RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10892
(135 letters)
>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18;
NUDT18, NXR1, nucleotide hydrolase, hydrolase,
structural genomics; 2.10A {Homo sapiens}
Length = 156
Score = 102 bits (255), Expect = 7e-29
Identities = 41/80 (51%), Positives = 57/80 (71%)
Query: 56 SFVPRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREV 115
RL+K V Y+V+AV ++ ++ VL++QEAK C G+WYLPAG++E GET+ EA++REV
Sbjct: 10 PAPVRLRKNVCYVVLAVFLSEQDEVLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREV 69
Query: 116 LEETGLEMAPTTLLAVETAR 135
EE GL P TLL+VE
Sbjct: 70 KEEAGLHCEPETLLSVEERG 89
>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure
initiative, midwest center for structural genomics,
MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP:
d.113.1.1
Length = 153
Score = 86.8 bits (215), Expect = 6e-23
Identities = 21/68 (30%), Positives = 33/68 (48%)
Query: 68 IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTT 127
+ +A +I + L+++E PAG +E GE++ +A REVLEETG P
Sbjct: 9 VTVAAVIEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEV 68
Query: 128 LLAVETAR 135
L +
Sbjct: 69 LTGIYHWT 76
>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2,
protein structure INI NEW YORK SGX research center for
structural genomics; 1.70A {Methanosarcina mazei}
Length = 153
Score = 85.1 bits (211), Expect = 3e-22
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 60 RLKKTVTYIVMAVIINSKNAVLMMQEAKS--ICNGAWYLPAGKVEEGETLEEAVKREVLE 117
L+K V A+I N K L+++ +++ G W LP GKV E+L+E V REV E
Sbjct: 2 SLEKPYIISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWE 61
Query: 118 ETGLEMAPTTLLAVET 133
ETG+ M P +
Sbjct: 62 ETGITMVPGDIAGQVN 77
>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix,
hydrolase, GFG, GFG-1, FGF2AS, structural GENO
structural genomics consortium, SGC; HET: FLC; 1.70A
{Homo sapiens}
Length = 199
Score = 83.4 bits (206), Expect = 4e-21
Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Query: 54 PESFVPRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKR 113
+ + V V + + +++ + ++ W P G E E + + R
Sbjct: 16 ENLYFQSMSHQV--GVAGAVFDESTRKILVVQDRNKLKNMWKFPGGLSEPEEDIGDTAVR 73
Query: 114 EVLEETGLEMAPTTLLAVET 133
EV EETG++ ++L++
Sbjct: 74 EVFEETGIKSEFRSVLSIRQ 93
>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP
binding, dephosphorylation; 2.50A {Escherichia coli}
PDB: 3dku_A
Length = 153
Score = 82.1 bits (203), Expect = 5e-21
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 67 YIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPT 126
++ +A +++++ L+++E + W PAG +E ETL EA RE+ EETG+ P
Sbjct: 5 HVTVACVVHAEGKFLVVEETIN-GKALWNQPAGHLEADETLVEAAARELWEETGISAQPQ 63
Query: 127 TLLAVET 133
+ +
Sbjct: 64 HFIRMHQ 70
>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich,
structural genomics, BSGC structure funded by NIH; 1.39A
{Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A
1su2_A* 1sz3_A*
Length = 159
Score = 79.8 bits (197), Expect = 4e-20
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 69 VMAVIINSKNAVLMMQEA----KSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMA 124
V++N + +L++QE G W++P+G VE+GE ++A RE EETGL +
Sbjct: 16 AGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVR 75
Query: 125 PTTLLAVETAR 135
P L R
Sbjct: 76 PVKFLGAYLGR 86
>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix
Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP:
d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*
Length = 160
Score = 78.8 bits (194), Expect = 9e-20
Identities = 21/75 (28%), Positives = 37/75 (49%)
Query: 54 PESFVPRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKR 113
E F ++ T + ++ NS+ L+ + G W++P G+V++ ETLE A +R
Sbjct: 6 QEDFATVVRSTPLVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFER 65
Query: 114 EVLEETGLEMAPTTL 128
+ E GL + T
Sbjct: 66 LTMAELGLRLPITAG 80
>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein
structure initiative, midwest CENT structural genomics,
MCSG; 1.63A {Streptococcus pneumoniae}
Length = 154
Score = 74.7 bits (184), Expect = 3e-18
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 71 AVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLA 130
+I + +L+ ++ G +Y G ++ E+ E+AV REV EE G++ L
Sbjct: 23 TALIVQNHKLLVTKD-----KGKYYTIGGAIQVNESTEDAVVREVKEELGVKAQAGQLAF 77
Query: 131 V 131
V
