RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10891
(142 letters)
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 122 bits (308), Expect = 4e-36
Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 1/140 (0%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF + +Y+ A C+++FD+T N+FK W+ + ++ + D P ++L
Sbjct: 64 TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFP 121
NK DL +RQV + + N I + ETS KE + V + + + ++QE
Sbjct: 124 GNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELY 183
Query: 122 NNDDENMVKLSGPAPKVEKK 141
N E +KL
Sbjct: 184 NEFPEP-IKLDKNERAKASA 202
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 120 bits (303), Expect = 1e-35
Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 2/116 (1%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF + +Y+ A C++++D+TN +SF+N W+ + + ++ P ++L
Sbjct: 65 TAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVIL 124
Query: 62 ANKCDLPH--RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115
NK D + V + K I TS K + V+ + + + ++Q
Sbjct: 125 GNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN 180
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 111 bits (281), Expect = 2e-32
Identities = 29/114 (25%), Positives = 57/114 (50%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF + +Y+ + C++ F + + SF+N WKK+ + + P ++L
Sbjct: 63 TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL 122
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115
NK D+ RQV + + + +++ + ETS K+ V + + + ++ E
Sbjct: 123 GNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATE 176
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 104 bits (261), Expect = 3e-29
Identities = 39/126 (30%), Positives = 67/126 (53%), Gaps = 8/126 (6%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ A G I+++D+T +++F W +++ T + I ML+
Sbjct: 71 TAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELE---TYCTRNDIVNMLV 127
Query: 62 ANKCDLPHRQVDINDIECFYKEHN--FIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQN 119
NK D +R+VD N+ F ++H+ FI E S K V + + L++ +++ GL
Sbjct: 128 GNKIDKENREVDRNEGLKFARKHSMLFI---EASAKTCDGVQCAFEELVEKIIQTPGLWE 184
Query: 120 FPNNDD 125
N +
Sbjct: 185 SENQNS 190
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 101 bits (255), Expect = 1e-28
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 11/116 (9%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE F +T+ YY+ A C+++F T++ SF+ W++ V + IP L+
Sbjct: 61 TAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-----GDIPTALV 115
Query: 62 ANKCDLPH-RQVDINDIECFYKEHN--FIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
NK DL + + E K F TS KE L V++ K+L + +++
Sbjct: 116 QNKIDLLDDSCIKNEEAEGLAKRLKLRFY---RTSVKEDLNVSEVFKYLAEKHLQK 168
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 101 bits (254), Expect = 5e-28
Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 11/131 (8%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T +++DA G ++MFDLT+Q SF N W + + +L+
Sbjct: 91 TAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQ---ANAYCENPDIVLI 147
Query: 62 ANKCDLPH-RQVDINDIECFYKEHN--FIGWTETSTKEGLMVNDSMKFLLDVLMR--QEG 116
NK DLP R+V+ ++ + ETS G V +++ LLD++M+ ++
Sbjct: 148 GNKADLPDQREVNERQARELADKYGIPYF---ETSAATGQNVEKAVETLLDLIMKRMEQC 204
Query: 117 LQNFPNNDDEN 127
++ D N
Sbjct: 205 VEKTQIPDTVN 215
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 100 bits (252), Expect = 9e-28
Identities = 47/141 (33%), Positives = 69/141 (48%), Gaps = 7/141 (4%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G ERF + Y +D+ ++++D+TN NSF+ T KW DV + GS + ML+
Sbjct: 72 TAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTER----GSDVIIMLV 127
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNF 120
NK DL RQV I + E KE N + + ETS K G V + + L E Q+
Sbjct: 128 GNKTDLADKRQVSIEEGERKAKELNVM-FIETSAKAGYNVKQLFRRVAAALPGMESTQDR 186
Query: 121 PNNDDENMVKLSGPAPKVEKK 141
D + +KL P + +
Sbjct: 187 SREDMID-IKLEKPQEQPVSE 206
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 99 bits (250), Expect = 1e-27
Identities = 29/102 (28%), Positives = 41/102 (40%), Gaps = 3/102 (2%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
GQ M Y A G ++++D+TN SF+N W V S+ P+ L+
Sbjct: 63 IGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPL-VALV 121
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
NK DL H R + F +E+ S K G V
Sbjct: 122 GNKIDLEHMRTIKPEKHLRFCQENG-FSSHFVSAKTGDSVFL 162
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 100 bits (252), Expect = 1e-27
Identities = 34/143 (23%), Positives = 59/143 (41%), Gaps = 7/143 (4%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE+ + VYY A G I+ FD+T++ + +N +W K+ G+ P ++
Sbjct: 68 TAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVV----GNEAPIVVC 123
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNF 120
ANK D+ + +++ + K N + E S K L + + L
Sbjct: 124 ANKIDIKNRQKISKKLVMEVLKGKN-YEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFV 182
Query: 121 PN-NDDENMVKLSGPAPKVEKKE 142
N N + V +P+ K
Sbjct: 183 SNVNLEPTEVNYDYHSPEESKYI 205
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 100 bits (251), Expect = 2e-27
Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 7/142 (4%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ A G I+++D+T++ +F N +W K V+ +L+
Sbjct: 76 TAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN----DEAQLLLV 131
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR--QEGLQN 119
NK D+ R V + E KE I + E+S K VN+ L ++
Sbjct: 132 GNKSDMETRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLV 190
Query: 120 FPNNDDENMVKLSGPAPKVEKK 141
N E + ++ + K
Sbjct: 191 GVGNGKEGNISINSGSGNSSKS 212
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 99.2 bits (248), Expect = 3e-27
Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 10/132 (7%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ AHG I+++D+T+Q SF N +W +++D + + + +L+
Sbjct: 72 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN----VNKLLV 127
Query: 62 ANKCDLPH-RQVDINDIECFYKEHN--FIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQ 118
NKCDL + VD + F F+ ETS K V S + + ++ G
Sbjct: 128 GNKCDLTTKKVVDYTTAKEFADSLGIPFL---ETSAKNATNVEQSFMTMAAEIKKRMGPG 184
Query: 119 NFPNNDDENMVK 130
+++ VK
Sbjct: 185 ATAGGAEKSNVK 196
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 99.2 bits (248), Expect = 3e-27
Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 9/116 (7%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G ERF +T +++DA G +++FDLTN+ SF N W + + + +L
Sbjct: 77 TAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSEN---PDIVLC 133
Query: 62 ANKCDLPH-RQVDINDIECFYKEHN--FIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
NK DL R V + +++ + ETS G ++ +++ LLD++M++
Sbjct: 134 GNKSDLEDQRAVKEEEARELAEKYGIPYF---ETSAANGTNISHAIEMLLDLIMKR 186
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 98.3 bits (246), Expect = 3e-27
Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE ++ M Y + G + +F + N SF++ ++++ + + D +P +L+
Sbjct: 58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK---RVKDSDDVPMVLV 114
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
NK DL R V+ + + + I + ETS K V D+ L+ + +
Sbjct: 115 GNKSDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQH 166
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 98.9 bits (247), Expect = 5e-27
Identities = 35/116 (30%), Positives = 62/116 (53%), Gaps = 5/116 (4%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T+ YY+ A+G I+ +D+T ++SF + W +DV S I +L+
Sbjct: 85 TAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAG----SNIVQLLI 140
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116
NK DL R+V + + + + ++ + ETS K+ V ++ + L+ + G
Sbjct: 141 GNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHG 196
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 98.8 bits (247), Expect = 5e-27
Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 9/141 (6%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDV-DLKCTLSDGSPIPCML 60
