BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10892
(135 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GG6|A Chain A, Crystal Structure Of The Nudix Domain Of Human Nudt18
Length = 156
Score = 90.1 bits (222), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 57/73 (78%)
Query: 60 RLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEET 119
RL+K V Y+V+AV ++ ++ VL++QEAK C G+WYLPAG++E GET+ EA++REV EE
Sbjct: 14 RLRKNVCYVVLAVFLSEQDEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEA 73
Query: 120 GLEMAPTTLLAVE 132
GL P TLL+VE
Sbjct: 74 GLHCEPETLLSVE 86
>pdb|3GRN|A Chain A, Crystal Structure Of Mutt Protein From Methanosarcina
Mazei Go1
pdb|3GRN|B Chain B, Crystal Structure Of Mutt Protein From Methanosarcina
Mazei Go1
Length = 153
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 61 LKKTVTYIVMAVIINSKNAVLMMQEAK-SICN-GAWYLPAGKVEEGETLEEAVKREVLEE 118
L+K V A+I N K L+++ ++ S N G W LP GKV E+L+E V REV EE
Sbjct: 3 LEKPYIISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEE 62
Query: 119 TGLEMAP 125
TG+ M P
Sbjct: 63 TGITMVP 69
>pdb|1SJY|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 From
Deinococcus Radiodurans
pdb|1SOI|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 In Complex
With Sm+3
pdb|1SU2|A Chain A, Crystal Structure Of The Nudix Hydrolase Dr1025 In Complex
With Atp
pdb|1SU2|B Chain B, Crystal Structure Of The Nudix Hydrolase Dr1025 In Complex
With Atp
pdb|1SZ3|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 In Complexed
With Gnp And Mg+2
pdb|1SZ3|B Chain B, Crystal Structure Of Nudix Hydrolase Dr1025 In Complexed
With Gnp And Mg+2
Length = 159
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 72 VIINSKNAVLMMQEAKSICN-----GAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPT 126
V++N + +L++QE K I G W++P+G VE+GE ++A RE EETGL + P
Sbjct: 19 VLLNERGDILLVQE-KGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVRPV 77
Query: 127 TLLAVETAR 135
L R
Sbjct: 78 KFLGAYLGR 86
>pdb|3HHJ|A Chain A, Crystal Structure Of Mutator Mutt From Bartonella Henselae
pdb|3HHJ|B Chain B, Crystal Structure Of Mutator Mutt From Bartonella Henselae
Length = 158
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 61 LKKTVTYIVMAVIINSKNAVLMMQ--EAKSICNGAWYLPAGKVEEGETLEEAVKREVLEE 118
+K ++ +V +++ N VL+ Q E KS+ G W P GKVE+GET E ++ RE+ EE
Sbjct: 24 IKSSLLIVVACALLDQDNRVLLTQRPEGKSLA-GLWEFPGGKVEQGETPEASLIRELEEE 82
Query: 119 TGLEMAPTTLLAVETA 134
G+ + L + A
Sbjct: 83 LGVHVQADNLFPLTFA 98
>pdb|3SMD|A Chain A, Crystal Structure Of A MutNUDIX FAMILY PROTEIN FROM
BACILLUS Thuringiensis
Length = 153
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 69 VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEM 123
V AVI N + +L W LPAG +E GET EEAV REV EETGL++
Sbjct: 24 VAAVIKNEQGELLFQYPGGEY----WSLPAGAIEPGETPEEAVIREVWEETGLKV 74
>pdb|2GT4|A Chain A, Crystal Structure Of The Y103f Mutant Of The Gdp-Mannose
Mannosyl Hydrolase In Complex With Gdp-Mannose And Mg+2
pdb|2GT4|B Chain B, Crystal Structure Of The Y103f Mutant Of The Gdp-Mannose
Mannosyl Hydrolase In Complex With Gdp-Mannose And Mg+2
pdb|2GT4|C Chain C, Crystal Structure Of The Y103f Mutant Of The Gdp-Mannose
Mannosyl Hydrolase In Complex With Gdp-Mannose And Mg+2
Length = 160
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 55 ESFVPRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKRE 114
E F ++ T + ++ NS+ L+ + G W++P G+V++ ETLE A +R
Sbjct: 7 EDFATVVRSTPLVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERL 66
Query: 115 VLEETGLEMAPT 126
+ E GL + T
Sbjct: 67 TMAELGLRLPIT 78
>pdb|1RYA|A Chain A, Crystal Structure Of The E. Coli Gdp-Mannose Mannosyl
Hydrolase In Complex With Gdp And Mg
pdb|1RYA|B Chain B, Crystal Structure Of The E. Coli Gdp-Mannose Mannosyl
Hydrolase In Complex With Gdp And Mg
pdb|2GT2|A Chain A, Structure Of The E. Coli Gdp-Mannose Mannosyl Hydrolase
pdb|2GT2|B Chain B, Structure Of The E. Coli Gdp-Mannose Mannosyl Hydrolase
pdb|2GT2|C Chain C, Structure Of The E. Coli Gdp-Mannose Mannosyl Hydrolase
pdb|2GT2|D Chain D, Structure Of The E. Coli Gdp-Mannose Mannosyl Hydrolase
Length = 160
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 55 ESFVPRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKRE 114
E F ++ T + ++ NS+ L+ + G W++P G+V++ ETLE A +R
Sbjct: 7 EDFATVVRSTPLVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERL 66
Query: 115 VLEETGLEMAPT 126
+ E GL + T
Sbjct: 67 TMAELGLRLPIT 78
>pdb|2I8T|A Chain A, Gdp-Mannose Mannosyl Hydrolase-Calcium-Gdp-Mannose Complex
pdb|2I8T|B Chain B, Gdp-Mannose Mannosyl Hydrolase-Calcium-Gdp-Mannose Complex
pdb|2I8U|A Chain A, Gdp-Mannose Mannosyl Hydrolase-Calcium-Gdp Product Complex
pdb|2I8U|B Chain B, Gdp-Mannose Mannosyl Hydrolase-Calcium-Gdp Product Complex
Length = 167
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 55 ESFVPRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKRE 114
E F ++ T + ++ NS+ L+ + G W++P G+V++ ETLE A +R
Sbjct: 7 EDFATVVRSTPLVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERL 66
Query: 115 VLEETGLEMAPT 126
+ E GL + T
Sbjct: 67 TMAELGLRLPIT 78
>pdb|2AZW|A Chain A, Crystal Structure Of The Mutt/nudix Family Protein From
Enterococcus Faecalis
Length = 148
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 9/69 (13%)
Query: 60 RLKKTVTYIVM--AVIINSK---NAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKRE 114
+ ++T+TY A II SK N ++++Q NGA++LP G++E ET EEA+ RE
Sbjct: 8 KREETLTYQTRYAAYIIVSKPENNTMVLVQAP----NGAYFLPGGEIEGTETKEEAIHRE 63
Query: 115 VLEETGLEM 123
VLEE G+ +
Sbjct: 64 VLEELGISV 72
>pdb|1VC8|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1-Ap6a Complex
pdb|1VC8|B Chain B, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1-Ap6a Complex
pdb|1VCD|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1
pdb|1VCD|B Chain B, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1
Length = 126
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 71 AVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGL 121
V+ N+K VL++++ G W P G E GE+LEEA REV EETG+
Sbjct: 7 GVVFNAKREVLLLRDRM----GFWVFPKGHPEPGESLEEAAVREVWEETGV 53
>pdb|3FK9|A Chain A, Crystal Structure Of Mmutator Mutt Protein From Bacillus
Halodurans
pdb|3FK9|B Chain B, Crystal Structure Of Mmutator Mutt Protein From Bacillus
Halodurans
Length = 188
Score = 43.5 bits (101), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 69 VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGL 121
V I+ + VL++Q+ + G W P GK+E GE++ E VKRE EETG+
Sbjct: 6 VTNCIVVDHDQVLLLQKPR---RGWWVAPGGKMEAGESILETVKREYWEETGI 55
>pdb|1VC9|A Chain A, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase
E50q Mutant- Mg2+-atp Complex
pdb|1VC9|B Chain B, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase
E50q Mutant- Mg2+-atp Complex
Length = 126
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 71 AVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGL 121