Sbjct: 78 V 78
>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.50A
{Burkholderia pseudomallei}
Length = 157
Score = 74.3 bits (183), Expect = 4e-18
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 68 IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTT 127
+ I +L+++ ++ G W LP GKV+ E +E AV RE+ EE G+ + T
Sbjct: 30 VGCGAAIVRDGRILLIKRKRAPEAGCWGLPGGKVDWLEPVERAVCREIEEELGIALERAT 89
Query: 128 LLAV 131
LL V
Sbjct: 90 LLCV 93
>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative
II(PSI II), NYSGXRC, structural genomics; 2.55A
{Bacillus thuringiensis str}
Length = 171
Score = 74.0 bits (182), Expect = 9e-18
Identities = 29/64 (45%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 68 IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTT 127
V ++I VL++++ + N W LP G+VE GETLEEA+ RE+ EETGLE+
Sbjct: 25 RVTGILIE-DEKVLLVKQKVA--NRDWSLPGGRVENGETLEEAMIREMREETGLEVKIKK 81
Query: 128 LLAV 131
LL V
Sbjct: 82 LLYV 85
>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis,
structural genomics, PSI, structure initiative; HET:
1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1
Length = 148
Score = 72.5 bits (178), Expect = 2e-17
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Query: 62 KKTVTYI----VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLE 117
++T+TY ++ +N +++ +A NGA++LP G++E ET EEA+ REVLE
Sbjct: 10 EETLTYQTRYAAYIIVSKPENNTMVLVQAP---NGAYFLPGGEIEGTETKEEAIHREVLE 66
Query: 118 ETGLEMAPTTLLAV 131
E G+ + L
Sbjct: 67 ELGISVEIGCYLGE 80
>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II),
NYSGXRC, 11180K, structural genomics; 2.00A
{Lactobacillus brevis atcc 367}
Length = 161
Score = 72.7 bits (179), Expect = 2e-17
Identities = 20/76 (26%), Positives = 27/76 (35%)
Query: 59 PRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEE 118
R + ++ V VL+ + P G VE GE A REV EE
Sbjct: 4 TRTQPVELVTMVMVTDPETQRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEE 63
Query: 119 TGLEMAPTTLLAVETA 134
TGL ++ T
Sbjct: 64 TGLRLSGVTFCGTCEW 79
>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer,
putative NUDI hydrolase, structural genomics, unknown
function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1
PDB: 1jrk_A 1k26_A
Length = 156
Score = 72.6 bits (178), Expect = 2e-17
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 68 IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTT 127
IV + ++ VL+++ + G + P G VE ET EAVKRE EETG+ + P
Sbjct: 2 IVTSGVLVENGKVLLVKHKR---LGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIG 58
Query: 128 LLAVETA 134
Sbjct: 59 FTYGIID 65
>3eds_A MUTT/nudix family protein; MUT/nudix protein, protein structure
initiative II(PSI II), nysgxrc; 1.76A {Bacillus
thuringiensis str} PDB: 3smd_A
Length = 153
Score = 70.2 bits (172), Expect = 1e-16
Identities = 28/63 (44%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 69 VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128
V AVI N + +L W LPAG +E GET EEAV REV EETGL++
Sbjct: 24 VAAVIKNEQGEILFQYPG----GEYWSLPAGAIELGETPEEAVVREVWEETGLKVQVKKQ 79
Query: 129 LAV 131
V
Sbjct: 80 KGV 82
>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2,
protein structure initiative; 2.50A {Bacillus
halodurans}
Length = 188
Score = 71.3 bits (175), Expect = 1e-16
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 66 TYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAP 125
V I+ + VL++Q+ + G W P GK+E GE++ E VKRE EETG+ +
Sbjct: 3 LQRVTNCIVVDHDQVLLLQKPR---RGWWVAPGGKMEAGESILETVKREYWEETGITVKN 59
Query: 126 TTLLAV 131
L +
Sbjct: 60 PELKGI 65
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei
structure initiative; 2.00A {Nitrosomonas europaea atcc
19718}
Length = 189
Score = 70.1 bits (172), Expect = 4e-16
Identities = 23/64 (35%), Positives = 33/64 (51%)
Query: 68 IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTT 127
+++ I +N VL+ + A + G W LPAG +E ETL + RE LEE +
Sbjct: 41 VIVGCIPEWENKVLLCKRAIAPYRGKWTLPAGFMENNETLVQGAARETLEEANARVEIRE 100
Query: 128 LLAV 131
L AV
Sbjct: 101 LYAV 104
>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA
exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus
cereus} PDB: 3q4i_A
Length = 205
Score = 69.7 bits (171), Expect = 7e-16
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Query: 54 PESFVPRLKKTVTY----IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEE 109
