RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10891
(142 letters)
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 65.7 bits (159), Expect = 7e-15
Identities = 28/112 (25%), Positives = 56/112 (50%)
Query: 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
T GQERF + +Y+ + C++ F + + SF+N WKK+ + + P ++
Sbjct: 61 DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVI 120
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM 112
L NK D+ RQV + + + +++ + ETS K+ V + + + ++
Sbjct: 121 LGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 172
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 63.7 bits (154), Expect = 3e-14
Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
T GQER+ +T YY+ A G ++++D+ +++N +W K++ S I ML
Sbjct: 59 DTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA----DSNIVIML 114
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
+ NK DL H + D + E N + + ETS + V ++ K +L + R
Sbjct: 115 VGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRI 168
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 62.5 bits (151), Expect = 9e-14
Identities = 35/113 (30%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ A G I+++D+T++ +F N +W K V+ +L+
Sbjct: 58 TAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHAN----DEAQLLLV 113
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
NK D+ R V + E KE I + E+S K VN+ L ++ +
Sbjct: 114 GNKSDMETRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAKLIQEK 165
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 62.2 bits (150), Expect = 2e-13
Identities = 42/136 (30%), Positives = 68/136 (50%), Gaps = 8/136 (5%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ +HG II++D+T+Q SF W +++D T S + +L+
Sbjct: 62 TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYAT----STVLKLLV 117
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFP 121
NKCDL ++V D+ + + N + + ETS + V D+ + + QN
Sbjct: 118 GNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLN 177
Query: 122 N----NDDENMVKLSG 133
+D+ V L G
Sbjct: 178 ETTQKKEDKGNVNLKG 193
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 59.9 bits (144), Expect = 1e-12
Identities = 35/117 (29%), Positives = 63/117 (53%), Gaps = 4/117 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ A G I+++D+T +++F ++ T + I ML+
Sbjct: 63 TAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVK---LDNWLNELETYCTRNDIVNMLV 119
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQ 118
NK D +R+VD N+ F ++H+ + + E S K V + + L++ +++ GL
Sbjct: 120 GNKIDKENREVDRNEGLKFARKHS-MLFIEASAKTCDGVQCAFEELVEKIIQTPGLW 175
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 59.1 bits (142), Expect = 2e-12
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQER+ +T YY+ A G I+M+D+TN+ SF W + +L+
Sbjct: 61 TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW----DNAQVLLV 116
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
NKCD+ +V ++ +H + E S K+ + V + + L+DV+ +
Sbjct: 117 GNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 169
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 58.2 bits (140), Expect = 4e-12
Identities = 31/114 (27%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+ A G ++++D+TN+ SF N W ++++ + + + M+L
Sbjct: 62 TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS----ADVEKMIL 117
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115
NKCD+ ++ + I + ETS K + V ++ L + +
Sbjct: 118 GNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 171
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 57.9 bits (139), Expect = 5e-12
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T+ YY+ A+ I+ +D+T + SF+ +W ++++ + + + +L+
Sbjct: 61 TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS----NKVITVLV 116
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
NK DL R+ + E + + ETS KE V L L+ +
Sbjct: 117 GNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISE 169
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 56.8 bits (136), Expect = 2e-11
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
Query: 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
T GQERF +T +++DA G ++MFDLT+Q SF N W + +L
Sbjct: 70 DTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA---YCENPDIVL 126
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
+ NK DLP ++ + I + ETS G V +++ LLD++M++
Sbjct: 127 IGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKR 180
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 56.0 bits (134), Expect = 2e-11
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 4/107 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +TR YY+ A G ++++D+T ++++ + W D +L+
Sbjct: 60 TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTN----PNTVIILI 115
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
NK DL ++ + + E N + + E S K G V D+