V+ N+K VL++++ G W P G E GE+LEEA REV E+TG+
Sbjct: 7 GVVFNAKREVLLLRDRM----GFWVFPKGHPEPGESLEEAAVREVWEQTGV 53
>pdb|3R03|A Chain A, The Crystal Structure Of Nudix Hydrolase From
Rhodospirillum Rubrum
pdb|3R03|B Chain B, The Crystal Structure Of Nudix Hydrolase From
Rhodospirillum Rubrum
Length = 144
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 61 LKKTVTYIVMAVIINSKNAVLMMQE--AKSICNGAWYLPAGKVEEGETLEEAVKREVLEE 118
L + + A +I+ VL+ Q KS+ G W P GK+E GET E A+ RE+ EE
Sbjct: 3 LGLPILLVTAAALIDPDGRVLLAQRPPGKSLA-GLWEFPGGKLEPGETPEAALVRELAEE 61
Query: 119 TGLE 122
G++
Sbjct: 62 LGVD 65
>pdb|3Q93|A Chain A, Crystal Structure Of Human 8-Oxo-Dgtpase (Mth1)
pdb|3Q93|B Chain B, Crystal Structure Of Human 8-Oxo-Dgtpase (Mth1)
Length = 176
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 72 VIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGL 121
V++ VL+ + + G W GKV+EGET+E+ +RE+ EE+GL
Sbjct: 30 VLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGL 79
>pdb|3CNG|A Chain A, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|B Chain B, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|C Chain C, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
pdb|3CNG|D Chain D, Crystal Structure Of Nudix Hydrolase From Nitrosomonas
Europaea
Length = 189
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 48 PARGVIPESFVPRLKKTVTY----IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEE 103
P +P P+ T+ Y +++ I +N VL+ + A + G W LPAG E
Sbjct: 18 PEGDTLPRYICPKCH-TIHYQNPKVIVGCIPEWENKVLLCKRAIAPYRGKWTLPAGFXEN 76
Query: 104 GETLEEAVKREVLEETGLEMAPTTLLAV 131
ETL + RE LEE + L AV
Sbjct: 77 NETLVQGAARETLEEANARVEIRELYAV 104
>pdb|1IRY|A Chain A, Solution Structure Of The Hmth1, A Nucleotide Pool
Sanitization Enzyme
pdb|3ZR0|A Chain A, Crystal Structure Of Human Mth1 In Complex With 8-Oxo-Dgmp
pdb|3ZR0|B Chain B, Crystal Structure Of Human Mth1 In Complex With 8-Oxo-Dgmp
pdb|3ZR1|A Chain A, Crystal Structure Of Human Mth1
pdb|3ZR1|B Chain B, Crystal Structure Of Human Mth1
Length = 156
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 72 VIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGL 121
V++ VL+ + + G W GKV+EGET+E+ +RE+ EE+GL
Sbjct: 10 VLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGL 59
>pdb|3EES|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph
pdb|3EES|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph
pdb|3EEU|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Holmium
pdb|3EEU|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Holmium
pdb|3EF5|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Dgtp
pdb|3EF5|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Dgtp
pdb|3FFU|A Chain A, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Gtp And Magnesium
pdb|3FFU|B Chain B, Structure Of The Rna Pyrophosphohydrolase Bdrpph In
Complex With Gtp And Magnesium
Length = 153
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 60 RLKKTVTYIVMAVIINSKNAVLMMQ--EAKSICNGAWYLPAGKVEEGETLEEAVKREVLE 117
+++K V+A + +L+ Q E S+ G W P GK+E GET EEA+ RE+ E
Sbjct: 15 KIRKGHWIPVVAGFLRKDGKILVGQRPENNSLA-GQWEFPGGKIENGETPEEALARELNE 73
Query: 118 ETGLE 122
E G+E
Sbjct: 74 ELGIE 78
>pdb|3DKU|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|B Chain B, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|C Chain C, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|D Chain D, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|E Chain E, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|F Chain F, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|G Chain G, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|H Chain H, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|B Chain B, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|C Chain C, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|D Chain D, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|E Chain E, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|F Chain F, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|G Chain G, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|H Chain H, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|I Chain I, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|J Chain J, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|K Chain K, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|L Chain L, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
Length = 153
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 67 YIVMAVIINSKNAVLMMQEAKSICNGA--WYLPAGKVEEGETLEEAVKREVLEETGLEMA 124
++ +A +++++ L+++E NG W PAG +E ETL EA RE+ EETG+
Sbjct: 5 HVTVACVVHAEGKFLVVEET---INGKALWNQPAGHLEADETLVEAAARELWEETGISAQ 61
Query: 125 PTTLL 129
P +
Sbjct: 62 PQHFI 66
>pdb|4DYW|A Chain A, Crystal Structure Of Mutt Nudix Hydrolase From
Burkholderia Pseudomallei
pdb|4DYW|B Chain B, Crystal Structure Of Mutt Nudix Hydrolase From
Burkholderia Pseudomallei
Length = 157
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 74 INSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV 131
I +L+++ ++ G W LP GKV+ E +E AV RE+ EE G+ + TLL V
Sbjct: 36 IVRDGRILLIKRKRAPEAGCWGLPGGKVDWLEPVERAVCREIEEELGIALERATLLCV 93
>pdb|2KDV|A Chain A, Solution Structure Of Rna Pyrophosphohydrolase Rpph From
Escherichia Coli
Length = 164
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 69 VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128
V VI N + V+ A+ +W P G + GE+ E+A+ RE+ EE GL +
Sbjct: 11 VGIVICNRQGQVMW---ARRFGQHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRI 67
Query: 129 LA 130
LA
Sbjct: 68 LA 69
>pdb|1VK6|A Chain A, Crystal Structure Of Nadh Pyrophosphatase (1790429) From
Escherichia Coli K12 At 2.20 A Resolution
Length = 269
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 55 ESFVPRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKRE 114
E + P++ + V I +++L+ Q + NG + AG VE GETLE+AV RE
Sbjct: 133 ERYYPQIAPCII-----VAIRRDDSILLAQHTRHR-NGVHTVLAGFVEVGETLEQAVARE 186
Query: 115 VLEETGLEM 123
V EE+G+++
Sbjct: 187 VXEESGIKV 195
>pdb|2GB5|A Chain A, Crystal Structure Of Nadh Pyrophosphatase (Ec 3.6.1.22)
(1790429) From Escherichia Coli K12 At 2.30 A Resolution
pdb|2GB5|B Chain B, Crystal Structure Of Nadh Pyrophosphatase (Ec 3.6.1.22)
(1790429) From Escherichia Coli K12 At 2.30 A Resolution
Length = 269
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 55 ESFVPRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKRE 114
E + P++ + V I +++L+ Q + NG + AG VE GETLE+AV RE
Sbjct: 133 ERYYPQIAPCII-----VAIRRDDSILLAQHTRHR-NGVHTVLAGFVEVGETLEQAVARE 186
Query: 115 VLEETGLEM 123
V EE+G+++
Sbjct: 187 VXEESGIKV 195
>pdb|3N77|A Chain A, Crystal Structure Of Idp01880, Putative Ntp
Pyrophosphohydrolase Of Salmonella Typhimurium Lt2
pdb|3N77|B Chain B, Crystal Structure Of Idp01880, Putative Ntp
Pyrophosphohydrolase Of Salmonella Typhimurium Lt2