E Y + + ++ +L ++E +G W LP G + G T E
Sbjct: 51 WEVVEKLFASETGYQTPKVDIRAVVFQNEKLLFVKEK---SDGKWALPGGWADVGYTPTE 107
Query: 110 AVKREVLEETGLEMAPTTLLAV 131
+EV EETG E+ LLA+
Sbjct: 108 VAAKEVFEETGYEVDHFKLLAI 129
>2b06_A MUTT/nudix family protein; structural genomics, P protein structure
initiative, midwest center for structural genomics,
MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1
Length = 155
Score = 67.8 bits (166), Expect = 2e-15
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
Query: 59 PRLKKTVTYIVMAVIINSKNAVLMMQEAKSICN-GAWYLPAGKVEEGETLEEAVKREVLE 117
R + T+ + + V+M A + P G VE E E+V RE+ E
Sbjct: 2 SRSQLTILTNICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYE 61
Query: 118 ETGLEMAPTTLLAVET 133
ETGL + L+ ++
Sbjct: 62 ETGLTIQNPQLVGIKN 77
>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2,
protein structure initiative; 1.70A {Chromobacterium
violaceum}
Length = 163
Score = 67.6 bits (165), Expect = 2e-15
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Query: 59 PRLKKTVTYIVMA-VIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLE 117
+ A II + VL+ G + LP GK GE +A+ RE+ E
Sbjct: 7 KNERLPSDLARRATAIIEMPDGVLVTASR----GGRYNLPGGKANRGELRSQALIREIRE 62
Query: 118 ETGLEMAPTTLLAV 131
ETGL + L
Sbjct: 63 ETGLRINSMLYLFD 76
>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics,
joint center for structural genomics, J protein
structure initiative; 2.27A {Streptococcus suis}
Length = 206
Score = 66.4 bits (162), Expect = 1e-14
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 68 IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTT 127
+ I ++ +L++QE +G W LP G + +++++ V +EV EE GL++
Sbjct: 71 LDTRAAIFQEDKILLVQEN----DGLWSLPGGWCDVDQSVKDNVVKEVKEEAGLDVEAQR 126
Query: 128 LLAV 131
++A+
Sbjct: 127 VVAI 130
>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica
serovar typhimurium STR. unknown function; HET: PO4;
1.75A {Salmonella enterica subsp} PDB: 3n77_A
Length = 165
Score = 65.7 bits (160), Expect = 1e-14
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 68 IVMAVIINSKNAVLMMQ--EAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAP 125
++ +I + L+ + + + + G W L G VE GE +EEA++RE+ EE G ++
Sbjct: 29 TIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLIL 88
Query: 126 TTLLAV 131
+ +
Sbjct: 89 SDITPW 94
>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER
HB8, hydrolase, riken structural genomics/proteomics
initia RSGI; 1.70A {Thermus thermophilus} SCOP:
d.113.1.1 PDB: 1vc8_A 1vc9_A*
Length = 126
Score = 64.2 bits (157), Expect = 2e-14
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 71 AVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLA 130
V+ N+K VL++++ G W P G E GE+LEEA REV EETG+ L
Sbjct: 7 GVVFNAKREVLLLRDR----MGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLY 62
Query: 131 V 131
Sbjct: 63 P 63
>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics,
structural genomics consortium, SGC, NU MUTT-like,
hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB:
1iry_A 3zr0_A* 3zr1_A
Length = 176
Score = 64.3 bits (157), Expect = 4e-14
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 71 AVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLA 130
V++ VL+ + + G W GKV+EGET+E+ +RE+ EE+GL + +
Sbjct: 29 LVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVDALHKVG 88
Query: 131 V 131
Sbjct: 89 Q 89
>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious
diseases, hydrol structural genomics; 2.10A {Bartonella
henselae}
Length = 158
Score = 63.9 bits (156), Expect = 5e-14
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 61 LKKTVTYIVMAVIINSKNAVLMMQ-EAKSICNGAWYLPAGKVEEGETLEEAVKREVLEET 119
+K ++ +V +++ N VL+ Q G W P GKVE+GET E ++ RE+ EE
Sbjct: 24 IKSSLLIVVACALLDQDNRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEEL 83
Query: 120 GLEMAPTTLLAVETAR 135
G+ + L + A
Sbjct: 84 GVHVQADNLFPLTFAS 99
>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural
genomics, NPPSFA, national on protein structural and
functional analyses; 1.80A {Aquifex aeolicus}
Length = 139
Score = 62.7 bits (153), Expect = 9e-14
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 64 TVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEM 123
I+ + +++++ LP G VE GE +EEA RE+ EETGLE+
Sbjct: 11 ATDVIIRLWDGENFKGIVLIERKYP--PVGLALPGGFVEVGERVEEAAAREMREETGLEV 68
Query: 124 APTTLLAV 131
L+ V