Sbjct: 116 GNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAA 162
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 55.1 bits (131), Expect = 7e-11
Identities = 38/126 (30%), Positives = 63/126 (50%)
Query: 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
T GQERF + +Y+ A C+++FD+T N+FK W+ + ++ + D P ++
Sbjct: 57 DTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVV 116
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNF 120
L NK DL +RQV + + N I + ETS KE + V + + + ++QE
Sbjct: 117 LGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVEL 176
Query: 121 PNNDDE 126
N E
Sbjct: 177 YNEFPE 182
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 54.6 bits (130), Expect = 8e-11
Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
T GQERF + Y +D+ ++++D+TN NSF+ T KW DV + GS + ML
Sbjct: 55 DTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTER----GSDVIIML 110
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFL 107
+ NK DL ++ + + + + ETS K G V + +
Sbjct: 111 VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV 157
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 54.1 bits (129), Expect = 1e-10
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
T GQE F +TR YY+ A G ++++D+T + +F + W +D S + ML
Sbjct: 58 DTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS----SSNMVIML 113
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR--QEGL 117
+ NK DL R+ + + + + + ETS K V ++ + R Q+GL
Sbjct: 114 IGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGL 172
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 53.7 bits (128), Expect = 2e-10
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +T YY+DAH ++++D+TN+ SF N W ++ +L
Sbjct: 63 TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYA---QHDVALMLLG 119
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113
R V D E KE+ + + ETS K GL V+ + + L R
Sbjct: 120 NKVDSAHERVVKREDGEKLAKEYG-LPFMETSAKTGLNVDLAFTAIAKELKR 170
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 51.5 bits (122), Expect = 1e-09
Identities = 27/107 (25%), Positives = 47/107 (43%), Gaps = 3/107 (2%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G E+F M +Y K+ G I+++ L NQ SF++ + + +P +L+
Sbjct: 58 TAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEK---VPVILV 114
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
NK DL + + E + ETS K MV++ ++
Sbjct: 115 GNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 51.5 bits (122), Expect = 1e-09
Identities = 28/112 (25%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
T GQERF + +YY+D++G I+++D+T+++SF+ W K++ + I +
Sbjct: 58 DTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLG----NEICLCI 113
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLM 112
+ NK DL + Y E TS K+ + + L ++
Sbjct: 114 VGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 165
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 50.7 bits (120), Expect = 2e-09
Identities = 23/114 (20%), Positives = 48/114 (42%), Gaps = 3/114 (2%)
Query: 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
T GQE + + Y++ G + +F +T SF T +++ + + +P +L
Sbjct: 58 DTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN---VPFLL 114
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
+ NK DL ++ + + + + ETS K V+ L+ + +
Sbjct: 115 VGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 50.5 bits (119), Expect = 3e-09
Identities = 28/116 (24%), Positives = 57/116 (49%), Gaps = 2/116 (1%)
Query: 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
T GQERF + +Y+ A C++++D+TN +SF+N W+ + + ++ P ++
Sbjct: 58 DTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVI 117
Query: 61 LANKCDLPHRQVDINDI--ECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
L NK D + +++ + K I TS K + V+ + + + ++Q
Sbjct: 118 LGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ 173
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 50.3 bits (119), Expect = 4e-09
Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 4/113 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQERF +TR YY+ A G ++++D+T++ ++ W D + I +L
Sbjct: 61 TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLA----SQNIVIILC 116
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
NK DL + + + N + + ETS G V ++ ++ +
Sbjct: 117 GNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNK 169
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 50.0 bits (118), Expect = 5e-09
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T GQER+ + +YY+ A I+++D+TN+ SF W K++ + I L
Sbjct: 62 TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA----SPNIVIALS 117
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113
NK DL +++ Y + N + + ETS K + VN+ + L +
Sbjct: 118 GNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 49.3 bits (116), Expect = 9e-09
