RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10892
(135 letters)
>gnl|CDD|240028 cd04671, Nudix_Hydrolase_13, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes
belonging to this superfamily require a divalent cation,
such as Mg2+ or Mn2+, for their activity and contain a
highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. Substrates of
nudix hydrolases include intact and oxidatively damaged
nucleoside triphosphates, dinucleoside polyphosphates,
nucleotide-sugars and dinucleotide enzymes. These
substrates are metabolites or cell signaling molecules
that require regulation during different stages of the
cell cycle or during periods of stress. In general, the
role of the nudix hydrolase is to sanitize the
nucleotide pools and to maintain cell viability, thereby
serving as surveillance & "house-cleaning" enzymes.
Substrate specificity is used to define families within
the superfamily. Differences in substrate specificity
are determined by the N-terminal extension or by
residues in variable loop regions. Mechanistically,
substrate hydrolysis occurs by a nucleophilic
substitution reaction, with variation in the numbers and
roles of divalent cations required.
Length = 123
Score = 109 bits (273), Expect = 7e-32
Identities = 45/68 (66%), Positives = 55/68 (80%)
Query: 67 YIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPT 126
YIV AVI+N++ VL++QEAK C G WYLPAG++E GET+EEAVKREV EETGL+ PT
Sbjct: 1 YIVAAVILNNQGEVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPT 60
Query: 127 TLLAVETA 134
TLL+VE
Sbjct: 61 TLLSVEEQ 68
>gnl|CDD|239217 cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of
enzymes found in all three kingdoms of life, and it
catalyzes the hydrolysis of NUcleoside DIphosphates
linked to other moieties, X. Enzymes belonging to this
superfamily require a divalent cation, such as Mg2+ or
Mn2+ for their activity. Members of this family are
recognized by a highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which forms a
structural motif that functions as a metal binding and
catalytic site. Substrates of nudix hydrolase include
intact and oxidatively damaged nucleoside triphosphates,
dinucleoside polyphosphates, nucleotide-sugars and
dinucleotide enzymes. These substrates are metabolites
or cell signaling molecules that require regulation
during different stages of the cell cycle or during
periods of stress. In general, the role of the nudix
hydrolase is to sanitize the nucleotide pools and to
maintain cell viability, thereby serving as surveillance
and "house-cleaning" enzymes. Substrate specificity is
used to define child families within the superfamily.
Differences in substrate specificity are determined by
the N-terminal extension or by residues in variable loop
regions. Mechanistically, substrate hydrolysis occurs by
a nucleophilic substitution reaction, with variation in
the numbers and roles of divalent cations required. This
superfamily consists of at least nine families: IPP
(isopentenyl diphosphate) isomerase, ADP ribose
pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A
pyrophosphatase,
MTH1-7,8-dihydro-8-oxoguanine-triphosphatase,
diadenosine tetraphosphate hydrolase, NADH
pyrophosphatase, GDP-mannose hydrolase and the
c-terminal portion of the mutY adenine glycosylase.
Length = 123
Score = 73.7 bits (181), Expect = 5e-18
Identities = 33/65 (50%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 67 YIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPT 126
V AVI++ VL+++ A S G W LP G VE GETLEEA REV EETGL++
Sbjct: 1 VAVGAVILDEDGRVLLVRRADS-PGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVL 59
Query: 127 TLLAV 131
LL V
Sbjct: 60 RLLGV 64
>gnl|CDD|215841 pfam00293, NUDIX, NUDIX domain.
Length = 133
Score = 71.8 bits (176), Expect = 5e-17
Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 69 VMAVIINSKNAVLMMQEAKS-ICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTT 127
V V++N VL+++ ++ + G W LP GKVE GE+ EEA RE+ EETGL +
Sbjct: 5 VGVVLLNEDGEVLLVRRSRPPVFPGLWELPGGKVEPGESPEEAAVRELEEETGLRVLLLL 64
Query: 128 LLAV 131
LL V
Sbjct: 65 LLGV 68
>gnl|CDD|240054 cd04699, Nudix_Hydrolase_39, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes
belonging to this superfamily require a divalent cation,
such as Mg2+ or Mn2+, for their activity and contain a
highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. Substrates of
nudix hydrolases include intact and oxidatively damaged
nucleoside triphosphates, dinucleoside polyphosphates,
nucleotide-sugars and dinucleotide enzymes. These
substrates are metabolites or cell signaling molecules
that require regulation during different stages of the
cell cycle or during periods of stress. In general, the
role of the nudix hydrolase is to sanitize the
nucleotide pools and to maintain cell viability, thereby
serving as surveillance & "house-cleaning" enzymes.
Substrate specificity is used to define families within
the superfamily. Differences in substrate specificity
are determined by the N-terminal extension or by
residues in variable loop regions. Mechanistically,
substrate hydrolysis occurs by a nucleophilic
substitution reaction, with variation in the numbers and
roles of divalent cations required.
Length = 129
Score = 68.2 bits (167), Expect = 9e-16
Identities = 30/67 (44%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 69 VMAVIINSKNAVLMMQEAKS--ICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPT 126
V A+I+ +L+++ +K G W LP GKVEEGET EEA+KREV EETGL + P
Sbjct: 4 VAALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPF 63
Query: 127 TLLAVET 133
Sbjct: 64 LRYPSTV 70
>gnl|CDD|223979 COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport
and metabolism].
Length = 145
Score = 65.1 bits (159), Expect = 2e-14
Identities = 28/64 (43%), Positives = 38/64 (59%)
Query: 68 IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTT 127
+ + +I +L+++ A G W LP G VE GETLEEA +RE+ EETGL +
Sbjct: 11 VAVGALIVRNGRILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLE 70
Query: 128 LLAV 131
LLAV
Sbjct: 71 LLAV 74
>gnl|CDD|240040 cd04684, Nudix_Hydrolase_25, Contains a crystal structure of the
Nudix hydrolase from Enterococcus faecalis, which has an
unknown function. In general, members of the Nudix
hydrolase superfamily catalyze the hydrolysis of
NUcleoside DIphosphates linked to other moieties, X.
Enzymes belonging to this superfamily require a divalent
cation, such as Mg2+ or Mn2+, for their activity. They
also contain a highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which forms a
structural motif that functions as a metal binding and
catalytic site. Substrates of nudix hydrolases include
intact and oxidatively damaged nucleoside triphosphates,
dinucleoside polyphosphates, nucleotide-sugars and
dinucleotide enzymes. These substrates are metabolites
or cell signaling molecules that require regulation
during different stages of the cell cycle or during
periods of stress. In general, the role of the nudix
hydrolase is to sanitize the nucleotide pools and to
maintain cell viability, thereby serving as surveillance
& "house-cleaning" enzymes. Substrate specificity is
used to define families within the superfamily.
Differences in substrate specificity are determined by
the N-terminal extension or by residues in variable loop
regions. Mechanistically, substrate hydrolysis occurs by
a nucleophilic substitution reaction, with variation in
the numbers and roles of divalent cations required.
Length = 128
Score = 63.4 bits (155), Expect = 5e-14
Identities = 26/63 (41%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 69 VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128
AVI +L++Q+ G W LP G +E GE+ EEA+ REVLEETGL +
Sbjct: 3 AYAVIPRD-GKLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRR 61
Query: 129 LAV 131
L
Sbjct: 62 LGS 64
>gnl|CDD|240030 cd04673, Nudix_Hydrolase_15, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes
belonging to this superfamily require a divalent cation,
such as Mg2+ or Mn2+, for their activity and contain a
highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. Substrates of
nudix hydrolases include intact and oxidatively damaged
nucleoside triphosphates, dinucleoside polyphosphates,
nucleotide-sugars and dinucleotide enzymes. These
substrates are metabolites or cell signaling molecules
that require regulation during different stages of the
cell cycle or during periods of stress. In general, the
role of the nudix hydrolase is to sanitize the
nucleotide pools and to maintain cell viability, thereby
serving as surveillance & "house-cleaning" enzymes.
Substrate specificity is used to define families within
the superfamily. Differences in substrate specificity
are determined by the N-terminal extension or by
residues in variable loop regions. Mechanistically,
substrate hydrolysis occurs by a nucleophilic
substitution reaction, with variation in the numbers and
roles of divalent cations required.
Length = 122
Score = 63.0 bits (154), Expect = 8e-14
Identities = 31/63 (49%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 69 VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128
V AV+ VL+++ A G W P GKVE GETLE+A RE+LEETGLE L
Sbjct: 3 VGAVVFR-GGRVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGRL 61
Query: 129 LAV 131
L V
Sbjct: 62 LTV 64
>gnl|CDD|240032 cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes
belonging to this superfamily require a divalent cation,
such as Mg2+ or Mn2+, for their activity and contain a
highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. Substrates of
nudix hydrolases include intact and oxidatively damaged
nucleoside triphosphates, dinucleoside polyphosphates,
nucleotide-sugars and dinucleotide enzymes. These
substrates are metabolites or cell signaling molecules
that require regulation during different stages of the
cell cycle or during periods of stress. In general, the
role of the nudix hydrolase is to sanitize the
nucleotide pools and to maintain cell viability, thereby
serving as surveillance & "house-cleaning" enzymes.
Substrate specificity is used to define families within
the superfamily. Differences in substrate specificity
are determined by the N-terminal extension or by
residues in variable loop regions. Mechanistically,
substrate hydrolysis occurs by a nucleophilic
substitution reaction, with variation in the numbers and
roles of divalent cations required.
Length = 129
Score = 62.3 bits (152), Expect = 2e-13
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 68 IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTT 127
V AV+ + + VL+++ + NG W LP G VE GE+ + REV EETGL++ T
Sbjct: 4 GVTAVVRDDEGRVLLIRRSD---NGLWALPGGAVEPGESPADTAVREVREETGLDVEVTG 60
Query: 128 LLAVET 133
L+ + T
Sbjct: 61 LVGIYT 66
>gnl|CDD|240027 cd04670, Nudix_Hydrolase_12, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes
belonging to this superfamily require a divalent cation,
such as Mg2+ or Mn2+, for their activity and contain a
highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. Substrates of
nudix hydrolases include intact and oxidatively damaged
nucleoside triphosphates, dinucleoside polyphosphates,
nucleotide-sugars and dinucleotide enzymes. These
substrates are metabolites or cell signaling molecules
that require regulation during different stages of the
cell cycle or during periods of stress. In general, the
role of the nudix hydrolase is to sanitize the
nucleotide pools and to maintain cell viability, thereby
serving as surveillance & "house-cleaning" enzymes.
Substrate specificity is used to define families within
the superfamily. Differences in substrate specificity
are determined by the N-terminal extension or by
residues in variable loop regions. Mechanistically,
substrate hydrolysis occurs by a nucleophilic
substitution reaction, with variation in the numbers and
roles of divalent cations required.
