Query psy10892
Match_columns 135
No_of_seqs 146 out of 1494
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 21:07:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10892.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10892hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03430 GDPMH GDP-mannose glyc 99.8 3.3E-18 7.1E-23 121.4 9.0 68 65-132 11-80 (144)
2 cd04679 Nudix_Hydrolase_20 Mem 99.8 9.2E-18 2E-22 115.6 10.1 68 66-133 2-69 (125)
3 COG1051 ADP-ribose pyrophospha 99.7 1.2E-17 2.6E-22 119.1 9.1 69 65-134 9-77 (145)
4 PRK15434 GDP-mannose mannosyl 99.7 2.3E-17 5E-22 119.3 9.3 67 65-131 16-84 (159)
5 cd04671 Nudix_Hydrolase_13 Mem 99.7 3.7E-17 8E-22 113.2 9.7 65 68-132 2-66 (123)
6 cd04700 DR1025_like DR1025 fro 99.7 7.3E-17 1.6E-21 114.1 9.4 68 65-132 12-79 (142)
7 cd04681 Nudix_Hydrolase_22 Mem 99.7 7.2E-17 1.6E-21 111.6 8.8 64 68-131 3-66 (130)
8 cd04678 Nudix_Hydrolase_19 Mem 99.7 8.4E-17 1.8E-21 111.2 9.1 68 66-133 2-69 (129)
9 PLN02325 nudix hydrolase 99.7 1.5E-16 3.2E-21 113.1 10.1 68 65-133 8-75 (144)
10 cd04684 Nudix_Hydrolase_25 Con 99.7 1.2E-16 2.6E-21 109.5 8.4 63 69-132 3-65 (128)
11 cd04670 Nudix_Hydrolase_12 Mem 99.7 1.6E-16 3.4E-21 109.7 9.0 65 67-132 3-67 (127)
12 cd04669 Nudix_Hydrolase_11 Mem 99.7 1.9E-16 4.2E-21 108.9 8.8 64 69-133 3-66 (121)
13 PRK15472 nucleoside triphospha 99.7 1.5E-16 3.2E-21 111.9 7.8 58 68-125 5-64 (141)
14 cd04673 Nudix_Hydrolase_15 Mem 99.7 2.3E-16 4.9E-21 107.4 8.1 63 69-132 3-65 (122)
15 cd04696 Nudix_Hydrolase_37 Mem 99.7 2.8E-16 6E-21 108.3 8.6 62 68-131 4-65 (125)
16 PRK09438 nudB dihydroneopterin 99.7 2.6E-16 5.6E-21 111.5 8.6 57 65-123 6-62 (148)
17 cd03671 Ap4A_hydrolase_plant_l 99.7 3.7E-16 7.9E-21 110.9 8.6 64 66-131 3-66 (147)
18 cd04511 Nudix_Hydrolase_4 Memb 99.7 8.7E-16 1.9E-20 106.7 10.1 67 66-133 13-79 (130)
19 cd04691 Nudix_Hydrolase_32 Mem 99.7 7.1E-16 1.5E-20 105.6 9.3 61 69-130 3-65 (117)
20 cd03675 Nudix_Hydrolase_2 Cont 99.7 4.6E-16 9.9E-21 108.1 8.2 63 69-133 3-65 (134)
21 cd04682 Nudix_Hydrolase_23 Mem 99.7 4.6E-16 1E-20 106.8 8.0 60 68-128 3-65 (122)
22 cd03427 MTH1 MutT homolog-1 (M 99.7 6.8E-16 1.5E-20 107.5 8.8 63 70-133 5-67 (137)
23 PF00293 NUDIX: NUDIX domain; 99.6 8E-16 1.7E-20 105.6 8.7 67 66-132 2-70 (134)
24 cd04677 Nudix_Hydrolase_18 Mem 99.6 7.6E-16 1.6E-20 106.4 8.5 64 66-132 7-70 (132)
25 cd04664 Nudix_Hydrolase_7 Memb 99.6 5.5E-16 1.2E-20 107.2 7.7 64 67-131 2-67 (129)
26 cd03674 Nudix_Hydrolase_1 Memb 99.6 6.5E-16 1.4E-20 108.5 8.0 60 66-128 2-62 (138)
27 cd04683 Nudix_Hydrolase_24 Mem 99.6 1.3E-15 2.7E-20 103.9 7.8 56 69-125 3-59 (120)
28 cd04680 Nudix_Hydrolase_21 Mem 99.6 1.4E-15 3.1E-20 103.3 8.0 62 69-133 3-65 (120)
29 cd04693 Nudix_Hydrolase_34 Mem 99.6 1E-15 2.3E-20 105.6 7.3 60 68-128 2-64 (127)
30 cd04692 Nudix_Hydrolase_33 Mem 99.6 1.2E-15 2.7E-20 107.7 7.8 61 66-126 2-68 (144)
31 cd04690 Nudix_Hydrolase_31 Mem 99.6 2.5E-15 5.3E-20 102.1 8.7 60 69-131 3-64 (118)
32 cd04697 Nudix_Hydrolase_38 Mem 99.6 1.6E-15 3.5E-20 104.9 7.9 64 68-131 2-68 (126)
33 cd04699 Nudix_Hydrolase_39 Mem 99.6 1.5E-15 3.2E-20 104.2 7.5 62 68-129 3-66 (129)
34 PRK10776 nucleoside triphospha 99.6 4.3E-15 9.3E-20 101.7 9.7 64 68-131 6-70 (129)
35 cd02885 IPP_Isomerase Isopente 99.6 1.1E-15 2.4E-20 110.6 6.8 66 64-129 28-96 (165)
36 cd03424 ADPRase_NUDT5 ADP-ribo 99.6 3.4E-15 7.4E-20 104.1 9.0 65 67-131 3-68 (137)
37 PRK10546 pyrimidine (deoxy)nuc 99.6 3.7E-15 7.9E-20 103.6 9.0 60 72-131 9-69 (135)
38 cd04676 Nudix_Hydrolase_17 Mem 99.6 3.5E-15 7.7E-20 101.9 8.8 62 67-131 3-64 (129)
39 PRK00241 nudC NADH pyrophospha 99.6 1.5E-15 3.3E-20 117.3 7.5 118 8-131 77-195 (256)
40 cd03426 CoAse Coenzyme A pyrop 99.6 2.8E-15 6E-20 107.8 8.3 64 68-131 4-72 (157)
41 cd03429 NADH_pyrophosphatase N 99.6 1.6E-15 3.4E-20 105.9 6.7 62 69-131 3-64 (131)
42 cd04672 Nudix_Hydrolase_14 Mem 99.6 3.6E-15 7.9E-20 102.5 8.3 62 68-133 4-65 (123)
43 cd04687 Nudix_Hydrolase_28 Mem 99.6 4E-15 8.6E-20 102.8 8.5 63 68-132 3-65 (128)
44 cd03673 Ap6A_hydrolase Diadeno 99.6 2.1E-15 4.6E-20 103.7 6.8 61 68-131 3-66 (131)
45 PRK00714 RNA pyrophosphohydrol 99.6 5.2E-15 1.1E-19 106.4 8.9 65 65-131 7-71 (156)
46 cd04694 Nudix_Hydrolase_35 Mem 99.6 7.2E-15 1.6E-19 104.5 9.2 65 67-131 2-72 (143)
47 cd04689 Nudix_Hydrolase_30 Mem 99.6 7E-15 1.5E-19 101.1 8.7 61 68-132 3-63 (125)
48 TIGR00586 mutt mutator mutT pr 99.6 1.4E-14 3E-19 99.5 9.6 65 67-131 5-70 (128)
49 cd03672 Dcp2p mRNA decapping e 99.6 4.1E-15 8.9E-20 105.8 7.1 55 68-125 3-58 (145)
50 PRK15393 NUDIX hydrolase YfcD; 99.6 1E-14 2.2E-19 107.2 8.7 68 63-130 34-104 (180)
51 cd04688 Nudix_Hydrolase_29 Mem 99.6 1.6E-14 3.4E-19 99.5 8.6 59 70-132 5-63 (126)
52 cd04666 Nudix_Hydrolase_9 Memb 99.6 1.3E-14 2.9E-19 100.3 8.0 62 69-133 3-68 (122)
53 PRK03759 isopentenyl-diphospha 99.6 1.2E-14 2.6E-19 107.1 7.7 64 62-125 30-96 (184)
54 cd03425 MutT_pyrophosphohydrol 99.6 2.4E-14 5.3E-19 96.8 8.6 63 69-131 4-67 (124)
55 cd04667 Nudix_Hydrolase_10 Mem 99.5 2.2E-14 4.8E-19 97.1 7.8 57 71-131 4-60 (112)
56 cd04695 Nudix_Hydrolase_36 Mem 99.5 1.6E-14 3.4E-19 100.5 7.2 52 74-126 10-61 (131)
57 PRK11762 nudE adenosine nucleo 99.5 4.8E-14 1E-18 103.9 10.1 65 68-132 49-114 (185)
58 cd04686 Nudix_Hydrolase_27 Mem 99.5 3.2E-14 6.9E-19 99.2 8.7 60 69-132 3-63 (131)
59 PRK05379 bifunctional nicotina 99.5 3.3E-14 7E-19 113.8 9.3 62 67-129 204-265 (340)
60 cd04674 Nudix_Hydrolase_16 Mem 99.5 6.3E-14 1.4E-18 96.8 9.4 55 71-126 9-63 (118)
61 cd04685 Nudix_Hydrolase_26 Mem 99.5 5.6E-14 1.2E-18 98.7 9.1 62 68-129 2-66 (133)
62 cd03428 Ap4A_hydrolase_human_l 99.5 1.4E-14 3.1E-19 99.9 5.4 58 68-129 4-64 (130)
63 TIGR02150 IPP_isom_1 isopenten 99.5 2.8E-14 6.1E-19 102.7 7.1 65 61-127 22-89 (158)
64 cd02883 Nudix_Hydrolase Nudix 99.5 8E-14 1.7E-18 93.4 8.1 63 68-131 2-64 (123)
65 cd04661 MRP_L46 Mitochondrial 99.5 1.1E-13 2.3E-18 96.8 6.5 49 76-125 11-59 (132)
66 KOG3084|consensus 99.5 1.3E-13 2.8E-18 107.9 7.4 65 65-129 186-250 (345)
67 cd04665 Nudix_Hydrolase_8 Memb 99.5 4.1E-13 9E-18 92.6 8.6 58 71-133 5-62 (118)
68 PRK10707 putative NUDIX hydrol 99.5 4E-13 8.7E-18 99.7 9.0 58 75-132 41-101 (190)
69 cd03676 Nudix_hydrolase_3 Memb 99.4 4.6E-13 9.9E-18 98.0 8.0 65 62-126 28-99 (180)
70 cd04662 Nudix_Hydrolase_5 Memb 99.4 8.6E-13 1.9E-17 92.0 8.6 47 78-124 15-65 (126)
71 COG2816 NPY1 NTP pyrophosphohy 99.4 4E-13 8.8E-18 104.2 7.4 118 9-131 90-207 (279)
72 PRK08999 hypothetical protein; 99.4 1.1E-12 2.5E-17 103.2 9.3 65 66-130 5-70 (312)
73 TIGR00052 nudix-type nucleosid 99.4 7.7E-13 1.7E-17 97.8 7.3 64 68-131 46-116 (185)
74 TIGR02705 nudix_YtkD nucleosid 99.4 2.6E-12 5.7E-17 92.7 8.8 59 70-133 28-86 (156)
75 PRK10729 nudF ADP-ribose pyrop 99.4 4.7E-12 1E-16 94.8 9.4 63 68-130 51-120 (202)
76 PLN02709 nudix hydrolase 99.3 4E-12 8.6E-17 96.3 7.6 55 78-132 51-108 (222)
77 COG0494 MutT NTP pyrophosphohy 99.3 1.4E-11 3E-16 84.0 7.6 52 78-131 24-78 (161)
78 PLN02791 Nudix hydrolase homol 99.2 3.1E-11 6.8E-16 104.8 9.0 66 61-126 27-96 (770)
79 cd04663 Nudix_Hydrolase_6 Memb 99.2 2.9E-11 6.2E-16 84.4 6.5 51 69-123 3-55 (126)
80 PRK15009 GDP-mannose pyrophosp 99.2 8E-11 1.7E-15 87.5 8.8 63 68-131 47-117 (191)
81 PLN03143 nudix hydrolase; Prov 99.2 1.5E-10 3.3E-15 90.9 8.5 53 79-131 144-198 (291)
82 TIGR01084 mutY A/G-specific ad 99.2 4.2E-11 9.1E-16 93.5 5.2 99 1-99 160-261 (275)
83 PLN02552 isopentenyl-diphospha 99.1 2.1E-10 4.7E-15 88.3 8.7 64 62-125 52-135 (247)
84 KOG2839|consensus 99.1 1.4E-10 3.1E-15 81.8 6.5 65 64-130 7-74 (145)
85 cd03670 ADPRase_NUDT9 ADP-ribo 99.1 3.2E-10 6.9E-15 84.0 6.7 42 79-123 50-91 (186)
86 PRK10880 adenine DNA glycosyla 99.1 1.3E-10 2.7E-15 93.5 4.5 114 1-122 164-280 (350)
87 COG1194 MutY A/G-specific DNA 98.9 3.9E-10 8.5E-15 89.8 2.2 102 1-103 168-273 (342)
88 PRK13910 DNA glycosylase MutY; 98.9 1.1E-09 2.4E-14 86.0 4.2 94 2-98 124-217 (289)
89 KOG3041|consensus 98.8 1.2E-08 2.7E-13 75.5 6.6 46 78-123 88-134 (225)
90 COG1443 Idi Isopentenyldiphosp 98.8 5E-09 1.1E-13 76.2 4.3 66 60-125 26-95 (185)
91 KOG3069|consensus 98.8 7.8E-09 1.7E-13 78.3 5.2 54 78-131 58-114 (246)
92 cd03431 DNA_Glycosylase_C DNA 98.7 1.1E-07 2.5E-12 63.7 7.9 51 69-120 6-57 (118)
93 KOG0648|consensus 98.7 3E-08 6.5E-13 77.6 4.6 65 65-129 114-180 (295)
94 COG4119 Predicted NTP pyrophos 98.2 2.9E-06 6.2E-11 59.1 4.8 46 79-124 19-68 (161)
95 PLN02839 nudix hydrolase 98.2 6.2E-06 1.3E-10 66.7 6.8 49 76-124 216-267 (372)
96 PF14815 NUDIX_4: NUDIX domain 98.0 7.8E-06 1.7E-10 55.3 3.5 55 71-126 2-57 (114)
97 KOG2457|consensus 97.6 5.4E-05 1.2E-09 61.7 2.9 50 1-50 261-310 (555)
98 KOG4195|consensus 97.5 7.5E-05 1.6E-09 56.6 3.3 38 79-119 140-177 (275)
99 PF13869 NUDIX_2: Nucleotide h 96.6 0.018 4E-07 42.7 8.3 52 68-123 46-99 (188)
100 KOG2937|consensus 96.5 0.0005 1.1E-08 54.8 -0.7 54 69-125 85-139 (348)
101 KOG0142|consensus 96.1 0.0023 4.9E-08 48.0 1.1 64 62-125 48-123 (225)
102 KOG4432|consensus 96.0 0.008 1.7E-07 47.7 3.8 42 93-134 80-121 (405)
103 KOG4313|consensus 95.7 0.0087 1.9E-07 46.3 2.8 46 79-124 149-197 (306)
104 COG4112 Predicted phosphoester 94.9 0.15 3.2E-06 37.2 6.8 61 71-132 66-141 (203)
105 KOG1689|consensus 94.3 0.15 3.3E-06 37.5 5.6 49 68-120 72-122 (221)
106 KOG4432|consensus 89.1 0.5 1.1E-05 37.7 3.5 35 93-127 285-319 (405)
107 KOG4548|consensus 82.9 2.4 5.1E-05 33.0 4.3 42 80-122 141-183 (263)
108 PF14443 DBC1: DBC1 82.2 1.5 3.3E-05 30.6 2.7 35 91-125 23-60 (126)
109 PF03487 IL13: Interleukin-13; 70.0 5 0.00011 22.4 2.1 24 96-119 13-36 (43)
110 KOG2457|consensus 57.1 16 0.00035 30.6 3.7 44 78-121 387-434 (555)
111 KOG0648|consensus 42.6 2.2 4.8E-05 33.9 -3.1 51 74-126 38-88 (295)
112 PRK10702 endonuclease III; Pro 40.7 14 0.00029 27.9 0.9 31 16-46 174-204 (211)
113 PF12860 PAS_7: PAS fold 33.4 18 0.0004 23.4 0.6 41 69-112 6-46 (115)
114 PF10576 EndIII_4Fe-2S: Iron-s 31.5 26 0.00056 15.7 0.7 17 29-45 1-17 (17)
115 PF09505 Dimeth_Pyl: Dimethyla 30.4 31 0.00068 28.2 1.5 24 100-123 408-431 (466)
116 PF07026 DUF1317: Protein of u 29.8 43 0.00093 20.2 1.7 14 92-105 22-35 (60)
117 KOG2937|consensus 29.6 13 0.00028 30.2 -0.8 35 91-125 263-297 (348)
118 KOG1794|consensus 22.7 1.7E+02 0.0037 23.7 4.3 58 71-133 17-75 (336)
119 COG4009 Uncharacterized protei 21.3 1.1E+02 0.0024 19.8 2.4 25 100-126 55-79 (88)
No 1
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.76 E-value=3.3e-18 Score=121.45 Aligned_cols=68 Identities=28% Similarity=0.475 Sum_probs=59.7
Q ss_pred ccEEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccc--eEEEEE
Q psy10892 65 VTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPT--TLLAVE 132 (135)
Q Consensus 65 ~~~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~--~~~~~~ 132 (135)
....++++|++.+++|||+||.+.+++|.|.+|||+++.|||+++||+||++||||+++... +++++.