T G +F M R+ H I++F +T++ S + K + +K ++ D IP ML
Sbjct: 63 TTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVED---IPVML 119
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNF 120
+ NKCD R+VD + + +E + ETS K V + F L+ E +N
Sbjct: 120 VGNKCDETQREVDTREAQAVAQEWK-CAFMETSAKMNYNVKEL--FQE--LLTLETRRNM 174
Query: 121 PNNDDENMVKLSGPAPKVEKK 141
N D +V+ K
Sbjct: 175 SLNIDGKRSGKQKRTDRVKGK 195
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 98.0 bits (244), Expect = 1e-26
Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 7/112 (6%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQER+ + +YY+ A I++FD++N N+ W + S +L+
Sbjct: 100 TAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLK------ISSNYIIILV 153
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113
ANK D QVDI +++ + +++N + + +TS K G + + L + + +
Sbjct: 154 ANKIDKNKFQVDILEVQKYAQDNN-LLFIQTSAKTGTNIKNIFYMLAEEIYK 204
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 96.5 bits (241), Expect = 3e-26
Identities = 32/129 (24%), Positives = 60/129 (46%), Gaps = 4/129 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE ++ M Y + G + +F + N SF++ +++ + + D +P +L+
Sbjct: 59 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK---RVKDSEDVPMVLV 115
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFP 121
NKCDLP R VD + + + I + ETS K V+D+ L+ + + + +
Sbjct: 116 GNKCDLPSRTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRKHKEKMSKD 174
Query: 122 NNDDENMVK 130
+ K
Sbjct: 175 GKKKKKKSK 183
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 96.1 bits (240), Expect = 3e-26
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ A G I+++D+T++ +F N +W K V+ +L+
Sbjct: 59 TAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDE----AQLLLV 114
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
NK D+ R V + E KE I + E+S K VN+ L ++ +
Sbjct: 115 GNKSDMETRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQEK 166
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 96.5 bits (241), Expect = 3e-26
Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 5/114 (4%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ A G I+++D+T + +F + KW K +D + +L+
Sbjct: 82 TAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS----EDAELLLV 137
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
NK D R++ E F ++ + + E S K+ V++ L+D ++++
Sbjct: 138 GNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 96.1 bits (240), Expect = 3e-26
Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 5/119 (4%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE + + Y++ G + +F +T SF T +++ + + + +P +L+
Sbjct: 73 TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFLLV 129
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQN 119
NK DL RQV + + + ++ N + + ETS K V+ L+ + ++ +
Sbjct: 130 GNKSDLEDKRQVSVEEAKNRAEQWN-VNYVETSAKTRANVDKVFFDLMREIRARKMEDS 187
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 97.1 bits (242), Expect = 4e-26
Identities = 33/143 (23%), Positives = 62/143 (43%), Gaps = 10/143 (6%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQER+ +T YY+ A G +I++D++ +S++N W ++ + L+
Sbjct: 69 TAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENAD----DNVAVGLI 124
Query: 62 ANKCDLPH-RQVDINDIECFYKEHN--FIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQ 118
NK DL H R V + + F +E+ F ETS V+ + + L++ + ++
Sbjct: 125 GNKSDLAHLRAVPTEESKTFAQENQLLFT---ETSALNSENVDKAFEELINTIYQKVSKH 181
Query: 119 NFPNNDDENMVKLSGPAPKVEKK 141
D +G +
Sbjct: 182 QMDLGDSSANGNANGASAPNGPT 204
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 96.2 bits (240), Expect = 5e-26
Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 14/147 (9%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ +HG II++D+T+Q SF W +++D T + + +L+
Sbjct: 64 TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATST----VLKLLV 119
Query: 62 ANKCDLPH-RQVDINDIECFYKEHN--FIGWTETSTKEGLMVNDS----MKFLLDVLMRQ 114
NKCDL R V+ + + F + F+ ETS + V D+ + + + + +Q
Sbjct: 120 GNKCDLKDKRVVEYDVAKEFADANKMPFL---ETSALDSTNVEDAFLTMARQIKESMSQQ 176
Query: 115 EGLQNFPNNDDENMVKLSGPAPKVEKK 141
+ +D+ V L G +
Sbjct: 177 NLNETTQKKEDKGNVNLKGQSLTNTGG 203
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 94.9 bits (237), Expect = 9e-26
Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 7/120 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDV-DLKCTLSDGSPIPCML 60
T GQ+ ++ + Y D +G I+++ +T+ SF+ + D+ IP ML
Sbjct: 61 TAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMV----GKVQIPIML 116
Query: 61 LANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQN 119
+ NK DL R + + + + N + E+S KE D + ++ + +G +
Sbjct: 117 VGNKKDLHMERVISYEEGKALAESWN-AAFLESSAKENQTAVDVFRRIILEAEKMDGACS 175
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 94.9 bits (237), Expect = 9e-26
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 4/115 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G +F M R+ H I+++ +T++ S + + + D IP ML+
Sbjct: 58 TTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICE--IKGDVESIPIMLV 115
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115
NKCD R+V ++ E + + ETS K V + + LL++ R+
Sbjct: 116 GNKCDESPSREVQSSEAEALARTWK-CAFMETSAKLNHNVKELFQELLNLEKRRT 169
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 95.4 bits (238), Expect = 1e-25
Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 16/122 (13%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF + + Y++ A G ++++D+T + SF N +W ++ +P ML+
Sbjct: 84 TAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAA----HETVPIMLV 139
Query: 62 ANKCDLPH-------RQVDINDIECFYKEHN--FIGWTETSTKEGLMVNDSMKFLLDVLM 112
NK D+ + V + E + F ETS K+G + +++ L +
Sbjct: 140 GNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFC---ETSAKDGSNIVEAVLHLAREVK 196
Query: 113 RQ 114
++
Sbjct: 197 KR 198
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 94.9 bits (237), Expect = 1e-25
Identities = 40/102 (39%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF + Y +D+ ++++D+TN NSF T KW DV + GS + ML+
Sbjct: 70 TAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTER----GSDVIIMLV 125
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
NK DL RQV + E KE N + + ETS K G V
Sbjct: 126 GNKTDLSDKRQVSTEEGERKAKELNVM-FIETSAKAGYNVKQ 166
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 94.5 bits (236), Expect = 1e-25
Identities = 18/102 (17%), Positives = 39/102 (38%), Gaps = 5/102 (4%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
Q+ W+ +I++ +T++ SF+ + + + +P +L+
Sbjct: 56 IWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLR---RARQTDDVPIILV 112
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
NK DL R+V +++ + + ETS V
Sbjct: 113 GNKSDLVRSREVSVDEGRACAVVFD-CKFIETSAALHHNVQA 153
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 95.0 bits (237), Expect = 1e-25
Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 10/118 (8%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ AHG I+++D+T+Q SF N +W +++D + + + +L+
Sbjct: 89 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN----VNKLLV 144
Query: 62 ANKCDLPH-RQVDINDIECFYKEHN--FIGWTETSTKEGLMVNDSMKFLLDVLMRQEG 116
NKCDL + VD + F F+ ETS K V S + + ++ G
Sbjct: 145 GNKCDLTTKKVVDYTTAKEFADSLGIPFL---ETSAKNATNVEQSFMTMAAEIKKRMG 199
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 95.0 bits (237), Expect = 1e-25
Identities = 34/140 (24%), Positives = 56/140 (40%), Gaps = 7/140 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G ER+ +T YY+ A G I+M+D+TN+ SF W + +L+
Sbjct: 64 TAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW----DNAQVLLV 119
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNF 120
NKCD+ R V + E S K+ + V + + L+DV+ +
Sbjct: 120 GNKCDMEDERVVSSERGRQLADHLG-FEFFEASAKDNINVKQTFERLVDVICEKMSESLD 178
Query: 121 PNNDDENMVKLSGPAPKVEK 140
+ K GP ++
Sbjct: 179 TADPAVTGAK-QGPQLTDQQ 197
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 94.1 bits (235), Expect = 1e-25
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE + + Y++ G + +F +T SF T +++ + + + +P +L+