Length = 127
Score = 61.9 bits (151), Expect = 2e-13
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 69 VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLE 122
V +++N KN VL++QE ++ W LP G V+ GE + + REVLEETG++
Sbjct: 5 VGGLVLNEKNEVLVVQE-RNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGID 57
>gnl|CDD|240055 cd04700, DR1025_like, DR1025 from Deinococcus radiodurans, a member
of the Nudix hydrolase superfamily, show nucleoside
triphosphatase and dinucleoside polyphosphate
pyrophosphatase activities. Like other enzymes belonging
to this superfamily, it requires a divalent cation, in
this case Mg2+, for its activity. It also contains a
highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. In general,
substrates of nudix hydrolases include intact and
oxidatively damaged nucleoside triphosphates,
dinucleoside polyphosphates, nucleotide-sugars and
dinucleotide enzymes. These substrates are metabolites
or cell signaling molecules that require regulation
during different stages of the cell cycle or during
periods of stress. In general, the role of the nudix
hydrolase is to sanitize the nucleotide pools and to
maintain cell viability, thereby serving as surveillance
& "house-cleaning" enzymes. Substrate specificity is
used to define families within the superfamily.
Differences in substrate specificity are determined by
the N-terminal extension or by residues in variable loop
regions. Mechanistically, substrate hydrolysis occurs by
a nucleophilic substitution reaction, with variation in
the numbers and roles of divalent cations required.
Length = 142
Score = 62.2 bits (151), Expect = 3e-13
Identities = 27/59 (45%), Positives = 38/59 (64%)
Query: 71 AVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLL 129
AVI+N +N VL++QE G W++P+G VE+GE ++A RE EETGL + P L
Sbjct: 18 AVILNERNDVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKFL 76
>gnl|CDD|239517 cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase
is a prototypical Nudix hydrolase that catalyzes the
hydrolysis of nucleoside and deoxynucleoside
triphosphates (NTPs and dNTPs) by substitution at a
beta-phosphorus to yield a nucleotide monophosphate
(NMP) and inorganic pyrophosphate (PPi). This enzyme
requires two divalent cations for activity; one
coordinates the phosphoryl groups of the NTP/dNTP
substrate, and the other coordinates to the enzyme. It
also contains the Nudix motif, a highly conserved
23-residue block (GX5EX7REUXEEXGU, where U = I, L or V),
that functions as metal binding and catalytic site. MutT
pyrophosphohydrolase is important in preventing errors
in DNA replication by hydrolyzing mutagenic nucleotides
such as 8-oxo-dGTP (a product of oxidative damage),
which can mispair with template adenine during DNA
replication, to guanine nucleotides.
Length = 124
Score = 61.0 bits (149), Expect = 4e-13
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 68 IVMAVIINSKNAVLMMQ--EAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAP 125
+V A+II+ +L+ Q K + G W P GKVE GET E+A+ RE+ EE G+E+
Sbjct: 3 VVAAIIIDDDGRILIAQRPAGKHL-GGLWEFPGGKVEPGETPEQALVRELREELGIEVEV 61
Query: 126 TTLLAV 131
LLA
Sbjct: 62 GELLAT 67
>gnl|CDD|240034 cd04678, Nudix_Hydrolase_19, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes
belonging to this superfamily require a divalent cation,
such as Mg2+ or Mn2+, for their activity and contain a
highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. Substrates of
nudix hydrolases include intact and oxidatively damaged
nucleoside triphosphates, dinucleoside polyphosphates,
nucleotide-sugars and dinucleotide enzymes. These
substrates are metabolites or cell signaling molecules
that require regulation during different stages of the
cell cycle or during periods of stress. In general, the
role of the nudix hydrolase is to sanitize the
nucleotide pools and to maintain cell viability, thereby
serving as surveillance & "house-cleaning" enzymes.
Substrate specificity is used to define families within
the superfamily. Differences in substrate specificity
are determined by the N-terminal extension or by
residues in variable loop regions. Mechanistically,
substrate hydrolysis occurs by a nucleophilic
substitution reaction, with variation in the numbers and
roles of divalent cations required.
Length = 129
Score = 60.4 bits (147), Expect = 8e-13
Identities = 27/63 (42%), Positives = 34/63 (53%)
Query: 69 VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128
V ++N K VL+ + S G W LP G +E GE+ EE REVLEETGL +
Sbjct: 5 VGVFVLNPKGKVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQF 64
Query: 129 LAV 131
L V
Sbjct: 65 LTV 67
>gnl|CDD|240036 cd04680, Nudix_Hydrolase_21, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes
belonging to this superfamily require a divalent cation,
such as Mg2+ or Mn2+, for their activity and contain a
highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. Substrates of
nudix hydrolases include intact and oxidatively damaged
nucleoside triphosphates, dinucleoside polyphosphates,
nucleotide-sugars and dinucleotide enzymes. These
substrates are metabolites or cell signaling molecules
that require regulation during different stages of the
cell cycle or during periods of stress. In general, the
role of the nudix hydrolase is to sanitize the
nucleotide pools and to maintain cell viability, thereby
serving as surveillance & "house-cleaning" enzymes.
Substrate specificity is used to define families within
the superfamily. Differences in substrate specificity
are determined by the N-terminal extension or by
residues in variable loop regions. Mechanistically,
substrate hydrolysis occurs by a nucleophilic
substitution reaction, with variation in the numbers and
roles of divalent cations required.
Length = 120
Score = 60.0 bits (146), Expect = 1e-12
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 69 VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128
AV+ ++ VL++ + WYLP G +E GET EA +RE+LEE G+ +A
Sbjct: 3 ARAVVTDADGRVLLV---RHTYGPGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAE 59
Query: 129 L 129
L
Sbjct: 60 L 60
>gnl|CDD|240052 cd04696, Nudix_Hydrolase_37, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes
belonging to this superfamily require a divalent cation,
such as Mg2+ or Mn2+, for their activity and contain a
highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. Substrates of
nudix hydrolases include intact and oxidatively damaged
nucleoside triphosphates, dinucleoside polyphosphates,
nucleotide-sugars and dinucleotide enzymes. These
substrates are metabolites or cell signaling molecules
that require regulation during different stages of the
cell cycle or during periods of stress. In general, the
role of the nudix hydrolase is to sanitize the
nucleotide pools and to maintain cell viability, thereby
serving as surveillance & "house-cleaning" enzymes.
Substrate specificity is used to define families within
the superfamily. Differences in substrate specificity
are determined by the N-terminal extension or by
residues in variable loop regions. Mechanistically,
substrate hydrolysis occurs by a nucleophilic
substitution reaction, with variation in the numbers and
roles of divalent cations required.
Length = 125
Score = 57.8 bits (140), Expect = 7e-12
Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 69 VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128
V A+I +L+++ K G W +P GKVE GETLEEA+KRE EETGL++
Sbjct: 5 VGALIYAPDGRILLVRTTK--WRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKF 62
Query: 129 LAVETA 134
V+ A
Sbjct: 63 AMVQEA 68
>gnl|CDD|240033 cd04677, Nudix_Hydrolase_18, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes
belonging to this superfamily require a divalent cation,
such as Mg2+ or Mn2+, for their activity and contain a
highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. Substrates of
nudix hydrolases include intact and oxidatively damaged
nucleoside triphosphates, dinucleoside polyphosphates,
nucleotide-sugars and dinucleotide enzymes. These
substrates are metabolites or cell signaling molecules
that require regulation during different stages of the
cell cycle or during periods of stress. In general, the
role of the nudix hydrolase is to sanitize the
nucleotide pools and to maintain cell viability, thereby
serving as surveillance & "house-cleaning" enzymes.
Substrate specificity is used to define families within
the superfamily. Differences in substrate specificity
are determined by the N-terminal extension or by
residues in variable loop regions. Mechanistically,
substrate hydrolysis occurs by a nucleophilic
substitution reaction, with variation in the numbers and
roles of divalent cations required.
Length = 132
Score = 57.2 bits (139), Expect = 1e-11
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 71 AVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLA 130
+++N + VL+ + + G W LP G +E GE+LEE +RE+ EETGLE+ LL
Sbjct: 12 VILLNEQGEVLLQKRSD---TGDWGLPGGAMELGESLEETARRELKEETGLEVEELELLG 68
Query: 131 V 131
V
Sbjct: 69 V 69
>gnl|CDD|240029 cd04672, Nudix_Hydrolase_14, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes
belonging to this superfamily require a divalent cation,
such as Mg2+ or Mn2+, for their activity and contain a
highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. Substrates of
nudix hydrolases include intact and oxidatively damaged
nucleoside triphosphates, dinucleoside polyphosphates,
nucleotide-sugars and dinucleotide enzymes. These
substrates are metabolites or cell signaling molecules
that require regulation during different stages of the
cell cycle or during periods of stress. In general, the
role of the nudix hydrolase is to sanitize the
nucleotide pools and to maintain cell viability, thereby
serving as surveillance & "house-cleaning" enzymes.
Substrate specificity is used to define families within
the superfamily. Differences in substrate specificity
are determined by the N-terminal extension or by
residues in variable loop regions. Mechanistically,
substrate hydrolysis occurs by a nucleophilic
substitution reaction, with variation in the numbers and
roles of divalent cations required.
Length = 123
Score = 56.4 bits (137), Expect = 2e-11
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 69 VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128
V A I +L+++E G W LP G + G + E V +EV EETGL++ L
Sbjct: 5 VRAAIFKD-GKILLVREKSD---GLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKL 60
Query: 129 LAV 131
AV
Sbjct: 61 AAV 63
>gnl|CDD|240035 cd04679, Nudix_Hydrolase_20, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes
belonging to this superfamily require a divalent cation,
such as Mg2+ or Mn2+, for their activity and contain a
highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. Substrates of
nudix hydrolases include intact and oxidatively damaged
nucleoside triphosphates, dinucleoside polyphosphates,
nucleotide-sugars and dinucleotide enzymes. These
substrates are metabolites or cell signaling molecules
that require regulation during different stages of the
cell cycle or during periods of stress. In general, the
role of the nudix hydrolase is to sanitize the
nucleotide pools and to maintain cell viability, thereby
serving as surveillance & "house-cleaning" enzymes.
Substrate specificity is used to define families within
the superfamily. Differences in substrate specificity
are determined by the N-terminal extension or by
residues in variable loop regions. Mechanistically,
substrate hydrolysis occurs by a nucleophilic
substitution reaction, with variation in the numbers and
roles of divalent cations required.
Length = 125
Score = 55.9 bits (135), Expect = 5e-11
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 71 AVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLA 130
A I+ +L+++ ++ G W +P GKV+ E +E+AV RE+ EETGL + T LL
Sbjct: 7 AAILRDDGKLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRLLC 66
Query: 131 V 131
V
Sbjct: 67 V 67
>gnl|CDD|239647 cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the
Nudix hydrolase from Nitrosomonas europaea, which has an
unknown function. In general, members of the Nudix
hydrolase superfamily catalyze the hydrolysis of
NUcleoside DIphosphates linked to other moieties, X.
Enzymes belonging to this superfamily require a divalent
cation, such as Mg2+ or Mn2+, for their activity. They
also contain a highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which forms a
structural motif that functions as a metal binding and
catalytic site. Substrates of nudix hydrolases include
intact and oxidatively damaged nucleoside triphosphates,
dinucleoside polyphosphates, nucleotide-sugars and
dinucleotide enzymes. These substrates are metabolites
or cell signaling molecules that require regulation
during different stages of the cell cycle or during
periods of stress. In general, the role of the nudix
hydrolase is to sanitize the nucleotide pools and to
maintain cell viability, thereby serving as surveillance
& "house-cleaning" enzymes. Substrate specificity is
used to define families within the superfamily.