Length = 144
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 68 IVMAVIINSKNAVLM-MQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEM 123
IV +I N +L M + + + G W L G VE GE +EEA++RE+ EE G ++
Sbjct: 9 IVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQL 65
>pdb|3OGA|A Chain A, 1.75 Angstrom Resolution Crystal Structure Of A Putative
Ntp Pyrophosphohydrolase (Yfao) From Salmonella
Typhimurium Lt2
pdb|3OGA|B Chain B, 1.75 Angstrom Resolution Crystal Structure Of A Putative
Ntp Pyrophosphohydrolase (Yfao) From Salmonella
Typhimurium Lt2
Length = 165
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 68 IVMAVIINSKNAVLM-MQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEM 123
IV +I N +L M + + + G W L G VE GE +EEA++RE+ EE G ++
Sbjct: 30 IVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQL 86
>pdb|2B0V|A Chain A, Nudix Hydrolase From Nitrosomonas Europaea
Length = 153
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 68 IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTT 127
+ +A +I + L+++E PAG +E GE++ +A REVLEETG P
Sbjct: 9 VTVAAVIEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEV 68
Query: 128 LLAV 131
L +
Sbjct: 69 LTGI 72
>pdb|3GWY|A Chain A, Crystal Structure Of Putative Ctp Pyrophosphohydrolase
From Bacteroides Fragilis
pdb|3GWY|B Chain B, Crystal Structure Of Putative Ctp Pyrophosphohydrolase
From Bacteroides Fragilis
Length = 140
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 69 VMAVIINSKNAVLMMQEAK---SICNGAWYLPAGKVEEGETLEEAVKREVLEE 118
V+A +I L +Q + S + + P GKVEEGE+L+EA++RE++EE
Sbjct: 8 VVAAVIRLGEKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEE 60
>pdb|3Q1P|A Chain A, Crystal Structure Of Cdp-Chase
pdb|3Q1P|B Chain B, Crystal Structure Of Cdp-Chase
Length = 205
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 69 VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128
+ AV+ +N L+ + KS +G W LP G + G T E +EV EETG E+ L
Sbjct: 71 IRAVVF--QNEKLLFVKEKS--DGKWALPGGWADVGYTPTEVAAKEVFEETGYEVDHFKL 126
Query: 129 LAV 131
LA+
Sbjct: 127 LAI 129
>pdb|3Q4I|A Chain A, Crystal Structure Of Cdp-Chase In Complex With Gd3+
pdb|3Q4I|B Chain B, Crystal Structure Of Cdp-Chase In Complex With Gd3+
Length = 205
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 69 VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128
+ AV+ +N L+ + KS +G W LP G + G T E +EV EETG E+ L
Sbjct: 71 IRAVVF--QNEKLLFVKEKS--DGKWALPGGWADVGYTPTEVAAKEVFEETGYEVDHFKL 126
Query: 129 LAV 131
LA+
Sbjct: 127 LAI 129
>pdb|3ID9|A Chain A, Crystal Structure Of A MuttNUDIX FAMILY PROTEIN FROM
Bacillus Thuringiensis
pdb|3ID9|B Chain B, Crystal Structure Of A MuttNUDIX FAMILY PROTEIN FROM
Bacillus Thuringiensis
Length = 171
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 38/63 (60%), Gaps = 3/63 (4%)
Query: 69 VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128
V ++I + +L+ Q+ + N W LP G+VE GETLEEA RE EETGLE+ L
Sbjct: 26 VTGILIEDEKVLLVKQK---VANRDWSLPGGRVENGETLEEAXIREXREETGLEVKIKKL 82
Query: 129 LAV 131
L V
Sbjct: 83 LYV 85
>pdb|2RRK|A Chain A, Solution Structure Of The E. Coli Orf135 Protein
Length = 140
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 69 VMAVIINSKNAVLMMQE-AKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLE 122
V+A II +L+ Q A+S G W GKVE E+ +A+ RE+ EE G+E
Sbjct: 11 VVAAIIERDGKILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGIE 65
>pdb|2KDW|A Chain A, Solution Structure Of Rpph Mutant E53a From Escherichia
Coli
Length = 164
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 72 VIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLA 130
VI N + V+ A+ +W P G + GE+ E+A+ R + EE GL +LA
Sbjct: 14 VICNRQGQVMW---ARRFGQHSWQFPQGGINPGESAEQAMYRALFEEVGLSRKDVRILA 69
>pdb|2QJT|B Chain B, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE COMPLEXED
With Amp And Mn Ion From Francisella Tularensis
pdb|2QJT|A Chain A, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE COMPLEXED
With Amp And Mn Ion From Francisella Tularensis
pdb|2R5W|B Chain B, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE FROM
Francisella Tularensis
pdb|2R5W|A Chain A, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE FROM
Francisella Tularensis
Length = 352
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 72 VIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128
VI+N + +LM+Q W LP G +E ET+ +A+ RE+ EET + + L
Sbjct: 215 VIVN--DHILMVQRKAHPGKDLWALPGGFLECDETIAQAIIRELFEETNINLTHEQL 269
>pdb|2YVM|A Chain A, Crystal Structure Of Ndx2 In Complex With Mg2+ From
Thermus Thermophilus Hb8
pdb|2YVN|A Chain A, Crystal Structure Of Ndx2 From Thermus Thermophilus Hb8
pdb|2YVO|A Chain A, Crystal Structure Of Ndx2 In Complex With Mg2+ And Amp
From Thermus Thermophilus Hb8
pdb|2YVP|A Chain A, Crystal Structure Of Ndx2 In Complex With Mg2+ And Ampcpr
From Thermus Thermophilus Hb8
Length = 182
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 73 IINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLE 122
+ A+L+ Q +PAGKV+EGET E A +RE+ EE G E
Sbjct: 49 VTERGTALLVRQYRHPTGKFLLEVPAGKVDEGETPEAAARRELREEVGAE 98
>pdb|2FML|A Chain A, Crystal Structure Of MuttNUDIX FAMILY PROTEIN FROM
ENTEROCOCCUS Faecalis
pdb|2FML|B Chain B, Crystal Structure Of MuttNUDIX FAMILY PROTEIN FROM
ENTEROCOCCUS Faecalis
Length = 273
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 80 VLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGL 121
VL++Q +W LP G V E+ E++V RE EETG+
Sbjct: 58 VLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGV 99
>pdb|1JRK|A Chain A, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1JRK|B Chain B, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1JRK|C Chain C, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1JRK|D Chain D, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum Reveals A Dimer With Intertwined Beta Sheets
pdb|1K26|A Chain A, Structure Of A Nudix Protein From Pyrobaculum Aerophilum
Solved By The Single Wavelength Anomolous Scattering
Method
pdb|1K26|B Chain B, Structure Of A Nudix Protein From Pyrobaculum Aerophilum
Solved By The Single Wavelength Anomolous Scattering
Method
pdb|1K2E|A Chain A, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum
pdb|1K2E|B Chain B, Crystal Structure Of A Nudix Protein From Pyrobaculum
Aerophilum
Length = 156
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 68 IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAP 125
IV + ++ VL+++ + G + P G VE ET EAVKRE EETG+ + P
Sbjct: 2 IVTSGVLVENGKVLLVKHKRL---GVYIYPGGHVEHNETPIEAVKREFEEETGIVVEP 56
>pdb|1PPX|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1PUN|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1PUQ|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1PUS|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1MUT|A Chain A, Nmr Study Of Mutt Enzyme, A Nucleoside Triphosphate
Pyrophosphohydrolase