Sbjct: 59 TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQI---LRVKEDENVPFLLV 115
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
NK DL RQV + + + + N + + ETS K V+
Sbjct: 116 GNKSDLEDKRQVSVEEAKNRADQWN-VNYVETSAKTRANVDK 156
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 94.1 bits (235), Expect = 1e-25
Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 10/105 (9%)
Query: 2 TEGQERFT-WMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
Q W+ + +I+F +T++ SF + + +P +L
Sbjct: 58 IWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRL---RAGRPHHDLPVIL 114
Query: 61 LANKCDLPH-RQVDINDIECFYKEHN--FIGWTETSTKEGLMVND 102
+ NK DL R+V + + + I ETS +
Sbjct: 115 VGNKSDLARSREVSLEEGRHLAGTLSCKHI---ETSAALHHNTRE 156
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 94.6 bits (236), Expect = 2e-25
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 6/114 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQER+ +T YY+ A G ++M+D+ NQ SF W + +L+
Sbjct: 78 TAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSW----DNAQVILV 133
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
NKCDL R V D + + E S KE + V + L+DV+ +
Sbjct: 134 GNKCDLEDERVVPAEDGRRLADDLG-FEFFEASAKENINVKQVFERLVDVICEK 186
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 95.0 bits (237), Expect = 2e-25
Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 10/125 (8%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T+ YY+ A+ I+ +D+T + SF+ +W ++++ + + + +L+
Sbjct: 82 TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS----NKVITVLV 137
Query: 62 ANKCDLPH-RQVDINDIECFYKEHN--FIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQ 118
NK DL R+V E F + + ++ ETS KE V L L+ +
Sbjct: 138 GNKIDLAERREVSQQRAEEFSEAQDMYYL---ETSAKESDNVEKLFLDLACRLISEARQN 194
Query: 119 NFPNN 123
NN
Sbjct: 195 TLVNN 199
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 94.7 bits (236), Expect = 2e-25
Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 10/136 (7%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQER+ +T YY+ A G ++++D+ +++N +W K++ S I ML+
Sbjct: 61 TAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLV 116
Query: 62 ANKCDLPH-RQVDINDIECFYKEHN--FIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQ 118
NK DL H R V ++ F +++N FI ETS + V ++ K +L + R +
Sbjct: 117 GNKSDLRHLRAVPTDEARAFAEKNNLSFI---ETSALDSTNVEEAFKNILTEIYRIVSQK 173
Query: 119 NFPNNDDENMVKLSGP 134
+ + +
Sbjct: 174 QIADRAAHDESPGNNV 189
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 94.7 bits (236), Expect = 2e-25
Identities = 23/129 (17%), Positives = 50/129 (38%), Gaps = 5/129 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G + + Y+ + I++FD+++ SF++ W + + P+ +L+
Sbjct: 80 TAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLK-SARPDRERPLRAVLV 138
Query: 62 ANKCDLPH--RQVDINDIECFYKEHNFIGWTETSTK-EGLMVNDSMKFLLDVLMRQEGLQ 118
ANK DLP QV ++ + + + + + + S G + + R +
Sbjct: 139 ANKTDLPPQRHQVRLDMAQDWATTNT-LDFFDVSANPPGKDADAPFLSIATTFYRNYEDK 197
Query: 119 NFPNNDDEN 127
D
Sbjct: 198 VAAFQDACR 206
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 94.2 bits (235), Expect = 3e-25
Identities = 31/101 (30%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE ++ M Y + G + +F + N SF + +++ + + D +P +L+
Sbjct: 76 TAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIK---RVKDSDDVPMVLV 132
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
NKCDLP R VD K + I + ETS K V D
Sbjct: 133 GNKCDLPTRTVDTKQAHELAKSYG-IPFIETSAKTRQGVED 172
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 94.7 bits (236), Expect = 3e-25
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 7/117 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE+F + YY A IIMFD+T++ ++KN W +D+ C IP +L
Sbjct: 71 TAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-----ENIPIVLC 125
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQ 118
NK D+ R+V F+++ N + + + S K +L L+ L+
Sbjct: 126 GNKVDIKDRKV-KAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 180
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 93.8 bits (234), Expect = 3e-25
Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 11/116 (9%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ HG I+++D+T+ SF N +W +++ C + +L+
Sbjct: 65 TAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-----DDVCRILV 119
Query: 62 ANKCDLPH-RQVDINDIECFYKEHN--FIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
NK D P + V+ D F + ETS KE + V + + ++++R
Sbjct: 120 GNKNDDPERKVVETEDAYKFAGQMGIQLF---ETSAKENVNVEEMFNCITELVLRA 172
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 93.7 bits (234), Expect = 3e-25
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE F M Y + HG +++F + ++ SF K + + D P +L+
Sbjct: 64 TAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQI---LRVKDRDDFPVVLV 120
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
NK DL RQV ++ F H+ + + E S K L V++
Sbjct: 121 GNKADLESQRQVPRSEASAFGASHH-VAYFEASAKLRLNVDE 161
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 94.2 bits (235), Expect = 3e-25
Identities = 33/141 (23%), Positives = 65/141 (46%), Gaps = 9/141 (6%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE + + Y++ G + +F +T SF T +++ + + + +P +L+
Sbjct: 69 TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFLLV 125
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNF 120
NK DL RQV + + + ++ N + + ETS K V+ F LMR+ +
Sbjct: 126 GNKSDLEDKRQVSVEEAKNRAEQWN-VNYVETSAKTRANVDKV--FFD--LMREIRARKM 180
Query: 121 PNNDDENMVKLSGPAPKVEKK 141
++ ++N K K ++
Sbjct: 181 EDSKEKNGKKKRKSLAKRIRE 201
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 93.8 bits (234), Expect = 4e-25
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 6/114 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQER+ +T YY+ A G I+M+D+TN+ SF W + +L+
Sbjct: 79 TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSW----DNAQVILV 134
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
NKCD+ R V + ++ + E S KE + V + + L+D + +
Sbjct: 135 GNKCDMEEERVVPTEKGQLLAEQLG-FDFFEASAKENISVRQAFERLVDAICDK 187
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 93.4 bits (233), Expect = 5e-25
Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 10/121 (8%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQER+ + +YY+ A II+FD+TNQ SF+ KW +++ + + L
Sbjct: 68 TAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQG----NPNMVMALA 123
Query: 62 ANKCDLPH-RQVDINDIECFYKEHN--FIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQ 118
NK DL R+V D + + +E+ F+ ETS K V + + L R + +
Sbjct: 124 GNKSDLLDARKVTAEDAQTYAQENGLFFM---ETSAKTATNVKEIFYEIARRLPRVQPTE 180
Query: 119 N 119
N
Sbjct: 181 N 181
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 93.0 bits (232), Expect = 5e-25
Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 6/114 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ A G ++++D+TN+ SF N W ++++ + + + M+L
Sbjct: 64 TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS----ADVEKMIL 119
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
NKCD+ RQV E ++ I + ETS K + V ++ L + +
Sbjct: 120 GNKCDVNDKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARDIKAK 172
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 92.5 bits (231), Expect = 6e-25
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G E+F M +Y K+ G I+++ L NQ SF++ + + + +P +L+
Sbjct: 58 TAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQI---IRVKRYEKVPVILV 114
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
NK DL R+V ++ +E + ETS K MV++
Sbjct: 115 GNKVDLESEREVSSSEGRALAEEWG-CPFMETSAKSKTMVDE 155
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 93.1 bits (232), Expect = 6e-25
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF + +YY+ + +I++D+T Q+SF KW K++ I +
Sbjct: 79 TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHG----PENIVMAIA 134
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQN 119
NKCDL R+V + D + + + ETS K + + + + + + + +N