Differences in substrate specificity are determined by
the N-terminal extension or by residues in variable loop
regions. Mechanistically, substrate hydrolysis occurs by
a nucleophilic substitution reaction, with variation in
the numbers and roles of divalent cations required.
Length = 134
Score = 55.7 bits (135), Expect = 6e-11
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 68 IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTT 127
+ +A ++ L+++E + PAG +E GE+L EA RE LEETG + PT
Sbjct: 1 VTVAAVVERDGRFLLVEEETD-GGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTA 59
Query: 128 LLAV 131
LL +
Sbjct: 60 LLGI 63
>gnl|CDD|240039 cd04683, Nudix_Hydrolase_24, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes
belonging to this superfamily require a divalent cation,
such as Mg2+ or Mn2+, for their activity and contain a
highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. Substrates of
nudix hydrolases include intact and oxidatively damaged
nucleoside triphosphates, dinucleoside polyphosphates,
nucleotide-sugars and dinucleotide enzymes. These
substrates are metabolites or cell signaling molecules
that require regulation during different stages of the
cell cycle or during periods of stress. In general, the
role of the nudix hydrolase is to sanitize the
nucleotide pools and to maintain cell viability, thereby
serving as surveillance & "house-cleaning" enzymes.
Substrate specificity is used to define families within
the superfamily. Differences in substrate specificity
are determined by the N-terminal extension or by
residues in variable loop regions. Mechanistically,
substrate hydrolysis occurs by a nucleophilic
substitution reaction, with variation in the numbers and
roles of divalent cations required.
Length = 120
Score = 55.1 bits (133), Expect = 9e-11
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 78 NAVLMMQEAKSI-CNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128
+ VL+ + A + +G W LPAG +E+GE A RE EE G+ + P L
Sbjct: 11 DEVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDL 62
>gnl|CDD|240026 cd04669, Nudix_Hydrolase_11, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes
belonging to this superfamily require a divalent cation,
such as Mg2+ or Mn2+, for their activity and contain a
highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. Substrates of
nudix hydrolases include intact and oxidatively damaged
nucleoside triphosphates, dinucleoside polyphosphates,
nucleotide-sugars and dinucleotide enzymes. These
substrates are metabolites or cell signaling molecules
that require regulation during different stages of the
cell cycle or during periods of stress. In general, the
role of the nudix hydrolase is to sanitize the
nucleotide pools and to maintain cell viability, thereby
serving as surveillance & "house-cleaning" enzymes.
Substrate specificity is used to define families within
the superfamily. Differences in substrate specificity
are determined by the N-terminal extension or by
residues in variable loop regions. Mechanistically,
substrate hydrolysis occurs by a nucleophilic
substitution reaction, with variation in the numbers and
roles of divalent cations required.
Length = 121
Score = 55.1 bits (133), Expect = 9e-11
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 71 AVIINSKNAVLMMQEAKSICNGAWY--LPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128
VIIN + +L+++ K G Y P G +EEGET EEA KRE LEE GL++ +
Sbjct: 5 IVIINDQGEILLIRRIK---PGKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEI 61
Query: 129 LAVE 132
+
Sbjct: 62 FLIV 65
>gnl|CDD|240037 cd04681, Nudix_Hydrolase_22, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes
belonging to this superfamily require a divalent cation,
such as Mg2+ or Mn2+, for their activity and contain a
highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. Substrates of
nudix hydrolases include intact and oxidatively damaged
nucleoside triphosphates, dinucleoside polyphosphates,
nucleotide-sugars and dinucleotide enzymes. These
substrates are metabolites or cell signaling molecules
that require regulation during different stages of the
cell cycle or during periods of stress. In general, the
role of the nudix hydrolase is to sanitize the
nucleotide pools and to maintain cell viability, thereby
serving as surveillance & "house-cleaning" enzymes.
Substrate specificity is used to define families within
the superfamily. Differences in substrate specificity
are determined by the N-terminal extension or by
residues in variable loop regions. Mechanistically,
substrate hydrolysis occurs by a nucleophilic
substitution reaction, with variation in the numbers and
roles of divalent cations required.
Length = 130
Score = 55.1 bits (133), Expect = 9e-11
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 69 VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128
V +I+N +L+++ A+ G LP G V+ GE+ EEA+ RE+ EETGL++ +
Sbjct: 4 VGVLILNEDGELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSY 63
Query: 129 LA 130
L
Sbjct: 64 LF 65
>gnl|CDD|240046 cd04690, Nudix_Hydrolase_31, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes
belonging to this superfamily require a divalent cation,
such as Mg2+ or Mn2+, for their activity and contain a
highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. Substrates of
nudix hydrolases include intact and oxidatively damaged
nucleoside triphosphates, dinucleoside polyphosphates,
nucleotide-sugars and dinucleotide enzymes. These
substrates are metabolites or cell signaling molecules
that require regulation during different stages of the
cell cycle or during periods of stress. In general, the
role of the nudix hydrolase is to sanitize the
nucleotide pools and to maintain cell viability, thereby
serving as surveillance & "house-cleaning" enzymes.
Substrate specificity is used to define families within
the superfamily. Differences in substrate specificity
are determined by the N-terminal extension or by
residues in variable loop regions. Mechanistically,
substrate hydrolysis occurs by a nucleophilic
substitution reaction, with variation in the numbers and
roles of divalent cations required.
Length = 118
Score = 54.2 bits (131), Expect = 2e-10
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 68 IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTT 127
I A+I+ VL+ + +YLP GK+E GET +A+ RE+ EE GL++ P +
Sbjct: 2 IAAALILVRDGRVLL---VRKRGTDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDS 58
Query: 128 LLAVET 133
L + T
Sbjct: 59 LEYLGT 64
>gnl|CDD|239519 cd03427, MTH1, MutT homolog-1 (MTH1) is a member of the Nudix
hydrolase superfamily. MTH1, the mammalian counterpart
of MutT, hydrolyzes oxidized purine nucleoside
triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to
monophosphates, thereby preventing the incorporation of
such oxygen radicals during replication. This is an
important step in the repair mechanism in genomic and
mitochondrial DNA. Like other members of the Nudix
family, it requires a divalent cation, such as Mg2+ or
Mn2+, for activity, and contain the Nudix motif, a
highly conserved 23-residue block (GX5EX7REUXEEXGU,
where U = I, L or V), that functions as a metal binding
and catalytic site. MTH1 is predominantly localized in
the cytoplasm and mitochondria. Structurally, this
enzyme adopts a similar fold to MutT despite low
sequence similarity outside the conserved nudix motif.
The most distinctive structural difference between MutT
and MTH1 is the presence of a beta-hairpin, which is
absent in MutT. This results in a much deeper and
narrower substrate binding pocket. Mechanistically, MTH1
contains dual specificity for nucleotides that contain
2-OH-adenine bases and those that contain 8-oxo-guanine
bases.
Length = 137
Score = 54.1 bits (131), Expect = 3e-10
Identities = 23/51 (45%), Positives = 27/51 (52%)
Query: 72 VIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLE 122
I + VL++ K G W P GKVE GET EE RE+ EETGL
Sbjct: 6 CFIKDPDKVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLT 56
>gnl|CDD|215184 PLN02325, PLN02325, nudix hydrolase.
Length = 144
Score = 53.3 bits (128), Expect = 6e-10
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 62 KKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGL 121
+ + + + V + N+VL+ + SI + + LP G +E GE+ EE REV EETGL
Sbjct: 4 GEPIPRVAVVVFLLKGNSVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGL 63
Query: 122 EMAPTTLLAV 131
E+ LL V
Sbjct: 64 EIEKIELLTV 73
>gnl|CDD|223568 COG0494, MutT, NTP pyrophosphohydrolases including oxidative damage
repair enzymes [DNA replication, recombination, and
repair / General function prediction only].
Length = 161
Score = 52.9 bits (126), Expect = 1e-09
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 68 IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLE-EAVKREVLEETGLEMAPT 126
+ + V + VL+ Q G W LP GKVE GE L EA RE+ EETGL +
Sbjct: 14 VAVLVGRDGPGEVLLAQRRDDG--GLWELPGGKVEPGEELPEEAAARELEEETGLRVKDE 71
Query: 127 TLLAV 131
L +
Sbjct: 72 RLELL 76
>gnl|CDD|239643 cd03671, Ap4A_hydrolase_plant_like, Diadenosine tetraphosphate
(Ap4A) hydrolase is a member of the Nudix hydrolase
superfamily. Members of this family are well represented
in a variety of prokaryotic and eukaryotic organisms.
Phylogenetic analysis reveals two distinct subgroups
where plant enzymes fall into one group (represented by
this subfamily) and fungi/animals/archaea enzymes fall
into another. Bacterial enzymes are found in both
subfamilies. Ap4A is a potential by-product of aminoacyl
tRNA synthesis, and accumulation of Ap4A has been
implicated in a range of biological events, such as DNA
replication, cellular differentiation, heat shock,
metabolic stress, and apoptosis. Ap4A hydrolase cleaves
Ap4A asymmetrically into ATP and AMP. It is important in
the invasive properties of bacteria and thus presents a
potential target for the inhibition of such invasive
bacteria. Besides the signature nudix motif
(G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A
hydrolase is structurally similar to the other members
of the nudix superfamily with some degree of variations.
Several regions in the sequences are poorly defined and
substrate and metal binding sites are only predicted
based on kinetic studies.
Length = 147
Score = 51.8 bits (125), Expect = 2e-09
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 69 VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLE 122
V V+ N V + + + GAW P G ++EGE E+A RE+ EETGL+
Sbjct: 6 VGVVLFNEDGKVFVGRRIDT--PGAWQFPQGGIDEGEDPEQAALRELEEETGLD 57
>gnl|CDD|240044 cd04688, Nudix_Hydrolase_29, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes
belonging to this superfamily require a divalent cation,
such as Mg2+ or Mn2+, for their activity and contain a
highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. Substrates of
nudix hydrolases include intact and oxidatively damaged
nucleoside triphosphates, dinucleoside polyphosphates,
nucleotide-sugars and dinucleotide enzymes. These
substrates are metabolites or cell signaling molecules
that require regulation during different stages of the
cell cycle or during periods of stress. In general, the
role of the nudix hydrolase is to sanitize the
nucleotide pools and to maintain cell viability, thereby
serving as surveillance & "house-cleaning" enzymes.
Substrate specificity is used to define families within
the superfamily. Differences in substrate specificity
are determined by the N-terminal extension or by
residues in variable loop regions. Mechanistically,
substrate hydrolysis occurs by a nucleophilic
substitution reaction, with variation in the numbers and
roles of divalent cations required.