pdb|1TUM|A Chain A, Mutt Pyrophosphohydrolase-Metal-Nucleotide-Metal Complex,
Nmr, 16 Structures
pdb|3A6S|A Chain A, Crystal Structure Of The Mutt Protein
pdb|3A6S|B Chain B, Crystal Structure Of The Mutt Protein
pdb|3A6T|A Chain A, Crystal Structure Of Mutt-8-Oxo-Dgmp Complex
pdb|3A6U|A Chain A, Crystal Structure Of Mutt-8-Oxo-Dgmp-Mn(Ii) Complex
pdb|3A6V|A Chain A, Crystal Structure Of The Mutt Protein In Mn(Ii) Bound Holo
Form
pdb|3A6V|B Chain B, Crystal Structure Of The Mutt Protein In Mn(Ii) Bound Holo
Form
Length = 129
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 68 IVMAVIINSKNAVLMMQEAKS--ICNGAWYLPAGKVEEGETLEEAVKREVLEETGL 121
I + +I N N + + + A + N P GK+E GET E+AV RE+ EE G+
Sbjct: 6 IAVGIIRNENNEIFITRRAADAHMANKL-EFPGGKIEMGETPEQAVVRELQEEVGI 60
>pdb|3I9X|A Chain A, Crystal Structure Of A Mutt/nudix Family Protein From
Listeria Innocua
Length = 187
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 9/67 (13%)
Query: 74 INSKNAVLMMQEAKSICN---------GAWYLPAGKVEEGETLEEAVKREVLEETGLEMA 124
+N K + ++ +S+ N G W +P G V+E E+ E+A +RE+ EET L
Sbjct: 40 LNGKPTLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAERELEEETSLTDI 99
Query: 125 PTTLLAV 131
P V
Sbjct: 100 PLIPFGV 106
>pdb|3H95|A Chain A, Crystal Structure Of The Nudix Domain Of Nudt6
Length = 199
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 68 IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTT 127
+ AV S +L++Q+ + N W P G E E + + REV EETG++ +
Sbjct: 29 VAGAVFDESTRKILVVQDRNKLKN-MWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRS 87
Query: 128 LLAV 131
+L++
Sbjct: 88 VLSI 91
>pdb|3F13|A Chain A, Crystal Structure Of Putative Nudix Hydrolase Family
Member From Chromobacterium Violaceum
pdb|3F13|B Chain B, Crystal Structure Of Putative Nudix Hydrolase Family
Member From Chromobacterium Violaceum
Length = 163
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 92 GAWYLPAGKVEEGETLEEAVKREVLEETGLEM 123
G + LP GK GE +A+ RE+ EETGL +
Sbjct: 37 GRYNLPGGKANRGELRSQALIREIREETGLRI 68
>pdb|2QJO|A Chain A, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE Pyrophosphatase (Nadm)
Complexed With Adprp And Nad From Synechocystis Sp.
pdb|2QJO|B Chain B, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE Pyrophosphatase (Nadm)
Complexed With Adprp And Nad From Synechocystis Sp.
pdb|2QJO|C Chain C, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE Pyrophosphatase (Nadm)
Complexed With Adprp And Nad From Synechocystis Sp
Length = 341
Score = 33.9 bits (76), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 66 TYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEM 123
T+I ++ VLM++ G LP G +++ ETL E + RE+ EET L++
Sbjct: 202 TFITTDAVVVQAGHVLMVRRQAKPGLGLIALPGGFIKQNETLVEGMLRELKEETRLKV 259
>pdb|2O1C|A Chain A, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O1C|B Chain B, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O1C|C Chain C, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O1C|D Chain D, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase
pdb|2O5W|A Chain A, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
pdb|2O5W|B Chain B, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
pdb|2O5W|C Chain C, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
pdb|2O5W|D Chain D, Structure Of The E. Coli Dihydroneopterin Triphosphate
Pyrophosphohydrolase In Complex With Sm+3 And
Pyrophosphate
Length = 150
Score = 33.5 bits (75), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 62 KKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGL 121
K+ V+ +V+ ++K VLM+Q W G VEEGET +A REV EE +
Sbjct: 7 KRPVSILVVIYAQDTKR-VLMLQRRDD--PDFWQSVTGSVEEGETAPQAAMREVKEEVTI 63
Query: 122 EMAPTTLLAVETAR 135
++ L ++ R
Sbjct: 64 DVVAEQLTLIDCQR 77
>pdb|3O8S|A Chain A, Crystal Structure Of An Adp-Ribose Pyrophosphatase
(Ssu98_1448) From Streptococcus Suis 89-1591 At 2.27 A
Resolution
Length = 206
Score = 33.5 bits (75), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 35/58 (60%), Gaps = 4/58 (6%)
Query: 74 INSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV 131
I ++ +L++QE +G W LP G + +++++ V +EV EE GL++ ++A+
Sbjct: 77 IFQEDKILLVQEN----DGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQRVVAI 130
>pdb|2B06|A Chain A, Crystal Structure Of The MuttNUDIX FAMILY PROTEIN FROM
STREPTOCOCCUS Pneumoniae
Length = 155
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%)
Query: 65 VTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMA 124
+T I + + ++ V+ + ++ + P G VE E E+V RE+ EETGL +
Sbjct: 9 LTNICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETGLTIQ 68
Query: 125 PTTLLAVET 133
L+ ++
Sbjct: 69 NPQLVGIKN 77
>pdb|1F3Y|A Chain A, Solution Structure Of The Nudix Enzyme Diadenosine
Tetraphosphate Hydrolase From Lupinus Angustifolius L.
pdb|1JKN|A Chain A, Solution Structure Of The Nudix Enzyme Diadenosine
Tetraphosphate Hydrolase From Lupinus Angustifolius
Complexed With Atp
Length = 165
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 93 AWYLPAGKVEEGETLEEAVKREVLEETGLEMA 124
AW +P G ++EGE A RE+ EETG+ A
Sbjct: 39 AWQMPQGGIDEGEDPRNAAIRELREETGVTSA 70
>pdb|2FB1|A Chain A, Crystal Structure Of Protein Bt0354 From Bacteroides
Thetaiotaomicron
pdb|2FB1|B Chain B, Crystal Structure Of Protein Bt0354 From Bacteroides
Thetaiotaomicron
pdb|2FB1|C Chain C, Crystal Structure Of Protein Bt0354 From Bacteroides
Thetaiotaomicron
pdb|2FB1|D Chain D, Crystal Structure Of Protein Bt0354 From Bacteroides
Thetaiotaomicron
Length = 226
Score = 32.7 bits (73), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 79 AVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLE 122
++L+++ G W L G V++ E++++A KR + E TGLE
Sbjct: 29 SLLLLKRNFEPAXGEWSLXGGFVQKDESVDDAAKRVLAELTGLE 72
>pdb|3FJY|A Chain A, Crystal Structure Of A Probable Mutt1 Protein From
Bifidobacterium Adolescentis
pdb|3FJY|B Chain B, Crystal Structure Of A Probable Mutt1 Protein From
Bifidobacterium Adolescentis
Length = 364
Score = 32.7 bits (73), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 94 WYLPAGKVEEGETLEEAVKREVLEETG 120
W P GK+E+ ET A RE+ EETG
Sbjct: 51 WSWPKGKLEQNETHRHAAVREIGEETG 77
>pdb|3I7U|A Chain A, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|B Chain B, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|C Chain C, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|D Chain D, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7V|A Chain A, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
pdb|3I7V|B Chain B, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
Length = 134
Score = 32.7 bits (73), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 94 WYLPAGKVEEGETLEEAVKREVLEETGLE 122
W P G +E GE EE REV EETG++
Sbjct: 27 WSFPKGNIEPGEKPEETAVREVWEETGVK 55
>pdb|1G0S|A Chain A, The Crystal Structure Of The E.Coli Adp-Ribose
Pyrophosphatase
pdb|1G0S|B Chain B, The Crystal Structure Of The E.Coli Adp-Ribose
Pyrophosphatase