Sbjct: 135 GNKCDLSDIREVPLKDAKEYAESIG-AIVVETSAKNAINIEELFQGISRQIPPLDPHEN 192
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 93.1 bits (232), Expect = 6e-25
Identities = 31/104 (29%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G ER+ +T YY+ A G ++++D+ +++N +W K++ S I ML+
Sbjct: 85 TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLV 140
Query: 62 ANKCDLPH-RQVDINDIECFYKEHN--FIGWTETSTKEGLMVND 102
NK DL H R V ++ F +++ FI ETS + V
Sbjct: 141 GNKSDLRHLRAVPTDEARAFAEKNGLSFI---ETSALDSTNVEA 181
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 92.6 bits (231), Expect = 6e-25
Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G E+FT M +Y K+ G +++ +T Q++F + ++ + + D +P +L+
Sbjct: 58 TAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL---RVKDTEDVPMILV 114
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
NKCDL R V + ++ + E+S K + VN+
Sbjct: 115 GNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNE 156
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 93.1 bits (232), Expect = 7e-25
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 10/104 (9%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G ER+ +T YY+ A G +++FDLT ++ +W K++ + I ML+
Sbjct: 81 TAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAE----ATIVVMLV 136
Query: 62 ANKCDLPH-RQVDINDIECFYKEHN--FIGWTETSTKEGLMVND 102
NK DL R+V + F + + F+ ETS + V
Sbjct: 137 GNKSDLSQAREVPTEEARMFAENNGLLFL---ETSALDSTNVEL 177
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 92.6 bits (231), Expect = 8e-25
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 10/104 (9%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +TR YY+ A G ++++D+T ++++ + W D +L+
Sbjct: 71 TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN----PNTVIILI 126
Query: 62 ANKCDLPH-RQVDINDIECFYKEHN--FIGWTETSTKEGLMVND 102
NK DL R V + + F +E+ F+ E S K G V D
Sbjct: 127 GNKADLEAQRDVTYEEAKQFAEENGLLFL---EASAKTGENVED 167
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 92.2 bits (230), Expect = 1e-24
Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 10/104 (9%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +TR YY+ A G ++++D+T++ ++ W D L+ + I +L
Sbjct: 66 TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDAR---MLASQN-IVIILC 121
Query: 62 ANKCDLPH-RQVDINDIECFYKEHN--FIGWTETSTKEGLMVND 102
NK DL R+V + F +E+ F+ ETS G V +
Sbjct: 122 GNKKDLDADREVTFLEASRFAQENELMFL---ETSALTGENVEE 162
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 92.2 bits (230), Expect = 1e-24
Identities = 40/104 (38%), Positives = 54/104 (51%), Gaps = 10/104 (9%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+DAH ++++D+TN+ SF N W ++ + MLL
Sbjct: 67 TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQ----HDVALMLL 122
Query: 62 ANKCDLPH-RQVDINDIECFYKEHN--FIGWTETSTKEGLMVND 102
NK D H R V D E KE+ F+ ETS K GL V+
Sbjct: 123 GNKVDSAHERVVKREDGEKLAKEYGLPFM---ETSAKTGLNVDL 163
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 92.3 bits (230), Expect = 2e-24
Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 10/104 (9%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +TR YY+ A G ++++D+T++ ++ + W D TL+ + I +L
Sbjct: 81 TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDAR---TLASPN-IVVILC 136
Query: 62 ANKCDLPH-RQVDINDIECFYKEHN--FIGWTETSTKEGLMVND 102
NK DL R+V + F +E+ F+ ETS G V +
Sbjct: 137 GNKKDLDPEREVTFLEASRFAQENELMFL---ETSALTGENVEE 177
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 91.4 bits (228), Expect = 2e-24
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF + +YY+D++G I+++D+T+++SF+ W K++ G+ I ++
Sbjct: 62 TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML----GNEICLCIV 117
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
NK DL R V I + E + + TS K+ + +
Sbjct: 118 GNKIDLEKERHVSIQEAESYAESVGAK-HYHTSAKQNKGIEE 158
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 91.9 bits (229), Expect = 2e-24
Identities = 22/120 (18%), Positives = 53/120 (44%), Gaps = 7/120 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDV-DLKCTLSDGSPIPCML 60
T GQ+ ++ + + HG ++++ +T+ +SF+ + + + + +P +L
Sbjct: 79 TAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGH----GKTRVPVVL 134
Query: 61 LANKCDL-PHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQN 119
+ NK DL P R+V + + + + E+S +E + ++ + R E
Sbjct: 135 VGNKADLSPEREVQAVEGKKLAESWG-ATFMESSARENQLTQGIFTKVIQEIARVENSYG 193
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 91.5 bits (228), Expect = 2e-24
Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 10/104 (9%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE F +TR YY+ A G ++++D+T + +F + W +D + S + ML+
Sbjct: 77 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSS----SNMVIMLI 132
Query: 62 ANKCDLPH-RQVDINDIECFYKEHN--FIGWTETSTKEGLMVND 102
NK DL R V + E F +EH F+ ETS K V +
Sbjct: 133 GNKSDLESRRDVKREEGEAFAREHGLIFM---ETSAKTACNVEE 173
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 91.5 bits (228), Expect = 3e-24
Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 10/105 (9%)
Query: 2 TEGQERFT-WMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
Q W+ + +I+F +T++ SF + + +P +L
Sbjct: 79 IWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRL---RAGRPHHDLPVIL 135
Query: 61 LANKCDLPH-RQVDINDIECFYKEHN--FIGWTETSTKEGLMVND 102
+ NK DL R+V + + + I ETS +
Sbjct: 136 VGNKSDLARSREVSLEEGRHLAGTLSCKHI---ETSAALHHNTRE 177
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 91.1 bits (227), Expect = 3e-24
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
Query: 2 TEGQERFTW-MTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
T GQERF M + YY++ H + ++D+TN SF + W ++ + IP +L
Sbjct: 76 TAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECK---QHLLANDIPRIL 132
Query: 61 LANKCDLPH-RQVDINDIECFYKEHN--FIGWTETSTK 95
+ NKCDL QV + + F H+ ETS K
Sbjct: 133 VGNKCDLRSAIQVPTDLAQKFADTHSMPLF---ETSAK 167
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 90.3 bits (225), Expect = 5e-24
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G ERF + +YY+ + II++D+T + +F W +++ I +
Sbjct: 62 TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHG----PPSIVVAIA 117
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
NKCDL R+V D + + + I + ETS K + +N+
Sbjct: 118 GNKCDLTDVREVMERDAKDYADSIHAI-FVETSAKNAININE 158
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 90.3 bits (225), Expect = 6e-24
Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE F+ M Y + G +I++ +T++ SF++ ++ + + + D P +L+
Sbjct: 73 TAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLIL---RVKDRESFPMILV 129
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEG 97
ANK DL H R+V + + ++N I + ETS K+
Sbjct: 130 ANKVDLMHLRKVTRDQGKEMATKYN-IPYIETSAKDP 165
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 89.5 bits (223), Expect = 8e-24
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 8/103 (7%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSP-IPCML 60
T GQER+ + +YY+ A I+++D+TN+ SF W K++ SP I L
Sbjct: 62 TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQ-----RQASPNIVIAL 116
Query: 61 LANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
NK DL + R VD + + + +++ + + ETS K + VN+
Sbjct: 117 SGNKADLANKRAVDFQEAQSYADDNS-LLFMETSAKTSMNVNE 158
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 89.3 bits (222), Expect = 3e-23
Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 11/104 (10%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
+G+ + + + +I++ +T++ SF+ + + + IP +L+
Sbjct: 97 NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQL---RRARQTEDIPIILV 151
Query: 62 ANKCDLPH-RQVDINDIECFYKEHN--FIGWTETSTKEGLMVND 102
NK DL R+V +++ + FI ETS V +
Sbjct: 152 GNKSDLVRCREVSVSEGRACAVVFDCKFI---ETSAAVQHNVKE 192
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 87.2 bits (217), Expect = 1e-22
Identities = 16/104 (15%), Positives = 35/104 (33%), Gaps = 11/104 (10%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
G + + +F L ++ SF+ + + C+ + S +P +L+
Sbjct: 74 EGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRL---CSFRNASEVPMVLV 125