Sbjct: 69 RLHKLMGV 76
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual
domains, hydrolase; HET: AMP; 2.30A {Francisella
tularensis} PDB: 2r5w_B
Length = 352
Score = 65.4 bits (159), Expect = 1e-13
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 68 IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTT 127
+ + ++ + +LM+Q W LP G +E ET+ +A+ RE+ EET + +
Sbjct: 209 VTVDALVIVNDHILMVQRKAHPGKDLWALPGGFLECDETIAQAIIRELFEETNINLTHEQ 268
Query: 128 LLAV 131
L
Sbjct: 269 LAIA 272
>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR
{Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A*
1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*
Length = 129
Score = 62.2 bits (152), Expect = 1e-13
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 68 IVMAVIINSKNAVLMMQ-EAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPT 126
I + +I N N + + + A + P GK+E GET E+AV RE+ EE G+
Sbjct: 6 IAVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITPQHF 65
Query: 127 TLL 129
+L
Sbjct: 66 SLF 68
>2pbt_A AP4A hydrolase; nudix protein, diadenosine polyphosphate,
structural genomics, NPPSFA; HET: PGE; 1.80A {Aquifex
aeolicus} PDB: 2pq1_A* 3i7u_A* 3i7v_A*
Length = 134
Score = 61.8 bits (151), Expect = 2e-13
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 72 VIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV 131
++ VL+++ + W P G +E GE EE REV EETG++ +
Sbjct: 9 GVLFKDGEVLLIKTP----SNVWSFPKGNIEPGEKPEETAVREVWEETGVKGEILDYIGE 64
>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT
NEW YORK SGX research center for structural genomics,
nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum}
Length = 144
Score = 61.9 bits (151), Expect = 2e-13
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 61 LKKTVTYIVMAVIINSKNAVLMMQ-EAKSICNGAWYLPAGKVEEGETLEEAVKREVLEET 119
L + + A +I+ VL+ Q G W P GK+E GET E A+ RE+ EE
Sbjct: 3 LGLPILLVTAAALIDPDGRVLLAQRPPGKSLAGLWEFPGGKLEPGETPEAALVRELAEEL 62
Query: 120 GLEMAPTTLLAVETAR 135
G++ + L + A
Sbjct: 63 GVDTRASCLAPLAFAS 78
>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay,
cytoplasm, hydrolase, manganese, metal-binding, mRNA
processing; NMR {Saccharomyces cerevisiae}
Length = 146
Score = 61.0 bits (148), Expect = 4e-13
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 62 KKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGL 121
KK++ A+ + + +L++Q + + +W P GK+ + E + REV EE G
Sbjct: 1 KKSIPVRGAAIFNENLSKILLVQGTE---SDSWSFPRGKISKDENDIDCCIREVKEEIGF 57
Query: 122 E 122
+
Sbjct: 58 D 58
>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase;
1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A*
3ffu_A*
Length = 153
Score = 60.7 bits (148), Expect = 6e-13
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 59 PRLKKTVTYIVMAVIINSKNAVLMMQ-EAKSICNGAWYLPAGKVEEGETLEEAVKREVLE 117
+++K V+A + +L+ Q + G W P GK+E GET EEA+ RE+ E
Sbjct: 14 SKIRKGHWIPVVAGFLRKDGKILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNE 73
Query: 118 ETGLEMAPTTLLAV 131
E G+E L
Sbjct: 74 ELGIEAEVGELKLA 87
>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}
Length = 140
Score = 59.9 bits (146), Expect = 1e-12
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 69 VMAVIINSKNAVLMMQ-EAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTT 127
V+A II +L+ Q A+S G W GKVE E+ +A+ RE+ EE G+E
Sbjct: 11 VVAAIIERDGKILLAQRPAQSDQAGLWEFAGGKVEPDESQRQALVRELREELGIEATVGE 70
Query: 128 LLAVET 133
+A
Sbjct: 71 YVASHQ 76
>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for
structural GENO JCSG, protein structure initiative,
PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}
Length = 149
Score = 59.6 bits (144), Expect = 2e-12
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 68 IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTT 127
++ + + ++ W AG E+ E + E KRE +EE L++
Sbjct: 10 VIPFIKTEANYQFGVLHRTD---ADVWQFVAGGGEDEEAISETAKRESIEELNLDVDVKM 66
Query: 128 LLA 130
Sbjct: 67 YSL 69
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual
domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis
SP}
Length = 341
Score = 61.9 bits (150), Expect = 2e-12
Identities = 20/111 (18%), Positives = 37/111 (33%)
Query: 20 LENIFSGKVCHDGEDQCDYDLTEQADFAPARGVIPESFVPRLKKTVTYIVMAVIINSKNA 79
+ + + + + T+I ++
Sbjct: 156 YLDKVPPAIADYLQTFQKSERYIALCDEYQFLQAYKQAWATAPYAPTFITTDAVVVQAGH 215