T Consensus 11 p~v~v~~vI~~~~g~vLl~~R~~~p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~l~~~ 80 (144)
T cd03430 11 PLVSIDLIVENEDGQYLLGKRTNRPAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAELLGVF 80 (144)
T ss_pred CeEEEEEEEEeCCCeEEEEEccCCCCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccceEEEEE
Confidence 44567888888889999999987677899999999999999999999999999999998876 666654
No 2
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=9.2e-18 Score=115.56 Aligned_cols=68 Identities=35% Similarity=0.516 Sum_probs=59.7
Q ss_pred cEEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892 66 TYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET 133 (135)
Q Consensus 66 ~~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~ 133 (135)
+..+++++++++++|||++|.+.+.+|.|.+|||++++||++++||+||++||||+++...+++++..
T Consensus 2 ~~~~~~~i~~~~~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~~~~~~~~ 69 (125)
T cd04679 2 RVGCGAAILRDDGKLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRLLCVVD 69 (125)
T ss_pred ceEEEEEEECCCCEEEEEEecCCCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccceEEEEEe
Confidence 35577888888889999999865567999999999999999999999999999999998888877643
No 3
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.74 E-value=1.2e-17 Score=119.07 Aligned_cols=69 Identities=43% Similarity=0.582 Sum_probs=60.2
Q ss_pred ccEEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEeC
Q psy10892 65 VTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVETA 134 (135)
Q Consensus 65 ~~~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~~ 134 (135)
....+.+++... ++|||+||.+.++.|.|.+|||+++.|||+++||.||++||||+++...+++++...
T Consensus 9 p~~~v~~~i~~~-~~iLLvrR~~~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~~~~v~~~ 77 (145)
T COG1051 9 PLVAVGALIVRN-GRILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLELLAVFDD 77 (145)
T ss_pred cceeeeEEEEeC-CEEEEEEecCCCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcccceeEEEEecC
Confidence 444555655555 499999999999999999999999999999999999999999999999999988764
No 4
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.73 E-value=2.3e-17 Score=119.31 Aligned_cols=67 Identities=27% Similarity=0.491 Sum_probs=57.0
Q ss_pred ccEEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCcccc--ceEEEE
Q psy10892 65 VTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAP--TTLLAV 131 (135)
Q Consensus 65 ~~~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~--~~~~~~ 131 (135)
...++.++|++++++|||+||.+.+.+|.|+||||+++.|||+++||+||++||||+++.. .+++++
T Consensus 16 ~~~~v~~vI~~~~g~VLL~kR~~~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~~~~ 84 (159)
T PRK15434 16 PLISLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGV 84 (159)
T ss_pred ceEEEEEEEECCCCEEEEEEccCCCCCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccccceEEEE
Confidence 3457788888888999999998766789999999999999999999999999999998743 355554
No 5
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.73 E-value=3.7e-17 Score=113.22 Aligned_cols=65 Identities=68% Similarity=1.069 Sum_probs=58.2
Q ss_pred EEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892 68 IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE 132 (135)
Q Consensus 68 ~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~ 132 (135)
++++++++.+++|||++|.+.++++.|.+|||+++.||++++||.||++||||+.+...+++++.
T Consensus 2 ~~~~vv~~~~~~vLl~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~ 66 (123)
T cd04671 2 IVAAVILNNQGEVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPTTLLSVE 66 (123)
T ss_pred EEEEEEEcCCCEEEEEEecCCCCCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecceEEEEE
Confidence 56778888889999999987667899999999999999999999999999999999888777654
No 6
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.71 E-value=7.3e-17 Score=114.14 Aligned_cols=68 Identities=40% Similarity=0.607 Sum_probs=58.6
Q ss_pred ccEEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892 65 VTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE 132 (135)
Q Consensus 65 ~~~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~ 132 (135)
...++++++++.++++||++|+..+.++.|+||+|++++||++++||.||++||||+++...++++..
T Consensus 12 ~~~av~~vv~~~~~~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~ 79 (142)
T cd04700 12 EARAAGAVILNERNDVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKFLGTY 79 (142)
T ss_pred eeeeEEEEEEeCCCcEEEEEEcCCCCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeeccEEEEEE
Confidence 45567777888888999999876556799999999999999999999999999999999887776654
No 7
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.70 E-value=7.2e-17 Score=111.56 Aligned_cols=64 Identities=36% Similarity=0.537 Sum_probs=56.6
Q ss_pred EEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892 68 IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV 131 (135)
Q Consensus 68 ~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~ 131 (135)
++.++++++++++||++|.+.+++|.|.+|||+++.|||+.+||.||++||||+++...++++.
T Consensus 3 av~~~i~~~~~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~ 66 (130)
T cd04681 3 AVGVLILNEDGELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSYLFS 66 (130)
T ss_pred eEEEEEEcCCCcEEEEEecCCCCCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccceeEEEe
Confidence 4677788888999999998766788999999999999999999999999999999887776654
No 8
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.70 E-value=8.4e-17 Score=111.19 Aligned_cols=68 Identities=40% Similarity=0.598 Sum_probs=59.4
Q ss_pred cEEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892 66 TYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET 133 (135)
Q Consensus 66 ~~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~ 133 (135)
...+.++++++++++||++|.+.++++.|.+|||++++||++++||.||++||||+++...+.+++..
T Consensus 2 ~~~v~~ii~~~~~~iLl~~r~~~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~~~~~~~~ 69 (129)
T cd04678 2 RVGVGVFVLNPKGKVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQFLTVTN 69 (129)
T ss_pred ceEEEEEEECCCCeEEEEeccCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccceEEEEEEe
Confidence 34677888898899999999876668999999999999999999999999999999998877776543
No 9
>PLN02325 nudix hydrolase
Probab=99.70 E-value=1.5e-16 Score=113.08 Aligned_cols=68 Identities=38% Similarity=0.583 Sum_probs=57.7
Q ss_pred ccEEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892 65 VTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET 133 (135)
Q Consensus 65 ~~~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~ 133 (135)
....+.++++++ ++|||+||.+.+..|.|.+|||+++.|||+.+||.||++||||+++...+++++..
T Consensus 8 p~~~v~~vi~~~-~~vLL~rr~~~~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~~l~~~~ 75 (144)
T PLN02325 8 PRVAVVVFLLKG-NSVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKIELLTVTN 75 (144)
T ss_pred CeEEEEEEEEcC-CEEEEEEecCCCCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEec
Confidence 344555666664 69999999876667899999999999999999999999999999999988888753
No 10
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.69 E-value=1.2e-16 Score=109.51 Aligned_cols=63 Identities=41% Similarity=0.621 Sum_probs=54.8
Q ss_pred EEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892 69 VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE 132 (135)
Q Consensus 69 v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~ 132 (135)
+.++++++ ++|||++|++.+++|.|.+|||++++||++++||.||++||||+.+...+++++.
T Consensus 3 ~~~ii~~~-~~vLl~~~~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~ 65 (128)
T cd04684 3 AYAVIPRD-GKLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRRLGSA 65 (128)
T ss_pred eEEEEEeC-CEEEEEEccCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecceeeeEE
Confidence 45556665 8999999987667899999999999999999999999999999998887777664
No 11
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.69 E-value=1.6e-16 Score=109.69 Aligned_cols=65 Identities=35% Similarity=0.587 Sum_probs=56.0
Q ss_pred EEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892 67 YIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE 132 (135)
Q Consensus 67 ~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~ 132 (135)
..+++++++++++|||++|++. +++.|.+|||++++|||+++||.||++||||+.+....+++..
T Consensus 3 ~~~~~~v~~~~~~vLl~~r~~~-~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~~~~~~ 67 (127)
T cd04670 3 VGVGGLVLNEKNEVLVVQERNK-TPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVSVVGFR 67 (127)
T ss_pred eEEEEEEEcCCCeEEEEEccCC-CCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcceeEEEEEE
Confidence 4567778888889999988765 6799999999999999999999999999999998776666543
No 12
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.68 E-value=1.9e-16 Score=108.94 Aligned_cols=64 Identities=38% Similarity=0.606 Sum_probs=54.2
Q ss_pred EEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892 69 VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET 133 (135)
Q Consensus 69 v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~ 133 (135)
+++++++++++|||++|.+. ..+.|+||||+++.|||+.+||.||++||||+++...+++++..
T Consensus 3 ~~~ii~~~~~~vLL~~r~~~-~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~~~~~~~~ 66 (121)
T cd04669 3 ASIVIINDQGEILLIRRIKP-GKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEIFLIVN 66 (121)
T ss_pred eEEEEEeCCCEEEEEEEecC-CCCcEECCceeccCCCCHHHHHHHHHHHhhCeeEeeeeEEEEEe
Confidence 45566677689999998654 25799999999999999999999999999999998777777654
No 13
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.68 E-value=1.5e-16 Score=111.95 Aligned_cols=58 Identities=34% Similarity=0.607 Sum_probs=49.0
Q ss_pred EEEEEEEcCCCeEEEEEeec--CCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCcccc
Q psy10892 68 IVMAVIINSKNAVLMMQEAK--SICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAP 125 (135)
Q Consensus 68 ~v~~~i~~~~~~vLL~~r~~--~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~ 125 (135)
.+.+.+++.+++|||+||+. +.++|.|++|||++++|||+++||.||++||||+.+..
T Consensus 5 ~~~~~ii~~~~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~ 64 (141)
T PRK15472 5 TIVCPLIQNDGAYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLLL 64 (141)
T ss_pred eEEEEEEecCCEEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCceee
Confidence 45555556678999999864 34789999999999999999999999999999997643
No 14
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.67 E-value=2.3e-16 Score=107.44 Aligned_cols=63 Identities=49% Similarity=0.688 Sum_probs=53.4
Q ss_pred EEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892 69 VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE 132 (135)
Q Consensus 69 v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~ 132 (135)
+.++++++ +++||++|.+..+++.|.||||++++||++++||.||++||||+.+.....++..
T Consensus 3 v~~ii~~~-~~vLl~~r~~~~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~ 65 (122)
T cd04673 3 VGAVVFRG-GRVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGRLLTVV 65 (122)
T ss_pred EEEEEEEC-CEEEEEEEcCCCCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeeceeEEEE
Confidence 45556654 6999999987667899999999999999999999999999999998776666543
No 15
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.67 E-value=2.8e-16 Score=108.26 Aligned_cols=62 Identities=45% Similarity=0.671 Sum_probs=53.5
Q ss_pred EEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892 68 IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV 131 (135)
Q Consensus 68 ~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~ 131 (135)
+++++++++++++||+||.. ++|.|.+|||++++|||+++||.||++||||+++...+++++
T Consensus 4 ~v~~~i~~~~~~iLL~r~~~--~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~ 65 (125)
T cd04696 4 TVGALIYAPDGRILLVRTTK--WRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKFAMV 65 (125)
T ss_pred EEEEEEECCCCCEEEEEccC--CCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccceEEE
Confidence 46677788788999998753 468999999999999999999999999999999887776554
No 16
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.67 E-value=2.6e-16 Score=111.53 Aligned_cols=57 Identities=39% Similarity=0.548 Sum_probs=50.7
Q ss_pred ccEEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCcc
Q psy10892 65 VTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEM 123 (135)
Q Consensus 65 ~~~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~ 123 (135)
.+..+.+++++++++|||+||... ++.|++|||++++|||+.+||+||++||||+.+
T Consensus 6 ~~~~v~~vi~~~~~~vLl~~r~~~--~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~ 62 (148)
T PRK09438 6 RPVSVLVVIYTPDLGVLMLQRADD--PDFWQSVTGSLEEGETPAQTAIREVKEETGIDV 62 (148)
T ss_pred CceEEEEEEEeCCCeEEEEEecCC--CCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCc
Confidence 455677888888889999988653 589999999999999999999999999999988
No 17
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.66 E-value=3.7e-16 Score=110.89 Aligned_cols=64 Identities=34% Similarity=0.537 Sum_probs=56.2
Q ss_pred cEEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892 66 TYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV 131 (135)
Q Consensus 66 ~~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~ 131 (135)
+.+++++++++++++||++|.+.. +.|.+|+|++++||++.+||.||++||||+.+...++++.
T Consensus 3 ~~~v~~ii~~~~~~vLL~~r~~~~--~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~l~~ 66 (147)
T cd03671 3 RPNVGVVLFNEDGKVFVGRRIDTP--GAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAE 66 (147)
T ss_pred CceEEEEEEeCCCEEEEEEEcCCC--CCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEEEEE
Confidence 356778888888999999998754 8999999999999999999999999999999877776664
No 18
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.66 E-value=8.7e-16 Score=106.71 Aligned_cols=67 Identities=37% Similarity=0.446 Sum_probs=55.7
Q ss_pred cEEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892 66 TYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET 133 (135)
Q Consensus 66 ~~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~ 133 (135)
..+++++++++ +++||++|...+..|.|++|||++++||++++||.||++||||+.+....++++..
T Consensus 13 ~~~v~~ii~~~-~~vLL~kr~~~~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~~~~~~~~ 79 (130)
T cd04511 13 KIIVGCVPEWE-GKVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGLYAVYS 79 (130)
T ss_pred cEEEEEEEecC-CEEEEEEecCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEEeeeEEEEEe
Confidence 34455555554 79999999766667899999999999999999999999999999988777777654
No 19
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.66 E-value=7.1e-16 Score=105.55 Aligned_cols=61 Identities=34% Similarity=0.541 Sum_probs=49.2
Q ss_pred EEEEEEcCCCeEEEEEeecC--CCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEE
Q psy10892 69 VMAVIINSKNAVLMMQEAKS--ICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLA 130 (135)
Q Consensus 69 v~~~i~~~~~~vLL~~r~~~--~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~ 130 (135)
++++++++ ++|||+||... .++|.|+||||++++||++++||.||++||||+++.....++
T Consensus 3 v~~vi~~~-~~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~ 65 (117)
T cd04691 3 VVGVLFSD-DKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTYLC 65 (117)
T ss_pred EEEEEEEC-CEEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccceEEE
Confidence 34445554 79999998753 378999999999999999999999999999999865444443
No 20
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.66 E-value=4.6e-16 Score=108.13 Aligned_cols=63 Identities=40% Similarity=0.586 Sum_probs=52.8
Q ss_pred EEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892 69 VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET 133 (135)
Q Consensus 69 v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~ 133 (135)
+++++ ..++++||++|.+. .++.|++|||++++|||+.+||.||++||||+++....++++.+
T Consensus 3 v~~ii-~~~~~vLlv~r~~~-~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~ 65 (134)
T cd03675 3 VAAVV-ERDGRFLLVEEETD-GGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALLGIYQ 65 (134)
T ss_pred EEEEE-EECCEEEEEEEccC-CCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccceEEEEEE
Confidence 34444 44579999998765 57899999999999999999999999999999998877777643
No 21
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.66 E-value=4.6e-16 Score=106.83 Aligned_cols=60 Identities=35% Similarity=0.604 Sum_probs=49.7
Q ss_pred EEEEEEEcCCCeEEEEEeecC---CCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceE
Q psy10892 68 IVMAVIINSKNAVLMMQEAKS---ICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128 (135)
Q Consensus 68 ~v~~~i~~~~~~vLL~~r~~~---~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~ 128 (135)
+++++++++ +++||++|.+. .++|.|.||||+++.||++++||.||++||||+++....+
T Consensus 3 v~~~~~~~~-g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~ 65 (122)
T cd04682 3 VALALLIGD-GRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRI 65 (122)
T ss_pred eEEEEEEcC-CEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCccccccc
Confidence 344555555 89999999753 4789999999999999999999999999999999865433
No 22
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.65 E-value=6.8e-16 Score=107.52 Aligned_cols=63 Identities=38% Similarity=0.582 Sum_probs=53.9
Q ss_pred EEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892 70 MAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET 133 (135)
Q Consensus 70 ~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~ 133 (135)
.+++.++ +++||++|....+++.|.+|||+++.||++.+||+||++||||+.+...+++++..