Query: 62 ANKCDLP---HRQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
+ + R +D + + + ET GL V
Sbjct: 126 GTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVER 169
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 86.1 bits (214), Expect = 3e-22
Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 4/96 (4%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T + R Y AH ++++ + ++ SF ++ + + + L + IP +LL
Sbjct: 76 TADLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQ-RSIPALLL 133
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKE 96
NK D+ RQV + + E S
Sbjct: 134 GNKLDMAQYRQVTKAEGVALAGRFG-CLFFEVSACL 168
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 84.5 bits (210), Expect = 9e-22
Identities = 18/104 (17%), Positives = 41/104 (39%), Gaps = 7/104 (6%)
Query: 2 TEGQERF--TWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCM 59
T E+ +W + +I++ + ++ SF++ + + + +P +
Sbjct: 59 TWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQL---RRTHQADHVPII 115
Query: 60 LLANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
L+ NK DL R+V + + + + ETS V +
Sbjct: 116 LVGNKADLARCREVSVEEGRACAVVFD-CKFIETSATLQHNVAE 158
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 84.6 bits (210), Expect = 9e-22
Identities = 17/103 (16%), Positives = 32/103 (31%), Gaps = 7/103 (6%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVD-LKCTLSDGSPIPCML 60
G + A I +F L ++NSF+ + + L+ G + +
Sbjct: 61 EAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVG 115
Query: 61 LANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
++ R V + + ET GL V+
Sbjct: 116 TQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDR 158
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 84.3 bits (209), Expect = 2e-21
Identities = 20/104 (19%), Positives = 43/104 (41%), Gaps = 11/104 (10%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
+G+ + + + +I++ +T++ SF+ + + + IP +L+
Sbjct: 66 NKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQL---RRARQTEDIPIILV 120
Query: 62 ANKCDLPH-RQVDINDIECFYKEHN--FIGWTETSTKEGLMVND 102
NK DL R+V +++ + FI ETS V +
Sbjct: 121 GNKSDLVRXREVSVSEGRAXAVVFDXKFI---ETSAAVQHNVKE 161
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 83.0 bits (206), Expect = 5e-21
Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 7/119 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQE + + G ++++D+T++ SF+ L K + + + +L+
Sbjct: 83 TAGQEDT-IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNIL---DEIKKPKNVTLILV 138
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLM-VNDSMKFLLDVLMRQEGLQ 118
NK DL H RQV + E E + E S G + + L + R+ +Q
Sbjct: 139 GNKADLDHSRQVSTEEGEKLATELA-CAFYECSACTGEGNITEIFYELCREVRRRRMVQ 196
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 73.5 bits (181), Expect = 2e-17
Identities = 14/118 (11%), Positives = 39/118 (33%), Gaps = 10/118 (8%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLK-WKKDVDLKCTLSDGSPIPCML 60
G+E F + + ++DL+ + + +K W ++ + S P +L
Sbjct: 63 FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA-----SSSPVIL 117
Query: 61 LANKCDLPH----RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
+ D+ + + + F + +D++ L ++ +
Sbjct: 118 VGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINE 175
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 72.9 bits (179), Expect = 3e-17
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 9/105 (8%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF + YY++A ++++D+T SF W K++ + I L+
Sbjct: 59 TAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQA----SKDIIIALV 114
Query: 62 ANKCDLPH----RQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
NK D R+V + E +E + + ETS K G VND
Sbjct: 115 GNKIDXLQEGGERKVAREEGEKLAEEKGLL-FFETSAKTGENVND 158
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 74.3 bits (182), Expect = 1e-16
Identities = 18/117 (15%), Positives = 39/117 (33%), Gaps = 10/117 (8%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
GQE + + + +++ D + N W + ++ G P +++
Sbjct: 105 FGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEKY-----GGKSPVIVV 156
Query: 62 ANKCDLPH-RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGL 117
NK D ++ I + + S K G V K L ++ + +
Sbjct: 157 MNKIDENPSYNIEQKKINERFPAIE-NRFHRISCKNGDGVESIAKSLKSAVLHPDSI 212
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 61.2 bits (149), Expect = 1e-12
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 11/103 (10%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y D+ ++ F + N+ SF N KW+ ++ D + +L
Sbjct: 78 TAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI---DTAKT--VL 132
Query: 61 LANKCDL---PHRQVDINDIECFYKEHNFIGWTETS--TKEGL 98
+ K DL V + + ++ + + E S K GL
Sbjct: 133 VGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGL 175
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 57.4 bits (139), Expect = 3e-11
Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 19/111 (17%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y+ A I+ F L ++ S++N KW ++ G PI +L
Sbjct: 63 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA---PGVPI--VL 117
Query: 61 LANKCDL-----------PHRQVDINDIECFYKEHNFIGWTETS--TKEGL 98
+ K DL + E K + E S ++E +
Sbjct: 118 VGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENV 168
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 55.9 bits (135), Expect = 1e-10
Identities = 23/113 (20%), Positives = 46/113 (40%), Gaps = 21/113 (18%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQ+ + + ++Y DA ++ FD+T+ NSF N +W +V+ C +P ++
Sbjct: 89 TAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC-----KKVPIIV 143
Query: 61 LANKCDL-------------PHRQVDINDIECFYKEHNFIGWTETS--TKEGL 98
+ K DL V + + + + + E S + +
Sbjct: 144 VGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNV 196
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 55.5 bits (134), Expect = 1e-10
Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 21/113 (18%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y D ++ F + + +S +N KW +V C +P +L
Sbjct: 80 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-----PNVPIIL 134
Query: 61 LANKCDL-------------PHRQVDINDIECFYKEHNFIGWTETS--TKEGL 98
+ NK DL V + + G+ E S TKEG+
Sbjct: 135 VGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGV 187
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 54.8 bits (132), Expect = 4e-10
Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 21/113 (18%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y D ++ F + + +S +N KW +V C PI +L
Sbjct: 80 TAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC---PNVPI--IL 134
Query: 61 LANKCDL-------------PHRQVDINDIECFYKEHNFIGWTETS--TKEGL 98
+ANK DL V +D + E S TKEG+
Sbjct: 135 VANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGV 187
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 54.4 bits (131), Expect = 5e-10
Identities = 27/113 (23%), Positives = 40/113 (35%), Gaps = 21/113 (18%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y +I F L + SF+N KW +V C P +L
Sbjct: 85 TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIIL 139
Query: 61 LANKCDLPH-------------RQVDINDIECFYKEHNFIGWTETS--TKEGL 98
+ K DL + KE + + E S T+ GL
Sbjct: 140 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGL 192
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 53.9 bits (130), Expect = 5e-10
Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 19/110 (17%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T G + + + Y D+ +I FD++ + + L KWK ++ C +L
Sbjct: 62 TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-----PNTKMLL 116
Query: 61 LANKCDL-------------PHRQVDINDIECFYKEHNFIGWTETSTKEG 97
+ K DL V + K+ + E S +
Sbjct: 117 VGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQS 166
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 54.0 bits (130), Expect = 5e-10
Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 19/110 (17%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T G + + + Y D+ +I FD++ + + L KWK ++ C +L