Query: 80 VLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLA 130
VLM++ G LP G +++ ETL E + RE+ EET L++ L
Sbjct: 216 VLMVRRQAKPGLGLIALPGGFIKQNETLVEGMLRELKEETRLKVPLPVLRG 266
>1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A
hydrolase, alpha-beta; NMR {Homo sapiens} SCOP:
d.113.1.1 PDB: 1xsb_A 1xsc_A*
Length = 153
Score = 58.2 bits (141), Expect = 6e-12
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 69 VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128
++ + N+ L++Q + W P G VE GE E R EE G+E T+
Sbjct: 20 LIPKVDNNAIEFLLLQASDG--IHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQLTI 77
Query: 129 LA 130
+
Sbjct: 78 IE 79
>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A
{Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7
PDB: 2qkm_B*
Length = 271
Score = 59.7 bits (144), Expect = 7e-12
Identities = 14/56 (25%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 71 AVIINSK-NAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAP 125
A++++ ++++ K+ + W P GK+++ E+ + REV EETG + +
Sbjct: 106 AIMLDMSMQQCVLVKGWKA--SSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSS 159
>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein
structure initiative, midwest center structural
genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP:
a.4.5.68 d.113.1.6
Length = 273
Score = 59.7 bits (144), Expect = 9e-12
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 80 VLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAVET 133
VL++Q +W LP G V E+ E++V RE EETG+ ++ + + +
Sbjct: 58 VLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKEETGVVISQENIEQLHS 111
>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2,
protein structure INI NEW YORK SGX research center for
structural genomics; 2.20A {Listeria innocua}
Length = 187
Score = 58.3 bits (141), Expect = 1e-11
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 91 NGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLAV 131
G W +P G V+E E+ E+A +RE+ EET L P V
Sbjct: 66 GGKWAVPGGFVDENESAEQAAERELEEETSLTDIPLIPFGV 106
>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II),
NYSGXRC, structural genomics; 2.02A {Clostridium
perfringens atcc 13124}
Length = 159
Score = 57.7 bits (139), Expect = 1e-11
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
Query: 68 IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTT 127
++V I K+ VL+ K G +E E EEA RE EE GL +
Sbjct: 7 FTVSVFIVCKDKVLLHLHKK---AKKMLPLGGHIEVNELPEEACIREAKEEAGLNVTLYN 63
Query: 128 LLAVET 133
+ +
Sbjct: 64 PIDINL 69
>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2,
protein structure INI NEW YORK SGX research center for
structural genomics; 2.00A {Bacteroides fragilis}
Length = 140
Score = 56.1 bits (136), Expect = 3e-11
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 69 VMAVIINSKNAVLMMQ---EAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAP 125
V+A +I L +Q S + + P GKVEEGE+L+EA++RE++EE +
Sbjct: 8 VVAAVIRLGEKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYVIEV 67
Query: 126 TTLLAV 131
L
Sbjct: 68 GEKLLT 73
>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium
cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP:
d.113.1.1 PDB: 1kt9_A*
Length = 138
Score = 54.1 bits (131), Expect = 2e-10
Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 71 AVIINSKNA---VLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLE 122
VI L++Q + W P G V+ GE +A RE EE +
Sbjct: 8 LVIYRKLAGKIEFLLLQASYP--PHHWTPPKGHVDPGEDEWQAAIRETKEEANIT 60
>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc;
NMR {Escherichia coli} PDB: 2kdw_A
Length = 164
Score = 54.5 bits (132), Expect = 2e-10
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 69 VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128
V VI N + V+ A+ +W P G + GE+ E+A+ RE+ EE GL +
Sbjct: 11 VGIVICNRQGQVMW---ARRFGQHSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRI 67
Query: 129 LA 130
LA
Sbjct: 68 LA 69
>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II),
NYSGXRC, 11181H, structural genomics; 2.15A
{Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Length = 364
Score = 53.3 bits (127), Expect = 2e-09
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 92 GAWYLPAGKVEEGETLEEAVKREVLEETGLE 122
W P GK+E+ ET A RE+ EETG
Sbjct: 49 DDWSWPKGKLEQNETHRHAAVREIGEETGSP 79
>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP
pyrophosphohydrolase MUTT dihydroneo triphosphate
pyrophosphohydrolase folate biosynthesis; 1.80A
{Escherichia coli} PDB: 2o5w_A
Length = 150
Score = 51.4 bits (123), Expect = 2e-09
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 67 YIVMAVII-NSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAP 125
++ VI VLM+Q W G VEEGET +A REV EE +++
Sbjct: 10 VSILVVIYAQDTKRVLMLQRRDD--PDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVA 67
Query: 126 TTLLAVET 133
L ++
Sbjct: 68 EQLTLIDC 75
>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed
4-stranded beta sheet, 2-stranded antiparallel sheet;
NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*
Length = 165
Score = 51.4 bits (124), Expect = 3e-09
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 69 VMAVIINSKNAVLMMQEAKSICN-GAWYLPAGKVEEGETLEEAVKREVLEETGLE 122
V ++N+ + A + AW +P G ++EGE A RE+ EETG+
Sbjct: 17 VGICLMNNDKKIFA---ASRLDIPDAWQMPQGGIDEGEDPRNAAIRELREETGVT 68
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS
protein structure initiative, joint center for
structural G hydrolase; HET: MSE; 2.20A {Escherichia
coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Length = 269
Score = 50.5 bits (121), Expect = 1e-08
Identities = 17/25 (68%), Positives = 22/25 (88%)
Query: 98 AGKVEEGETLEEAVKREVLEETGLE 122
AG VE GETLE+AV REV+EE+G++
Sbjct: 170 AGFVEVGETLEQAVAREVMEESGIK 194
>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol
polyphosphate metabolism, structural genomics,
structural genomics consortium; HET: IHP; 1.25A {Homo
sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*
Length = 194
Score = 49.3 bits (117), Expect = 2e-08
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 69 VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128
+ S+ VL++ ++ W +P G +E E A REV EE G++ L
Sbjct: 45 CLCFRSESEEEVLLVSSSRH--PDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRL 102
Query: 129 LAV 131
+ +
Sbjct: 103 VGI 105
>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A
{Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*
Length = 198
Score = 48.8 bits (117), Expect = 4e-08
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 69 VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLE 122
VM V I + +L+ + A + G ++ GE++ EA RE+ EE G
Sbjct: 52 VMIVPIVDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFG 105
>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II),
NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium
perfringens atcc 13124}
Length = 197
Score = 48.5 bits (115), Expect = 5e-08
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 71 AVIINSKNA-VLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLE 122
A +N + LM+ +W G + + + +E+ EETG++
Sbjct: 50 AFAVNKERNKFLMIHHNI---YNSWAWTGGHSDNEKDQLKVAIKELKEETGVK 99
>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase;
2.00A {Deinococcus radiodurans}
Length = 145
Score = 46.4 bits (111), Expect = 2e-07
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 96 LPAGKVEEGETLEEAVKREVLEETGLE 122
+ AG VE+GE L A RE+LEE G
Sbjct: 36 IVAGGVEKGEDLGAAAARELLEEVGGA 62
>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD,
hydrol structural genomics, NPPSFA; HET: RBY; 1.66A
{Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*
Length = 182
Score = 46.4 bits (111), Expect = 2e-07
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 96 LPAGKVEEGETLEEAVKREVLEETGLE 122
+PAGKV+EGET E A +RE+ EE G E
Sbjct: 72 VPAGKVDEGETPEAAARRELREEVGAE 98
>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein
STRU initiative, midwest center for structural genomics,
MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP:
a.4.5.68 d.113.1.6
Length = 226
Score = 46.2 bits (109), Expect = 4e-07
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 59 PRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEE 118
P + I+ + ++L+++ G W L G V++ E++++A KR + E
Sbjct: 10 PTFYLGIDCIIFGFN-EGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAEL 68
Query: 119 TGLEMAPTTLLAV 131
TGLE +
Sbjct: 69 TGLENVYMEQVGA 81
>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT
family, riken structural genomics/proteomics initiative,
RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP:
d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A
1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A
Length = 170