pdb|1G9Q|A Chain A, Complex Structure Of The Adpr-Ase And Its Substrate Adp-
Ribose
pdb|1G9Q|B Chain B, Complex Structure Of The Adpr-Ase And Its Substrate Adp-
Ribose
pdb|1GA7|A Chain A, Crystal Structure Of The Adp-Ribose Pyrophosphatase In
Complex With Gd+3
pdb|1GA7|B Chain B, Crystal Structure Of The Adp-Ribose Pyrophosphatase In
Complex With Gd+3
pdb|1KHZ|A Chain A, Structure Of The Adpr-Ase In Complex With Ampcpr And Mg
pdb|1KHZ|B Chain B, Structure Of The Adpr-Ase In Complex With Ampcpr And Mg
Length = 209
Score = 32.7 bits (73), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 94 WYLP--AGKVEEGETLEEAVKREVLEETGL 121
W L AG +EEGE++E+ +RE +EE GL
Sbjct: 90 WLLEMVAGMIEEGESVEDVARREAIEEAGL 119
>pdb|3EXQ|A Chain A, Crystal Structure Of A Nudix Family Hydrolase From
Lactobacillus Brevis
Length = 161
Score = 32.7 bits (73), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 96 LPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128
P G VE GE A REV EETGL ++ T
Sbjct: 41 FPGGHVEVGEPCATAAIREVFEETGLRLSGVTF 73
>pdb|1VIQ|A Chain A, Crystal Structure Of Putative Adp Ribose Pyrophosphatase
pdb|1VIQ|B Chain B, Crystal Structure Of Putative Adp Ribose Pyrophosphatase
pdb|1VIQ|C Chain C, Crystal Structure Of Putative Adp Ribose Pyrophosphatase
Length = 220
Score = 32.3 bits (72), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 94 WYLP--AGKVEEGETLEEAVKREVLEETGL 121
W L AG +EEGE++E+ +RE +EE GL
Sbjct: 91 WLLEMVAGMIEEGESVEDVARREAIEEAGL 120
>pdb|1V8I|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase
pdb|1V8L|A Chain A, Structure Analysis Of The Adp-Ribose Pyrophosphatase
Complexed With Adp-Ribose
pdb|1V8M|A Chain A, Crystal Structure Analysis Of Adp-Ribose Pyrophosphatase
Complexed With Adp-Ribose And Gd
pdb|1V8N|A Chain A, Crystal Structure Analysis Of The Adp-ribose
Pyrophosphatase Complexed With Zn
pdb|1V8S|A Chain A, Crystal Structure Analusis Of The Adp-Ribose
Pyrophosphatase Complexed With Amp And Mg
pdb|1V8T|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Complexed With Ribose-5'-Phosphate And
Zn
pdb|1V8R|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Complexed With Adp-Ribose And Zn
Length = 170
Score = 32.0 bits (71), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 70 MAVIINSKNAVLMMQEAK-SICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128
+AVI + +L +++ + ++ +PAG +E GE EA +RE+ EETGL T L
Sbjct: 37 VAVIALREGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEETGLSGDLTYL 96
Query: 129 LA 130
+
Sbjct: 97 FS 98
>pdb|3GZ5|A Chain A, Crystal Structure Of Shewanella Oneidensis Nrtr
pdb|3GZ5|B Chain B, Crystal Structure Of Shewanella Oneidensis Nrtr
pdb|3GZ6|A Chain A, Crystal Structure Of Shewanella Oneidensis Nrtr Complexed
With A 27mer Dna
pdb|3GZ6|B Chain B, Crystal Structure Of Shewanella Oneidensis Nrtr Complexed
With A 27mer Dna
Length = 240
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 56 SFVPRLKKTVTYIVMAVII---NSKNAVLMMQEAKSICNGAWYLPAGKVEE--GETLEEA 110
++ P+ K V AV+ + + VL++Q + G W LP G ++E E+LE+
Sbjct: 12 NYDPKAFKAQLLTVDAVLFTYHDQQLKVLLVQRSNHPFLGLWGLPGGFIDETCDESLEQT 71
Query: 111 VKREVLEETGL 121
V R++ E+T +
Sbjct: 72 VLRKLAEKTAV 82
>pdb|3GZ8|A Chain A, Cocrystal Structure Of Nudix Domain Of Shewanella
Oneidensis Nrtr Complexed With Adp Ribose
pdb|3GZ8|B Chain B, Cocrystal Structure Of Nudix Domain Of Shewanella
Oneidensis Nrtr Complexed With Adp Ribose
pdb|3GZ8|C Chain C, Cocrystal Structure Of Nudix Domain Of Shewanella
Oneidensis Nrtr Complexed With Adp Ribose
pdb|3GZ8|D Chain D, Cocrystal Structure Of Nudix Domain Of Shewanella
Oneidensis Nrtr Complexed With Adp Ribose
Length = 162
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 56 SFVPRLKKTVTYIVMAVIINSKNA---VLMMQEAKSICNGAWYLPAGKVEE--GETLEEA 110
++ P+ K V AV+ + VL++Q + G W LP G ++E E+LE+
Sbjct: 12 NYDPKAFKAQLLTVDAVLFTYHDQQLKVLLVQRSNHPFLGLWGLPGGFIDETCDESLEQT 71
Query: 111 VKREVLEETGL 121
V R++ E+T +
Sbjct: 72 VLRKLAEKTAV 82
>pdb|1Q27|A Chain A, Nmr Solution Structure Of Dr0079: An Hypothetical Nudix
Protein From D. Radiodurans
pdb|2O5F|A Chain A, Crystal Structure Of Dr0079 From Deinococcus Radiodurans
At 1.9 Angstrom Resolution
pdb|2O5F|B Chain B, Crystal Structure Of Dr0079 From Deinococcus Radiodurans
At 1.9 Angstrom Resolution
Length = 171
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 59 PRLKKTVTYIVMAVIINSKNAVLMMQEA--KSICNGAWYLP-AGKVEEGETLEEAVKREV 115
P L+ +V A + NS+ + + + + KS+ A + G V+ GET EEA +RE
Sbjct: 27 PALRWERVRVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREA 86
Query: 116 LEETGLEM 123
EE +E+
Sbjct: 87 REELNVEI 94
>pdb|2QKM|B Chain B, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|D Chain D, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|F Chain F, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|H Chain H, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
Length = 266
Score = 31.2 bits (69), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 91 NGAWYLPAGKVEEGETLEEAVKREVLEETGLE 122
+ W P GK+++ E+ + REV EETG +
Sbjct: 120 SSGWGFPKGKIDKDESDVDCAIREVYEETGFD 151
>pdb|1Q33|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt9
pdb|1QVJ|A Chain A, Structure Of Nudt9 Complexed With Ribose-5-Phosphate
Length = 292
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 46 FAPARGVIPESFVPRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGE 105
+ P P + R K+ + + ++ K+ + + + C G W +P G V+ GE
Sbjct: 107 WGPNHAADP--IITRWKRDSSGNKIXHPVSGKHILQFVAIKRKDC-GEWAIPGGXVDPGE 163
Query: 106 TLEEAVKREVLEE 118
+ +KRE EE
Sbjct: 164 KISATLKREFGEE 176
>pdb|1V8V|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E86q Mutant, Complexed With
Adp-Ribose And Mg
pdb|1V8Y|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E86q Mutant, Complexed With
Adp-Ribose And Zn
Length = 170
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 70 MAVIINSKNAVLMMQEAK-SICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128
+AVI + +L +++ + ++ +PAG +E GE EA +RE+ E+TGL T L
Sbjct: 37 VAVIALREGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGLSGDLTYL 96
Query: 129 LA 130
+
Sbjct: 97 FS 98
>pdb|1V8U|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E82q Mutant With So4 And Mg
pdb|1V8W|A Chain A, Crystal Structure Analysis Of The Adp-Ribose
Pyrophosphatase Of E82q Mutant, Complexed With So4 And
Zn
Length = 170
Score = 31.2 bits (69), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 70 MAVIINSKNAVLMMQEAK-SICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128
+AVI + +L +++ + ++ +PAG +E GE EA +R++ EETGL T L
Sbjct: 37 VAVIALREGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRQLAEETGLSGDLTYL 96
Query: 129 LA 130
+
Sbjct: 97 FS 98
>pdb|2A6T|A Chain A, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p
pdb|2A6T|B Chain B, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p
Length = 271