Sbjct: 83 TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-----PNTKMLL 137
Query: 61 LANKCDL-------------PHRQVDINDIECFYKEHNFIGWTETSTKEG 97
+ K DL V + K+ + E S +
Sbjct: 138 VGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQS 187
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 53.6 bits (129), Expect = 7e-10
Identities = 21/115 (18%), Positives = 43/115 (37%), Gaps = 19/115 (16%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQ+ F + + Y + ++ F + + +SF+N KW ++ C +PI +L
Sbjct: 75 TAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC---PKAPI--IL 129
Query: 61 LANKCDL-------------PHRQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
+ + DL + V + +E + E S + +
Sbjct: 130 VGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKE 184
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 53.9 bits (130), Expect = 8e-10
Identities = 24/109 (22%), Positives = 45/109 (41%), Gaps = 17/109 (15%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQE ++ + + Y+ A ++ F L ++ S++N L KW ++ PI +L
Sbjct: 64 TAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA---PNVPI--VL 118
Query: 61 LANKCDL---------PHRQVDINDIECFYKEHNFIGWTETS--TKEGL 98
+ K DL + E K+ + E S T++ +
Sbjct: 119 VGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNV 167
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 53.2 bits (128), Expect = 1e-09
Identities = 17/112 (15%), Positives = 39/112 (34%), Gaps = 2/112 (1%)
Query: 4 GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVD-LKCTLSDGSPIPCMLLA 62
GQ + ++ + G + + D N + + L +P ++
Sbjct: 83 GQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQV 142
Query: 63 NKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
NK DLP + + + E EG V +++K + +++ +
Sbjct: 143 NKRDLPDA-LPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLAR 193
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 52.1 bits (125), Expect = 3e-09
Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 19/115 (16%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y +I F + N SF+N +W ++ +P +L
Sbjct: 73 TAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPN-----VPFLL 127
Query: 61 LANKCDLPHRQ-------------VDINDIECFYKEHNFIGWTETSTKEGLMVND 102
+ + DL + + + KE + E S +
Sbjct: 128 IGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKT 182
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 52.7 bits (126), Expect = 3e-09
Identities = 15/88 (17%), Positives = 36/88 (40%), Gaps = 8/88 (9%)
Query: 18 DAHGCIIMFDLTNQN--SFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH-RQVDI 74
G ++ D++ +F + LK+ ++ + + P +++ KCD R +
Sbjct: 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQL---AKTKKPIVVVLTKCDEGVERYIRD 218
Query: 75 NDIECFYKEHNFIGWTETSTKEGLMVND 102
K++ + ETS + + V+
Sbjct: 219 AHTFALSKKN--LQVVETSARSNVNVDL 244
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 51.7 bits (124), Expect = 4e-09
Identities = 27/113 (23%), Positives = 40/113 (35%), Gaps = 21/113 (18%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y +I F L + SF+N KW +V C P +L
Sbjct: 60 TAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIIL 114
Query: 61 LANKCDLPH-------------RQVDINDIECFYKEHNFIGWTETS--TKEGL 98
+ K DL + KE + + E S T+ GL
Sbjct: 115 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGL 167
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 48.7 bits (116), Expect = 6e-08
Identities = 16/110 (14%), Positives = 34/110 (30%), Gaps = 19/110 (17%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKN-TLKWKKDVDLKCTLSDGSPIPCML 60
T G + + + Y D+ ++ FD++ + + KW+ ++ C +L
Sbjct: 82 TSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPS-----TRVLL 136
Query: 61 LANKCDL-------------PHRQVDINDIECFYKEHNFIGWTETSTKEG 97
+ K DL + K+ + E S
Sbjct: 137 IGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTS 186
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 45.4 bits (107), Expect = 1e-06
Identities = 26/114 (22%), Positives = 39/114 (34%), Gaps = 23/114 (20%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTL-KWKKDVDLKCTLSDGSP-IPCM 59
T G E + + + Y +I F L + SF + KW +V C P P +
Sbjct: 210 TAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC------PNTPII 263
Query: 60 LLANKCDL-------------PHRQVDINDIECFYKEHNFIGWTETS--TKEGL 98
L+ K DL + KE + + E S T+ GL
Sbjct: 264 LVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGL 317
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GTP; 2.00A {Homo sapiens}
Length = 190
Score = 33.0 bits (76), Expect = 0.017
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 9/70 (12%)
Query: 4 GQERFTWMTRVYYKDAHGCIIMFDLTNQNSF---KNTL-KWKKDVDLKCTLSDGSPIPCM 59
GQ R+ + YYK+ I + D +++ K L D+K IP +
Sbjct: 76 GQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIK-----HRRIPIL 130
Query: 60 LLANKCDLPH 69
ANK DL
Sbjct: 131 FFANKMDLRD 140
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 31.9 bits (73), Expect = 0.052
Identities = 10/56 (17%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 56 IPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111
IP +++ NK D+ + + +++ Y+ S + +D K + ++L
Sbjct: 141 IPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEIL 194
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 30.0 bits (68), Expect = 0.17
Identities = 14/66 (21%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 4 GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
GQ++ + R Y+++ G I + D ++ + + + + + L D ++ AN
Sbjct: 82 GQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRD---AVLLVFAN 138
Query: 64 KCDLPH 69
K D+P+
Sbjct: 139 KQDMPN 144
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 30.2 bits (69), Expect = 0.18
Identities = 14/95 (14%), Positives = 27/95 (28%), Gaps = 13/95 (13%)
Query: 3 EGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLA 62
EG R +R+ +A + + DL + + ++ + + +A
Sbjct: 301 EGIRR----SRMKMAEADLILYLLDLGTERLDDELTEIRE------LKAAHPAAKFLTVA 350
Query: 63 NKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEG 97
NK D + I S G
Sbjct: 351 NKLDRAANADALIRAIADGTGTEVI---GISALNG 382
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane
trafficking, structural genomics consortium, SGC,
transport protein; HET: GDP; 1.70A {Homo sapiens} PDB:
2h16_A* 1z6y_A* 1yzg_A*
Length = 181
Score = 29.5 bits (67), Expect = 0.28
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 15/71 (21%)
Query: 4 GQE--RFTWMTRVYYKDAHGCIIMFDLTNQNSF---KNTL-KWKKDVDLKCTLSDGSPIP 57
GQE R +W YY + I++ D T++ + L K DL+ + +
Sbjct: 74 GQESLRSSW--NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLR-----KAGL- 125
Query: 58 CMLLANKCDLP 68
++ ANK D+
Sbjct: 126 -LIFANKQDVK 135
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport
protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 187
Score = 29.5 bits (67), Expect = 0.29
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 15/71 (21%)
Query: 4 GQE--RFTWMTRVYYKDAHGCIIMFDLTNQNSF---KNTL-KWKKDVDLKCTLSDGSPIP 57
GQE R +W YY + I++ D T++ + L K DL+ + +
Sbjct: 69 GQESLRSSW--NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLR-----KAGL- 120
Query: 58 CMLLANKCDLP 68
++ ANK D+
Sbjct: 121 -LIFANKQDVK 130
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein
binding; HET: GDP; 3.17A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 183
Score = 28.8 bits (65), Expect = 0.43
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 11/70 (15%)
Query: 4 GQERFTWMTRVYYKDAHGCIIMFDLTNQNSF---KNTL-KWKKDVDLKCTLSDGSPIPCM 59
GQ R YY D I + D T+++ L ++ +L+ + + +
Sbjct: 71 GQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQ-----DAAL--L 123
Query: 60 LLANKCDLPH 69
+ ANK D P
Sbjct: 124 VFANKQDQPG 133
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor,
protein transport-exchang complex; HET: GDP; 1.46A {Bos
taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A*
1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A*
1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A*
2a5f_A* 2j5x_A* 1e0s_A* ...