Score = 45.3 bits (108), Expect = 5e-07
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 94 WYLPAGKVEEGETLEEAVKREVLEETGLE 122
+PAG +E GE EA +RE+ E+TGL
Sbjct: 62 LEIPAGLIEPGEDPLEAARRELAEQTGLS 90
>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase;
HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB:
1qvj_A*
Length = 292
Score = 45.6 bits (107), Expect = 9e-07
Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 58 VPRLKKTVTYIVMAVIINSKNA--VLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREV 115
+ R K+ + + ++ K+ + ++ G W +P G V+ GE + +KRE
Sbjct: 117 ITRWKRDSSGNKIMHPVSGKHILQFVAIKRKD---CGEWAIPGGMVDPGEKISATLKREF 173
Query: 116 LEETGLEMAPTTLLAVET 133
EE + T+ E
Sbjct: 174 GEEALNSLQKTSAEKREI 191
>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose
pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo
sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A*
3l85_A*
Length = 212
Score = 45.2 bits (107), Expect = 1e-06
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 96 LPAGKVEEGETLEEAVKREVLEETGLE 122
PAG +++GET E A RE+ EETG +
Sbjct: 96 FPAGLIDDGETPEAAALRELEEETGYK 122
>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR
{Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A
Length = 171
Score = 44.7 bits (106), Expect = 1e-06
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 68 IVMAVIINSKNAVLMMQ--EAKSICNGAWYLPA-GKVEEGETLEEAVKREVLEETGLEMA 124
+V A + NS+ + + + +KS+ A + G V+ GET EEA +RE EE +E+
Sbjct: 36 VVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEID 95
Query: 125 PTTLLAVET 133
+ + +
Sbjct: 96 ALSWRPLAS 104
>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural
genomics, escherichia coli putative nudix hydrolase,
PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP:
d.113.1.2
Length = 180
Score = 44.3 bits (105), Expect = 1e-06
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Query: 68 IVMAVIINSKNAVLMMQ--EAKSICNGAWYLPA-GKVEEGETLEEAVKREVLEETGLEMA 124
V+ + +L+ + E K G A G V+ E L E+ +RE EE G+
Sbjct: 39 ATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGV 98
Query: 125 PTTLL 129
P
Sbjct: 99 PFAEH 103
>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold,
hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB:
2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*
Length = 212
Score = 44.4 bits (104), Expect = 2e-06
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 73 IINSKNAVLMMQEAKSICNGAWYLPAGKVEEGE-TLEEAVKREVLEETGLEMAPTTLLAV 131
+ + +LMM +G P G V+ + +LEE +KRE+ EE G +A +
Sbjct: 51 RVPIRRVLLMMMRF----DGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVEVTED 106
Query: 132 ETA 134
+
Sbjct: 107 DYR 109
>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH
domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A*
3gz8_A*
Length = 240
Score = 43.9 bits (103), Expect = 3e-06
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 64 TVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEE--GETLEEAVKREVLEETGL 121
TV ++ + + VL++Q + G W LP G ++E E+LE+ V R++ E+T +
Sbjct: 24 TVDAVLFTYH-DQQLKVLLVQRSNHPFLGLWGLPGGFIDETCDESLEQTVLRKLAEKTAV 82
Query: 122 EMAPTTLLAVETAR 135
L
Sbjct: 83 VPPYIEQLCTVGNN 96
>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix
fold, hydrolase; 1.90A {Escherichia coli} SCOP:
d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A
Length = 209
Score = 43.1 bits (102), Expect = 4e-06
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 96 LPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLA 130
+ AG +EEGE++E+ +RE +EE GL + T +
Sbjct: 94 MVAGMIEEGESVEDVARREAIEEAGLIVKRTKPVL 128
>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA
turnover, structural genomic consortium, SGC; HET: IMP;
1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A
Length = 217
Score = 42.5 bits (99), Expect = 8e-06
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 91 NGAWYLPAGKVEEGE-TLEEAVKREVLEETGLEMAPTTLLAVE 132
+G P G V+ + +LE+ + RE+ EE G A + +
Sbjct: 74 DGRLGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVERTD 116
>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI
ribose, RV1700, hydrolase; HET: APR; 2.00A
{Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A
1mqe_A* 1mqw_A* 1mr2_A*
Length = 207
Score = 41.5 bits (98), Expect = 2e-05
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 94 WYLPAGKVE-EGETLEEAVKREVLEETGLE 122