Length = 126
Score = 51.5 bits (124), Expect = 2e-09
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 69 VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128
A+II+ +L+ + + P G +E GE+ EEA+ RE EE GL++ T L
Sbjct: 4 AAAIIIH-NGKLLVQKNPD---ETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRL 59
Query: 129 LAV 131
L V
Sbjct: 60 LGV 62
>gnl|CDD|240023 cd04665, Nudix_Hydrolase_8, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes
belonging to this superfamily require a divalent cation,
such as Mg2+ or Mn2+, for their activity and contain a
highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. Substrates of
nudix hydrolases include intact and oxidatively damaged
nucleoside triphosphates, dinucleoside polyphosphates,
nucleotide-sugars and dinucleotide enzymes. These
substrates are metabolites or cell signaling molecules
that require regulation during different stages of the
cell cycle or during periods of stress. In general, the
role of the nudix hydrolase is to sanitize the
nucleotide pools and to maintain cell viability, thereby
serving as surveillance & "house-cleaning" enzymes.
Substrate specificity is used to define families within
the superfamily. Differences in substrate specificity
are determined by the N-terminal extension or by
residues in variable loop regions. Mechanistically,
substrate hydrolysis occurs by a nucleophilic
substitution reaction, with variation in the numbers and
roles of divalent cations required.
Length = 118
Score = 51.2 bits (123), Expect = 2e-09
Identities = 21/41 (51%), Positives = 25/41 (60%)
Query: 93 AWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET 133
W P G VE GET+EEA +REV EETG E+ TL+
Sbjct: 22 GWEFPGGHVEPGETIEEAARREVWEETGAELGSLTLVGYYQ 62
>gnl|CDD|239948 cd04511, Nudix_Hydrolase_4, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes
belonging to this superfamily require a divalent cation,
such as Mg2+ or Mn2+, for their activity and contain a
highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, U=I, L or V), which functions as a
metal binding and catalytic site. Substrates of nudix
hydrolases include intact and oxidatively damaged
nucleoside triphosphates, dinucleoside polyphosphates,
nucleotide-sugars and dinucleotide enzymes. These
substrates are metabolites or cell signaling molecules
that require regulation during different stages of the
cell cycle or during periods of stress. In general, the
role of the nudix hydrolase is to sanitize the
nucleotide pools and to maintain cell viability, thereby
serving as surveillance & "house-cleaning" enzymes.
Substrate specificity is used to define families within
the superfamily. Differences in substrate specificity
are determined by the N-terminal extension or by
residues in variable loop regions. Mechanistically,
substrate hydrolysis occurs by a nucleophilic
substitution reaction, with variation in the numbers and
roles of divalent cations required.
Length = 130
Score = 51.1 bits (123), Expect = 3e-09
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 68 IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTT 127
I++ + + VL+ + A +G W LPAG +E GET E+ RE EE G +
Sbjct: 14 IIVGCVPEWEGKVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGARVEIDG 73
Query: 128 LLAV 131
L AV
Sbjct: 74 LYAV 77
>gnl|CDD|182721 PRK10776, PRK10776, nucleoside triphosphate pyrophosphohydrolase;
Provisional.
Length = 129
Score = 50.8 bits (122), Expect = 4e-09
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 68 IVMAVIINSKNAVLMMQE-AKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPT 126
I + +I N N + + + A + G W P GK+E GET E+A+ RE+ EE G+ +
Sbjct: 6 IAVGIIRNPNNEIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHA 65
Query: 127 TLLAVET 133
TL
Sbjct: 66 TLFEKLE 72
>gnl|CDD|240043 cd04687, Nudix_Hydrolase_28, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes
belonging to this superfamily require a divalent cation,
such as Mg2+ or Mn2+, for their activity and contain a
highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. Substrates of
nudix hydrolases include intact and oxidatively damaged
nucleoside triphosphates, dinucleoside polyphosphates,
nucleotide-sugars and dinucleotide enzymes. These
substrates are metabolites or cell signaling molecules
that require regulation during different stages of the
cell cycle or during periods of stress. In general, the
role of the nudix hydrolase is to sanitize the
nucleotide pools and to maintain cell viability, thereby
serving as surveillance & "house-cleaning" enzymes.
Substrate specificity is used to define families within
the superfamily. Differences in substrate specificity
are determined by the N-terminal extension or by
residues in variable loop regions. Mechanistically,
substrate hydrolysis occurs by a nucleophilic
substitution reaction, with variation in the numbers and
roles of divalent cations required.
Length = 128
Score = 50.5 bits (121), Expect = 5e-09
Identities = 27/63 (42%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 71 AVII-NSKNAVLMMQEAKSICNGAWY-LPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128
AVII N K ++ + G WY LP G E GETLE+A RE EE G+++ L
Sbjct: 6 AVIIKNDKILLIKHHDD----GGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPL 61
Query: 129 LAV 131
L V
Sbjct: 62 LFV 64
>gnl|CDD|239645 cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase
is a member of the Nudix hydrolase superfamily. Ap6A
hydrolase specifically hydrolyzes diadenosine
polyphosphates, but not ATP or diadenosine triphosphate,
and it generates ATP as the product. Ap6A, the most
preferred substrate, hydrolyzes to produce two ATP
molecules, which is a novel hydrolysis mode for Ap6A.
These results indicate that Ap6A hydrolase is a
diadenosine polyphosphate hydrolase. It requires the
presence of a divalent cation, such as Mn2+, Mg2+, Zn2+,
and Co2+, for activity. Members of the Nudix superfamily
are recognized by a highly conserved 23-residue nudix
motif (GX5EX7REUXEEXGU, where U = I, L or V), which
forms a structural motif that functions as a metal
binding and catalytic site.
Length = 131
Score = 50.0 bits (120), Expect = 8e-09
Identities = 18/29 (62%), Positives = 20/29 (68%)
Query: 94 WYLPAGKVEEGETLEEAVKREVLEETGLE 122
W LP GK+E GET EA REV EETG+
Sbjct: 29 WSLPKGKLEPGETPPEAAVREVEEETGIR 57
>gnl|CDD|239521 cd03429, NADH_pyrophosphatase, NADH pyrophosphatase, a member of
the Nudix hydrolase superfamily, catalyzes the cleavage
of NADH into reduced nicotinamide mononucleotide (NMNH)
and AMP. Like other members of the Nudix family, it
requires a divalent cation, such as Mg2+ or Mn2+, for
activity. Members of this family are also recognized by
the Nudix motif, a highly conserved 23-residue block
(GX5EX7REUXEEXGU, where U = I, L or V), that functions
as a metal binding and catalytic site. A block of 8
conserved amino acids downstream of the nudix motif is
thought to give NADH pyrophosphatase its specificity for
NADH. NADH pyrophosphatase forms a dimer.
Length = 131
Score = 49.8 bits (120), Expect = 9e-09
Identities = 17/25 (68%), Positives = 20/25 (80%)
Query: 98 AGKVEEGETLEEAVKREVLEETGLE 122
AG VE GE+LEEAV+REV EE G+
Sbjct: 31 AGFVEPGESLEEAVRREVKEEVGIR 55
>gnl|CDD|234820 PRK00714, PRK00714, RNA pyrophosphohydrolase; Reviewed.
Length = 156
Score = 50.2 bits (121), Expect = 1e-08
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 69 VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGL 121
V +++N + V + +W P G ++ GET E+A+ RE+ EE GL
Sbjct: 11 VGIILLNRQGQVFWGRRIGQG--HSWQFPQGGIDPGETPEQAMYRELYEEVGL 61
>gnl|CDD|239516 cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase)
catalyzes the hydrolysis of ADP-ribose and a variety of
additional ADP-sugar conjugates to AMP and
ribose-5-phosphate. Like other members of the Nudix
hydrolase superfamily, it requires a divalent cation,
such as Mg2+, for its activity. It also contains a
highly conserved 23-residue Nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V) which functions
as a metal binding site/catalytic site. In addition to
the Nudix motif, there are additional conserved amino
acid residues, distal from the signature sequence, that
correlate with substrate specificity. In humans, there
are four distinct ADPRase activities, three putative
cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single
mitochondrial enzyme (ADPRase-m). Human ADPRase-II is
also referred to as NUDT5. It lacks the N-terminal
target sequence unique to mitochondrial ADPRase. The
different cytosolic types are distinguished by their
specificities for substrate and specific requirement for
metal ions. NUDT5 forms a homodimer.
Length = 137
Score = 49.8 bits (120), Expect = 1e-08
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 96 LPAGKVEEGETLEEAVKREVLEETGLE 122
LPAG ++ GE EEA +RE+ EETG E
Sbjct: 33 LPAGLIDPGEDPEEAARRELEEETGYE 59
>gnl|CDD|236361 PRK08999, PRK08999, hypothetical protein; Provisional.
Length = 312
Score = 49.9 bits (120), Expect = 4e-08
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 68 IVMAVIINSKNAVLMMQEAKSI-CNGAWYLPAGKVEEGETLEEAVKREVLEETGLE 122
+ VI ++ +L+ + + G W P GKVE GET+E+A+ RE+ EE G+E
Sbjct: 7 VAAGVIRDADGRILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIE 62
>gnl|CDD|239520 cd03428, Ap4A_hydrolase_human_like, Diadenosine tetraphosphate
(Ap4A) hydrolase is a member of the Nudix hydrolase
superfamily. Ap4A hydrolases are well represented in a
variety of prokaryotic and eukaryotic organisms.
Phylogenetic analysis reveals two distinct subgroups
where plant enzymes fall into one subfamily and
fungi/animals/archaea enzymes, represented by this
subfamily, fall into another. Bacterial enzymes are
found in both subfamilies. Ap4A is a potential
by-product of aminoacyl tRNA synthesis, and accumulation
of Ap4A has been implicated in a range of biological
events, such as DNA replication, cellular
differentiation, heat shock, metabolic stress, and
apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically
into ATP and AMP. It is important in the invasive
properties of bacteria and thus presents a potential
target for inhibition of such invasive bacteria. Besides
the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U
is Ile, Leu, or Val) that functions as a metal binding
and catalytic site, and a required divalent cation, Ap4A
hydrolase is structurally similar to the other members
of the nudix superfamily with some degree of variation.
Several regions in the sequences are poorly defined and
substrate and metal binding sites are only predicted
based on kinetic studies.
Length = 130
Score = 47.6 bits (114), Expect = 6e-08
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 71 AVIINSKN---AVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLE 122
A+I N L++Q + G W P G VE GE EA RE EETG+
Sbjct: 7 AIIYRRLNNEIEYLLLQASY----GHWDFPKGHVEPGEDDLEAALRETEEETGIT 57
>gnl|CDD|240025 cd04667, Nudix_Hydrolase_10, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes
belonging to this superfamily require a divalent cation,
such as Mg2+ or Mn2+, for their activity and contain a
highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. Substrates of
nudix hydrolases include intact and oxidatively damaged
nucleoside triphosphates, dinucleoside polyphosphates,
nucleotide-sugars and dinucleotide enzymes. These
substrates are metabolites or cell signaling molecules
that require regulation during different stages of the
cell cycle or during periods of stress. In general, the
role of the nudix hydrolase is to sanitize the
nucleotide pools and to maintain cell viability, thereby
serving as surveillance & "house-cleaning" enzymes.
Substrate specificity is used to define families within
the superfamily. Differences in substrate specificity
are determined by the N-terminal extension or by
residues in variable loop regions. Mechanistically,
substrate hydrolysis occurs by a nucleophilic
substitution reaction, with variation in the numbers and
roles of divalent cations required.