Length = 164
Score = 28.7 bits (65), Expect = 0.49
Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 11/69 (15%)
Query: 4 GQERFTWMTRVYYKDAHGCIIMFDLTNQNSF---KNTL-KWKKDVDLKCTLSDGSPIPCM 59
GQ++ + R Y+++ G I + D ++ + L + + +L+ + + +
Sbjct: 53 GQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELR-----DAVL--L 105
Query: 60 LLANKCDLP 68
+ ANK DLP
Sbjct: 106 VFANKQDLP 114
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding,
membrane trafficking, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Length = 188
Score = 28.7 bits (65), Expect = 0.52
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 4 GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDG--SPIPCMLL 61
GQ RF M Y + + M D +Q + + K+ +L L IP ++L
Sbjct: 76 GQPRFRSMWERYCRGVSAIVYMVDAADQEKIEAS----KN-ELHNLLDKPQLQGIPVLVL 130
Query: 62 ANKCDLPH 69
NK DLP
Sbjct: 131 GNKRDLPG 138
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 28.2 bits (64), Expect = 0.91
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 57 PCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEG 97
P +L+ NK DL + I +E + T+ +
Sbjct: 332 PLILVMNKIDLV-EKQLITSLEYPENITQIV---HTAAAQK 368
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 27.9 bits (63), Expect = 1.0
Identities = 12/95 (12%), Positives = 33/95 (34%), Gaps = 17/95 (17%)
Query: 3 EGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLA 62
G ER T + A + + D ++ ++D + + + +++
Sbjct: 312 LGIER----TLQEIEKADIVLFVLDASSPLD-------EEDRKILERIKN---KRYLVVI 357
Query: 63 NKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEG 97
NK D+ + + + + + + S +G
Sbjct: 358 NKVDVVEKINEEEIKNKLGTDRHMV---KISALKG 389
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF
family; HET: CME GDP; 1.80A {Mus musculus} SCOP:
c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Length = 186
Score = 27.6 bits (62), Expect = 1.1
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 4 GQE--RFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
GQ+ R W R Y++ G I + D ++ ++ ++++ + ++
Sbjct: 71 GQKSLRSYW--RNYFESTDGLIWVVDSADRQRMQDC---QRELQSLLVEERLAGATLLIF 125
Query: 62 ANKCDLPH 69
ANK DLP
Sbjct: 126 ANKQDLPG 133
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 27.5 bits (62), Expect = 1.2
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 16/95 (16%)
Query: 3 EGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLA 62
G ER + A + M D T ++ W + L PI ++
Sbjct: 72 IGIER----AWQEIEQADRVLFMVDGTTTDAVDPAEIWP---EFIARLPAKLPI--TVVR 122
Query: 63 NKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEG 97
NK D+ + ++++ H I S + G
Sbjct: 123 NKADITGETLGMSEVN----GHALI---RLSARTG 150
>1upt_A ARL1, ADP-ribosylation factor-like protein 1;
hydrolase/protein-binding, complex (GTPase/golgin),
golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP;
1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Length = 171
Score = 27.1 bits (61), Expect = 1.8
Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 11/70 (15%)
Query: 4 GQERFTWMTRVYYKDAHGCIIMFDLTNQNSF---KNTL-KWKKDVDLKCTLSDGSPIPCM 59
G R YY + I + D +++ K+ L ++ +L+ + + +
Sbjct: 60 GLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELR-----KAIL--V 112
Query: 60 LLANKCDLPH 69
+ ANK D+
Sbjct: 113 VFANKQDMEQ 122
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase,
nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Length = 189
Score = 27.2 bits (61), Expect = 1.8
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 11/70 (15%)
Query: 4 GQERFTWMTRVYYKDAHGCIIMFDLTNQNSF---KNTL-KWKKDVDLKCTLSDGSPIPCM 59
GQ R Y+ D I + D T+++ K+ L + +L+ S + +
Sbjct: 75 GQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELR-----KSLL--L 127
Query: 60 LLANKCDLPH 69
+ ANK DLP
Sbjct: 128 IFANKQDLPD 137
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein
transport, G protein, proline isomerization, circular
permutation; 2.20A {Saccharomyces cerevisiae}
Length = 193
Score = 27.0 bits (60), Expect = 1.8
Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 5/70 (7%)
Query: 4 GQERFTWMTRVYYKDAHGCI--IMFDL---TNQNSFKNTLKWKKDVDLKCTLSDGSPIPC 58
G + + Y K + ++F + + T ++ D+ S + I
Sbjct: 100 GHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDI 159
Query: 59 MLLANKCDLP 68
++ NK +L
Sbjct: 160 LIACNKSELF 169
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without
magnesium, ARF family, RAS superfamily, G-domain,
signaling protein; HET: MES GDP; 1.70A {Mus musculus}
SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Length = 181
Score = 26.8 bits (60), Expect = 2.0
Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 11/70 (15%)
Query: 4 GQERFTWMTRVYYKDAHGCIIMFDLTNQNSF---KNTL-KWKKDVDLKCTLSDGSPIPCM 59
GQ + R Y+++ I + D ++ F L + ++ L P+ +
Sbjct: 69 GQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLS-----CVPV--L 121
Query: 60 LLANKCDLPH 69
+ ANK DL
Sbjct: 122 IFANKQDLLT 131
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation
factor 1; structural genomics consortium, GTPase
activation; HET: GDP; 2.80A {Homo sapiens}
Length = 329
Score = 27.2 bits (60), Expect = 2.0
Identities = 17/72 (23%), Positives = 34/72 (47%), Gaps = 15/72 (20%)
Query: 4 GQE--RFTWMTRVYYKDAHGCIIMFDLTNQNSF---KNTL-KWKKDVDLKCTLSDGSPIP 57
GQ+ R W R Y+++ G I + D ++ + L + + +L+ + +
Sbjct: 218 GQDKIRPLW--RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELR-----DAVL- 269
Query: 58 CMLLANKCDLPH 69
++ ANK DLP+
Sbjct: 270 -LVFANKQDLPN 280
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich,
protein-peptide complex, apoptosis; 2.00A {Homo sapiens}
SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A
1d01_A 1d0a_A
Length = 168
Score = 26.9 bits (59), Expect = 2.2
Identities = 16/113 (14%), Positives = 39/113 (34%), Gaps = 6/113 (5%)
Query: 4 GQERFTWMTRVY----YKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCM 59
+ + R+Y + +F + + L+W + + L D + +
Sbjct: 51 SRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHV 110
Query: 60 LLANKCDLPHR--QVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDV 110
+ A + D+ Q +ND+ F ++ K + +D++ V
Sbjct: 111 IDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIV 163
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein
transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP:
c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Length = 198
Score = 26.9 bits (60), Expect = 2.2
Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 11/70 (15%)
Query: 4 GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSD----GSPIPCM 59