T Consensus 5 ~~~i~~~-~~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~ 67 (137)
T cd03427 5 LCFIKDP-DKVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKLVGIIK 67 (137)
T ss_pred EEEEEEC-CEEEEEEecCCCCCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceEEEEEE
Confidence 3445454 79999999876578999999999999999999999999999999998888777653
No 23
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.65 E-value=8e-16 Score=105.61 Aligned_cols=67 Identities=40% Similarity=0.666 Sum_probs=58.8
Q ss_pred cEEEEEEEEcCCCeEEEEEeecCC--CCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892 66 TYIVMAVIINSKNAVLMMQEAKSI--CNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE 132 (135)
Q Consensus 66 ~~~v~~~i~~~~~~vLL~~r~~~~--~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~ 132 (135)
+.++.+++++.++++||+||.+.. .++.|.+|||++++|||+.+||+||+.||||+.+....++++.
T Consensus 2 ~~~v~~ii~~~~~~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~~~~~~ 70 (134)
T PF00293_consen 2 RRAVGVIIFNEDGKVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPLELLGLF 70 (134)
T ss_dssp EEEEEEEEEETTTEEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEEEEEEE
T ss_pred CCEEEEEEEeCCcEEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceecccccceee
Confidence 567888899988899999998764 6799999999999999999999999999999998666666554
No 24
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.65 E-value=7.6e-16 Score=106.43 Aligned_cols=64 Identities=39% Similarity=0.640 Sum_probs=54.4
Q ss_pred cEEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892 66 TYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE 132 (135)
Q Consensus 66 ~~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~ 132 (135)
...+.+++++.++++||++|.+. +.|.||||++++|||+.+||.||++||||+.+....++++.
T Consensus 7 ~~~~~~~v~~~~~~vLL~~r~~~---~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~~~~~~ 70 (132)
T cd04677 7 LVGAGVILLNEQGEVLLQKRSDT---GDWGLPGGAMELGESLEETARRELKEETGLEVEELELLGVY 70 (132)
T ss_pred ccceEEEEEeCCCCEEEEEecCC---CcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeEEEEEe
Confidence 34456667788789999988753 78999999999999999999999999999999887777654
No 25
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.65 E-value=5.5e-16 Score=107.19 Aligned_cols=64 Identities=36% Similarity=0.529 Sum_probs=54.9
Q ss_pred EEEEEEEEcC--CCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892 67 YIVMAVIINS--KNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV 131 (135)
Q Consensus 67 ~~v~~~i~~~--~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~ 131 (135)
+.+.+++++. ++++||+||.+. ++|.|.+|||+++.||++.+||.||++||||+.+...+++..
T Consensus 2 ~~~~v~~~~~~~~~~vLL~~r~~~-~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~~~~ 67 (129)
T cd04664 2 RSVLVVPYRLTGEGRVLLLRRSDK-YAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDR 67 (129)
T ss_pred cEEEEEEEEeCCCCEEEEEEeCCC-CCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEEEee
Confidence 3466777777 889999999876 789999999999999999999999999999998866655543
No 26
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.65 E-value=6.5e-16 Score=108.54 Aligned_cols=60 Identities=33% Similarity=0.585 Sum_probs=51.7
Q ss_pred cEEEEEEEEcCC-CeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceE
Q psy10892 66 TYIVMAVIINSK-NAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128 (135)
Q Consensus 66 ~~~v~~~i~~~~-~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~ 128 (135)
+..+++++++++ ++|||++|++ .|.|.+|||++++||++++||.||++||||+++.....
T Consensus 2 ~~~~~~~v~~~~~~~vLLv~r~~---~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~ 62 (138)
T cd03674 2 HFTASAFVVNPDRGKVLLTHHRK---LGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRP 62 (138)
T ss_pred cEEEEEEEEeCCCCeEEEEEEcC---CCcEECCceecCCCCCHHHHHHHHHHHHHCCCccccee
Confidence 456778888876 8999999875 47899999999999999999999999999998765544
No 27
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.63 E-value=1.3e-15 Score=103.93 Aligned_cols=56 Identities=36% Similarity=0.656 Sum_probs=47.4
Q ss_pred EEEEEEcCCCeEEEEEeecC-CCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCcccc
Q psy10892 69 VMAVIINSKNAVLMMQEAKS-ICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAP 125 (135)
Q Consensus 69 v~~~i~~~~~~vLL~~r~~~-~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~ 125 (135)
+.+++++ +++|||+||.+. .++|.|++|||++++||++.+||.||++||||+.+..
T Consensus 3 v~~vi~~-~~~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~ 59 (120)
T cd04683 3 VYVLLRR-DDEVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDP 59 (120)
T ss_pred EEEEEEE-CCEEEEEEccCCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccCh
Confidence 4455555 479999998754 3579999999999999999999999999999998873
No 28
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.63 E-value=1.4e-15 Score=103.33 Aligned_cols=62 Identities=40% Similarity=0.708 Sum_probs=53.6
Q ss_pred EEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccc-cceEEEEEe
Q psy10892 69 VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMA-PTTLLAVET 133 (135)
Q Consensus 69 v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~-~~~~~~~~~ 133 (135)
+.++++++++++||+||+.. +.|.+|||++++|||+++||.||++||||+.+. ...++++..
T Consensus 3 ~~~~i~~~~~~vLL~~r~~~---~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~ 65 (120)
T cd04680 3 ARAVVTDADGRVLLVRHTYG---PGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAELLGVYY 65 (120)
T ss_pred eEEEEECCCCeEEEEEECCC---CcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccceEEEEe
Confidence 56778888889999998753 489999999999999999999999999999998 777766643
No 29
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.63 E-value=1e-15 Score=105.64 Aligned_cols=60 Identities=40% Similarity=0.594 Sum_probs=50.9
Q ss_pred EEEEEEEcCCCeEEEEEeecC--CCCCeEEee-eEecCCCCCHHHHHHHHHHHHHCCccccceE
Q psy10892 68 IVMAVIINSKNAVLMMQEAKS--ICNGAWYLP-AGKVEEGETLEEAVKREVLEETGLEMAPTTL 128 (135)
Q Consensus 68 ~v~~~i~~~~~~vLL~~r~~~--~~~g~w~~P-gG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~ 128 (135)
++.+++++++++|||+||... .++|.|++| ||++++||++ +||+||++||||+.+....+
T Consensus 2 ~v~v~~~~~~g~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~ 64 (127)
T cd04693 2 VVHVCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSEL 64 (127)
T ss_pred eEEEEEEeCCCeEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhc
Confidence 466778888899999998743 368999998 8999999999 99999999999999875433
No 30
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.63 E-value=1.2e-15 Score=107.72 Aligned_cols=61 Identities=30% Similarity=0.417 Sum_probs=53.0
Q ss_pred cEEEEEEEEcCC---CeEEEEEeec--CCCCCeEEe-eeEecCCCCCHHHHHHHHHHHHHCCccccc
Q psy10892 66 TYIVMAVIINSK---NAVLMMQEAK--SICNGAWYL-PAGKVEEGETLEEAVKREVLEETGLEMAPT 126 (135)
Q Consensus 66 ~~~v~~~i~~~~---~~vLL~~r~~--~~~~g~w~~-PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~ 126 (135)
|.++.+++++.+ +++||++|+. ..++|.|++ |||++++|||+++||+||++||||+.+...
T Consensus 2 h~~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~ 68 (144)
T cd04692 2 HRTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSAD 68 (144)
T ss_pred ceEEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChH
Confidence 567888898877 8999999875 357899998 599999999999999999999999987543
No 31
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.62 E-value=2.5e-15 Score=102.11 Aligned_cols=60 Identities=37% Similarity=0.632 Sum_probs=50.6
Q ss_pred EEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCcccc--ceEEEE
Q psy10892 69 VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAP--TTLLAV 131 (135)
Q Consensus 69 v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~--~~~~~~ 131 (135)
+++++++.++++||+||++ .+.|.||||++++||++++||.||++||||+++.. .+.++.
T Consensus 3 ~~~~v~~~~~~vLl~~r~~---~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~ 64 (118)
T cd04690 3 AAALILVRDGRVLLVRKRG---TDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEYLGT 64 (118)
T ss_pred EEEEEEecCCeEEEEEECC---CCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhheEEEEE
Confidence 4556667778999998865 47899999999999999999999999999998877 555544
No 32
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.62 E-value=1.6e-15 Score=104.93 Aligned_cols=64 Identities=25% Similarity=0.444 Sum_probs=53.8
Q ss_pred EEEEEEEcCCCeEEEEEeecC--CCCCeEEe-eeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892 68 IVMAVIINSKNAVLMMQEAKS--ICNGAWYL-PAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV 131 (135)
Q Consensus 68 ~v~~~i~~~~~~vLL~~r~~~--~~~g~w~~-PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~ 131 (135)
++.+++++.+++|||++|... .++|.|++ |||++++||++++||+||++||||+.+.....++.
T Consensus 2 ~~~v~i~~~~~~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~~~~ 68 (126)
T cd04697 2 ATYIFVFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTPLGL 68 (126)
T ss_pred eEEEEEEcCCCeEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEEeeE
Confidence 467888899999999988742 36899998 69999999999999999999999998875554443
No 33
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.62 E-value=1.5e-15 Score=104.20 Aligned_cols=62 Identities=48% Similarity=0.775 Sum_probs=52.8
Q ss_pred EEEEEEEcCCCeEEEEEeecCC--CCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEE
Q psy10892 68 IVMAVIINSKNAVLMMQEAKSI--CNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLL 129 (135)
Q Consensus 68 ~v~~~i~~~~~~vLL~~r~~~~--~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~ 129 (135)
+++++++++++++||+||.... ++|.|+||||++++||++.+||.||++||||+++....++
T Consensus 3 ~v~~vv~~~~~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~ 66 (129)
T cd04699 3 AVAALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFLRY 66 (129)
T ss_pred eEEEEEECCCCcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEeeeee
Confidence 4566677776899999997643 5899999999999999999999999999999988776553
No 34
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.62 E-value=4.3e-15 Score=101.75 Aligned_cols=64 Identities=36% Similarity=0.638 Sum_probs=52.8
Q ss_pred EEEEEEEcCCCeEEEEEeecC-CCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892 68 IVMAVIINSKNAVLMMQEAKS-ICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV 131 (135)
Q Consensus 68 ~v~~~i~~~~~~vLL~~r~~~-~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~ 131 (135)
.+++++.++++++||+||... .++|.|+||||++++||++.+||.||+.||+|+++...+.++.
T Consensus 6 ~~~~ii~~~~~~vll~rR~~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~~~~~~ 70 (129)
T PRK10776 6 IAVGIIRNPNNEIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHATLFEK 70 (129)
T ss_pred EEEEEEECCCCEEEEEEecCCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecceEEEE
Confidence 345556677789999999764 4789999999999999999999999999999998766555443
No 35
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.62 E-value=1.1e-15 Score=110.61 Aligned_cols=66 Identities=24% Similarity=0.341 Sum_probs=57.4
Q ss_pred cccEEEEEEEEcCCCeEEEEEeecC--CCCCeEEee-eEecCCCCCHHHHHHHHHHHHHCCccccceEE
Q psy10892 64 TVTYIVMAVIINSKNAVLMMQEAKS--ICNGAWYLP-AGKVEEGETLEEAVKREVLEETGLEMAPTTLL 129 (135)
Q Consensus 64 ~~~~~v~~~i~~~~~~vLL~~r~~~--~~~g~w~~P-gG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~ 129 (135)
..+.++++++++++++|||+||+.. .++|.|.+| ||++++||++++||+||++||||+.+....++
T Consensus 28 ~~~~~v~v~i~~~~~~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~~~ 96 (165)
T cd02885 28 LLHRAFSVFLFNSKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLELV 96 (165)
T ss_pred cceeEEEEEEEcCCCcEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccchhhc
Confidence 3488888989999999999999753 478999996 89999999999999999999999998765554
No 36
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.61 E-value=3.4e-15 Score=104.09 Aligned_cols=65 Identities=29% Similarity=0.372 Sum_probs=54.7
Q ss_pred EEEEEEEEcCCCeEEEEEeecCC-CCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892 67 YIVMAVIINSKNAVLMMQEAKSI-CNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV 131 (135)
Q Consensus 67 ~~v~~~i~~~~~~vLL~~r~~~~-~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~ 131 (135)
..+.++++++++++||+++.+.. .++.|.+|||+++.||++++||.||++||||+.+.....++.
T Consensus 3 ~~v~v~~~~~~~~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~ 68 (137)
T cd03424 3 DAVAVLPYDDDGKVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEKLGS 68 (137)
T ss_pred CEEEEEEEcCCCeEEEEEeeecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEEEee
Confidence 45778888988999999876543 467999999999999999999999999999999875555543
No 37
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.61 E-value=3.7e-15 Score=103.58 Aligned_cols=60 Identities=35% Similarity=0.520 Sum_probs=50.6
Q ss_pred EEEcCCCeEEEEEeec-CCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892 72 VIINSKNAVLMMQEAK-SICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV 131 (135)
Q Consensus 72 ~i~~~~~~vLL~~r~~-~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~ 131 (135)
+++.++++|||+||.+ ..++|.|+||||++++||++.+|+.||+.||||+++....+++.
T Consensus 9 ~ii~~~~~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~~~~~~ 69 (135)
T PRK10546 9 AIIERDGKILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVGEYVAS 69 (135)
T ss_pred EEEecCCEEEEEEccCCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCccccceeEEE
Confidence 3445667999999875 45789999999999999999999999999999999877665543
No 38
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.61 E-value=3.5e-15 Score=101.89 Aligned_cols=62 Identities=39% Similarity=0.640 Sum_probs=53.0
Q ss_pred EEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892 67 YIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV 131 (135)
Q Consensus 67 ~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~ 131 (135)
..+.++++++++++||+||... |.|+||||+++.||++++||.||++||||+.+...+++++
T Consensus 3 ~~v~~ii~~~~~~vLl~~r~~~---~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~~~~ 64 (129)
T cd04676 3 PGVTAVVRDDEGRVLLIRRSDN---GLWALPGGAVEPGESPADTAVREVREETGLDVEVTGLVGI 64 (129)
T ss_pred ceEEEEEECCCCeEEEEEecCC---CcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEEEEE
Confidence 3466777788789999998764 8999999999999999999999999999998877666543
No 39
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.61 E-value=1.5e-15 Score=117.34 Aligned_cols=118 Identities=19% Similarity=0.219 Sum_probs=75.9
Q ss_pred ccccccccchhhHHHhhCCCcccCCCCCCCCCccccccc-cccCCCCCCccccccCCcccEEEEEEEEcCCCeEEEEEee
Q psy10892 8 IMANHEAIITPVLENIFSGKVCHDGEDQCDYDLTEQADF-APARGVIPESFVPRLKKTVTYIVMAVIINSKNAVLMMQEA 86 (135)
Q Consensus 8 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~vLL~~r~ 86 (135)
.++..+..+..++.+++.... .+.+|+.|.....-. ....-.++...... .+....++.+++ .+++++||+|+.
T Consensus 77 ~~~~~~~~~~~~a~~l~~w~~---~~~fC~~CG~~~~~~~~~~~~~C~~c~~~~-yp~~~paViv~V-~~~~~iLL~rr~ 151 (256)
T PRK00241 77 DLDDGLFQLLGRAVQLAEFYR---SHRFCGYCGHPMHPSKTEWAMLCPHCRERY-YPRIAPCIIVAV-RRGDEILLARHP 151 (256)
T ss_pred cCCHHHHHHHHHHHHHHHHhh---cCccccccCCCCeecCCceeEECCCCCCEE-CCCCCCEEEEEE-EeCCEEEEEEcc
Confidence 345556666777777775544 456787776543211 11111111111111 111222333444 445799999987
Q ss_pred cCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892 87 KSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV 131 (135)
Q Consensus 87 ~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~ 131 (135)
+.+ +|.|.+|||++++|||+++||.||++||||+++...++++.