Identities = 26/115 (22%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
Query: 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
T GQE F M Y + HG +++F + ++ SF K + + D P +L
Sbjct: 60 DTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQI---LRVKDRDDFPVVL 116
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115
+ NK DL ++ + + + + E S K L V+++ + L+ + + +
Sbjct: 117 VGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ 171
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 47.7 bits (112), Expect = 3e-08
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 1/108 (0%)
Query: 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
T GQERF + +YY++A ++++D+T SF W K++ + + +
Sbjct: 58 DTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNK 117
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
+ + R+V + E +E + + ETS K G VND +
Sbjct: 118 IDMLQEGGERKVAREEGEKLAEEKG-LLFFETSAKTGENVNDVFLGIG 164
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 45.7 bits (107), Expect = 2e-07
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
T GQE ++ M Y + G + +F + N SF++ ++++ + + D +P +L
Sbjct: 57 DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVL 113
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113
+ NKCDL R V+ + + + I + ETS K V D+ L+ + +
Sbjct: 114 VGNKCDLAARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVREIRQ 165
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 44.6 bits (104), Expect = 4e-07
Identities = 26/112 (23%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 4 GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
GQE F M Y + G +++F +T++ SF+ K+++ + D P +L+ N
Sbjct: 62 GQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVK---DRDEFPMILIGN 118
Query: 64 KCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115
K DL H++ + + + E S K + V+ + L+ V+ + +
Sbjct: 119 KADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRKFQ 170
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 43.1 bits (100), Expect = 2e-06
Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
T G E+FT M +Y K+ G +++ +T Q++F + ++ + + D +P +L+
Sbjct: 58 TAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQI---LRVKDTEDVPMILV 114
Query: 62 ANKCDLPHRQV-DINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113
NKCDL +V + ++ + E+S K + VN+ L+ + R
Sbjct: 115 GNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 42.7 bits (99), Expect = 2e-06
Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 2/114 (1%)
Query: 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
T G +F M R+ H I+++ +T++ S + + + D IP ML
Sbjct: 56 DTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQIC--EIKGDVESIPIML 113
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQ 114
+ NKCD + + + ETS K V + + LL++ R+
Sbjct: 114 VGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRR 167
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 41.9 bits (97), Expect = 3e-06
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
Query: 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
T G ERF + +YY+ + II++D+T + +F W +++ I +
Sbjct: 59 DTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHG----PPSIVVAI 114
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
NKCDL + + Y + + ETS K + +N+
Sbjct: 115 AGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININE 156
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 41.5 bits (96), Expect = 7e-06
Identities = 17/111 (15%), Positives = 35/111 (31%), Gaps = 17/111 (15%)
Query: 5 QERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANK 64
QE + + + Y +I F + N SF+N + + +P +L+ +
Sbjct: 67 QEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA----PNVPFLLIGTQ 122
Query: 65 CDLP-------------HRQVDINDIECFYKEHNFIGWTETSTKEGLMVND 102
DL + + + + KE + E S +
Sbjct: 123 IDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKT 173
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 41.1 bits (95), Expect = 8e-06
Identities = 21/115 (18%), Positives = 34/115 (29%), Gaps = 17/115 (14%)
Query: 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y +I F L + SF+N P +L
Sbjct: 59 DTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHH----CPNTPIIL 114
Query: 61 LANKCDLPHRQVDINDI-------------ECFYKEHNFIGWTETSTKEGLMVND 102
+ K DL + I + KE + + E S +
Sbjct: 115 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKT 169
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 41.2 bits (95), Expect = 8e-06
Identities = 32/115 (27%), Positives = 56/115 (48%), Gaps = 4/115 (3%)
Query: 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
T GQE F+ M Y + G +I++ +T++ SF++ ++ + + D P +L
Sbjct: 58 DTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK---DRESFPMIL 114
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEG-LMVNDSMKFLLDVLMRQ 114