G + + + Y +G + + D + + + +L ++D PI +
Sbjct: 78 GHIQARRVWKNYLPAINGIVFLVDCADHERLLESKE-----ELDSLMTDETIANVPI--L 130
Query: 60 LLANKCDLPH 69
+L NK D P
Sbjct: 131 ILGNKIDRPE 140
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural
genomics; HET: GDP; 1.96A {Thermus thermophilus}
Length = 161
Score = 26.7 bits (60), Expect = 2.4
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 3/25 (12%)
Query: 57 PCMLLANKCDLPHRQVDINDIECFY 81
P +L+A K D P ++ + Y
Sbjct: 110 PVILVATKVDDPKHELYLGP---LY 131
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 26.7 bits (60), Expect = 2.6
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
Query: 57 PCMLLANKCDLPHRQVDINDIECFYK 82
P +L NK D + +I D FY
Sbjct: 113 PVVLAVNKLDNTEMRANIYD---FYS 135
>1nrj_B SR-beta, signal recognition particle receptor beta subunit;
transmembrane, endoplasmic reticulum, GTP-binding; HET:
GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Length = 218
Score = 26.6 bits (59), Expect = 2.8
Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 5/70 (7%)
Query: 4 GQERFTWMTRVYYKDA----HGCIIMFD-LTNQNSFKNTLKWKKDVDLKCTLSDGSPIPC 58
G + + Y K G I M D + T ++ D+ S + I
Sbjct: 64 GHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDI 123
Query: 59 MLLANKCDLP 68
++ NK +L
Sbjct: 124 LIACNKSELF 133
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling,
TRAF, adapter protein, cell surviVal; 2.30A {Homo
sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Length = 192
Score = 26.5 bits (58), Expect = 2.9
Identities = 16/113 (14%), Positives = 39/113 (34%), Gaps = 6/113 (5%)
Query: 4 GQERFTWMTRVY----YKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCM 59
+ + R+Y + +F + + L+W + + L D + +
Sbjct: 75 SRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHV 134
Query: 60 LLANKCDLPHR--QVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDV 110
+ A + D+ Q +ND+ F ++ K + +D++ V
Sbjct: 135 IDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIV 187
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 26.8 bits (59), Expect = 3.1
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 11/70 (15%)
Query: 4 GQE--RFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDG--SPIPCM 59
GQ+ R W R YY G I + D +++ + +L ++D +
Sbjct: 375 GQDKIRPLW--RHYYTGTQGLIFVVDCADRDRIDEARQ-----ELHRIINDREMRDAIIL 427
Query: 60 LLANKCDLPH 69
+ ANK DLP
Sbjct: 428 IFANKQDLPD 437
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol
metabolism, beta-alpha-alpha-beta-BETA-alpha structure,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.51.1.1
Length = 102
Score = 25.6 bits (56), Expect = 3.1
Identities = 6/22 (27%), Positives = 9/22 (40%), Gaps = 2/22 (9%)
Query: 119 NFPNNDDENMVKLSGPAPKVEK 140
F + E+ + L GP V
Sbjct: 62 EFT--EGEDKITLEGPTEDVSV 81
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 26.3 bits (59), Expect = 3.7
Identities = 6/25 (24%), Positives = 9/25 (36%), Gaps = 1/25 (4%)
Query: 57 PCMLLANKCDLPHRQVDINDIECFY 81
+L+ANK + E Y
Sbjct: 112 DTILVANKAENLREFEREVKPE-LY 135
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol
metabolism, beta-alpha-alpha-beta-BETA-alpha structure,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.51.1.1
Length = 95
Score = 25.5 bits (56), Expect = 4.2
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 119 NFPNNDD-ENMVKLSGPAPKVEK 140
+FP + V + GP+ VEK
Sbjct: 52 HFPVEGSGSDTVVIRGPSSDVEK 74
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 25.9 bits (57), Expect = 4.3
Identities = 8/67 (11%), Positives = 20/67 (29%), Gaps = 1/67 (1%)
Query: 4 GQERF-TWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLA 62
G E + + A + + D + L +++ + ++
Sbjct: 63 GHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIAC 122
Query: 63 NKCDLPH 69
NK D+
Sbjct: 123 NKQDIAM 129
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 25.5 bits (57), Expect = 6.1
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 54 SPIPCMLLANKCDLPHRQVDIND-IECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM 112
P +L NK D + D+ ++ + NF+ S + GL V+ + L
Sbjct: 115 GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHL- 173
Query: 113 RQEGLQNFP 121
E +FP
Sbjct: 174 -PEATHHFP 181
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium
tuberculosis}
Length = 406
Score = 25.6 bits (57), Expect = 6.2
Identities = 4/15 (26%), Positives = 8/15 (53%), Gaps = 1/15 (6%)
Query: 68 PHRQVDINDIEC-FY 81
P+R +DI + +
Sbjct: 207 PYRLLDIRETDADVV 221
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Length = 190
Score = 25.2 bits (56), Expect = 7.1
Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Query: 4 GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDG--SPIPCMLL 61
G + + + Y+ + +G + + D + F + +L + +P ++L
Sbjct: 76 GHIQARRLWKDYFPEVNGIVFLVDAADPERFDEA----RV-ELDALFNIAELKDVPFVIL 130
Query: 62 ANKCDLPH 69
NK D P+
Sbjct: 131 GNKIDAPN 138
>2k1h_A Uncharacterized protein Ser13; structural genomics, unknown
function, PSI-2, protein struct initiative; NMR
{Staphylococcus epidermidis}
Length = 94
Score = 24.3 bits (53), Expect = 8.5
Identities = 3/26 (11%), Positives = 8/26 (30%)
Query: 102 DSMKFLLDVLMRQEGLQNFPNNDDEN 127
++MK L + + +
Sbjct: 13 NTMKVSLSEPRQDNSFTTYTAAQEGQ 38
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 25.2 bits (56), Expect = 9.7
Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 56 IPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWT--ETSTKEGLMVNDSMKFLLDVL 111
I ++ K DL Q + I+ + +++ IG+ TS+K+ DS+ ++
Sbjct: 118 IQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQ----DSLADIIPHF 171
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 25.2 bits (56), Expect = 9.8
Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 11/60 (18%)
Query: 56 IPCMLLANKCDL--PHRQVDINDIECFYKEHNFIGWT--ETSTKEGLMVNDSMKFLLDVL 111
+ +++ NK DL + ++ Y++ G+ + S K G + + L+D L
Sbjct: 111 VEPVIVFNKIDLLNEEEKKELERWISIYRD---AGYDVLKVSAKTG----EGIDELVDYL 163
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.424
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,089,421
Number of extensions: 104091
Number of successful extensions: 473
Number of sequences better than 10.0: 1
Number of HSP's gapped: 340
Number of HSP's successfully gapped: 131
Length of query: 142
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 58
Effective length of database: 4,356,429
Effective search space: 252672882
Effective search space used: 252672882
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.7 bits)