T Consensus 152 ~~~-~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~~~~s 195 (256)
T PRK00241 152 RHR-NGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNLRYVGS 195 (256)
T ss_pred CCC-CCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeeeEEEEe
Confidence 654 78999999999999999999999999999999988777764
No 40
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.61 E-value=2.8e-15 Score=107.75 Aligned_cols=64 Identities=28% Similarity=0.403 Sum_probs=53.4
Q ss_pred EEEEEEEcCC--CeEEEEEeecC--CCCCeEEeeeEecCCC-CCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892 68 IVMAVIINSK--NAVLMMQEAKS--ICNGAWYLPAGKVEEG-ETLEEAVKREVLEETGLEMAPTTLLAV 131 (135)
Q Consensus 68 ~v~~~i~~~~--~~vLL~~r~~~--~~~g~w~~PgG~i~~g-Es~~~aa~REl~EE~Gl~~~~~~~~~~ 131 (135)
++.+++.+.+ ++|||+||... .++|.|+||||++++| |++++||.||++||||+++....+++.
T Consensus 4 av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~~l~~ 72 (157)
T cd03426 4 AVLVLLVEREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEVLGR 72 (157)
T ss_pred EEEEEEEeCCCceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceEEEEE
Confidence 3555566554 68999999754 3789999999999999 999999999999999999887776654
No 41
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.61 E-value=1.6e-15 Score=105.86 Aligned_cols=62 Identities=35% Similarity=0.581 Sum_probs=53.2
Q ss_pred EEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892 69 VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV 131 (135)
Q Consensus 69 v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~ 131 (135)
+.+.+.++++++||++|+..+ +|.|.+|||+++.||++++||.||++||||+++...+.++.
T Consensus 3 v~i~l~~~~~~vLL~~r~~~~-~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~~l~~ 64 (131)
T cd03429 3 VIVLVIDGGDRILLARQPRFP-PGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRYVGS 64 (131)
T ss_pred EEEEEEeCCCEEEEEEecCCC-CCcCcCCcccccCCCCHHHHHhhhhhhccCceeeeeEEEee
Confidence 455567777899999987643 78999999999999999999999999999999987776654
No 42
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.61 E-value=3.6e-15 Score=102.48 Aligned_cols=62 Identities=37% Similarity=0.582 Sum_probs=53.0
Q ss_pred EEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892 68 IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET 133 (135)
Q Consensus 68 ~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~ 133 (135)
.+.++++++ +++||+++++ .+.|.+|||++++|||+++||.||++||||+.+...+++++..
T Consensus 4 ~v~~~i~~~-~~vLL~~~~~---~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~~~~~~~~ 65 (123)
T cd04672 4 DVRAAIFKD-GKILLVREKS---DGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKLAAVDD 65 (123)
T ss_pred eEEEEEEEC-CEEEEEEEcC---CCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEeEEEEEec
Confidence 455666666 7999998876 5899999999999999999999999999999987777777653
No 43
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.61 E-value=4e-15 Score=102.84 Aligned_cols=63 Identities=37% Similarity=0.536 Sum_probs=51.7
Q ss_pred EEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892 68 IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE 132 (135)
Q Consensus 68 ~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~ 132 (135)
.+.+++++ +++|||++|.+. .++.|.+|||+++.|||+++||.||+.||||+.+...+++.+.
T Consensus 3 ~a~~iv~~-~~~vLl~~r~~~-~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~~~ 65 (128)
T cd04687 3 SAKAVIIK-NDKILLIKHHDD-GGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPLLFVR 65 (128)
T ss_pred EEEEEEEE-CCEEEEEEEEcC-CCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccCcEEEEE
Confidence 34555555 579999998643 3578999999999999999999999999999999877766654
No 44
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.60 E-value=2.1e-15 Score=103.68 Aligned_cols=61 Identities=36% Similarity=0.541 Sum_probs=51.3
Q ss_pred EEEEEEEcCC---CeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892 68 IVMAVIINSK---NAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV 131 (135)
Q Consensus 68 ~v~~~i~~~~---~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~ 131 (135)
++++++++.+ ++|||++|.+. +.|.||||++++|||+++||.||++||||+.+.....++.
T Consensus 3 ~a~~ii~~~~~~~~~vLl~~~~~~---~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~~~~~ 66 (131)
T cd03673 3 AAGGVVFRGSDGGIEVLLIHRPRG---DDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLGT 66 (131)
T ss_pred eEEEEEEEccCCCeEEEEEEcCCC---CcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecceEEE
Confidence 4556666654 79999998753 7999999999999999999999999999999887765554
No 45
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.60 E-value=5.2e-15 Score=106.37 Aligned_cols=65 Identities=29% Similarity=0.461 Sum_probs=56.7
Q ss_pred ccEEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892 65 VTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV 131 (135)
Q Consensus 65 ~~~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~ 131 (135)
.+..+++++++++++|||+||... ++.|++|+|++++||++++||.||++||||+.+...++++.
T Consensus 7 ~~~~v~~~i~~~~g~vLL~~r~~~--~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~~~~ 71 (156)
T PRK00714 7 YRPNVGIILLNRQGQVFWGRRIGQ--GHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEILAE 71 (156)
T ss_pred CCCeEEEEEEecCCEEEEEEEcCC--CCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceEEEEE
Confidence 455678889998899999998753 48999999999999999999999999999999877776664
No 46
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.60 E-value=7.2e-15 Score=104.49 Aligned_cols=65 Identities=38% Similarity=0.559 Sum_probs=55.4
Q ss_pred EEEEEEEEcCCCeEEEEEeecC--CCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccc----eEEEE
Q psy10892 67 YIVMAVIINSKNAVLMMQEAKS--ICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPT----TLLAV 131 (135)
Q Consensus 67 ~~v~~~i~~~~~~vLL~~r~~~--~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~----~~~~~ 131 (135)
.++++++++.++++||+||... .++|.|.+|||++++||++++||+||++||+|+.+... +++++
T Consensus 2 ~~v~viv~~~~~~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~ 72 (143)
T cd04694 2 VGVAVLLQSSDQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLGL 72 (143)
T ss_pred cEEEEEEEcCCCEEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCccccccceeEEee
Confidence 3567777888899999999753 57899999999999999999999999999999988753 45554
No 47
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.59 E-value=7e-15 Score=101.14 Aligned_cols=61 Identities=33% Similarity=0.520 Sum_probs=51.2
Q ss_pred EEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892 68 IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE 132 (135)
Q Consensus 68 ~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~ 132 (135)
.+.+++++ ++++||+++.. .+.|.+|||++++||++.+||.||++||||+++...+++++.
T Consensus 3 ~~~~vi~~-~~~vLlv~~~~---~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~ 63 (125)
T cd04689 3 RARAIVRA-GNKVLLARVIG---QPHYFLPGGHVEPGETAENALRRELQEELGVAVSDGRFLGAI 63 (125)
T ss_pred EEEEEEEe-CCEEEEEEecC---CCCEECCCCcCCCCCCHHHHHHHHHHHHhCceeeccEEEEEE
Confidence 35555554 57999999864 468999999999999999999999999999999888777654
No 48
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.59 E-value=1.4e-14 Score=99.45 Aligned_cols=65 Identities=29% Similarity=0.423 Sum_probs=53.7
Q ss_pred EEEEEEEEcCCCeEEEEEeec-CCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892 67 YIVMAVIINSKNAVLMMQEAK-SICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV 131 (135)
Q Consensus 67 ~~v~~~i~~~~~~vLL~~r~~-~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~ 131 (135)
.+++++++++++++||+||.. +.++|.|+||||+++.||++++++.||+.||+|+.+...+.++.
T Consensus 5 ~~~~~ii~~~~~~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~~~~~~ 70 (128)
T TIGR00586 5 QIAVGIIRNENGEIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSEFEKL 70 (128)
T ss_pred EEEEEEEECCCCEEEEEEEeCCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceeeeEEEE
Confidence 345555667778999999975 45889999999999999999999999999999998776655443
No 49
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.58 E-value=4.1e-15 Score=105.85 Aligned_cols=55 Identities=35% Similarity=0.636 Sum_probs=46.8
Q ss_pred EEEEEEEcCC-CeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCcccc
Q psy10892 68 IVMAVIINSK-NAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAP 125 (135)
Q Consensus 68 ~v~~~i~~~~-~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~ 125 (135)
++++++++++ ++|||+|+... +.|+||||++++|||+.+||.||++||||+.+..
T Consensus 3 ~~gaii~~~~~~~vLLvr~~~~---~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~ 58 (145)
T cd03672 3 VYGAIILNEDLDKVLLVKGWKS---KSWSFPKGKINKDEDDHDCAIREVYEETGFDISK 58 (145)
T ss_pred eeEEEEEeCCCCEEEEEEecCC---CCEECCCccCCCCcCHHHHHHHHHHHhhCcccee
Confidence 4566677754 69999998643 4899999999999999999999999999998765
No 50
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.58 E-value=1e-14 Score=107.19 Aligned_cols=68 Identities=22% Similarity=0.282 Sum_probs=55.2
Q ss_pred CcccEEEEEEEEcCCCeEEEEEeecC--CCCCeEE-eeeEecCCCCCHHHHHHHHHHHHHCCccccceEEE
Q psy10892 63 KTVTYIVMAVIINSKNAVLMMQEAKS--ICNGAWY-LPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLA 130 (135)
Q Consensus 63 ~~~~~~v~~~i~~~~~~vLL~~r~~~--~~~g~w~-~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~ 130 (135)
.-.+.++.+++++++++|||++|... .++|.|. +|||++++|||+++||.|||+||||+.+.....++
T Consensus 34 ~~~h~~~~v~v~~~~g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~~~~~ 104 (180)
T PRK15393 34 CLRHRATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPFAEHG 104 (180)
T ss_pred CCceEEEEEEEECCCCeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCccceece
Confidence 34667778888898899999988642 3577775 89999999999999999999999999866544433
No 51
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.57 E-value=1.6e-14 Score=99.49 Aligned_cols=59 Identities=37% Similarity=0.529 Sum_probs=49.1
Q ss_pred EEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892 70 MAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE 132 (135)
Q Consensus 70 ~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~ 132 (135)
.++++++ ++|||+|+.+ .+.|.+|||++++||++.+||.||++||||+.+....++++.
T Consensus 5 ~~vi~~~-~~vLl~~~~~---~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~ 63 (126)
T cd04688 5 AAIIIHN-GKLLVQKNPD---ETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLGVV 63 (126)
T ss_pred EEEEEEC-CEEEEEEeCC---CCeEECCCccccCCCCHHHHHHHHHHHHhCCceecceeeEEE
Confidence 3334443 4999998765 579999999999999999999999999999998887777654
No 52
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.57 E-value=1.3e-14 Score=100.33 Aligned_cols=62 Identities=27% Similarity=0.389 Sum_probs=50.6
Q ss_pred EEEEEEcC---CCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccc-eEEEEEe
Q psy10892 69 VMAVIINS---KNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPT-TLLAVET 133 (135)
Q Consensus 69 v~~~i~~~---~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~-~~~~~~~ 133 (135)
+++++++. ..++||+++.+. +.|.+|||+++.|||+.+||+||++||||+.+... +.+++..
T Consensus 3 ~g~v~~~~~~~~~~vLLv~~~~~---~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l~~~~ 68 (122)
T cd04666 3 AGAIPYRETGGEVEVLLVTSRRT---GRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLGRFE 68 (122)
T ss_pred EEEEEEEEcCCceEEEEEEecCC---CeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceEEEEEE
Confidence 44455443 268999988653 88999999999999999999999999999998777 7777654
No 53
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.56 E-value=1.2e-14 Score=107.06 Aligned_cols=64 Identities=25% Similarity=0.448 Sum_probs=55.3
Q ss_pred CCcccEEEEEEEEcCCCeEEEEEeec--CCCCCeEEee-eEecCCCCCHHHHHHHHHHHHHCCcccc
Q psy10892 62 KKTVTYIVMAVIINSKNAVLMMQEAK--SICNGAWYLP-AGKVEEGETLEEAVKREVLEETGLEMAP 125 (135)
Q Consensus 62 ~~~~~~~v~~~i~~~~~~vLL~~r~~--~~~~g~w~~P-gG~i~~gEs~~~aa~REl~EE~Gl~~~~ 125 (135)
....+.++.+++++++++|||+||+. ..++|.|.+| ||++++||++++||+||++||||+++..
T Consensus 30 ~~~~h~av~v~i~~~~g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~ 96 (184)
T PRK03759 30 DTPLHLAFSCYLFDADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITD 96 (184)
T ss_pred CCCeeeEEEEEEEcCCCeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccc
Confidence 34578888898999889999999864 3478999976 8999999999999999999999998864
No 54
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.56 E-value=2.4e-14 Score=96.81 Aligned_cols=63 Identities=43% Similarity=0.665 Sum_probs=53.0
Q ss_pred EEEEEEcCCCeEEEEEeecCC-CCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892 69 VMAVIINSKNAVLMMQEAKSI-CNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV 131 (135)
Q Consensus 69 v~~~i~~~~~~vLL~~r~~~~-~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~ 131 (135)
+.++++++++++||++|+... ++|.|.||+|+++.+|+++++|.||+.||+|+++...+.++.
T Consensus 4 ~~~~i~~~~~~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~~~~~~ 67 (124)
T cd03425 4 VAAIIIDDDGRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGELLAT 67 (124)
T ss_pred EEEEEECCCCEEEEEEeCCCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEeccceEEE
Confidence 445566777899999987544 799999999999999999999999999999998876555544
No 55
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.55 E-value=2.2e-14 Score=97.06 Aligned_cols=57 Identities=39% Similarity=0.567 Sum_probs=47.8
Q ss_pred EEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892 71 AVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV 131 (135)
Q Consensus 71 ~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~ 131 (135)
++|...++++||++|.+ |.|.+|||++++||++.+||.||++||||+.+.....++.
T Consensus 4 ~~i~~~~~~vLlv~r~~----~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~ 60 (112)
T cd04667 4 TVICRRGGRVLLVRKSG----SRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLYLFH 60 (112)
T ss_pred EEEEecCCEEEEEEcCC----CcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceEEEEE
Confidence 44445567999999864 7899999999999999999999999999998876655543
No 56
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.55 E-value=1.6e-14 Score=100.46 Aligned_cols=52 Identities=37% Similarity=0.591 Sum_probs=46.0
Q ss_pred EcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccc
Q psy10892 74 INSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPT 126 (135)
Q Consensus 74 ~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~ 126 (135)
.+.++++||++|... ++|.|.+|||++++|||+.+||.||++||||+++...
T Consensus 10 ~~~~~~vLl~~r~~~-~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~ 61 (131)
T cd04695 10 LDKETKVLLLKRVKT-LGGFWCHVAGGVEAGETAWQAALRELKEETGISLPEL 61 (131)
T ss_pred cCCCCEEEEEEecCC-CCCcEECCcccccCCCCHHHHHHHHHHHHhCCCcccc
Confidence 356679999999865 6799999999999999999999999999999987643
No 57
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.55 E-value=4.8e-14 Score=103.87 Aligned_cols=65 Identities=31% Similarity=0.368 Sum_probs=53.8
Q ss_pred EEEEEEEcCCCeEEEEEeecC-CCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892 68 IVMAVIINSKNAVLMMQEAKS-ICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE 132 (135)
Q Consensus 68 ~v~~~i~~~~~~vLL~~r~~~-~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~ 132 (135)
++.++.+++++++||+++... .....|+||+|.+|+||++++||+||++||||+.+...+.++..
T Consensus 49 ~v~v~~~~~~~~vlLvrq~r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~l~~~ 114 (185)
T PRK11762 49 AVMIVPILDDDTLLLIREYAAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQLTFLKEL 114 (185)
T ss_pred EEEEEEEeCCCEEEEEEeecCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEE
Confidence 345555666778999998654 35678999999999999999999999999999999888777654
No 58
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.55 E-value=3.2e-14 Score=99.18 Aligned_cols=60 Identities=30% Similarity=0.479 Sum_probs=48.4
Q ss_pred EEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCcc-ccceEEEEE
Q psy10892 69 VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEM-APTTLLAVE 132 (135)
Q Consensus 69 v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~-~~~~~~~~~ 132 (135)
+.++++++ ++|||+++.+ .+.|.||||++++||++.+||.||++||||+.+ .....+++.