Score = 31.2 bits (69), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 91 NGAWYLPAGKVEEGETLEEAVKREVLEETGLE 122
+ W P GK+++ E+ + REV EETG +
Sbjct: 125 SSGWGFPKGKIDKDESDVDCAIREVYEETGFD 156
>pdb|3ACA|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dadp
And Manganese
pdb|3ACA|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dadp
And Manganese
Length = 196
Score = 30.8 bits (68), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 56 SFVPRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREV 115
+ +P L++T+ Y + VL+ Q + PAG +++GET E A RE+
Sbjct: 51 AVIPVLQRTLHYECI---------VLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALREL 101
Query: 116 LEETG 120
EETG
Sbjct: 102 EEETG 106
>pdb|3AC9|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgdp
And Manganese
pdb|3AC9|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgdp
And Manganese
pdb|3L85|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgmp
pdb|3L85|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgmp
Length = 195
Score = 30.8 bits (68), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 56 SFVPRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREV 115
+ +P L++T+ Y + VL+ Q + PAG +++GET E A RE+
Sbjct: 50 AVIPVLQRTLHYECI---------VLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALREL 100
Query: 116 LEETG 120
EETG
Sbjct: 101 EEETG 105
>pdb|2DSB|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|C Chain C, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|D Chain D, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
Length = 227
Score = 30.8 bits (68), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 56 SFVPRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREV 115
+ +P L++T+ Y + VL+ Q + PAG +++GET E A RE+
Sbjct: 63 AVIPVLQRTLHYECI---------VLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALREL 113
Query: 116 LEETG 120
EETG
Sbjct: 114 EEETG 118
>pdb|3U53|A Chain A, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|B Chain B, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|C Chain C, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|D Chain D, Crystal Structure Of Human Ap4a Hydrolase
Length = 155
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 75 NSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLL 129
N+ L++Q + I + W P G VE GE E RE EE G+E T++
Sbjct: 21 NNAIEFLLLQASDGIHH--WTPPKGHVEPGEDDLETALRETQEEAGIEAGQLTII 73
>pdb|3BM4|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Ampcpr
pdb|3BM4|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Ampcpr
Length = 210
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 56 SFVPRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREV 115
+ +P L++T+ Y + VL+ Q + PAG +++GET E A RE+
Sbjct: 63 AVIPVLQRTLHYECI---------VLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALREL 113
Query: 116 LEETG 120
EETG
Sbjct: 114 EEETG 118
>pdb|2DSC|A Chain A, Crystal Structure Of Human Adp-ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Adp-ribose
pdb|2DSC|B Chain B, Crystal Structure Of Human Adp-ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Adp-ribose
pdb|2DSD|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Amp
pdb|2DSD|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Amp
Length = 212
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 9/65 (13%)
Query: 56 SFVPRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREV 115
+ +P L++T+ Y + VL+ Q + PAG +++GET E A RE+
Sbjct: 65 AVIPVLQRTLHYECI---------VLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALREL 115
Query: 116 LEETG 120
EETG
Sbjct: 116 EEETG 120
>pdb|2JVB|A Chain A, Solution Structure Of Catalytic Domain Of Ydcp2
Length = 146
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 62 KKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGL 121
KK++ A+ + + +L++Q +S +W P GK+ + E + REV EE G
Sbjct: 1 KKSIPVRGAAIFNENLSKILLVQGTES---DSWSFPRGKISKDENDIDCCIREVKEEIGF 57
Query: 122 EMA 124
++
Sbjct: 58 DLT 60
>pdb|2PQV|A Chain A, Crystal Structure Of MuttNUDIX FAMILY PROTEIN FROM
STREPTOCOCCUS Pneumoniae
pdb|2PQV|B Chain B, Crystal Structure Of MuttNUDIX FAMILY PROTEIN FROM
STREPTOCOCCUS Pneumoniae
Length = 154
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 55 ESFVPRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKRE 114
+ F ++ TV + V A + +N L++ + K G +Y G ++ E+ E+AV RE
Sbjct: 7 QDFRTKVDNTV-FGVRATALIVQNHKLLVTKDK----GKYYTIGGAIQVNESTEDAVVRE 61
Query: 115 VLEETGLEMAPTTLLAVETAR 135
V EE G++ L V R
Sbjct: 62 VKEELGVKAQAGQLAFVVENR 82
>pdb|1NQY|A Chain A, The Structure Of A Coa Pyrophosphatase From D. Radiodurans
pdb|1NQZ|A Chain A, The Structure Of A Coa Pyrophosphatase From D. Radiodurans
Complexed With A Magnesium Ion
Length = 194
Score = 29.3 bits (64), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 68 IVMAVIINSKNAVLMMQEAKSICN--GAWYLPAGKVEEGETLEEAVKREVLEETGLEMAP 125
+++A+ + VL+ + + G P G ++ GET +A RE EE L+ A
Sbjct: 38 VLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVALDPAA 97
Query: 126 TTLLA 130
TLL
Sbjct: 98 VTLLG 102
>pdb|1XSA|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (E63a Mutant)
pdb|1XSB|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (E63a Mutant) In Complex With Atp. No Atp
Restraints Included
pdb|1XSC|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (e63a Mutant) In Complex With Atp
Length = 153
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 75 NSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLL 129
N+ L++Q + I + W P G VE GE E R EE G+E T++
Sbjct: 26 NNAIEFLLLQASDGIHH--WTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTII 78
>pdb|1Q54|A Chain A, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase: Complex With The Bromohydrine Of Ipp
pdb|1Q54|B Chain B, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase: Complex With The Bromohydrine Of Ipp
pdb|1OW2|A Chain A, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase: Complex Of C67a Mutant With Eipp
pdb|1OW2|B Chain B, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase: Complex Of C67a Mutant With Eipp
Length = 183
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 73 IINSKNAVLMMQEA--KSICNGAWYLP-AGKVEEGETLEEAVKREVLEETGLEMAP 125
+ N+K +L+ + A K G W AG + GE+ E+AV R E G+E+ P
Sbjct: 39 LFNAKGQLLVTRRALSKKAWPGVWTNSVAGHPQLGESNEDAVIRRCRYELGVEITP 94
>pdb|1HX3|A Chain A, Crystal Structure Of E.Coli Isopentenyl
Diphosphate:dimethylallyl Diphosphate Isomerase
pdb|1HX3|B Chain B, Crystal Structure Of E.Coli Isopentenyl
Diphosphate:dimethylallyl Diphosphate Isomerase
Length = 190
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 73 IINSKNAVLMMQEA--KSICNGAWYLP-AGKVEEGETLEEAVKREVLEETGLEMAP 125
+ N+K +L+ + A K G W AG + GE+ E+AV R E G+E+ P
Sbjct: 39 LFNAKGQLLVTRRALSKKAWPGVWTNSVAGHPQLGESNEDAVIRRCRYELGVEITP 94
>pdb|2W4E|A Chain A, Structure Of An N-Terminally Truncated Nudix Hydrolase
Dr2204 From Deinococcus Radiodurans