Length = 112
Score = 47.3 bits (113), Expect = 7e-08
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 91 NGAWYLPAGKVEEGETLEEAVKREVLEETGLE 122
W LP GK+E GET +A +RE+ EETGL+
Sbjct: 20 GSRWALPGGKIEPGETPLQAARRELQEETGLQ 51
>gnl|CDD|240050 cd04694, Nudix_Hydrolase_35, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes
belonging to this superfamily require a divalent cation,
such as Mg2+ or Mn2+, for their activity and contain a
highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. Substrates of
nudix hydrolases include intact and oxidatively damaged
nucleoside triphosphates, dinucleoside polyphosphates,
nucleotide-sugars and dinucleotide enzymes. These
substrates are metabolites or cell signaling molecules
that require regulation during different stages of the
cell cycle or during periods of stress. In general, the
role of the nudix hydrolase is to sanitize the
nucleotide pools and to maintain cell viability, thereby
serving as surveillance & "house-cleaning" enzymes.
Substrate specificity is used to define families within
the superfamily. Differences in substrate specificity
are determined by the N-terminal extension or by
residues in variable loop regions. Mechanistically,
substrate hydrolysis occurs by a nucleophilic
substitution reaction, with variation in the numbers and
roles of divalent cations required.
Length = 143
Score = 47.1 bits (112), Expect = 1e-07
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 71 AVIINSKN-AVLMMQEAKSICN--GAWYLPAGKVEEGETLEEAVKREVLEETGLEMAP 125
AV++ S + +L+ + A S+ W P G VE GE L EA RE+ EETGL + P
Sbjct: 5 AVLLQSSDQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDP 62
>gnl|CDD|240022 cd04664, Nudix_Hydrolase_7, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes
belonging to this superfamily require a divalent cation,
such as Mg2+ or Mn2+, for their activity and contain a
highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. Substrates of
nudix hydrolases include intact and oxidatively damaged
nucleoside triphosphates, dinucleoside polyphosphates,
nucleotide-sugars and dinucleotide enzymes. These
substrates are metabolites or cell signaling molecules
that require regulation during different stages of the
cell cycle or during periods of stress. In general, the
role of the nudix hydrolase is to sanitize the
nucleotide pools and to maintain cell viability, thereby
serving as surveillance & "house-cleaning" enzymes.
Substrate specificity is used to define families within
the superfamily. Differences in substrate specificity
are determined by the N-terminal extension or by
residues in variable loop regions. Mechanistically,
substrate hydrolysis occurs by a nucleophilic
substitution reaction, with variation in the numbers and
roles of divalent cations required.
Length = 129
Score = 46.2 bits (110), Expect = 3e-07
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 80 VLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVE 132
VL+++ + G W G +E+GE+ EA +REV EETGL+ TLL
Sbjct: 17 VLLLRRSDKY-AGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDRG 68
>gnl|CDD|131752 TIGR02705, nudix_YtkD, nucleoside triphosphatase YtkD. The
functional assignment to the proteins of this family is
contentious. Reference challenges the findings of
reference , both in interpretation and in enzyme assay
results. This protein belongs to the nudix family and
shares some sequence identity with E. coli MutT but
appears not to be functionally interchangeable with it
[DNA metabolism, DNA replication, recombination, and
repair].
Length = 156
Score = 46.6 bits (111), Expect = 3e-07
Identities = 17/24 (70%), Positives = 19/24 (79%)
Query: 97 PAGKVEEGETLEEAVKREVLEETG 120
P GKVE GET +EA REV+EETG
Sbjct: 50 PGGKVEPGETSKEAAIREVMEETG 73
>gnl|CDD|234699 PRK00241, nudC, NADH pyrophosphatase; Reviewed.
Length = 256
Score = 47.2 bits (113), Expect = 3e-07
Identities = 16/25 (64%), Positives = 21/25 (84%)
Query: 98 AGKVEEGETLEEAVKREVLEETGLE 122
AG VE GETLE+ V REV+EE+G++
Sbjct: 162 AGFVEVGETLEQCVAREVMEESGIK 186
>gnl|CDD|225373 COG2816, NPY1, NTP pyrophosphohydrolases containing a Zn-finger,
probably nucleic-acid-binding [DNA replication,
recombination, and repair].
Length = 279
Score = 47.3 bits (113), Expect = 3e-07
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 59 PRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEE 118
PR+ V IV +I +L G + L AG VE GETLE+AV REV EE
Sbjct: 141 PRIDPCV--IVA--VIRGDEILLARHPRHF--PGMYSLLAGFVEPGETLEQAVAREVFEE 194
Query: 119 TGLE 122
G++
Sbjct: 195 VGIK 198
>gnl|CDD|239522 cd03430, GDPMH, GDP-mannose glycosyl hydrolase (AKA GDP-mannose
mannosyl hydrolase (GDPMH)) is a member of the Nudix
hydrolase superfamily. This class of enzymes is unique
from other members of the superfamily in two aspects.
First, it contains a modified Nudix signature sequence.
The slight changes to the conserved sequence motif,
GX5EX7REUXEEXGU, where U = I, L or V), are believed to
contribute to the removal of all magnesium binding sites
but one, retaining only the metal site that coordinates
the pyrophosphate of the substrate. Secondly, it is not
a pyrophosphatase that substitutes at a phosphorus;
instead, it hydrolyzes nucleotide sugars such as
GDP-mannose to GDP and mannose, cleaving the
phosphoglycosyl bond by substituting at a carbon
position. GDP-mannose provides mannosyl components for
cell wall synthesis and is required for the synthesis of
other glycosyl donors (such as GDP-fucose and colitose)
for the cell wall. The importance of GDP-sugar hydrolase
activities is thus closely related to the regulation of
cell wall biosynthesis. Enzymes in this family are
believed to regulate the concentration of GDP-mannose
and GDP-glucose in the bacterial cell wall.
Length = 144
Score = 45.8 bits (109), Expect = 4e-07
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 72 VIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEM 123
++ N L+ + G W++P G++ + ETL EA +R +E GLE
Sbjct: 18 IVENEDGQYLLGKRTNRPAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEF 69
>gnl|CDD|239646 cd03674, Nudix_Hydrolase_1, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes
belonging to this superfamily require a divalent cation,
such as Mg2+ or Mn2+, for their activity. They also
contain a highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, U=I, L or V), which forms a structural
motif that functions as a metal binding and catalytic
site. Substrates of nudix hydrolases include intact and
oxidatively damaged nucleoside triphosphates,
dinucleoside polyphosphates, nucleotide-sugars and
dinucleotide enzymes. These substrates are metabolites
or cell signaling molecules that require regulation
during different stages of the cell cycle or during
periods of stress. In general, the role of the nudix
hydrolase is to sanitize the nucleotide pools and to
maintain cell viability, thereby serving as surveillance
& "house-cleaning" enzymes. Substrate specificity is
used to define families within the superfamily.
Differences in substrate specificity are determined by
the N-terminal extension or by residues in variable loop
regions. Mechanistically, substrate hydrolysis occurs by
a nucleophilic substitution reaction, with variation in
the numbers and roles of divalent cations required.
Length = 138
Score = 45.0 bits (107), Expect = 6e-07
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 71 AVIIN-SKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLL 129
A ++N + VL+ K G+W P G ++ E+L EA RE+ EETG+E+ L
Sbjct: 7 AFVVNPDRGKVLLTHHRKL---GSWLQPGGHIDPDESLLEAALRELREETGIELLGLRPL 63
Query: 130 AVETA 134
+V
Sbjct: 64 SVLVD 68
>gnl|CDD|185369 PRK15472, PRK15472, nucleoside triphosphatase NudI; Provisional.
Length = 141
Score = 45.1 bits (107), Expect = 7e-07
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 68 IVMAVIINSKNAVLM--MQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEM 123
++ +I + A L+ M + + + G W L G VE GE +EEA++RE+ EE G ++
Sbjct: 5 TIVCPLIQNDGAYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQL 62
>gnl|CDD|240031 cd04674, Nudix_Hydrolase_16, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes
belonging to this superfamily require a divalent cation,
such as Mg2+ or Mn2+, for their activity and contain a
highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. Substrates of
nudix hydrolases include intact and oxidatively damaged
nucleoside triphosphates, dinucleoside polyphosphates,
nucleotide-sugars and dinucleotide enzymes. These
substrates are metabolites or cell signaling molecules
that require regulation during different stages of the
cell cycle or during periods of stress. In general, the
role of the nudix hydrolase is to sanitize the
nucleotide pools and to maintain cell viability, thereby
serving as surveillance & "house-cleaning" enzymes.
Substrate specificity is used to define families within
the superfamily. Differences in substrate specificity
are determined by the N-terminal extension or by
residues in variable loop regions. Mechanistically,
substrate hydrolysis occurs by a nucleophilic
substitution reaction, with variation in the numbers and
roles of divalent cations required.
Length = 118
Score = 44.0 bits (104), Expect = 1e-06
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 92 GAWYLPAGKVEEGETLEEAVKREVLEETGLEMAP 125
G LP G +E GET ++AV RE+LEETG+ + P
Sbjct: 29 GKLALPGGFIELGETWQDAVARELLEETGVAVDP 62
>gnl|CDD|240041 cd04685, Nudix_Hydrolase_26, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes
belonging to this superfamily requires a divalent
cation, such as Mg2+ or Mn2+, for their activity and
contain a highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. Substrates of
nudix hydrolases include intact and oxidatively damaged
nucleoside triphosphates, dinucleoside polyphosphates,
nucleotide-sugars and dinucleotide enzymes. These
substrates are metabolites or cell signaling molecules
that require regulation during different stages of the
cell cycle or during periods of stress. In general, the
role of the nudix hydrolase is to sanitize the
nucleotide pools and to maintain cell viability, thereby
serving as surveillance & "house-cleaning" enzymes.
Substrate specificity is used to define families within
the superfamily. Differences in substrate specificity
are determined by the N-terminal extension or by
residues in variable loop regions. Mechanistically,
substrate hydrolysis occurs by a nucleophilic
substitution reaction, with variation in the numbers and
roles of divalent cations required.
Length = 133
Score = 43.9 bits (104), Expect = 1e-06
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 94 WYLPAGKVEEGETLEEAVKREVLEETGLEMA 124
W+ P G VE GE+ E+A +RE+ EETG+ +A
Sbjct: 30 WFTPGGGVEPGESPEQAARRELREETGITVA 60
>gnl|CDD|182536 PRK10546, PRK10546, pyrimidine (deoxy)nucleoside triphosphate
pyrophosphohydrolase; Provisional.
Length = 135
Score = 44.0 bits (104), Expect = 2e-06
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 69 VMAVIINSKNAVLMMQE-AKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTT 127
V+A II +L+ Q A S G W GKVE GE+ +A+ RE+ EE G+E
Sbjct: 6 VVAAIIERDGKILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVGE 65
Query: 128 LLA 130
+A
Sbjct: 66 YVA 68
>gnl|CDD|240045 cd04689, Nudix_Hydrolase_30, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes
belonging to this superfamily require a divalent cation,
such as Mg2+ or Mn2+, for their activity and contain a
highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U=I, L or V), which functions as
a metal binding and catalytic site. Substrates of nudix
hydrolases include intact and oxidatively damaged
nucleoside triphosphates, dinucleoside polyphosphates,
nucleotide-sugars and dinucleotide enzymes. These
substrates are metabolites or cell signaling molecules
that require regulation during different stages of the
cell cycle or during periods of stress. In general, the
role of the nudix hydrolase is to sanitize the
nucleotide pools and to maintain cell viability, thereby
serving as surveillance & "house-cleaning" enzymes.
