CHHHHHHHHHHHHTTCE
T ss_pred HHHHHCCEEEEEeCCCCCCccHHHHHHHHHhhhccCcccccCCCEEEEEEeCCCccH-HHHHHHHHHHHHHCCCE
Confidence 345689999999887664333345566655531100 01235788888887432111 12345666677777753
No 333
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=20.12 E-value=1.2e+02 Score=21.03 Aligned_cols=63 Identities=8% Similarity=-0.008 Sum_probs=38.3
Q ss_pred ccCCEEEEEEeCCCh-hhHHHHHHHHHHHHHhcccCCCC--CCCEEEEEeCCCCCCCCCCHHHHHHHHHHcC
Q psy10891 17 KDAHGCIIMFDLTNQ-NSFKNTLKWKKDVDLKCTLSDGS--PIPCMLLANKCDLPHRQVDINDIECFYKEHN 85 (142)
Q Consensus 17 ~~ad~ii~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~--~~p~ilv~nK~D~~~~~~~~~~~~~~~~~~~ 85 (142)
.++|+++++--.-.. .+-+.+..++..+-... + +.|+++--+ --.....++.+.+..++..+.
T Consensus 97 ~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~-----p~~~lPiilYn~-P~~tg~~l~~~~~~~La~~~p 162 (294)
T 3b4u_A 97 AGARNILLAPPSYFKNVSDDGLFAWFSAVFSKI-----GKDARDILVYNI-PSVTMVTLSVELVGRLKAAFP 162 (294)
T ss_dssp TTCSEEEECCCCSSCSCCHHHHHHHHHHHHHHH-----CTTCCCEEEEEC-HHHHSCCCCHHHHHHHHHHCT
T ss_pred cCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhc-----CCCCCcEEEEEC-cchhCcCCCHHHHHHHHHhCC
Confidence 489999988776665 57677777877775332 3 688775431 100012345677777774554
Done!