pdb|2W4E|B Chain B, Structure Of An N-Terminally Truncated Nudix Hydrolase
Dr2204 From Deinococcus Radiodurans
Length = 145
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 98 AGKVEEGETLEEAVKREVLEETG 120
AG VE+GE L A RE+LEE G
Sbjct: 38 AGGVEKGEDLGAAAARELLEEVG 60
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG1|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG3|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG3|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG6|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG6|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG8|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|4EG8|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|3U1E|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1E|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1F|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1F|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1G|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U1G|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U20|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
pdb|3U20|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
Length = 542
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 9/99 (9%)
Query: 16 ITPVLENIFSG--KVCHDGEDQCDYDLTEQADFAPARGVIPESFVPRLKKTVTYIVMAVI 73
I+ L N+F K G D Y L ++ F+ ++ + RL + +
Sbjct: 324 ISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTL---- 379
Query: 74 INSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVK 112
N V+ AK NG W PA EE E+L + +K
Sbjct: 380 ---GNLVMRCTSAKINVNGEWPSPAAYTEEDESLIQLIK 415
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|3TUN|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|4EG4|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG4|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG7|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EG7|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EGA|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|4EGA|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|3U1Z|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
pdb|3U1Z|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
Length = 542
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 9/99 (9%)
Query: 16 ITPVLENIFSG--KVCHDGEDQCDYDLTEQADFAPARGVIPESFVPRLKKTVTYIVMAVI 73
I+ L N+F K G D Y L ++ F+ ++ + RL + +
Sbjct: 324 ISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTL---- 379
Query: 74 INSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVK 112
N V+ AK NG W PA EE E+L + +K
Sbjct: 380 ---GNLVMRCTSAKINVNGEWPSPAAYTEEDESLIQLIK 415
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
pdb|4EG5|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
Length = 542
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 9/99 (9%)
Query: 16 ITPVLENIFSG--KVCHDGEDQCDYDLTEQADFAPARGVIPESFVPRLKKTVTYIVMAVI 73
I+ L N+F K G D Y L ++ F+ ++ + RL + +
Sbjct: 324 ISKSLGNVFDPVEKAEEFGYDALKYFLLRESGFSDDGDYSDKNMIARLNGELADTL---- 379
Query: 74 INSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVK 112
N V+ AK NG W PA EE E+L + +K
Sbjct: 380 ---GNLVMRCTSAKINVNGEWPSPAAYTEEDESLIQLIK 415
>pdb|1VHZ|A Chain A, Crystal Structure Of Adp Compounds Hydrolase
pdb|1VHZ|B Chain B, Crystal Structure Of Adp Compounds Hydrolase
Length = 198
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%)
Query: 60 RLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEET 119
R++ T VM V I + +L+ + A + G ++ GE++ EA RE+ EE
Sbjct: 43 RMRPTNREAVMIVPIVDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEV 102
Query: 120 GLEMAPTTLL 129
G T L
Sbjct: 103 GFGANDLTFL 112
>pdb|2JH7|A Chain A, Crystal Structure Of Toxoplasma Gondii Micronemal Protein
1 Bound To 6'-Sialyl-N-Acetyllactosamine
pdb|2JHD|A Chain A, Crystal Structure Of Toxoplasma Gondii Micronemal Protein
1 Bound To 3'-Sialyl-N-Acetyllactosamine
pdb|3F53|A Chain A, Crystal Structure Of Toxoplasma Gondii Micronemal Protein
1 Bound To 2f-3'sialacnac
pdb|3F5A|A Chain A, Crystal Structure Of Toxoplasma Gondii Micronemal Protein
1 Bound To 3'sialacnac1-3
pdb|3F5E|A Chain A, Crystal Structure Of Toxoplasma Gondii Micronemal Protein
1 Bound To 2'f-3'sialacnac1-3
Length = 246
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Query: 53 IPESFVPRLKKTVTYIVMAVIINSKNAVL--MMQEAKSICNGAWYLPAGKVEEGETLEEA 110
P + R K + +A K ++L + E S C WY P G+ T E
Sbjct: 142 FPGTIARRSKGFGNNVEVAWRCYEKASLLYSVYAECASNCGTTWYCPGGRR---GTSTEL 198
Query: 111 VKREVLEETGLEMA 124
KR EE G+ A
Sbjct: 199 DKRHYTEEEGIRQA 212
>pdb|2JH1|A Chain A, Crystal Structure Of Toxoplasma Gondii Micronemal Protein
1
Length = 246
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Query: 53 IPESFVPRLKKTVTYIVMAVIINSKNAVL--MMQEAKSICNGAWYLPAGKVEEGETLEEA 110
P + R K + +A K ++L + E S C WY P G+ T E
Sbjct: 142 FPGTIARRSKGFGNNVEVAWRCYEKASLLYSVYAECASNCGTTWYCPGGRR---GTSTEL 198
Query: 111 VKREVLEETGLEMA 124
KR EE G+ A
Sbjct: 199 DKRHYTEEEGIRQA 212
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%)
Query: 96 LPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE 132
LP+GKVE L K E G+ +AP LLA +
Sbjct: 100 LPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATD 136
>pdb|3Q91|A Chain A, Crystal Structure Of Human Uridine Diphosphate Glucose
Pyrophosphatase (Nudt14)
pdb|3Q91|C Chain C, Crystal Structure Of Human Uridine Diphosphate Glucose
Pyrophosphatase (Nudt14)
pdb|3Q91|B Chain B, Crystal Structure Of Human Uridine Diphosphate Glucose
Pyrophosphatase (Nudt14)
pdb|3Q91|D Chain D, Crystal Structure Of Human Uridine Diphosphate Glucose
Pyrophosphatase (Nudt14)
Length = 218
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 96 LPAGKVEE-GETLEEAVKREVLEETGLEMAPTTLLAVET 133
L AG V++ G +LEE +E EE G +AP+ L V T
Sbjct: 99 LCAGLVDQPGLSLEEVACKEAWEECGYHLAPSDLRRVAT 137
>pdb|1I9A|A Chain A, Structural Studies Of Cholesterol Biosynthesis: Mevalonate
5-Diphosphate Decarboxylase And Isopentenyl Diphosphate
Isomerase
pdb|1I9A|B Chain B, Structural Studies Of Cholesterol Biosynthesis: Mevalonate
5-Diphosphate Decarboxylase And Isopentenyl Diphosphate
Isomerase
Length = 182
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 73 IINSKNAVLMMQEA--KSICNGAWYLP-AGKVEEGETLEEAVKREVLEETGLEMAP 125
+ N+K +L+ + A K G W G + GE+ E+AV R E G+E+ P
Sbjct: 39 LFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITP 94
>pdb|1X83|A Chain A, Y104f Ipp Isomerase Reacted With (S)-Bromohydrine Of Ipp
pdb|1X83|B Chain B, Y104f Ipp Isomerase Reacted With (S)-Bromohydrine Of Ipp
Length = 189
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 73 IINSKNAVLMMQEA--KSICNGAWYLP-AGKVEEGETLEEAVKREVLEETGLEMAP 125
+ N+K +L+ + A K G W G + GE+ E+AV R E G+E+ P
Sbjct: 39 LFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITP 94
>pdb|2G73|A Chain A, Y104f Mutant Type 1 Ipp Isomerase Complex With Eipp
pdb|2G73|B Chain B, Y104f Mutant Type 1 Ipp Isomerase Complex With Eipp