Substrate specificity is used to define families within
the superfamily. Differences in substrate specificity
are determined by the N-terminal extension or by
residues in variable loop regions. Mechanistically,
substrate hydrolysis occurs by a nucleophilic
substitution reaction, with variation in the numbers and
roles of divalent cations required.
Length = 125
Score = 43.5 bits (103), Expect = 2e-06
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 67 YIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPT 126
A++ + N VL+ A+ I ++LP G VE GET E A++RE+ EE G+ ++
Sbjct: 2 LRARAIVR-AGNKVLL---ARVIGQPHYFLPGGHVEPGETAENALRRELQEELGVAVSDG 57
Query: 127 TLL-AVE 132
L A+E
Sbjct: 58 RFLGAIE 64
>gnl|CDD|235436 PRK05379, PRK05379, bifunctional nicotinamide mononucleotide
adenylyltransferase/ADP-ribose pyrophosphatase;
Provisional.
Length = 340
Score = 45.0 bits (107), Expect = 2e-06
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 71 AVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLL 129
AV++ S VL+++ G W LP G +E+ ETL +A RE+ EETGL++ L
Sbjct: 208 AVVVQS-GHVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVLR 265
>gnl|CDD|240038 cd04682, Nudix_Hydrolase_23, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes
belonging to this superfamily require a divalent cation,
such as Mg2+ or Mn2+, for their activity and contain a
highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. Substrates of
nudix hydrolases include intact and oxidatively damaged
nucleoside triphosphates, dinucleoside polyphosphates,
nucleotide-sugars and dinucleotide enzymes. These
substrates are metabolites or cell signaling molecules
that require regulation during different stages of the
cell cycle or during periods of stress. In general, the
role of the nudix hydrolase is to sanitize the
nucleotide pools and to maintain cell viability, thereby
serving as surveillance & "house-cleaning" enzymes.
Substrate specificity is used to define families within
the superfamily. Differences in substrate specificity
are determined by the N-terminal extension or by
residues in variable loop regions. Mechanistically,
substrate hydrolysis occurs by a nucleophilic
substitution reaction, with variation in the numbers and
roles of divalent cations required.
Length = 122
Score = 43.5 bits (103), Expect = 2e-06
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 92 GAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET 133
G W LP G E GET E V RE+LEE GL + + +
Sbjct: 29 GHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRIPWFRV 70
>gnl|CDD|200031 TIGR00586, mutt, mutator mutT protein. All proteins in this family
for which functions are known are involved in repairing
oxidative damage to dGTP (they are 8-oxo-dGTPases). This
family is based on the phylogenomic analysis of JA Eisen
(1999, Ph.D. Thesis, Stanford University). Lowering the
threshold picks up members of MutT superfamily well [DNA
metabolism, DNA replication, recombination, and repair].
Length = 128
Score = 43.3 bits (102), Expect = 3e-06
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 68 IVMAVIINSKNAVLMMQEAKS-ICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMA 124
I + +I N +++ + A + P GK E GET E+AV RE+ EE G+
Sbjct: 6 IAVGIIRNENGEIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQH 63
>gnl|CDD|240042 cd04686, Nudix_Hydrolase_27, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes
belonging to this superfamily require a divalent cation,
such as Mg2+ or Mn2+, for their activity and contain a
highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. Substrates of
nudix hydrolases include intact and oxidatively damaged
nucleoside triphosphates, dinucleoside polyphosphates,
nucleotide-sugars and dinucleotide enzymes. These
substrates are metabolites or cell signaling molecules
that require regulation during different stages of the
cell cycle or during periods of stress. In general, the
role of the nudix hydrolase is to sanitize the
nucleotide pools and to maintain cell viability, thereby
serving as surveillance & "house-cleaning" enzymes.
Substrate specificity is used to define families within
the superfamily. Differences in substrate specificity
are determined by the N-terminal extension or by
residues in variable loop regions. Mechanistically,
substrate hydrolysis occurs by a nucleophilic
substitution reaction, with variation in the numbers and
roles of divalent cations required.
Length = 131
Score = 42.3 bits (100), Expect = 6e-06
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 69 VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETG 120
V A+I+ +L++ + G + P G VE+GE E + RE+ EETG
Sbjct: 3 VRAIILQGDK-ILLLY---TKRYGDYKFPGGGVEKGEDHIEGLIRELQEETG 50
>gnl|CDD|240051 cd04695, Nudix_Hydrolase_36, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes
belonging to this superfamily require a divalent cation,
such as Mg2+ or Mn2+, for their activity and contain a
highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. Substrates of
nudix hydrolases include intact and oxidatively damaged
nucleoside triphosphates, dinucleoside polyphosphates,
nucleotide-sugars and dinucleotide enzymes. These
substrates are metabolites or cell signaling molecules
that require regulation during different stages of the
cell cycle or during periods of stress. In general, the
role of the nudix hydrolase is to sanitize the
nucleotide pools and to maintain cell viability, thereby
serving as surveillance & "house-cleaning" enzymes.
Substrate specificity is used to define families within
the superfamily. Differences in substrate specificity
are determined by the N-terminal extension or by
residues in variable loop regions. Mechanistically,
substrate hydrolysis occurs by a nucleophilic
substitution reaction, with variation in the numbers and
roles of divalent cations required.
Length = 131
Score = 42.1 bits (99), Expect = 8e-06
Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 69 VMAVIINSKNA---VLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGL 121
V V++ S + VL+++ K++ G W AG VE GET +A RE+ EETG+
Sbjct: 2 VSGVLLRSLDKETKVLLLKRVKTL-GGFWCHVAGGVEAGETAWQAALRELKEETGI 56
>gnl|CDD|236516 PRK09438, nudB, dihydroneopterin triphosphate pyrophosphatase;
Provisional.
Length = 148
Score = 42.2 bits (100), Expect = 1e-05
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 72 VIINSKNA-VLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128
V+I + + VLM+Q A W G +EEGET + REV EETG+++ L
Sbjct: 12 VVIYTPDLGVLMLQRADD--PDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQL 67
>gnl|CDD|240021 cd04663, Nudix_Hydrolase_6, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes belong
to this superfamily requires a divalent cation, such as
Mg2+ or Mn2+ for their activity and contain a highly
conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I,
L or V) which functions as metal binding and catalytic
site. Substrates of nudix hydrolase include intact and
oxidatively damaged nucleoside triphosphates,
dinucleoside polyphosphates, nucleotide-sugars and
dinucleotide enzymes. These substrates are metabolites
or cell signaling molecules that require regulation
during different stages of the cell cycle or during
periods of stress. In general, the role of the nudix
hydrolase is to sanitize the nucleotide pools and to
maintain cell viability, thereby serving as surveillance
& "house-cleaning" enzymes. Substrate specificity is
used to define families within the superfamily.
Differences in substrate specificity are determined by
the N-terminal extension or by residues in variable loop
regions. Mechanistically, substrate hydrolysis occurs by
a nucleophilic substitution reaction, with variation in
the numbers and roles of divalent cations required.
Length = 126
Score = 40.6 bits (95), Expect = 3e-05
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 96 LPAGKVEEGETLEEAVKREVLEETGL 121
+ G VE GET E A RE+ EE+GL
Sbjct: 28 IVKGTVEPGETPEAAALRELQEESGL 53
>gnl|CDD|240020 cd04662, Nudix_Hydrolase_5, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes
belonging to this superfamily require a divalent cation,
such as Mg2+ or Mn2+, for their activity and contain a
highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. Substrates of
nudix hydrolases include intact and oxidatively damaged
nucleoside triphosphates, dinucleoside polyphosphates,
nucleotide-sugars and dinucleotide enzymes. These
substrates are metabolites or cell signaling molecules
that require regulation during different stages of the
cell cycle or during periods of stress. In general, the
role of the nudix hydrolase is to sanitize the
nucleotide pools and to maintain cell viability, thereby
serving as surveillance & "house-cleaning" enzymes.
Substrate specificity is used to define families within
the superfamily. Differences in substrate specificity
are determined by the N-terminal extension or by
residues in variable loop regions. Mechanistically,
substrate hydrolysis occurs by a nucleophilic
substitution reaction, with variation in the numbers and
roles of divalent cations required.
Length = 126
Score = 39.0 bits (91), Expect = 1e-04
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 92 GAWYLPAGKVEEGETLEEAVKREVLEETGLE 122
GAW +P G+ EGE A KRE EETG
Sbjct: 33 GAWSIPKGEYTEGEDPLLAAKREFSEETGFC 63
>gnl|CDD|226604 COG4119, COG4119, Predicted NTP pyrophosphohydrolase [DNA
replication, recombination, and repair / General
function prediction only].
Length = 161
Score = 39.1 bits (91), Expect = 1e-04
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 92 GAWYLPAGKVEEGETLEEAVKREVLEETGL 121
GAW +P G+ GE A +RE EE G+
Sbjct: 36 GAWSIPKGEYTGGEDPWLAARREFSEEIGI 65
>gnl|CDD|239644 cd03672, Dcp2p, mRNA decapping enzyme 2 (Dcp2p), the catalytic
subunit, and Dcp1p are the two components of the
decapping enzyme complex. Decapping is a key step in
both general and nonsense-mediated 5'->3' mRNA-decay
pathways. Dcp2p contains an all-alpha helical N-terminal
domain and a C-terminal domain which has the Nudix fold.
While decapping is not dependent on the N-terminus of
Dcp2p, it does affect its efficiency. Dcp1p binds the
N-terminal domain of Dcp2p stimulating the decapping
activity of Dcp2p. Decapping permits the degradation of
the transcript and is a site of numerous control inputs.
It is responsible for nonsense-mediated decay as well as
AU-rich element (ARE)-mediated decay. In addition, it
may also play a role in the levels of mRNA. Enzymes
belonging to the Nudix superfamily require a divalent
cation, such as Mg2+ or Mn2+, for their activity and are
recognized by a highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V).
Length = 145
Score = 38.4 bits (90), Expect = 2e-04
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 71 AVIIN-SKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAP 125
A+I+N + VL+++ KS W P GK+ + E + REV EETG +++
Sbjct: 6 AIILNEDLDKVLLVKGWKS--KS-WSFPKGKINKDEDDHDCAIREVYEETGFDISK 58
>gnl|CDD|240049 cd04693, Nudix_Hydrolase_34, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes
belonging to this superfamily require a divalent cation,
such as Mg2+ or Mn2+, for their activity and contain a
highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. Substrates of
nudix hydrolases include intact and oxidatively damaged
nucleoside triphosphates, dinucleoside polyphosphates,
nucleotide-sugars and dinucleotide enzymes. These
substrates are metabolites or cell signaling molecules
that require regulation during different stages of the
cell cycle or during periods of stress. In general, the
role of the nudix hydrolase is to sanitize the
nucleotide pools and to maintain cell viability, thereby
serving as surveillance & "house-cleaning" enzymes.