T Consensus 3 ~~~ii~~~-~~vLLv~~~~---~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~l~~~ 63 (131)
T cd04686 3 VRAIILQG-DKILLLYTKR---YGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKFGTY 63 (131)
T ss_pred EEEEEEEC-CEEEEEEEcC---CCcEECccccCCCCCCHHHHHHHHHHHHHCCcccccceEEEEE
Confidence 45556654 7999999865 257999999999999999999999999999987 445555543
No 59
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.54 E-value=3.3e-14 Score=113.84 Aligned_cols=62 Identities=37% Similarity=0.562 Sum_probs=52.1
Q ss_pred EEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEE
Q psy10892 67 YIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLL 129 (135)
Q Consensus 67 ~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~ 129 (135)
..+.++++. +++|||++|.+.+++|.|.+|||++++||++++||.||++||||+++....+.
T Consensus 204 vtv~avv~~-~g~VLLvrR~~~p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l~ 265 (340)
T PRK05379 204 VTVDAVVVQ-SGHVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVLR 265 (340)
T ss_pred eEEEEEEEE-CCEEEEEEecCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCcccccccc
Confidence 455555554 56999999987777899999999999999999999999999999987655443
No 60
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.54 E-value=6.3e-14 Score=96.79 Aligned_cols=55 Identities=36% Similarity=0.582 Sum_probs=44.9
Q ss_pred EEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccc
Q psy10892 71 AVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPT 126 (135)
Q Consensus 71 ~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~ 126 (135)
+++...+ ++||++|...++.|.|+||||++++||++++||.||++||+|+.+...
T Consensus 9 ~vl~~~~-~~lL~~r~~~~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~~~ 63 (118)
T cd04674 9 ALLPVDD-GLLVIRRGIEPGRGKLALPGGFIELGETWQDAVARELLEETGVAVDPA 63 (118)
T ss_pred EEEEECC-CEEEEEeecCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCccccc
Confidence 3343443 577777776666899999999999999999999999999999988643
No 61
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.53 E-value=5.6e-14 Score=98.65 Aligned_cols=62 Identities=29% Similarity=0.527 Sum_probs=53.0
Q ss_pred EEEEEEEcCCCeEEEEEeecCC--CCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCcc-ccceEE
Q psy10892 68 IVMAVIINSKNAVLMMQEAKSI--CNGAWYLPAGKVEEGETLEEAVKREVLEETGLEM-APTTLL 129 (135)
Q Consensus 68 ~v~~~i~~~~~~vLL~~r~~~~--~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~-~~~~~~ 129 (135)
.+.+++++.+++|||+++.+.. +++.|.+|||+++.||++.+||.||++||||+.+ ....++
T Consensus 2 ~~~~~i~~~~g~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~~~ 66 (133)
T cd04685 2 AARVVLLDPDDRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGPPV 66 (133)
T ss_pred eEEEEEEcCCCeEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCccccccceE
Confidence 4678888989999999987643 6789999999999999999999999999999988 444444
No 62
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.53 E-value=1.4e-14 Score=99.91 Aligned_cols=58 Identities=36% Similarity=0.505 Sum_probs=48.2
Q ss_pred EEEEEEEcCCC---eEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEE
Q psy10892 68 IVMAVIINSKN---AVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLL 129 (135)
Q Consensus 68 ~v~~~i~~~~~---~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~ 129 (135)
.+++++++.++ ++||+||++ +.|.+|||++++|||+.+||.||++||||+.+....++
T Consensus 4 ~~g~vi~~~~~~~~~vLl~~~~~----~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~ 64 (130)
T cd03428 4 SAGAIIYRRLNNEIEYLLLQASY----GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIV 64 (130)
T ss_pred EEEEEEEEecCCCceEEEEEccC----CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhhh
Confidence 34555555433 799998875 78999999999999999999999999999998876654
No 63
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.53 E-value=2.8e-14 Score=102.72 Aligned_cols=65 Identities=22% Similarity=0.301 Sum_probs=55.9
Q ss_pred cCCcccEEEEEEEEcCCCeEEEEEeecC--CCCCeEEee-eEecCCCCCHHHHHHHHHHHHHCCccccce
Q psy10892 61 LKKTVTYIVMAVIINSKNAVLMMQEAKS--ICNGAWYLP-AGKVEEGETLEEAVKREVLEETGLEMAPTT 127 (135)
Q Consensus 61 ~~~~~~~~v~~~i~~~~~~vLL~~r~~~--~~~g~w~~P-gG~i~~gEs~~~aa~REl~EE~Gl~~~~~~ 127 (135)
.....|.++++++++.+++|||+||+.. .++|.|++| ||+++.|| .+||+||++||||+.+...+
T Consensus 22 ~~g~~h~~v~v~v~~~~g~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~ 89 (158)
T TIGR02150 22 QETPLHRAFSVFLFNEEGQLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDVP 89 (158)
T ss_pred cCCCeEEEEEEEEEcCCCeEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccccc
Confidence 3466888899999999999999998753 479999987 79999999 49999999999999887654
No 64
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.51 E-value=8e-14 Score=93.38 Aligned_cols=63 Identities=52% Similarity=0.731 Sum_probs=53.3
Q ss_pred EEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892 68 IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV 131 (135)
Q Consensus 68 ~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~ 131 (135)
++++++++.++++||++|... ++|.|.+|+|+++.||++.++|.||+.||+|+.+......++
T Consensus 2 ~~~~i~~~~~~~ill~kr~~~-~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~~~~~~ 64 (123)
T cd02883 2 AVGAVILDEDGRVLLVRRADS-PGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRLLGV 64 (123)
T ss_pred ceEEEEECCCCCEEEEEEcCC-CCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceeeeEEEE
Confidence 356677787789999999876 789999999999999999999999999999998865444443
No 65
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.47 E-value=1.1e-13 Score=96.75 Aligned_cols=49 Identities=35% Similarity=0.597 Sum_probs=42.4
Q ss_pred CCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCcccc
Q psy10892 76 SKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAP 125 (135)
Q Consensus 76 ~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~ 125 (135)
++.++||+|+.++ ..|.|.||+|++++|||+.+||.||++||||+.+..
T Consensus 11 ~~~~~Llvk~~~~-~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~ 59 (132)
T cd04661 11 DDTLVLLVQQKVG-SQNHWILPQGKREEGETLRQTAERTLKELCGNNLKA 59 (132)
T ss_pred cCcEEEEEEeecC-CCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceE
Confidence 3458999998753 268999999999999999999999999999997654
No 66
>KOG3084|consensus
Probab=99.47 E-value=1.3e-13 Score=107.94 Aligned_cols=65 Identities=32% Similarity=0.532 Sum_probs=50.4
Q ss_pred ccEEEEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEE
Q psy10892 65 VTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLL 129 (135)
Q Consensus 65 ~~~~v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~ 129 (135)
...+|..++++++++.+|..|..+..+|.|..++|++|+|||+++|++||++||+|++++.+.+.
T Consensus 186 ~dPvVIm~li~~d~~~~LL~R~~r~~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~~ 250 (345)
T KOG3084|consen 186 TDPVVIMLLIDHDGKHALLGRQKRYPPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVISYV 250 (345)
T ss_pred CCCeEEEEEEcCCCCEeeeecccCCCCchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEeee
Confidence 33445555667666544444444445789999999999999999999999999999999887754
No 67
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.46 E-value=4.1e-13 Score=92.64 Aligned_cols=58 Identities=38% Similarity=0.682 Sum_probs=48.8
Q ss_pred EEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892 71 AVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET 133 (135)
Q Consensus 71 ~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~ 133 (135)
+++++ ++++||+++. .+.|++|||+++.||++++||.||++||+|+.+...+.++...
T Consensus 5 vi~~~-~~~vLl~~~~----~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~~~l~~~~ 62 (118)
T cd04665 5 VICFY-DDGLLLVRHK----DRGWEFPGGHVEPGETIEEAARREVWEETGAELGSLTLVGYYQ 62 (118)
T ss_pred EEEEE-CCEEEEEEeC----CCEEECCccccCCCCCHHHHHHHHHHHHHCCccCceEEEEEEE
Confidence 44444 4699999876 3579999999999999999999999999999998888777654
No 68
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.46 E-value=4e-13 Score=99.71 Aligned_cols=58 Identities=21% Similarity=0.308 Sum_probs=48.2
Q ss_pred cCCCeEEEEEeecC--CCCCeEEeeeEecCCC-CCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892 75 NSKNAVLMMQEAKS--ICNGAWYLPAGKVEEG-ETLEEAVKREVLEETGLEMAPTTLLAVE 132 (135)
Q Consensus 75 ~~~~~vLL~~r~~~--~~~g~w~~PgG~i~~g-Es~~~aa~REl~EE~Gl~~~~~~~~~~~ 132 (135)
+.++.+||+||+.. .+.|.|+||||++|++ |++++||+||++||||+.....++++..
T Consensus 41 ~~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~lg~l 101 (190)
T PRK10707 41 RPQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEVIGVL 101 (190)
T ss_pred CCCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEEEEEe
Confidence 34468999998743 3679999999999985 6899999999999999999888777653
No 69
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.44 E-value=4.6e-13 Score=98.03 Aligned_cols=65 Identities=26% Similarity=0.258 Sum_probs=53.4
Q ss_pred CCcccEEEEEE--EEcCC--CeEEEEEeec--CCCCCeEE-eeeEecCCCCCHHHHHHHHHHHHHCCccccc
Q psy10892 62 KKTVTYIVMAV--IINSK--NAVLMMQEAK--SICNGAWY-LPAGKVEEGETLEEAVKREVLEETGLEMAPT 126 (135)
Q Consensus 62 ~~~~~~~v~~~--i~~~~--~~vLL~~r~~--~~~~g~w~-~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~ 126 (135)
..-.+.++.++ +.+.+ ++++++||+. ..+||.|. +|+|++++||++.+||+||++||||+++...
T Consensus 28 ~g~~h~~v~~~~~~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~ 99 (180)
T cd03676 28 FGLVTYGVHLNGYVRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLV 99 (180)
T ss_pred CCceEEEEEEEEEEEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 45567777754 55665 7999999974 45899995 9999999999999999999999999987753
No 70
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.43 E-value=8.6e-13 Score=92.03 Aligned_cols=47 Identities=38% Similarity=0.523 Sum_probs=40.7
Q ss_pred CeEEEEEeecC----CCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccc
Q psy10892 78 NAVLMMQEAKS----ICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMA 124 (135)
Q Consensus 78 ~~vLL~~r~~~----~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~ 124 (135)
.+|||++|... ...+.|++|||+++.||++.+||+||++||||+++.
T Consensus 15 ~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~ 65 (126)
T cd04662 15 IEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD 65 (126)
T ss_pred EEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce
Confidence 47999987432 346899999999999999999999999999999876
No 71
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=99.43 E-value=4e-13 Score=104.17 Aligned_cols=118 Identities=20% Similarity=0.228 Sum_probs=76.3
Q ss_pred cccccccchhhHHHhhCCCcccCCCCCCCCCccccccccccCCCCCCccccccCCcccEEEEEEEEcCCCeEEEEEeecC
Q psy10892 9 MANHEAIITPVLENIFSGKVCHDGEDQCDYDLTEQADFAPARGVIPESFVPRLKKTVTYIVMAVIINSKNAVLMMQEAKS 88 (135)
Q Consensus 9 ~~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~vLL~~r~~~ 88 (135)
|+....++-++..+++..... +.+|+.|.....-..-.....-+.......+.+..++.+++++.+ ++||.++.+.
T Consensus 90 ~~~~~~~~~~~a~~l~~w~~~---~RFCg~CG~~~~~~~~g~~~~C~~cg~~~fPR~dP~vIv~v~~~~-~ilLa~~~~h 165 (279)
T COG2816 90 LDEGLFGLAARAVQLLEWYRS---HRFCGRCGTKTYPREGGWARVCPKCGHEHFPRIDPCVIVAVIRGD-EILLARHPRH 165 (279)
T ss_pred CCHHHHHHHHHHHHHHHHHhh---CcCCCCCCCcCccccCceeeeCCCCCCccCCCCCCeEEEEEecCC-ceeecCCCCC
Confidence 445555666667777665443 457777755433222211111111111112223334445555554 5888887765
Q ss_pred CCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892 89 ICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV 131 (135)
Q Consensus 89 ~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~ 131 (135)
. +|.|++-+|+|++|||+++|+.||++||+|+.++.+++++.
T Consensus 166 ~-~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vrY~~S 207 (279)
T COG2816 166 F-PGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNVRYVGS 207 (279)
T ss_pred C-CcceeeeeecccCCccHHHHHHHHHHHhhCeEEeeeeEEec
Confidence 5 89999999999999999999999999999999999988864
No 72
>PRK08999 hypothetical protein; Provisional
Probab=99.41 E-value=1.1e-12 Score=103.19 Aligned_cols=65 Identities=34% Similarity=0.592 Sum_probs=53.8
Q ss_pred cEEEEEEEEcCCCeEEEEEeec-CCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEE
Q psy10892 66 TYIVMAVIINSKNAVLMMQEAK-SICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLA 130 (135)
Q Consensus 66 ~~~v~~~i~~~~~~vLL~~r~~-~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~ 130 (135)
...++++++++++++||+||.. ..|+|.|+||+|++++||++.+|+.||++||+|+.+.....++
T Consensus 5 ~~~~~~vi~~~~~~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~l~ 70 (312)
T PRK08999 5 IHVAAGVIRDADGRILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAARPLI 70 (312)
T ss_pred eEEEEEEEECCCCeEEEEEecCCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecceeEE
Confidence 4455566677778999999864 5689999999999999999999999999999999876554443
No 73
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.40 E-value=7.7e-13 Score=97.79 Aligned_cols=64 Identities=25% Similarity=0.390 Sum_probs=50.9
Q ss_pred EEEEEEEc-CCCeEEEEEeecCC------CCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892 68 IVMAVIIN-SKNAVLMMQEAKSI------CNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV 131 (135)
Q Consensus 68 ~v~~~i~~-~~~~vLL~~r~~~~------~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~ 131 (135)
++++++++ +++++||+++.+.+ .+..|++|+|++++||++++||+||++||||+.+...+.++.
T Consensus 46 ~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~~~~~ 116 (185)
T TIGR00052 46 AAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLRKLLS 116 (185)
T ss_pred eEEEEEEECCCCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecceEEEEE
Confidence 45555555 45799999876532 256899999999999999999999999999999987665543
No 74
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.38 E-value=2.6e-12 Score=92.65 Aligned_cols=59 Identities=31% Similarity=0.414 Sum_probs=48.0
Q ss_pred EEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEe
Q psy10892 70 MAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET 133 (135)
Q Consensus 70 ~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~ 133 (135)
.++...+ +++||+++.. ..|++|||++++||++++||.||++||||+.+...+.++...
T Consensus 28 ~ii~~~~-~~~LL~~~~~----~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~~lg~~~ 86 (156)
T TIGR02705 28 LVIPRYK-DQWLLTEHKR----RGLEFPGGKVEPGETSKEAAIREVMEETGAIVKELHYIGQYE 86 (156)
T ss_pred EEEEEEC-CEEEEEEEcC----CcEECCceecCCCCCHHHHHHHHHHHHhCcEeeeeEEEEEEE
Confidence 3333444 4888888764 349999999999999999999999999999998888877653
No 75
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.36 E-value=4.7e-12 Score=94.84 Aligned_cols=63 Identities=24% Similarity=0.436 Sum_probs=50.2
Q ss_pred EEEEEEEcC-CCeEEEEEeecCCC------CCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEE
Q psy10892 68 IVMAVIINS-KNAVLMMQEAKSIC------NGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLA 130 (135)
Q Consensus 68 ~v~~~i~~~-~~~vLL~~r~~~~~------~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~ 130 (135)
+++++.+++ +++|+|++..+.+- +-.|++|+|.+|+||++++||.|||.||||+.+...+.++
T Consensus 51 ~V~il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~~l~ 120 (202)
T PRK10729 51 AAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTKPVL 120 (202)
T ss_pred eEEEEEEECCCCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEEEEE
Confidence 455555654 47999998866442 2489999999999999999999999999999987765554
No 76
>PLN02709 nudix hydrolase
Probab=99.34 E-value=4e-12 Score=96.29 Aligned_cols=55 Identities=27% Similarity=0.353 Sum_probs=48.4
Q ss_pred CeEEEEEeecC--CCCCeEEeeeEecCCC-CCHHHHHHHHHHHHHCCccccceEEEEE
Q psy10892 78 NAVLMMQEAKS--ICNGAWYLPAGKVEEG-ETLEEAVKREVLEETGLEMAPTTLLAVE 132 (135)
Q Consensus 78 ~~vLL~~r~~~--~~~g~w~~PgG~i~~g-Es~~~aa~REl~EE~Gl~~~~~~~~~~~ 132 (135)
.+|||++|+.. .++|.|+||||++|++ +++.+||+||+.||+|+.....+++|..