pdb|2G74|A Chain A, Y104f Mutant Of Type 1 Isopentenylpyrophosphate-
Dimethylallylpyrophosphate Isomerase
pdb|2G74|B Chain B, Y104f Mutant Of Type 1 Isopentenylpyrophosphate-
Dimethylallylpyrophosphate Isomerase
pdb|2B2K|A Chain A, Structure Of Y104f Idi-1 Mutant In Complex With Eipp
pdb|2B2K|B Chain B, Structure Of Y104f Idi-1 Mutant In Complex With Eipp
Length = 183
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 73 IINSKNAVLMMQEA--KSICNGAWYLP-AGKVEEGETLEEAVKREVLEETGLEMAP 125
+ N+K +L+ + A K G W G + GE+ E+AV R E G+E+ P
Sbjct: 39 LFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITP 94
>pdb|1X84|A Chain A, Ipp Isomerase (Wt) Reacted With (S)-Bromohydrine Of Ipp
pdb|1X84|B Chain B, Ipp Isomerase (Wt) Reacted With (S)-Bromohydrine Of Ipp
Length = 189
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 73 IINSKNAVLMMQEA--KSICNGAWYLP-AGKVEEGETLEEAVKREVLEETGLEMAP 125
+ N+K +L+ + A K G W G + GE+ E+AV R E G+E+ P
Sbjct: 39 LFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITP 94
>pdb|1NFS|A Chain A, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-dimethylallylpyrophosphate
Isomerase: Complex With Nipp
pdb|1NFS|B Chain B, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-dimethylallylpyrophosphate
Isomerase: Complex With Nipp
pdb|1NFZ|A Chain A, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase: Complex With Eipp
pdb|1NFZ|B Chain B, Structure And Mechanism Of Action Of
Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase: Complex With Eipp
pdb|1PPV|A Chain A, Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase In Complex With The Bromohydrine Of Ipp
pdb|1PPV|B Chain B, Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase In Complex With The Bromohydrine Of Ipp
pdb|1PPW|A Chain A, Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase In Complex With The Bromohydrine Of Ipp
pdb|1PPW|B Chain B, Isopentenylpyrophosphate-Dimethylallylpyrophosphate
Isomerase In Complex With The Bromohydrine Of Ipp
pdb|1PVF|A Chain A, E.coli Ipp Isomerase In Complex With Diphosphate
pdb|1PVF|B Chain B, E.coli Ipp Isomerase In Complex With Diphosphate
pdb|2VNP|A Chain A, Monoclinic Form Of Idi-1
pdb|2VNP|B Chain B, Monoclinic Form Of Idi-1
pdb|2VNQ|A Chain A, Monoclinic Form Of Idi-1
pdb|2VNQ|B Chain B, Monoclinic Form Of Idi-1
Length = 183
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 73 IINSKNAVLMMQEA--KSICNGAWYLP-AGKVEEGETLEEAVKREVLEETGLEMAP 125
+ N+K +L+ + A K G W G + GE+ E+AV R E G+E+ P
Sbjct: 39 LFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITP 94
>pdb|1HZT|A Chain A, Crystal Structure Of Metal-Free Isopentenyl
Diphosphate:dimethylallyl Diphosphate Isomerase
Length = 190
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 73 IINSKNAVLMMQEA--KSICNGAWYLP-AGKVEEGETLEEAVKREVLEETGLEMAP 125
+ N+K +L+ + A K G W G + GE+ E+AV R E G+E+ P
Sbjct: 39 LFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITP 94
>pdb|3SON|A Chain A, Crystal Structure Of A Hypothetical Nudix Hydrolase
(Lmof2365_2679) From Listeria Monocytogenes (Atcc 19115)
At 1.70 A Resolution
pdb|3SON|B Chain B, Crystal Structure Of A Hypothetical Nudix Hydrolase
(Lmof2365_2679) From Listeria Monocytogenes (Atcc 19115)
At 1.70 A Resolution
Length = 149
Score = 26.6 bits (57), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 94 WYLPAGKVEEGETLEEAVKREVLEETGLEM 123
W AG E+ E + E KRE +EE L++
Sbjct: 33 WQFVAGGGEDEEAISETAKRESIEELNLDV 62
>pdb|1R67|A Chain A, Y104a Mutant Of E.coli Ipp Isomerase
Length = 190
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 73 IINSKNAVLMMQEA--KSICNGAWYLP-AGKVEEGETLEEAVKREVLEETGLEMAP 125
+ N+K +L+ + A K G W G + GE+ E+AV R E G+E+ P
Sbjct: 39 LFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITP 94
>pdb|1ZMO|A Chain A, Apo Structure Of Haloalcohol Dehalogenase Hhea Of
Arthrobacter Sp. Ad2
pdb|1ZMO|B Chain B, Apo Structure Of Haloalcohol Dehalogenase Hhea Of
Arthrobacter Sp. Ad2
pdb|1ZMO|C Chain C, Apo Structure Of Haloalcohol Dehalogenase Hhea Of
Arthrobacter Sp. Ad2
pdb|1ZMO|D Chain D, Apo Structure Of Haloalcohol Dehalogenase Hhea Of
Arthrobacter Sp. Ad2
pdb|1ZMO|E Chain E, Apo Structure Of Haloalcohol Dehalogenase Hhea Of
Arthrobacter Sp. Ad2
pdb|1ZMO|F Chain F, Apo Structure Of Haloalcohol Dehalogenase Hhea Of
Arthrobacter Sp. Ad2
pdb|1ZMO|G Chain G, Apo Structure Of Haloalcohol Dehalogenase Hhea Of
Arthrobacter Sp. Ad2
pdb|1ZMO|H Chain H, Apo Structure Of Haloalcohol Dehalogenase Hhea Of
Arthrobacter Sp. Ad2
Length = 244
Score = 26.2 bits (56), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 23/59 (38%)
Query: 57 FVPRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREV 115
+ P TV + A S++ +L+ + N Y P E L E V R+V
Sbjct: 147 YGPARAATVALVESAAKTLSRDGILLYAIGPNFFNNPTYFPTSDWENNPELRERVDRDV 205
>pdb|1FO6|A Chain A, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|B Chain B, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|C Chain C, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|D Chain D, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
Length = 304
Score = 25.8 bits (55), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 74 INSKNAVLMMQEAKSICNGAWYLPAGKV--EEG 104
+ S + +L MQ A S NGAW AGKV EEG
Sbjct: 211 LTSFHHLLSMQ-AGSYQNGAWSAAAGKVGMEEG 242
>pdb|2GGK|A Chain A, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
pdb|2GGK|B Chain B, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
pdb|2GGK|C Chain C, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
pdb|2GGK|D Chain D, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
Length = 304
Score = 25.8 bits (55), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 74 INSKNAVLMMQEAKSICNGAWYLPAGKV--EEG 104
+ S + +L MQ A S NGAW AGKV EEG
Sbjct: 211 LTSFHHLLSMQ-AGSYQNGAWSAAAGKVGMEEG 242
>pdb|3F6A|A Chain A, Crystal Structure Of A Hydrolase, Nudix Family From
Clostridium Perfringens
pdb|3F6A|B Chain B, Crystal Structure Of A Hydrolase, Nudix Family From
Clostridium Perfringens
Length = 159
Score = 25.8 bits (55), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 67 YIVMAVIINSKNAVLMMQEAKSICNGAWYLP-AGKVEEGETLEEAVKREVLEETGLEMA 124
+ ++V I K+ VL+ K+ LP G +E E EEA RE EE GL +
Sbjct: 6 HFTVSVFIVCKDKVLLHLHKKA----KKXLPLGGHIEVNELPEEACIREAKEEAGLNVT 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,765,915
Number of Sequences: 62578
Number of extensions: 140872
Number of successful extensions: 487
Number of sequences better than 100.0: 103
Number of HSP's better than 100.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 401
Number of HSP's gapped (non-prelim): 103
length of query: 135
length of database: 14,973,337
effective HSP length: 88
effective length of query: 47
effective length of database: 9,466,473
effective search space: 444924231
effective search space used: 444924231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)