Substrate specificity is used to define families within
the superfamily. Differences in substrate specificity
are determined by the N-terminal extension or by
residues in variable loop regions. Mechanistically,
substrate hydrolysis occurs by a nucleophilic
substitution reaction, with variation in the numbers and
roles of divalent cations required.
Length = 127
Score = 38.1 bits (89), Expect = 2e-04
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 68 IVMAVIINSKNAVLMMQ--EAKSICNGAWYLPA-GKVEEGETLEEAVKREVLEETGLEMA 124
+V I NSK +L+ + K G W L G V+ GET A +REV EE GLE+
Sbjct: 2 VVHVCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETST-AAEREVKEELGLELD 60
Query: 125 PT 126
+
Sbjct: 61 FS 62
>gnl|CDD|240024 cd04666, Nudix_Hydrolase_9, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes
belonging to this superfamily require a divalent cation,
such as Mg2+ or Mn2+, for their activity and contain a
highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. Substrates of
nudix hydrolases include intact and oxidatively damaged
nucleoside triphosphates, dinucleoside polyphosphates,
nucleotide-sugars and dinucleotide enzymes. These
substrates are metabolites or cell signaling molecules
that require regulation during different stages of the
cell cycle or during periods of stress. In general, the
role of the nudix hydrolase is to sanitize the
nucleotide pools and to maintain cell viability, thereby
serving as surveillance & "house-cleaning" enzymes.
Substrate specificity is used to define families within
the superfamily. Differences in substrate specificity
are determined by the N-terminal extension or by
residues in variable loop regions. Mechanistically,
substrate hydrolysis occurs by a nucleophilic
substitution reaction, with variation in the numbers and
roles of divalent cations required.
Length = 122
Score = 37.6 bits (88), Expect = 3e-04
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 80 VLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLE 122
VL++ ++ G W +P G E+ E+ EA RE EE G+
Sbjct: 17 VLLVTSRRT---GRWIVPKGGPEKDESPAEAAAREAWEEAGVR 56
>gnl|CDD|182682 PRK10729, nudF, ADP-ribose pyrophosphatase NudF; Provisional.
Length = 202
Score = 38.2 bits (89), Expect = 3e-04
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 98 AGKVEEGETLEEAVKREVLEETGLE 122
AG +EEGE++E+ +RE +EE GL
Sbjct: 88 AGMIEEGESVEDVARREAIEEAGLI 112
>gnl|CDD|240047 cd04691, Nudix_Hydrolase_32, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes
belonging to this superfamily require a divalent cation,
such as Mg2+ or Mn2+, for their activity and contain a
highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. Substrates of
nudix hydrolases include intact and oxidatively damaged
nucleoside triphosphates, dinucleoside polyphosphates,
nucleotide-sugars and dinucleotide enzymes. These
substrates are metabolites or cell signaling molecules
that require regulation during different stages of the
cell cycle or during periods of stress. In general, the
role of the nudix hydrolase is to sanitize the
nucleotide pools and to maintain cell viability, thereby
serving as surveillance & "house-cleaning" enzymes.
Substrate specificity is used to define families within
the superfamily. Differences in substrate specificity
are determined by the N-terminal extension or by
residues in variable loop regions. Mechanistically,
substrate hydrolysis occurs by a nucleophilic
substitution reaction, with variation in the numbers and
roles of divalent cations required.
Length = 117
Score = 36.7 bits (85), Expect = 7e-04
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 76 SKNAVLMMQ--EAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLL 129
S + VL+ + K+ G +P G +E GE+ EEA+ REV EE G++ T L
Sbjct: 9 SDDKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTYL 64
>gnl|CDD|239518 cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the
Nudix hydrolase superfamily, functions to catalyze the
elimination of oxidized inactive CoA, which can inhibit
CoA-utilizing enzymes. The need of CoAses mainly arises
under conditions of oxidative stress. CoAse has a
conserved Nudix fold and requires a single divalent
cation for catalysis. In addition to a signature Nudix
motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val,
CoAse contains an additional motif upstream called the
NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated
to be involved in CoA recognition. CoA plays a central
role in lipid metabolism. It is involved in the initial
steps of fatty acid sythesis in the cytosol, in the
oxidation of fatty acids and the citric acid cycle in
the mitochondria, and in the oxidation of long-chain
fatty acids in peroxisomes. CoA has the important role
of activating fatty acids for further modification into
key biological signalling molecules.
Length = 157
Score = 36.7 bits (86), Expect = 0.001
Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 96 LPAGKVEEG-ETLEEAVKREVLEETGLEMAPTTLL 129
P GKV+ G E RE EE GL +L
Sbjct: 36 FPGGKVDPGDEDPVATALREAEEEIGLPPDSVEVL 70
>gnl|CDD|239642 cd03670, ADPRase_NUDT9, ADP-ribose pyrophosphatase (ADPRase)
catalyzes the hydrolysis of ADP-ribose to AMP and
ribose-5-P. Like other members of the Nudix hydrolase
superfamily of enzymes, it is thought to require a
divalent cation, such as Mg2+, for its activity. It also
contains a 23-residue Nudix motif (GX5EX7REUXEEXGU,
where U = I, L or V) which functions as a metal binding
site/catalytic site. In addition to the Nudix motif,
there are additional conserved amino acid residues,
distal from the signature sequence, that correlate with
substrate specificity. In humans, there are four
distinct ADPRase activities, three putative cytosolic
(ADPRase-I, -II, and -Mn) and a single mitochondrial
enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It
can be distinugished from the cytosolic ADPRase by a
N-terminal target sequence unique to mitochondrial
ADPRase. NUDT9 functions as a monomer.
Length = 186
Score = 36.7 bits (85), Expect = 0.001
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 76 SKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEE 118
S +L K +G W +P G V+ GE + +KRE EE
Sbjct: 44 SGKPILQFVAIKRPDSGEWAIPGGMVDPGEKISATLKREFGEE 86
>gnl|CDD|237966 PRK15434, PRK15434, GDP-mannose mannosyl hydrolase NudD;
Provisional.
Length = 159
Score = 36.7 bits (85), Expect = 0.001
Identities = 20/69 (28%), Positives = 36/69 (52%)
Query: 55 ESFVPRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKRE 114
E F ++ T + ++ NS+ L+ + G W++P G+V++ ETLE A +R
Sbjct: 6 EDFATVVRSTPLISLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERL 65
Query: 115 VLEETGLEM 123
+ E GL +
Sbjct: 66 TMAELGLRL 74
>gnl|CDD|183303 PRK11762, nudE, adenosine nucleotide hydrolase NudE; Provisional.
Length = 185
Score = 35.2 bits (82), Expect = 0.004
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 96 LPAGKVEEGETLEEAVKREVLEETGL 121
P G ++ GET EA RE+ EE G
Sbjct: 78 FPKGLIDPGETPLEAANRELKEEVGF 103
>gnl|CDD|240019 cd04661, MRP_L46, Mitochondrial ribosomal protein L46 (MRP L46) is
a component of the large subunit (39S) of the mammalian
mitochondrial ribosome and a member of the Nudix
hydrolase superfamily. MRPs are thought to be involved
in the maintenance of the mitochondrial DNA. In general,
members of the Nudix superfamily require a divalent
cation, such as Mg2+ or Mn2+, for activity and contain
the Nudix motif, a highly conserved 23-residue block
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. MRP L46 appears
to contain a modified nudix motif.
Length = 132
Score = 34.3 bits (79), Expect = 0.007
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 76 SKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMA 124
VL++Q+ K W LP GK EEGETL + +R + E G +
Sbjct: 11 DDTLVLLVQQ-KVGSQNHWILPQGKREEGETLRQTAERTLKELCGNNLK 58
>gnl|CDD|240053 cd04697, Nudix_Hydrolase_38, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes
belonging to this superfamily require a divalent cation,
such as Mg2+ or Mn2+, for their activity and contain a
highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. Substrates of
nudix hydrolases include intact and oxidatively damaged
nucleoside triphosphates, dinucleoside polyphosphates,
nucleotide-sugars and dinucleotide enzymes. These
substrates are metabolites or cell signaling molecules
that require regulation during different stages of the
cell cycle or during periods of stress. In general, the
role of the nudix hydrolase is to sanitize the
nucleotide pools and to maintain cell viability, thereby
serving as surveillance & "house-cleaning" enzymes.
Substrate specificity is used to define families within
the superfamily. Differences in substrate specificity
are determined by the N-terminal extension or by
residues in variable loop regions. Mechanistically,
substrate hydrolysis occurs by a nucleophilic
substitution reaction, with variation in the numbers and
roles of divalent cations required.
Length = 126
Score = 33.2 bits (76), Expect = 0.017
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 66 TYIVMAVIINSKNAVLMMQ--EAKSICNGAWYLPAGK-VEEGETLEEAVKREVLEETGLE 122
TYI + NS+ + + + K C G W + G V+ GE+ + +RE+ EE G++
Sbjct: 3 TYIF---VFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGID 59
Query: 123 MAPTT 127
T
Sbjct: 60 GVQLT 64
>gnl|CDD|129162 TIGR00052, TIGR00052, nudix-type nucleoside diphosphatase,
YffH/AdpP family. Members of this family include
proteins of about 200 amino acids, including the
recently characterized nudix hydrolase YffH, shows to be
highly active as a GDP-mannose pyrophosphatase. It also
includes the C-terminal half of a 361-amino acid
protein, TrgB from Rhodobacter sphaeroides, shown
experimentally to help confer tellurite resistance. This
model also hits a region near the C-terminus of a
1092-amino acid protein of C. elegans [Unknown function,
Enzymes of unknown specificity].
Length = 185
Score = 33.3 bits (76), Expect = 0.017
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 96 LPAGKVEEGETLEEAVKREVLEETGLEMAPTT 127
L AG VE+GE+ E+ +RE +EE G ++
Sbjct: 81 LSAGMVEKGESPEDVARREAIEEAGYQVKNLR 112
>gnl|CDD|240048 cd04692, Nudix_Hydrolase_33, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes
belonging to this superfamily require a divalent cation,
such as Mg2+ or Mn2+, for their activity and contain a
highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. Substrates of
nudix hydrolases include intact and oxidatively damaged
nucleoside triphosphates, dinucleoside polyphosphates,
nucleotide-sugars and dinucleotide enzymes. These
substrates are metabolites or cell signaling molecules
that require regulation during different stages of the
cell cycle or during periods of stress. In general, the
role of the nudix hydrolase is to sanitize the
nucleotide pools and to maintain cell viability, thereby
serving as surveillance & "house-cleaning" enzymes.
Substrate specificity is used to define families within
the superfamily. Differences in substrate specificity
are determined by the N-terminal extension or by
residues in variable loop regions. Mechanistically,
substrate hydrolysis occurs by a nucleophilic
substitution reaction, with variation in the numbers and
roles of divalent cations required.
Length = 144
Score = 31.1 bits (71), Expect = 0.089
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 98 AGKVEEGETLEEAVKREVLEETGLEMAPTTL 128
AG + GET E RE+ EE GL+++ L
Sbjct: 40 AGHILAGETPLEDGIRELEEELGLDVSADDL 70
>gnl|CDD|235156 PRK03759, PRK03759, isopentenyl-diphosphate delta-isomerase;
Provisional.