T Consensus 51 ~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L 108 (222)
T PLN02709 51 LRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVL 108 (222)
T ss_pred eEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeec
Confidence 48999999864 5799999999999996 5799999999999999998888888754
No 77
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=99.29 E-value=1.4e-11 Score=84.04 Aligned_cols=52 Identities=48% Similarity=0.686 Sum_probs=43.6
Q ss_pred CeEEEEEeecCCCCCeEEeeeEecCCCCCHHH-HHHHHHHHHHCCccc--cceEEEE
Q psy10892 78 NAVLMMQEAKSICNGAWYLPAGKVEEGETLEE-AVKREVLEETGLEMA--PTTLLAV 131 (135)
Q Consensus 78 ~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~-aa~REl~EE~Gl~~~--~~~~~~~ 131 (135)
.++|+.+|.... +.|.||||++++||++.+ ||.||++||||+.+. ....++.
T Consensus 24 ~~vl~~~~~~~~--~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~~~~~~~~~ 78 (161)
T COG0494 24 GEVLLAQRRDDG--GLWELPGGKVEPGEELPEEAAARELEEETGLRVKDERLELLGE 78 (161)
T ss_pred CEEeEEEccccC--CceecCCcccCCCCchHHHHHHHHHHHHhCCeeeeecceeeee
Confidence 689888887643 699999999999998888 999999999999888 4444443
No 78
>PLN02791 Nudix hydrolase homolog
Probab=99.24 E-value=3.1e-11 Score=104.84 Aligned_cols=66 Identities=23% Similarity=0.356 Sum_probs=57.1
Q ss_pred cCCcccEEEEEEEEcC-CCeEEEEEeec--CCCCCeEEe-eeEecCCCCCHHHHHHHHHHHHHCCccccc
Q psy10892 61 LKKTVTYIVMAVIINS-KNAVLMMQEAK--SICNGAWYL-PAGKVEEGETLEEAVKREVLEETGLEMAPT 126 (135)
Q Consensus 61 ~~~~~~~~v~~~i~~~-~~~vLL~~r~~--~~~~g~w~~-PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~ 126 (135)
.....|.++.+++++. ++++||+||+. ..+||.|.+ ||||++.||+..+||+||+.||+|+.+...
T Consensus 27 ~~Gl~HrAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~~ 96 (770)
T PLN02791 27 RDGDYHRAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPKD 96 (770)
T ss_pred cCCCceEEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCChh
Confidence 3456888999999996 68999999974 458999997 799999999999999999999999986543
No 79
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=99.23 E-value=2.9e-11 Score=84.42 Aligned_cols=51 Identities=33% Similarity=0.466 Sum_probs=40.1
Q ss_pred EEEEEEcCCC--eEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCcc
Q psy10892 69 VMAVIINSKN--AVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEM 123 (135)
Q Consensus 69 v~~~i~~~~~--~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~ 123 (135)
+.+++...++ ++++.+... +.|++|||++++||++.+||.||++||||+.+
T Consensus 3 ~~~~~~~~~~~~~ll~~r~~~----~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~ 55 (126)
T cd04663 3 CPAVLRRNGEVLELLVFEHPL----AGFQIVKGTVEPGETPEAAALRELQEESGLPS 55 (126)
T ss_pred EEEEEEeCCceEEEEEEEcCC----CcEECCCccCCCCCCHHHHHHHHHHHHHCCee
Confidence 3444554443 666665543 45999999999999999999999999999986
No 80
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.21 E-value=8e-11 Score=87.49 Aligned_cols=63 Identities=21% Similarity=0.295 Sum_probs=48.9
Q ss_pred EEEEEEEcC-CCeEEEEEeecCC-------CCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892 68 IVMAVIINS-KNAVLMMQEAKSI-------CNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV 131 (135)
Q Consensus 68 ~v~~~i~~~-~~~vLL~~r~~~~-------~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~ 131 (135)
++++++.+. +++++|+++.+.+ .+-.|++|+|.+|+| ++++||+||+.||||+.+...+.++.
T Consensus 47 ~v~Vl~~~~~~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~~~l~~ 117 (191)
T PRK15009 47 GATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEVRKLFE 117 (191)
T ss_pred EEEEEEEECCCCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceEEEeeE
Confidence 345555554 6799999987654 234799999999976 69999999999999999887665543
No 81
>PLN03143 nudix hydrolase; Provisional
Probab=99.16 E-value=1.5e-10 Score=90.93 Aligned_cols=53 Identities=21% Similarity=0.334 Sum_probs=42.2
Q ss_pred eEEEEEeecCC-CCCeEEeeeEecCC-CCCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892 79 AVLMMQEAKSI-CNGAWYLPAGKVEE-GETLEEAVKREVLEETGLEMAPTTLLAV 131 (135)
Q Consensus 79 ~vLL~~r~~~~-~~g~w~~PgG~i~~-gEs~~~aa~REl~EE~Gl~~~~~~~~~~ 131 (135)
+++|+++.+.+ ..-.|+||+|.+|+ +|++++||.||++||||+.+...+++.+
T Consensus 144 ~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a~~lv~L 198 (291)
T PLN03143 144 YAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLKLEDMVDL 198 (291)
T ss_pred EEEEEEeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccccceEEEe
Confidence 38888887643 34589999999998 4899999999999999998765444433
No 82
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=99.16 E-value=4.2e-11 Score=93.53 Aligned_cols=99 Identities=13% Similarity=0.213 Sum_probs=77.4
Q ss_pred CccccccccccccccchhhHHHhhCCCcccCCCCCCCCCccccccccccCCCCC--CccccccCCcccEEEEEEEEcCCC
Q psy10892 1 MYRYSKNIMANHEAIITPVLENIFSGKVCHDGEDQCDYDLTEQADFAPARGVIP--ESFVPRLKKTVTYIVMAVIINSKN 78 (135)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~v~~~i~~~~~ 78 (135)
||.+++.+++.+++...+++.+.||...|.+..|.|.-|+....|.+...+... |...++..........+++.+.++
T Consensus 160 l~~~~~~~lp~~~~~~~n~alm~lG~~vC~~~~P~C~~Cpl~~~C~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 239 (275)
T TIGR01084 160 LWTLAESLLPKADPEAFNQALMDLGAMICTRKKPKCDLCPLQDFCLAYQQGTWEEYPVKKPKAAPPERTTYFLVLQNYDG 239 (275)
T ss_pred HHHHHHHHCChhhHHHHHHHHHHHhHHHcCCCCCCCCCCCChhhCHHHHcCCHhhcCCCCCCCCCCeEEEEEEEEEeCCC
Confidence 466788999999999999999999999999999999999999999998887554 333333333333344444556678
Q ss_pred eEEEEEeec-CCCCCeEEeeeE
Q psy10892 79 AVLMMQEAK-SICNGAWYLPAG 99 (135)
Q Consensus 79 ~vLL~~r~~-~~~~g~w~~PgG 99 (135)
++||.||.. +.++|+|+||..
T Consensus 240 ~~~~~~r~~~~~~~gl~~~p~~ 261 (275)
T TIGR01084 240 EVLLEQRPEKGLWGGLYCFPQF 261 (275)
T ss_pred eEEEEeCCCCchhhccccCCCC
Confidence 999999865 568999999973
No 83
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=99.15 E-value=2.1e-10 Score=88.27 Aligned_cols=64 Identities=20% Similarity=0.296 Sum_probs=52.1
Q ss_pred CCcccEEEEEEEEcCCCeEEEEEeec--CCCCCeEEee-eEecCCCCC-----------------HHHHHHHHHHHHHCC
Q psy10892 62 KKTVTYIVMAVIINSKNAVLMMQEAK--SICNGAWYLP-AGKVEEGET-----------------LEEAVKREVLEETGL 121 (135)
Q Consensus 62 ~~~~~~~v~~~i~~~~~~vLL~~r~~--~~~~g~w~~P-gG~i~~gEs-----------------~~~aa~REl~EE~Gl 121 (135)
..-.|+++.++|++.++++||+||+. ..+||.|... +|++..||+ ..+||+||++||+|+
T Consensus 52 ~gl~Hra~~v~i~n~~g~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI 131 (247)
T PLN02552 52 RGLLHRAFSVFLFNSKYELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGI 131 (247)
T ss_pred CCceEEEEEEEEEcCCCeEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCC
Confidence 45688999999999999999999974 4489999855 566665532 678999999999999
Q ss_pred cccc
Q psy10892 122 EMAP 125 (135)
Q Consensus 122 ~~~~ 125 (135)
.+..
T Consensus 132 ~~~~ 135 (247)
T PLN02552 132 PAED 135 (247)
T ss_pred Cccc
Confidence 8553
No 84
>KOG2839|consensus
Probab=99.14 E-value=1.4e-10 Score=81.85 Aligned_cols=65 Identities=29% Similarity=0.447 Sum_probs=52.5
Q ss_pred cccEEEEEEEEcCCC---eEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEE
Q psy10892 64 TVTYIVMAVIINSKN---AVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLA 130 (135)
Q Consensus 64 ~~~~~v~~~i~~~~~---~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~ 130 (135)
..+.+++|+.+..+. +|||+.-+++ +..|.+|+|++++||+..+||.||+.||.|+.-...++++
T Consensus 7 G~r~vagCi~~r~~~~~ieVLlvsSs~~--~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~~~~ 74 (145)
T KOG2839|consen 7 GFRLVAGCICYRSDKEKIEVLLVSSSKK--PHRWIVPKGGWEPDESVEEAALRETWEEAGVKGKLGRLLG 74 (145)
T ss_pred CcEEEEEeeeeeecCcceEEEEEecCCC--CCCccCCCCCCCCCCCHHHHHHHHHHHHhCceeeeecccc
Confidence 455667777665433 8999987764 4679999999999999999999999999999887776444
No 85
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=99.08 E-value=3.2e-10 Score=83.98 Aligned_cols=42 Identities=29% Similarity=0.586 Sum_probs=37.6
Q ss_pred eEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCcc
Q psy10892 79 AVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEM 123 (135)
Q Consensus 79 ~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~ 123 (135)
++|+++|+. .|.|.+|||++++||++.+||.||++||||+.+
T Consensus 50 ~vLl~~r~~---~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~l 91 (186)
T cd03670 50 QFVAIKRPD---SGEWAIPGGMVDPGEKISATLKREFGEEALNSL 91 (186)
T ss_pred EEEEEEeCC---CCcCcCCeeeccCCCCHHHHHHHHHHHHHcccc
Confidence 788888865 589999999999999999999999999997653
No 86
>PRK10880 adenine DNA glycosylase; Provisional
Probab=99.07 E-value=1.3e-10 Score=93.53 Aligned_cols=114 Identities=13% Similarity=0.179 Sum_probs=83.4
Q ss_pred CccccccccccccccchhhHHHhhCCCcccCCCCCCCCCccccccccccCCCCC--CccccccCCcccEEEEEEEEcCCC
Q psy10892 1 MYRYSKNIMANHEAIITPVLENIFSGKVCHDGEDQCDYDLTEQADFAPARGVIP--ESFVPRLKKTVTYIVMAVIINSKN 78 (135)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~v~~~i~~~~~ 78 (135)
||.+++.+++.......+++.+.+|...|.+..|.|..|+....|.+...+... |...++....... ..++++.+++
T Consensus 164 l~~~~~~l~p~~~~~~~nqalm~lGa~vC~p~~P~C~~Cpl~~~C~~~~~~~~~~~P~k~~k~~~~~~~-~~~~~~~~~~ 242 (350)
T PRK10880 164 LWQLSEQVTPAVGVERFNQAMMDLGAMVCTRSKPKCELCPLQNGCIAYANHSWALYPGKKPKQTLPERT-GYFLLLQHGD 242 (350)
T ss_pred HHHHHHHhCChhHHHHHHHHHHHhhHHhccCCCCCCCCCccHhhhHHHHcCCHhhCCCCCCCCCCCeEE-EEEEEEEECC
Confidence 366778888989999999999999999999999999999999999999888654 3333333333333 3334445567
Q ss_pred eEEEEEeec-CCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCc
Q psy10892 79 AVLMMQEAK-SICNGAWYLPAGKVEEGETLEEAVKREVLEETGLE 122 (135)
Q Consensus 79 ~vLL~~r~~-~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~ 122 (135)
++||.||.. +.|+|+|+||.. +..+ ..++..|+.|+.
T Consensus 243 ~~~l~~r~~~gl~~gl~~fP~~--~~~~-----~~~~~~~~~~~~ 280 (350)
T PRK10880 243 EVWLEQRPPSGLWGGLFCFPQF--ADEE-----ELRQWLAQRGIA 280 (350)
T ss_pred EEEEEECCccChhhccccCCCC--cchh-----hHHHHHHhcCCc
Confidence 999999974 569999999963 2111 234555677764
No 87
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=98.93 E-value=3.9e-10 Score=89.82 Aligned_cols=102 Identities=14% Similarity=0.218 Sum_probs=83.7
Q ss_pred Ccccccc-ccccccccchhhHHHhhCCCcccCCCCCCCCCccccccccccCCCCC--CccccccCCcccEEEEEEEEcCC
Q psy10892 1 MYRYSKN-IMANHEAIITPVLENIFSGKVCHDGEDQCDYDLTEQADFAPARGVIP--ESFVPRLKKTVTYIVMAVIINSK 77 (135)
Q Consensus 1 ~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~v~~~i~~~~ 77 (135)
||.++++ |.++.++.-.+|..|-||+..|+..+|.|..|+...+|.+...+... +...++.... ....+.++.+.+
T Consensus 168 ~~~~~~~ll~p~~~~~~fnqammdlGA~ICt~~~P~C~~CPl~~~c~a~~~g~~~~~P~k~~k~~~~-~~~~~~~~~~~~ 246 (342)
T COG1194 168 LWELAEQLLTPDRRPGDFNQAMMDLGATICTAKKPKCSLCPLRDNCAAYRNGTPEKYPVKKPKKKLP-RRFAAFLILNRD 246 (342)
T ss_pred HHHHHHHhcCCCCChHHHHHHHHHhhhHhhcCCCCCCCcCcchHHHHHHHcCCcccCCCcCcccccc-hheeeEEEEccC
Confidence 4778888 44555589999999999999999999999999999999999999875 4555555555 666777788888
Q ss_pred CeEEEEEeec-CCCCCeEEeeeEecCC
Q psy10892 78 NAVLMMQEAK-SICNGAWYLPAGKVEE 103 (135)
Q Consensus 78 ~~vLL~~r~~-~~~~g~w~~PgG~i~~ 103 (135)
+.++|.+|.. +.++|.|+||....+.
T Consensus 247 ~~~~l~kr~~~gl~~gl~~fP~~e~~~ 273 (342)
T COG1194 247 GEVLLEKRPEKGLLGGLWCFPQFEDEA 273 (342)
T ss_pred cchhhhhCcccCceecccccccccccc
Confidence 8999999874 5689999999876654
No 88
>PRK13910 DNA glycosylase MutY; Provisional
Probab=98.91 E-value=1.1e-09 Score=86.03 Aligned_cols=94 Identities=9% Similarity=0.076 Sum_probs=71.1
Q ss_pred ccccccccccccccchhhHHHhhCCCcccCCCCCCCCCccccccccccCCCCCCccccccCCcccEEEEEEEEcCCCeEE
Q psy10892 2 YRYSKNIMANHEAIITPVLENIFSGKVCHDGEDQCDYDLTEQADFAPARGVIPESFVPRLKKTVTYIVMAVIINSKNAVL 81 (135)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~vL 81 (135)
|.+.+.+++.......+++.+.+|...|.+ .|.|..|+....|.+...+.+.+. +++..........++++ .++++|
T Consensus 124 ~~~~~~~l~~~~~~~~nqaLm~~Ga~iC~~-~P~C~~CPl~~~C~~~~~~~~~~~-~~kk~~~~~~~~~~~~~-~~~~~l 200 (289)
T PRK13910 124 QIKANDFLNLNESFNHNQALIDLGALICSP-KPKCAICPLNPYCLGKNNPEKHTL-KKKQEIVQEERYLGVVI-QNNQIA 200 (289)
T ss_pred HHHHHHhCCccchHHHHHHHHHHhHHHcCC-CCCCCCCcChhhhhhhhcCCcccc-CCCCCCCceEEEEEEEE-ECCEEE
Confidence 345566777777888999999999999999 699999999999999999888754 22222222333333444 456999
Q ss_pred EEEeecCCCCCeEEeee
Q psy10892 82 MMQEAKSICNGAWYLPA 98 (135)
Q Consensus 82 L~~r~~~~~~g~w~~Pg 98 (135)
|.||..+.|+|+|+||.