+ANK DL H + D I + ETS K+ L V+ + L+ V+ +Q
Sbjct: 115 VANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 169
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 40.8 bits (94), Expect = 1e-05
Identities = 16/106 (15%), Positives = 32/106 (30%), Gaps = 17/106 (16%)
Query: 5 QERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANK 64
+ + + Y D+ +I FD++ + + LK K + +L+ K
Sbjct: 60 SPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF----CPNTKMLLVGCK 115
Query: 65 CDLPH-------------RQVDINDIECFYKEHNFIGWTETSTKEG 97
DL V + K+ + E S +
Sbjct: 116 SDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQS 161
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 40.3 bits (93), Expect = 1e-05
Identities = 17/114 (14%), Positives = 40/114 (35%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
GQ R YY D I + D T+++ K + + L D + +
Sbjct: 68 LGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANK 127
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115
++ ++ + +S +G + + + +L+DV+ ++
Sbjct: 128 QDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEEQ 181
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 39.9 bits (92), Expect = 2e-05
Identities = 18/110 (16%), Positives = 35/110 (31%), Gaps = 6/110 (5%)
Query: 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
GQ++ + R YY G I + D +++ + + + D ++
Sbjct: 62 DVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRD---AIILI 118
Query: 61 LANKCDLPHRQVDINDIECFYKE---HNFIGWTETSTKEGLMVNDSMKFL 107
ANK DLP E + G + + + +L
Sbjct: 119 FANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWL 168
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 39.3 bits (90), Expect = 3e-05
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
T GQE F +T+ YY+ A C+++F T++ SF+ W++ V + IP L
Sbjct: 57 DTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-----GDIPTAL 111
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMR 113
+ NK DL N+ + + + TS KE L V++ K+L + ++
Sbjct: 112 VQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 164
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 39.3 bits (90), Expect = 4e-05
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 7/118 (5%)
Query: 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
T GQE+F + YY A IIMFD+T++ ++KN W +D+ C IP +L
Sbjct: 58 DTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-----NIPIVL 112
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQ 118
NK D+ R+V I K++ + + + S K +L L+ L+
Sbjct: 113 CGNKVDIKDRKVKAKSIVFHRKKN--LQYYDISAKSNYNFEKPFLWLARKLIGDPNLE 168
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 39.2 bits (90), Expect = 4e-05
Identities = 17/128 (13%), Positives = 38/128 (29%), Gaps = 17/128 (13%)
Query: 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
T GQE + + + Y ++ F + + +SF+N + P +L
Sbjct: 57 DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC----PKTPFLL 112
Query: 61 LANKCDLPHRQVDIN-------------DIECFYKEHNFIGWTETSTKEGLMVNDSMKFL 107
+ + DL I E ++ + + E S + +
Sbjct: 113 VGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEA 172
Query: 108 LDVLMRQE 115
+ +
Sbjct: 173 ILAALEPP 180
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 38.8 bits (89), Expect = 6e-05
Identities = 13/122 (10%), Positives = 36/122 (29%)
Query: 4 GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLAN 63
+ + + A + + D + L +++ + ++ N
Sbjct: 57 HESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACN 116
Query: 64 KCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFPNN 123
K D+ + + KE N + T ++ L + + L ++ P
Sbjct: 117 KQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLK 176
Query: 124 DD 125
+
Sbjct: 177 VE 178
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 37.7 bits (86), Expect = 1e-04
Identities = 20/117 (17%), Positives = 42/117 (35%), Gaps = 6/117 (5%)
Query: 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
GQ+ R Y++ G I + D ++ ++ + + + ++ L+ ++
Sbjct: 52 DVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAG---ATLLI 108
Query: 61 LANKCDLP-HRQVDINDIECFYKEHNFIGWT--ETSTKEGLMVNDSMKFLLDVLMRQ 114
ANK DLP + W S G + + +LLD + +
Sbjct: 109 FANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 165
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 37.2 bits (85), Expect = 2e-04
Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 6/103 (5%)
Query: 10 WMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPH 69
R Y+++ I + D ++ F+ T + ++ + LS +P ++ ANK DL
Sbjct: 75 PYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSC---VPVLIFANKQDLLT 131
Query: 70 RQVDINDIECF---YKEHNFIGWTETSTKEGLMVNDSMKFLLD 109
E S G V D M ++
Sbjct: 132 AAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCK 174
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 36.1 bits (82), Expect = 6e-04