Length = 184
Score = 28.8 bits (65), Expect = 0.69
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 104 GETLEEAVKREVLEETGLEMAPTTLLAV 131
GE+LE+AV R EE G+E T L V
Sbjct: 75 GESLEDAVIRRCREELGVE--ITDLELV 100
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 27.8 bits (62), Expect = 1.6
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 83 MQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVETAR 135
MQE +++C+ L G+V ++E R VL LE L +E
Sbjct: 193 MQEVEALCDRVIVLHKGEVVLEGSIEALDARTVLR--NLEEIFAFALKLEEGT 243
>gnl|CDD|239648 cd03676, Nudix_hydrolase_3, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes belong
to this superfamily requires a divalent cation, such as
Mg2+ or Mn2+, for their activity and contain a highly
conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where
U = I, L or V), which functions as a metal binding and
catalytic site. Substrates of nudix hydrolases include
intact and oxidatively damaged nucleoside triphosphates,
dinucleoside polyphosphates, nucleotide-sugars and
dinucleotide enzymes. These substrates are metabolites
or cell signaling molecules that require regulation
during different stages of the cell cycle or during
periods of stress. In general, the role of the nudix
hydrolase is to sanitize the nucleotide pools and to
maintain cell viability, thereby serving as surveillance
& "house-cleaning" enzymes. Substrate specificity is
used to define families within the superfamily.
Differences in substrate specificity are determined by
the N-terminal extension or by residues in variable loop
regions. Mechanistically, substrate hydrolysis occurs by
a nucleophilic substitution reaction, with variation in
the numbers and roles of divalent cations required.
Length = 180
Score = 27.2 bits (61), Expect = 2.0
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 98 AGKVEEGETLEEAVKREVLEETGLE 122
AG + GE EE + +E EE GL
Sbjct: 71 AGGLGHGEGPEETLVKECDEEAGLP 95
>gnl|CDD|185291 PRK15393, PRK15393, NUDIX hydrolase YfcD; Provisional.
Length = 180
Score = 27.5 bits (61), Expect = 2.2
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 10/71 (14%)
Query: 60 RLKKTVTYIVMAVIINSKNAVLMMQ--EAKSICNGAWYLPA---GKVEEGETLEEAVKRE 114
L+ TYIV + + +L+ + E K G L A G V+ GE L E+ +RE
Sbjct: 34 CLRHRATYIV---VHDGMGKILVQRRTETKDFLPG--MLDATAGGVVQAGEQLLESARRE 88
Query: 115 VLEETGLEMAP 125
EE G+ P
Sbjct: 89 AEEELGIAGVP 99
>gnl|CDD|233382 TIGR01372, soxA, sarcosine oxidase, alpha subunit family,
heterotetrameric form. This model describes the alpha
subunit of a family of known and putative
heterotetrameric sarcosine oxidases. Five operons of
such oxidases are found in Mesorhizobium loti and three
in Agrobacterium tumefaciens, a high enough copy number
to suggest that not all members are share the same
function. The model is designated as subfamily rather
than equivalog for this reason.Sarcosine oxidase
catalyzes the oxidative demethylation of sarcosine to
glycine. The reaction converts tetrahydrofolate to
5,10-methylene-tetrahydrofolate. The enzyme is known in
monomeric and heterotetrameric (alpha,beta,gamma,delta)
forms [Energy metabolism, Amino acids and amines].
Length = 985
Score = 27.4 bits (61), Expect = 3.1
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 86 AKSICNGAWYLPAGKVEEGETLEEAVKREVL 116
A G W P GE ++EAV RE
Sbjct: 610 AVFEDVGQWKRPWYYPRRGEDMDEAVARECK 640
>gnl|CDD|239218 cd02885, IPP_Isomerase, Isopentenyl diphosphate (IPP) isomerase, a
member of the Nudix hydrolase superfamily, is a key
enzyme in the isoprenoid biosynthetic pathway.
Isoprenoids comprise a large family of natural products
including sterols, carotenoids, dolichols and prenylated
proteins. These compounds are synthesized from two
precursors: isopentenyl diphosphate (IPP) and
dimethylallyl diphosphate (DMAPP). IPP isomerase
catalyzes the interconversion of IPP and DMAPP by a
stereoselective antarafacial transposition of hydrogen.
The enzyme requires one Mn2+ or Mg2+ ion in its active
site to fold into an active conformation and also
contains the Nudix motif, a highly conserved 23-residue
block (GX5EX7REUXEEXGU, where U = I, L or V), that
functions as a metal binding and catalytic site. The
metal binding site is present within the active site and
plays structural and catalytical roles. IPP isomerase is
well represented in several bacteria, archaebacteria and
eukaryotes, including fungi, mammals and plants. Despite
sequence variations (mainly at the N-terminus), the core
structure is highly conserved.
Length = 165
Score = 26.4 bits (59), Expect = 4.0
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 104 GETLEEAVKREVLEETGLEMAPT 126
GE +++A +R + EE G+
Sbjct: 71 GEGVKDAAQRRLREELGITGDLL 93
>gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide
oxidoreductase family protein. Members of this protein
family include N-terminal sequence regions of
(probable) bifunctional proteins whose C-terminal
sequences are SelD, or selenide,water dikinase, the
selenium donor protein necessary for selenium
incorporation into protein (as selenocysteine), tRNA
(as 2-selenouridine), or both. However, some members of
this family occur in species that do not show selenium
incorporation, and the function of this protein family
is unknown.
Length = 364
Score = 26.5 bits (59), Expect = 4.6
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 6/61 (9%)
Query: 1 MYRYSKNIMANHE-AIITPVLENIFSGKV-----CHDGEDQCDYDLTEQADFAPARGVIP 54
+ R++ + +I P +SG + H D+ DL A A AR VI
Sbjct: 15 LRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIA 74
Query: 55 E 55
E
Sbjct: 75 E 75
>gnl|CDD|233137 TIGR00811, sit, silicon transporter. Marine diatoms such as
Cylindrotheca fusiformis encode at least six silicon
transport protein homologues which exhibit similar size
and topology. One characterized member of the family
(Sit1) functions in the energy-dependent uptake of
either Silicic acid [Si(OH)4] or Silicate [Si(OH)3O-] by
a Na+ symport mechanism. The system is found in marine
diatoms which make their "glass houses" out of silicon
[Transport and binding proteins, Other].
Length = 545
Score = 26.5 bits (58), Expect = 5.5
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 8/36 (22%)
Query: 61 LKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYL 96
L + YIV+ ++ ++ EA IC GAW+L
Sbjct: 388 LSNPIVYIVLRIV--------LLIEATGICAGAWFL 415
>gnl|CDD|206040 pfam13869, NUDIX_2, Nucleotide hydrolase. Nudix hydrolases are
found in all classes of organism and hydrolyse a wide
range of organic pyrophosphates, including nucleoside
di- and triphosphates, di-nucleoside and
diphospho-inositol polyphosphates, nucleotide sugars and
RNA caps, with varying degrees of substrate specificity.
Length = 188
Score = 26.0 bits (58), Expect = 5.8
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 69 VMAVIINSKNA---VLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKR 113
V V++ ++ VL++Q I N + LP G++ GE E +KR
Sbjct: 46 VEGVLLVHRHGHPHVLLLQ----IGNTFFKLPGGRLRPGEDEIEGLKR 89
>gnl|CDD|169390 PRK08340, PRK08340, glucose-1-dehydrogenase; Provisional.
Length = 259
Score = 26.3 bits (58), Expect = 6.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 102 EEGETLEEAVKREVLEETGL 121
E G + EE +REVLE T L
Sbjct: 199 ERGVSFEETWEREVLERTPL 218
>gnl|CDD|226571 COG4086, COG4086, Predicted secreted protein [Function unknown].
Length = 299
Score = 25.9 bits (57), Expect = 7.4
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 61 LKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETG 120
+KK I + V+I V S+ + P V GE L E K+++L+E G
Sbjct: 1 MKKVRIEITILVVIAILLLVAAAYPEVSLADATVGRPI--VTLGEDLSETQKQQLLKEMG 58
Query: 121 LEMAPTTLLAVETA 134
++ V
Sbjct: 59 VDPDSADTKIVTAE 72
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 26.1 bits (58), Expect = 7.4
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 12/70 (17%)
Query: 72 VIINSKNAVLMMQEAKSICNGAWYLPAGK-VEEGETLE------EAVKREVLEETGLEMA 124
V+I + M+ K IC+ L G+ VEEG E A+ +E + ET
Sbjct: 196 VLITHE-----MEVVKRICDRVAVLDQGRLVEEGTVSEVFANPKHAITQEFIGETLEIDL 250
Query: 125 PTTLLAVETA 134
P LL +
Sbjct: 251 PEELLERLES 260
>gnl|CDD|220585 pfam10123, Mu-like_Pro, Mu-like prophage I protein. Members of
this family of proteins comprise various viral Mu-like
prophage I proteins.
Length = 326
Score = 25.8 bits (57), Expect = 8.0
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
Query: 64 TVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEM 123
V ++ A + N + M ++ + P + E E LE+ + L +
Sbjct: 112 RVLELLSAALTNRPA-LDGMDPLAALAALSQQSPQEETEMNELLEKLLAALGLAADATDE 170
Query: 124 APTTLLA 130
T LA
Sbjct: 171 DLTAALA 177
>gnl|CDD|239631 cd03576, NTR_PCOLCE, NTR domain, PCOLCE subfamily; Procollagen
C-endopeptidase enhancers (PCOLCEs) are extracellular
matrix proteins that enhance the activity of procollagen
C-proteases, by binding to the procollagen I C-peptide.
They contain a C-terminal NTR domain, which have been
suggested to possess inhibitory functions towards
specific serine proteases but not towards metzincins,
which are inhibited by the related TIMPs.
Length = 124
Score = 25.4 bits (56), Expect = 8.7
Identities = 7/44 (15%), Positives = 17/44 (38%)
Query: 39 DLTEQADFAPARGVIPESFVPRLKKTVTYIVMAVIINSKNAVLM 82
+T+ + + P L++ + YI+M + V+
Sbjct: 57 AITQAGKTMSVKITVVCKQCPLLRRGLNYILMGQVDEEGRGVIP 100
>gnl|CDD|236524 PRK09454, ugpQ, cytoplasmic glycerophosphodiester
phosphodiesterase; Provisional.
Length = 249
Score = 25.7 bits (57), Expect = 9.7
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Query: 92 GAWYLPAGKVEEGETLEEAVKREVLEETGL----EMAPTTLLAVETAR 135
G+W+ A E TL + R G+ E+ PTT ET R
Sbjct: 83 GSWFSAAFAGEPLPTLSQVAAR--CRAHGMAANIEIKPTTGREAETGR 128
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.132 0.376
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,859,554
Number of extensions: 603132
Number of successful extensions: 660
Number of sequences better than 10.0: 1
Number of HSP's gapped: 653
Number of HSP's successfully gapped: 98
Length of query: 135
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 48
Effective length of database: 7,078,804
Effective search space: 339782592
Effective search space used: 339782592
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.1 bits)