T Consensus 201 l~kr~~~l~~gl~~fP~ 217 (289)
T PRK13910 201 LEKIEQKLYLGMHHFPN 217 (289)
T ss_pred EEECCCchhcccccCCC
Confidence 99987667999999996
No 89
>KOG3041|consensus
Probab=98.82 E-value=1.2e-08 Score=75.52 Aligned_cols=46 Identities=30% Similarity=0.458 Sum_probs=39.8
Q ss_pred CeEEEEEeecCCC-CCeEEeeeEecCCCCCHHHHHHHHHHHHHCCcc
Q psy10892 78 NAVLMMQEAKSIC-NGAWYLPAGKVEEGETLEEAVKREVLEETGLEM 123 (135)
Q Consensus 78 ~~vLL~~r~~~~~-~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~ 123 (135)
..++|++..+.+- +-..++|+|-||.||+++.||+|||+||||+.-
T Consensus 88 ~~ivL~kQfRpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~g 134 (225)
T KOG3041|consen 88 PYIVLVKQFRPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYKG 134 (225)
T ss_pred EEEEEEEeecCCCCcEEEEcccccccCCCchHHHHHHHHHHHhCccc
Confidence 4788888877663 447889999999999999999999999999863
No 90
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=98.81 E-value=5e-09 Score=76.24 Aligned_cols=66 Identities=21% Similarity=0.334 Sum_probs=58.5
Q ss_pred ccCCc-ccEEEEEEEEcCCCeEEEEEee--cCCCCCeEE-eeeEecCCCCCHHHHHHHHHHHHHCCcccc
Q psy10892 60 RLKKT-VTYIVMAVIINSKNAVLMMQEA--KSICNGAWY-LPAGKVEEGETLEEAVKREVLEETGLEMAP 125 (135)
Q Consensus 60 ~~~~~-~~~~v~~~i~~~~~~vLL~~r~--~~~~~g~w~-~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~ 125 (135)
..... .|++..++++|.+|++||+||+ +..|++.|. ..+||.-+||+..+|++|.+.+|+|+++..
T Consensus 26 t~d~~~LHrAFS~~lFne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~ 95 (185)
T COG1443 26 TGDTPRLHRAFSSFLFNERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQ 95 (185)
T ss_pred ccccHHHHhhhheeEECCCCceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcc
Confidence 34444 6899999999999999999997 466999999 778999999999999999999999998873
No 91
>KOG3069|consensus
Probab=98.80 E-value=7.8e-09 Score=78.35 Aligned_cols=54 Identities=22% Similarity=0.348 Sum_probs=45.3
Q ss_pred CeEEEEEeec--CCCCCeEEeeeEecCCC-CCHHHHHHHHHHHHHCCccccceEEEE
Q psy10892 78 NAVLMMQEAK--SICNGAWYLPAGKVEEG-ETLEEAVKREVLEETGLEMAPTTLLAV 131 (135)
Q Consensus 78 ~~vLL~~r~~--~~~~g~w~~PgG~i~~g-Es~~~aa~REl~EE~Gl~~~~~~~~~~ 131 (135)
.+|||.||+. ..++|.-+||||+.|+. ++-..+|.||..||+|++....+++|.
T Consensus 58 l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~g~ 114 (246)
T KOG3069|consen 58 LSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVLGA 114 (246)
T ss_pred eEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhhhhh
Confidence 5899999985 45899999999999985 577889999999999998876665553
No 92
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=98.69 E-value=1.1e-07 Score=63.70 Aligned_cols=51 Identities=24% Similarity=0.369 Sum_probs=42.1
Q ss_pred EEEEEEcCCCeEEEEEeec-CCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHC
Q psy10892 69 VMAVIINSKNAVLMMQEAK-SICNGAWYLPAGKVEEGETLEEAVKREVLEETG 120 (135)
Q Consensus 69 v~~~i~~~~~~vLL~~r~~-~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~G 120 (135)
+++++ .+++++||.||.. +.|+|+|+||+|.++.+++.+++..+++.++.+
T Consensus 6 ~~~ii-~~~~~~ll~kR~~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~ 57 (118)
T cd03431 6 AVVVI-RNDGRVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALR 57 (118)
T ss_pred EEEEE-ecCCeEEEEECCCCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhC
Confidence 33444 4467999999964 569999999999999999999999999988876
No 93
>KOG0648|consensus
Probab=98.65 E-value=3e-08 Score=77.62 Aligned_cols=65 Identities=40% Similarity=0.597 Sum_probs=53.8
Q ss_pred ccEEEEEEEEcCCCeEEEEEeecCC--CCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEE
Q psy10892 65 VTYIVMAVIINSKNAVLMMQEAKSI--CNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLL 129 (135)
Q Consensus 65 ~~~~v~~~i~~~~~~vLL~~r~~~~--~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~ 129 (135)
....++.+++|.+++||+++..+.. ..|.|-+|+|.|+++|++.++|.||++||||++....+++
T Consensus 114 h~vgvg~~V~n~~~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ef~eVl 180 (295)
T KOG0648|consen 114 HRVGVGAFVLNKKKEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTEFVEVL 180 (295)
T ss_pred hheeeeeeEecCCceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcchhhhhHH
Confidence 4456778888988899999875433 5789999999999999999999999999999866554443
No 94
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=98.19 E-value=2.9e-06 Score=59.15 Aligned_cols=46 Identities=33% Similarity=0.565 Sum_probs=39.3
Q ss_pred eEEEEEeecCCC----CCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccc
Q psy10892 79 AVLMMQEAKSIC----NGAWYLPAGKVEEGETLEEAVKREVLEETGLEMA 124 (135)
Q Consensus 79 ~vLL~~r~~~~~----~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~ 124 (135)
.|||++...+.| .|.|++|.|....||++..||+||..||+|+.+.
T Consensus 19 ~VLLvHPGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vd 68 (161)
T COG4119 19 DVLLVHPGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVD 68 (161)
T ss_pred EEEEecCCCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeec
Confidence 677777654443 4799999999999999999999999999999774
No 95
>PLN02839 nudix hydrolase
Probab=98.16 E-value=6.2e-06 Score=66.66 Aligned_cols=49 Identities=27% Similarity=0.338 Sum_probs=42.4
Q ss_pred CCCeEEEEEee--cCCCCCeEE-eeeEecCCCCCHHHHHHHHHHHHHCCccc
Q psy10892 76 SKNAVLMMQEA--KSICNGAWY-LPAGKVEEGETLEEAVKREVLEETGLEMA 124 (135)
Q Consensus 76 ~~~~vLL~~r~--~~~~~g~w~-~PgG~i~~gEs~~~aa~REl~EE~Gl~~~ 124 (135)
.+.++++.||+ +..++|.|. +.+|.+..||++.++++||..||.|+...
T Consensus 216 g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~ 267 (372)
T PLN02839 216 GQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKA 267 (372)
T ss_pred CCeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHH
Confidence 33578888887 355999999 88999999999999999999999999754
No 96
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=97.97 E-value=7.8e-06 Score=55.26 Aligned_cols=55 Identities=25% Similarity=0.468 Sum_probs=33.7
Q ss_pred EEEEcCCCeEEEEEeec-CCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccc
Q psy10892 71 AVIINSKNAVLMMQEAK-SICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPT 126 (135)
Q Consensus 71 ~~i~~~~~~vLL~~r~~-~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~ 126 (135)
+++++.++++||.||.. +.|+|+|+||.-..+...+ .+.+.+.+.+..|+.+...
T Consensus 2 ~~i~~~~~~~Ll~kRp~~gll~GLwefP~~e~~~~~~-~~~l~~~~~~~~~~~~~~~ 57 (114)
T PF14815_consen 2 LLIIRSQGRVLLEKRPEKGLLAGLWEFPLIESDEEDD-EEELEEWLEEQLGLSIRSV 57 (114)
T ss_dssp EEEEETTSEEEEEE--SSSTTTT-EE--EEE-SSS-C-HHHHHHHTCCSSS-EEEE-
T ss_pred EEEEEeCCEEEEEECCCCChhhcCcccCEeCccCCCC-HHHHHHHHHHHcCCChhhh
Confidence 56778889999999985 6699999999988874444 4555555666777765543
No 97
>KOG2457|consensus
Probab=97.56 E-value=5.4e-05 Score=61.68 Aligned_cols=50 Identities=6% Similarity=-0.009 Sum_probs=47.5
Q ss_pred CccccccccccccccchhhHHHhhCCCcccCCCCCCCCCccccccccccC
Q psy10892 1 MYRYSKNIMANHEAIITPVLENIFSGKVCHDGEDQCDYDLTEQADFAPAR 50 (135)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~a~~~ 50 (135)
+|.++.+++++.-++.+||+.|.||++.|+++.|.|..|+..+.|.|+..
T Consensus 261 ~wkLA~qLVDP~RPGDFNQalMELGAt~CTpq~P~CS~CPvss~CrA~q~ 310 (555)
T KOG2457|consen 261 SWKLAAQLVDPSRPGDFNQALMELGATLCTPQKPSCSSCPVSSQCRAFQL 310 (555)
T ss_pred HHHHHHHhcCCCCCCcHHHHHHHhcCeeccCCCCCcCCCCcHHHHHHHhH
Confidence 48899999999999999999999999999999999999999999999873
No 98
>KOG4195|consensus
Probab=97.55 E-value=7.5e-05 Score=56.57 Aligned_cols=38 Identities=34% Similarity=0.696 Sum_probs=33.2
Q ss_pred eEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHH
Q psy10892 79 AVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEET 119 (135)
Q Consensus 79 ~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~ 119 (135)
+++.+||.+ .|.|.+|||.+|+||.+-.+++||+.||.
T Consensus 140 e~vavkr~d---~~~WAiPGGmvdpGE~vs~tLkRef~eEa 177 (275)
T KOG4195|consen 140 EFVAVKRPD---NGEWAIPGGMVDPGEKVSATLKREFGEEA 177 (275)
T ss_pred EEEEEecCC---CCcccCCCCcCCchhhhhHHHHHHHHHHH
Confidence 456666665 58999999999999999999999999996
No 99
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=96.62 E-value=0.018 Score=42.72 Aligned_cols=52 Identities=25% Similarity=0.418 Sum_probs=36.0
Q ss_pred EEEEEEEcCCC--eEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCcc
Q psy10892 68 IVMAVIINSKN--AVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEM 123 (135)
Q Consensus 68 ~v~~~i~~~~~--~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~ 123 (135)
+.+++++...+ +|||.|... ..|-+|||...+||+..+...|.|.+-+|..-
T Consensus 46 Ve~Vllvh~h~~PHvLLLq~~~----~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~~ 99 (188)
T PF13869_consen 46 VEGVLLVHEHGHPHVLLLQIGN----TFFKLPGGRLRPGEDEIEGLKRKLTEKLSPED 99 (188)
T ss_dssp EEEEEEEEETTEEEEEEEEETT----TEEE-SEEE--TT--HHHHHHHHHHHHHB-SS
T ss_pred EEEEEEEecCCCcEEEEEeccC----ccccCCccEeCCCCChhHHHHHHHHHHcCCCc
Confidence 34455555444 799999654 48999999999999999999999999999754
No 100
>KOG2937|consensus
Probab=96.49 E-value=0.0005 Score=54.77 Aligned_cols=54 Identities=30% Similarity=0.570 Sum_probs=43.3
Q ss_pred EEEEEEcCC-CeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCcccc
Q psy10892 69 VMAVIINSK-NAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAP 125 (135)
Q Consensus 69 v~~~i~~~~-~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~ 125 (135)
.+..+.+.. .++||++.... ..|.||.|++..+|+-.++|.||+.||+|.+.+.
T Consensus 85 ~ga~ild~~~sr~llv~g~qa---~sw~fprgK~~kdesd~~caiReV~eetgfD~sk 139 (348)
T KOG2937|consen 85 RGAIILDEKRSRCLLVKGWQA---SSWSFPRGKISKDESDSDCAIREVTEETGFDYSK 139 (348)
T ss_pred chHhhhhhhhhhhheeeceec---ccccccCccccccchhhhcchhcccchhhcCHHH
Confidence 344555544 48888876543 3599999999999999999999999999998763
No 101
>KOG0142|consensus
Probab=96.14 E-value=0.0023 Score=47.97 Aligned_cols=64 Identities=23% Similarity=0.356 Sum_probs=48.4
Q ss_pred CCcccEEEEEEEEcCCCeEEEEEeecC--CCCCeEE-eeeEec-------CC--CCCHHHHHHHHHHHHHCCcccc
Q psy10892 62 KKTVTYIVMAVIINSKNAVLMMQEAKS--ICNGAWY-LPAGKV-------EE--GETLEEAVKREVLEETGLEMAP 125 (135)
Q Consensus 62 ~~~~~~~v~~~i~~~~~~vLL~~r~~~--~~~g~w~-~PgG~i-------~~--gEs~~~aa~REl~EE~Gl~~~~ 125 (135)
+...+++..+++++.++++||+||+.. .+++.|+ ..++|. +. +..+..||+|.|.-|+|+....
T Consensus 48 kglLHRaFSVFlFns~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~ 123 (225)
T KOG0142|consen 48 KGLLHRAFSVFLFNSKNELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEE 123 (225)
T ss_pred hhhhhheeeEEEecCcchHHHhhhccccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCccc
Confidence 346888999999999999999999853 3788887 333332 11 2267889999999999996654
No 102
>KOG4432|consensus
Probab=96.03 E-value=0.008 Score=47.69 Aligned_cols=42 Identities=31% Similarity=0.363 Sum_probs=37.8
Q ss_pred eEEeeeEecCCCCCHHHHHHHHHHHHHCCccccceEEEEEeC
Q psy10892 93 AWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVETA 134 (135)
Q Consensus 93 ~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~~~~~~~~ 134 (135)
..++.+|-|+++.|+.+.|..|+.||.|.++...+++-|.++
T Consensus 80 tielc~g~idke~s~~eia~eev~eecgy~v~~d~l~hv~~~ 121 (405)
T KOG4432|consen 80 TIELCAGLIDKELSPREIASEEVAEECGYRVDPDDLIHVITF 121 (405)
T ss_pred eeeeeccccccccCHHHHhHHHHHHHhCCcCChhHceEEEEE
Confidence 456779999999999999999999999999999988887764
No 103
>KOG4313|consensus
Probab=95.74 E-value=0.0087 Score=46.29 Aligned_cols=46 Identities=20% Similarity=0.279 Sum_probs=41.5
Q ss_pred eEEEEEeec--CCCCCeEE-eeeEecCCCCCHHHHHHHHHHHHHCCccc
Q psy10892 79 AVLMMQEAK--SICNGAWY-LPAGKVEEGETLEEAVKREVLEETGLEMA 124 (135)
Q Consensus 79 ~vLL~~r~~--~~~~g~w~-~PgG~i~~gEs~~~aa~REl~EE~Gl~~~ 124 (135)
.+++.||++ ..|+|.|. ..+|.+.-|-++.++++.|..||..++..