Identities = 17/113 (15%), Positives = 37/113 (32%), Gaps = 2/113 (1%)
Query: 5 QERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDV-DLKCTLSDGSPIPCMLLAN 63
+E + A I +F L ++NSF+ + + L+ G + + +
Sbjct: 57 REEAGAPDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQD 116
Query: 64 K-CDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115
+ R V + + ET GL V+ + + ++
Sbjct: 117 RISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLR 169
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 35.0 bits (79), Expect = 0.001
Identities = 14/110 (12%), Positives = 37/110 (33%)
Query: 2 TEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLL 61
GQ++ + R Y+++ G I + D ++ + + + L D +
Sbjct: 51 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANK 110
Query: 62 ANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111
+ + + + + H T G + + + +L + L
Sbjct: 111 QDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 34.2 bits (77), Expect = 0.002
Identities = 19/126 (15%), Positives = 41/126 (32%), Gaps = 17/126 (13%)
Query: 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
T G E + + + Y D ++ F + + +S +N + +P +L
Sbjct: 56 DTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHF----CPNVPIIL 111
Query: 61 LANKCDLPHRQVDINDIEC-------------FYKEHNFIGWTETSTKEGLMVNDSMKFL 107
+ NK DL + + ++ G+ E S K V + +
Sbjct: 112 VGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMA 171
Query: 108 LDVLMR 113
++
Sbjct: 172 TRAALQ 177
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 33.4 bits (75), Expect = 0.004
Identities = 20/108 (18%), Positives = 40/108 (37%), Gaps = 4/108 (3%)
Query: 8 FTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDL 67
T + + G ++++D+T++ SF+ L K +D + + I NK DL
Sbjct: 62 DTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILV---GNKADL 118
Query: 68 PHRQVDINDIECFYKEHNFIGWTETSTKEG-LMVNDSMKFLLDVLMRQ 114
H + + + E S G + + L + R+
Sbjct: 119 DHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRR 166
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 33.1 bits (74), Expect = 0.005
Identities = 16/118 (13%), Positives = 38/118 (32%), Gaps = 15/118 (12%)
Query: 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
G + + + Y+ + +G + + D + F + L D +P ++
Sbjct: 50 DLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKD---VPFVI 106
Query: 61 LANKCDLPHRQVDINDI-----------ECFYKEHNFIGWTETSTKEGLMVNDSMKFL 107
L NK D P+ V ++ + + S ++ ++L
Sbjct: 107 LGNKIDAPN-AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWL 163
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 32.7 bits (73), Expect = 0.007
Identities = 11/123 (8%), Positives = 38/123 (30%), Gaps = 20/123 (16%)
Query: 5 QERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANK 64
+ + + Y +G + + D + + + + T+++ +P ++L NK
Sbjct: 67 HIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIAN---VPILILGNK 123
Query: 65 CDLPHRQVDINDIECFYKEHNF----------------IGWTETSTKEGLMVNDSMKFLL 108
D P + + + + + S + + +++
Sbjct: 124 IDRPE-AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMA 182
Query: 109 DVL 111
+
Sbjct: 183 QYI 185
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 32.4 bits (72), Expect = 0.009
Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 3/108 (2%)
Query: 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
T GQ+ ++ + Y D +G I+++ + S K+ K + IP ML
Sbjct: 58 DTAGQDEYSIFPQTYSIDINGYILVY---SVTSIKSFEVIKVIHGKLLDMVGKVQIPIML 114
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
+ NK DL +V + E + E+S KE D + ++
Sbjct: 115 VGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRII 162
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 31.7 bits (70), Expect = 0.020
Identities = 12/108 (11%), Positives = 28/108 (25%)
Query: 8 FTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDL 67
++ + + + K + IP +L+ NK DL
Sbjct: 64 KGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL 123
Query: 68 PHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115
+ + ETS V + + ++ + +
Sbjct: 124 VRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRR 171
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 30.8 bits (68), Expect = 0.030
Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 6/107 (5%)
Query: 5 QERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANK 64
Q RF M Y + + M D +Q + + ++ K L IP ++L NK
Sbjct: 57 QPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQG---IPVLVLGNK 113
Query: 65 CDLP---HRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLL 108
DLP + I + + I S KE ++ ++++L+
Sbjct: 114 RDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLI 160
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 29.2 bits (64), Expect = 0.12
Identities = 17/111 (15%), Positives = 37/111 (33%), Gaps = 8/111 (7%)
Query: 5 QERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANK 64
QE YY + I++ D T++ T + + D ++ ANK
Sbjct: 69 QESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHE---DLRKAGLLIFANK 125
Query: 65 CDLPH----RQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVL 111
D+ ++ K+H + G + +++++ L
Sbjct: 126 QDVKECMTVAEISQFLKLTSIKDHQWH-IQACCALTGEGLCQGLEWMMSRL 175
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 28.9 bits (63), Expect = 0.15
Identities = 17/115 (14%), Positives = 37/115 (32%), Gaps = 3/115 (2%)
Query: 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
Q+ W+ +I++ +T++ SF+ + +P +L
Sbjct: 54 DIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEK---ASELRVQLRRARQTDDVPIIL 110
Query: 61 LANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115
+ NK DL + D + ETS V + ++ + +
Sbjct: 111 VGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRR 165
>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis
[TaxId: 1423]}
Length = 273
Score = 29.0 bits (64), Expect = 0.19
Identities = 10/43 (23%), Positives = 15/43 (34%)
Query: 57 PCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLM 99
P ++L NK D V E F + + +GL
Sbjct: 44 PRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGLN 86
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 28.5 bits (62), Expect = 0.19
Identities = 17/118 (14%), Positives = 41/118 (34%), Gaps = 6/118 (5%)
Query: 1 MTEGQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCML 60
G R YY + I + D +++ + + ++
Sbjct: 55 DLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVA---MLEEEELRKAILVV 111
Query: 61 LANKCDLPHRQVD---INDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDVLMRQE 115
ANK D+ N + + +TS +G ++++M++L++ L ++
Sbjct: 112 FANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKSRQ 169
>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2
(TRAF2) {Human (Homo sapiens) [TaxId: 9606]}
Length = 152
Score = 27.4 bits (60), Expect = 0.39
Identities = 16/113 (14%), Positives = 39/113 (34%), Gaps = 6/113 (5%)
Query: 4 GQERFTWMTRVYYK----DAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCM 59
+ + R+Y + +F + + L+W + + L D + +
Sbjct: 35 SRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTLMLLDQNNREHV 94
Query: 60 LLANKCDLPHR--QVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFLLDV 110
+ A + D+ Q +ND+ F ++ K + +D++ V
Sbjct: 95 IDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAKNSYVRDDAIFIKAIV 147
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 25.4 bits (55), Expect = 2.9
Identities = 10/52 (19%), Positives = 20/52 (38%)
Query: 56 IPCMLLANKCDLPHRQVDINDIECFYKEHNFIGWTETSTKEGLMVNDSMKFL 107
+ +++ NK DL E +TS K G+ + + ++L
Sbjct: 42 LETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYL 93
>d2nn6e1 d.14.1.4 (E:5-191) Exosome complex exonuclease RRP42 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 187
Score = 25.1 bits (54), Expect = 3.2
Identities = 7/44 (15%), Positives = 11/44 (25%)
Query: 19 AHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLA 62
DL W VD+ G+ + +A
Sbjct: 108 IFNNKSSVDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIA 151
>d1aqca_ b.55.1.2 (A:) X11 {Human (Homo sapiens) [TaxId: 9606]}
Length = 166
Score = 25.1 bits (54), Expect = 3.4
Identities = 10/55 (18%), Positives = 22/55 (40%)
Query: 85 NFIGWTETSTKEGLMVNDSMKFLLDVLMRQEGLQNFPNNDDENMVKLSGPAPKVE 139
N++G T+ + + N M + + R + Q + + S P +V+
Sbjct: 13 NYLGSTQLLSDKTPSKNVRMMQAQEAVSRIKMAQKLAKSRKKAPEGESQPMTEVD 67
>d2op5a1 d.58.4.22 (A:4-115) Hypothetical protein GOS_7213774
{environmental samples}
Length = 112
Score = 23.7 bits (51), Expect = 7.2
Identities = 7/40 (17%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 4 GQERFTWMTRVYYKDAHGCIIMFDLTNQNSFKNTLK-WKK 42
G R +++V+ K+ H ++F+ ++ ++ + K
Sbjct: 43 GLIRHV-ISKVWNKEQHRISMVFEYDSKEGYQKCQEIIDK 81
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 23.8 bits (50), Expect = 9.7
Identities = 12/112 (10%), Positives = 33/112 (29%), Gaps = 1/112 (0%)
Query: 11 MTRVYYKDAHGCIIMFDLTNQNSFKNTLKWKKDVDLKCTLSDGSPIPCMLLANKCDLPHR 70
+ + + ++ + + ++ P ++ NK DL
Sbjct: 69 LGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE 128
Query: 71 QVDINDIECFYKEHNFIGWTETSTKEGLM-VNDSMKFLLDVLMRQEGLQNFP 121
+ + +E + T GL + +++ L+ E + P
Sbjct: 129 EAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRSTPPPEMPKPVP 180
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.424
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 528,878
Number of extensions: 22138
Number of successful extensions: 154
Number of sequences better than 10.0: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 63
Length of query: 142
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 65
Effective length of database: 1,350,386
Effective search space: 87775090
Effective search space used: 87775090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.9 bits)