T Consensus 149 ~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~ 197 (306)
T KOG4313|consen 149 CIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSD 197 (306)
T ss_pred EEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCchh
Confidence 688888874 66999999 88999999999999999999999999873
No 104
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=94.90 E-value=0.15 Score=37.25 Aligned_cols=61 Identities=25% Similarity=0.434 Sum_probs=40.2
Q ss_pred EEEEcCCCeEEEEEeecCC----CCCeEEe-eeEecCCCC---CHHHH----HHHHHHHHHCCc---cccceEEEEE
Q psy10892 71 AVIINSKNAVLMMQEAKSI----CNGAWYL-PAGKVEEGE---TLEEA----VKREVLEETGLE---MAPTTLLAVE 132 (135)
Q Consensus 71 ~~i~~~~~~vLL~~r~~~~----~~g~w~~-PgG~i~~gE---s~~~a----a~REl~EE~Gl~---~~~~~~~~~~ 132 (135)
++|.+. ++||+.+|-... ..+.+++ .|||+..++ |..+. +.||+.||.++. ....+++|+-
T Consensus 66 vvi~~e-devliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~lGlI 141 (203)
T COG4112 66 VVIMDE-DEVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEFLGLI 141 (203)
T ss_pred EEEecC-CEEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhheeeeee
Confidence 444444 599999986422 3456663 489998765 44443 669999999997 4445566653
No 105
>KOG1689|consensus
Probab=94.28 E-value=0.15 Score=37.46 Aligned_cols=49 Identities=27% Similarity=0.474 Sum_probs=39.0
Q ss_pred EEEEEEEcCC--CeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHC
Q psy10892 68 IVMAVIINSK--NAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETG 120 (135)
Q Consensus 68 ~v~~~i~~~~--~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~G 120 (135)
+-+++++... .+|||.|-.+ ..+-+|||..++||+-.+...|-+-|-+|
T Consensus 72 vegvlivheH~lPHvLLLQig~----tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lg 122 (221)
T KOG1689|consen 72 VEGVLIVHEHNLPHVLLLQIGN----TFFKLPGGRLRPGEDEADGLKRLLTESLG 122 (221)
T ss_pred eeeeEEEeecCCCeEEEEeeCC----EEEecCCCccCCCcchhHHHHHHHHHHhc
Confidence 3455555444 5888888653 46789999999999999999999999999
No 106
>KOG4432|consensus
Probab=89.14 E-value=0.5 Score=37.75 Aligned_cols=35 Identities=29% Similarity=0.403 Sum_probs=29.4
Q ss_pred eEEeeeEecCCCCCHHHHHHHHHHHHHCCccccce
Q psy10892 93 AWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTT 127 (135)
Q Consensus 93 ~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~~ 127 (135)
..++..|.++..-|..+-|.||..||+|.++...+
T Consensus 285 TlELcag~Vd~p~s~~e~a~~e~veecGYdlp~~~ 319 (405)
T KOG4432|consen 285 TLELCAGRVDDPFSDPEKAARESVEECGYDLPEDS 319 (405)
T ss_pred eeeeecccCCCCcccHHHHHHHHHHHhCCCCCHHH
Confidence 45566888988889999999999999999988653
No 107
>KOG4548|consensus
Probab=82.88 E-value=2.4 Score=33.01 Aligned_cols=42 Identities=17% Similarity=0.355 Sum_probs=33.3
Q ss_pred EEEEEeecCCCCCeEEeeeEec-CCCCCHHHHHHHHHHHHHCCc
Q psy10892 80 VLMMQEAKSICNGAWYLPAGKV-EEGETLEEAVKREVLEETGLE 122 (135)
Q Consensus 80 vLL~~r~~~~~~g~w~~PgG~i-~~gEs~~~aa~REl~EE~Gl~ 122 (135)
+||+++.-+. .+.|.||.+.. ++++++.-+|.|+|++-.|-.
T Consensus 141 yLLV~~k~g~-~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~ 183 (263)
T KOG4548|consen 141 YLLVKRKFGK-SSVWIFPNRQFSSSEKTLRGHAERDLKVLSGEN 183 (263)
T ss_pred EEEEeeccCc-cceeeCCCcccCCccchHHHHHHHHHHHHhcch
Confidence 5677754211 46899999999 899999999999999988743
No 108
>PF14443 DBC1: DBC1
Probab=82.17 E-value=1.5 Score=30.57 Aligned_cols=35 Identities=20% Similarity=0.399 Sum_probs=26.6
Q ss_pred CCeEEee--eEecCCC-CCHHHHHHHHHHHHHCCcccc
Q psy10892 91 NGAWYLP--AGKVEEG-ETLEEAVKREVLEETGLEMAP 125 (135)
Q Consensus 91 ~g~w~~P--gG~i~~g-Es~~~aa~REl~EE~Gl~~~~ 125 (135)
+|.|.-- ||..+.+ ..+..+|+|-+++-||++.+.
T Consensus 23 GG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS~ 60 (126)
T PF14443_consen 23 GGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLSN 60 (126)
T ss_pred CCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchhh
Confidence 6788743 5555553 377899999999999998864
No 109
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=69.96 E-value=5 Score=22.35 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=12.0
Q ss_pred eeeEecCCCCCHHHHHHHHHHHHH
Q psy10892 96 LPAGKVEEGETLEEAVKREVLEET 119 (135)
Q Consensus 96 ~PgG~i~~gEs~~~aa~REl~EE~ 119 (135)
.-||...+|--+...+.||+-||+
T Consensus 13 ClggLasPgPvp~~~alkELIeEL 36 (43)
T PF03487_consen 13 CLGGLASPGPVPSSTALKELIEEL 36 (43)
T ss_dssp ----------S-HHHHHHHHHHHH
T ss_pred HhcccCCCCCCCchHHHHHHHHHH
Confidence 447778888888899999999996
No 110
>KOG2457|consensus
Probab=57.05 E-value=16 Score=30.55 Aligned_cols=44 Identities=25% Similarity=0.234 Sum_probs=28.0
Q ss_pred CeEEEEEeec-CCCCCeEEeeeEec-CCCCCH-HHHHH-HHHHHHHCC
Q psy10892 78 NAVLMMQEAK-SICNGAWYLPAGKV-EEGETL-EEAVK-REVLEETGL 121 (135)
Q Consensus 78 ~~vLL~~r~~-~~~~g~w~~PgG~i-~~gEs~-~~aa~-REl~EE~Gl 121 (135)
..||+.+|.. +...|+|.||.--. +++|-. ..|-. |.+.-+++.
T Consensus 387 ~~ilv~~rp~~gllagLw~fpti~~~e~se~~~~~a~~q~~v~~w~~~ 434 (555)
T KOG2457|consen 387 NAILVYLRPAFGLLAGLWKFPTIVSRELSEFVHIFAHIQRKVYVWLLV 434 (555)
T ss_pred ceeEEEeccchhHHHHhhhcCceeccCcchHHHHHHHHHHHHHHHhcc
Confidence 4788888865 34679999997544 666633 23333 336666664
No 111
>KOG0648|consensus
Probab=42.64 E-value=2.2 Score=33.89 Aligned_cols=51 Identities=22% Similarity=0.297 Sum_probs=39.6
Q ss_pred EcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCccccc
Q psy10892 74 INSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPT 126 (135)
Q Consensus 74 ~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~~ 126 (135)
.++.+..++++..+.+.. .|.. .|+..-++++.+++.|++.++++......
T Consensus 38 ~~~~d~~~f~~~l~~Sl~-~W~~-~Gr~~iwl~l~~~~~~lV~~a~~~gf~~h 88 (295)
T KOG0648|consen 38 PEPMDEKLFIEELRASLQ-KWYL-QGRKGIWLKLPEELARLVEEAAKYGFDYH 88 (295)
T ss_pred cCCCCHHHHHHHHHHHHH-HHHH-ccCcccceechHHHHhHHHHHHhcCcEEe
Confidence 455556666665544444 7988 99999999999999999999999876543
No 112
>PRK10702 endonuclease III; Provisional
Probab=40.70 E-value=14 Score=27.88 Aligned_cols=31 Identities=10% Similarity=0.015 Sum_probs=25.8
Q ss_pred chhhHHHhhCCCcccCCCCCCCCCccccccc
Q psy10892 16 ITPVLENIFSGKVCHDGEDQCDYDLTEQADF 46 (135)
Q Consensus 16 ~~~~~~~~l~~~~~~~~~~~c~~~~~~~~~~ 46 (135)
-...+...+|.+.|....|.|.-|+....|.
T Consensus 174 ~~~~~li~~Gr~~C~~~~P~C~~Cpl~~~C~ 204 (211)
T PRK10702 174 DCHHWLILHGRYTCIARKPRCGSCIIEDLCE 204 (211)
T ss_pred HHHHHHHHHhHHHcCCCCCCCCCCcChhhcC
Confidence 3445556699999999999999999998884
No 113
>PF12860 PAS_7: PAS fold
Probab=33.37 E-value=18 Score=23.45 Aligned_cols=41 Identities=10% Similarity=0.266 Sum_probs=28.6
Q ss_pred EEEEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHH
Q psy10892 69 VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVK 112 (135)
Q Consensus 69 v~~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~ 112 (135)
.++++++.++++++.-++. ...|.+|...+.+|-+..+.+.
T Consensus 6 ~Gv~v~D~~~rl~~~N~~~---~~l~~~~~~~~~~G~~~~~l~~ 46 (115)
T PF12860_consen 6 QGVAVFDSDGRLVFWNQRF---RELFGLPPEMLRPGASFRDLLR 46 (115)
T ss_pred ceEEEEcCCCeEEeEcHHH---HHHhCCCHHHhcCCCCHHHHHH
Confidence 5678899999998875442 3578888777777766555443
No 114
>PF10576 EndIII_4Fe-2S: Iron-sulfur binding domain of endonuclease III; InterPro: IPR003651 Endonuclease III (4.2.99.18 from EC) is a DNA repair enzyme which removes a number of damaged pyrimidines from DNA via its glycosylase activity and also cleaves the phosphodiester backbone at apurinic / apyrimidinic sites via a beta-elimination mechanism [, ]. The structurally related DNA glycosylase MutY recognises and excises the mutational intermediate 8-oxoguanine-adenine mispair []. The 3-D structures of Escherichia coli endonuclease III [] and catalytic domain of MutY [] have been determined. The structures contain two all-alpha domains: a sequence-continuous, six-helix domain (residues 22-132) and a Greek-key, four-helix domain formed by one N-terminal and three C-terminal helices (residues 1-21 and 133-211) together with the [Fe4S4] cluster. The cluster is bound entirely within the C-terminal loop by four cysteine residues with a ligation pattern Cys-(Xaa)6-Cys-(Xaa)2-Cys-(Xaa)5-Cys which is distinct from all other known Fe4S4 proteins. This structural motif is referred to as a [Fe4S4] cluster loop (FCL) []. Two DNA-binding motifs have been proposed, one at either end of the interdomain groove: the helix-hairpin-helix (HhH) and FCL motifs. The primary role of the iron-sulphur cluster appears to involve positioning conserved basic residues for interaction with the DNA phosphate backbone by forming the loop of the FCL motif [, ]. The iron-sulphur cluster loop (FCL) is also found in DNA-(apurinic or apyrimidinic site) lyase, a subfamily of endonuclease III. The enzyme has both apurinic and apyrimidinic endonuclease activity and a DNA N-glycosylase activity. It cuts damaged DNA at cytosines, thymines and guanines, and acts on the damaged strand 5' of the damaged site. The enzyme binds a 4Fe-4S cluster which is not important for the catalytic activity, but is probably involved in the alignment of the enzyme along the DNA strand.; GO: 0004519 endonuclease activity, 0051539 4 iron, 4 sulfur cluster binding; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A 2ABK_A 1KG7_A 1KG2_A 1MUN_A ....
Probab=31.52 E-value=26 Score=15.72 Aligned_cols=17 Identities=12% Similarity=0.239 Sum_probs=7.8
Q ss_pred ccCCCCCCCCCcccccc
Q psy10892 29 CHDGEDQCDYDLTEQAD 45 (135)
Q Consensus 29 ~~~~~~~c~~~~~~~~~ 45 (135)
|+...+.|..|+....|
T Consensus 1 Ctar~P~C~~Cpl~~~C 17 (17)
T PF10576_consen 1 CTARKPKCEECPLADYC 17 (17)
T ss_dssp S-SSS--GGG-TTGGG-
T ss_pred CcCCCCccccCCCcccC
Confidence 34566778877776544
No 115
>PF09505 Dimeth_Pyl: Dimethylamine methyltransferase (Dimeth_PyL); InterPro: IPR012653 This family consists of dimethylamine methyltransferases from the genus Methanosarcina. It is found in three nearly identical copies in each of Methanosarcina acetivorans, Methanosarcina barkeri, and Methanosarcina mazei. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with trimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates dimethylamine, leaving monomethylamine, and methylates the prosthetic group of the small corrinoid protein MtbC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.; GO: 0008168 methyltransferase activity, 0015948 methanogenesis
Probab=30.35 E-value=31 Score=28.20 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=18.3
Q ss_pred ecCCCCCHHHHHHHHHHHHHCCcc
Q psy10892 100 KVEEGETLEEAVKREVLEETGLEM 123 (135)
Q Consensus 100 ~i~~gEs~~~aa~REl~EE~Gl~~ 123 (135)
.++..+-..+.+.||++||+++-+
T Consensus 408 ~V~~~dLsDe~~MrelReeL~IG~ 431 (466)
T PF09505_consen 408 GVEPMDLSDEYVMRELREELNIGV 431 (466)
T ss_pred CCChhhcccHHHHHHHHHhcCcce
Confidence 355566667899999999998743
No 116
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=29.77 E-value=43 Score=20.23 Aligned_cols=14 Identities=36% Similarity=0.864 Sum_probs=10.9
Q ss_pred CeEEeeeEecCCCC
Q psy10892 92 GAWYLPAGKVEEGE 105 (135)
Q Consensus 92 g~w~~PgG~i~~gE 105 (135)
.-|-+|||.+-.+-
T Consensus 22 ~GWl~Pgg~vi~NP 35 (60)
T PF07026_consen 22 NGWLMPGGKVITNP 35 (60)
T ss_pred ceeecCCCeeEcCH
Confidence 34999999997653
No 117
>KOG2937|consensus
Probab=29.60 E-value=13 Score=30.16 Aligned_cols=35 Identities=31% Similarity=0.650 Sum_probs=31.4
Q ss_pred CCeEEeeeEecCCCCCHHHHHHHHHHHHHCCcccc
Q psy10892 91 NGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAP 125 (135)
Q Consensus 91 ~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~ 125 (135)
+..|.||.|++..||-+..+++++-.||+|.+...
T Consensus 263 ~e~~~~~~~k~sr~e~~r~~si~s~~~e~~f~~~s 297 (348)
T KOG2937|consen 263 PENWTFPKGKISRGEKPRDASIRSTFEEPGFPFGS 297 (348)
T ss_pred cccccCcccccccCCccccchhhhcCCCcCCcccc
Confidence 56899999999999999999999999999986643
No 118
>KOG1794|consensus
Probab=22.68 E-value=1.7e+02 Score=23.69 Aligned_cols=58 Identities=17% Similarity=0.229 Sum_probs=33.8
Q ss_pred EEEEcCCCeEEEEEeecCCCCCeEEeeeEecCCCCCHHHHHHHHHHHHHCCcccc-ceEEEEEe
Q psy10892 71 AVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAP-TTLLAVET 133 (135)
Q Consensus 71 ~~i~~~~~~vLL~~r~~~~~~g~w~~PgG~i~~gEs~~~aa~REl~EE~Gl~~~~-~~~~~~~~ 133 (135)
++++++++.++-.- .....+.|..+.-.+ -+-.+.++||+.|+.|++... .+-+++.-
T Consensus 17 ~Vivd~~~~~~~~a--~~~~Tnh~~ig~~~~---~~rie~~i~~A~~k~g~d~~~~lr~lgL~l 75 (336)
T KOG1794|consen 17 LVIVDEDGTILGRA--VGGGTNHWLIGSTTC---ASRIEDMIREAKEKAGWDKKGPLRSLGLGL 75 (336)
T ss_pred EEEECCCCCEeeEe--eccccccccCCchHH---HHHHHHHHHHHHhhcCCCccCccceeeeec
Confidence 45566665553222 212245666651111 133466789999999998886 67777653
No 119
>COG4009 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.25 E-value=1.1e+02 Score=19.78 Aligned_cols=25 Identities=44% Similarity=0.569 Sum_probs=17.6
Q ss_pred ecCCCCCHHHHHHHHHHHHHCCccccc
Q psy10892 100 KVEEGETLEEAVKREVLEETGLEMAPT 126 (135)
Q Consensus 100 ~i~~gEs~~~aa~REl~EE~Gl~~~~~ 126 (135)
+++..+|.++ ..||+ |+.|.++...
T Consensus 55 Fl~~~~s~ee-v~~el-e~mga~in~d 79 (88)
T COG4009 55 FLEEVESEEE-VEREL-EDMGAEINRD 79 (88)
T ss_pred EEeccCCHHH-HHHHH-HHhCchhccc
Confidence 4566777766 45666 9999988754
Done!