W LPAG ++ GE RE+ EE GL+
Sbjct: 72 WELPAGLLDVAGEPPHLTAARELREEVGLQ 101
>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A
{Escherichia coli} PDB: 3o52_A* 1viu_A 3o69_A 3o61_A
Length = 191
Score = 39.9 bits (94), Expect = 5e-05
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 96 LPAGKVEEGETLEEAVKREVLEETGLE 122
AG ++ E E +++E +EETG E
Sbjct: 83 SCAGLLDNDEP-EVCIRKEAIEETGYE 108
>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl,
isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2
PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A*
1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A
2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
Length = 190
Score = 39.0 bits (91), Expect = 1e-04
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Query: 51 GVIPESFVPRLKKTVTYIVMAVIINSKNAVLMMQEA--KSICNGAWYLP-AGKVEEGETL 107
G + + + + + N+K +L+ + A K G W G + GE+
Sbjct: 17 GTLEKYAAHTADTRLHLAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESN 76
Query: 108 EEAVKREVLEETGLEMAPTTLL 129
E+AV R E G+E+ P +
Sbjct: 77 EDAVIRRCRYELGVEITPPESI 98
>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics,
structural genomics consortium, SGC, NU MUTT-like,
hydrolase, magnesium binding; 2.70A {Homo sapiens}
Length = 218
Score = 38.4 bits (89), Expect = 2e-04
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 96 LPAGKVEE-GETLEEAVKREVLEETGLEMAPTTL 128
L AG V++ G +LEE +E EE G +AP+ L
Sbjct: 99 LCAGLVDQPGLSLEEVACKEAWEECGYHLAPSDL 132
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.001
Identities = 31/159 (19%), Positives = 49/159 (30%), Gaps = 61/159 (38%)
Query: 8 IMANHEAIITPVLEN--------IFSGKVCHD-GEDQCDYD-LTEQAD---FAPA----- 49
+ +A L++ F+G H GE Y L AD
Sbjct: 1736 LTLMEKAAFE-DLKSKGLIPADATFAG---HSLGE----YAALASLADVMSIESLVEVVF 1787
Query: 50 -RGVIPESFVPRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLE 108
RG+ + VPR + + M A+ + A S E L+
Sbjct: 1788 YRGMTMQVAVPRDELGRSNYGMI-------AINPGRVAASFSQ-------------EALQ 1827
Query: 109 EAVKREVLEETG--LEMA----PT-------TLLAVETA 134
V+R V + TG +E+ L A++T
Sbjct: 1828 YVVER-VGKRTGWLVEIVNYNVENQQYVAAGDLRALDTV 1865
>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans,
hydrolase; 1.70A {Deinococcus radiodurans} SCOP:
d.113.1.1 PDB: 1nqy_A
Length = 194
Score = 35.4 bits (82), Expect = 0.002
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 96 LPAGKVEEGETLEEAVKREVLEETGLE 122
P G ++ GET +A RE EE L+
Sbjct: 68 FPGGSLDAGETPTQAALREAQEEVALD 94
>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3
family, structural protein structure initiative, PSI;
HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}
Length = 300
Score = 31.9 bits (72), Expect = 0.048
Identities = 18/89 (20%), Positives = 28/89 (31%), Gaps = 7/89 (7%)
Query: 47 APARGVIPESFVPRLKKTVTYIVMAVIINSKNAVLMM-----QEAKSICNGAW-YLPAGK 100
P ++ + VP Y V A L + KS+ G + AG
Sbjct: 100 EPTLMLLDRAVVPTFG-VRAYGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGG 158
Query: 101 VEEGETLEEAVKREVLEETGLEMAPTTLL 129
+L + + +E EE L A
Sbjct: 159 QPADLSLRQNLIKECAEEADLPEALARQA 187
>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation,
RNA structural genomics consortium, SGC, RNA
degradation, RNA B protein; 1.70A {Homo sapiens}
Length = 214
Score = 31.3 bits (70), Expect = 0.059
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 96 LPAGKVEEG-ETLEEAVKREVLEETGL 121
P G V+ +LE+ + R + G
Sbjct: 58 FPGGFVDRRFWSLEDGLNRVLGLGLGC 84
>3e57_A Uncharacterized protein TM1382; structural genomics, nudix
hydrolase, PSI-2, protein structure initiative; 1.89A
{Thermotoga maritima}
Length = 211
Score = 27.4 bits (60), Expect = 1.2
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 15/75 (20%)
Query: 59 PRLKKTVTYIVMAVIINSKNAVLMMQEAKS-----ICNGAWYLPAGKVEE------GETL 107
K+ + Y V+I + VL+ + + N G V E E
Sbjct: 64 ETTKQVIPY----VVIMDGDRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGATPREAF 119
Query: 108 EEAVKREVLEETGLE 122
+ ++REV EE +
Sbjct: 120 LKGLEREVNEEVDVS 134
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A*
3ada_A*
Length = 965
Score = 25.3 bits (55), Expect = 9.2
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 82 MMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVL 116
+ A+ G W P + GET+++AV RE
Sbjct: 584 LSHGAEFEDVGQWKRPWYYPQAGETMDQAVYRESK 618
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.376
Gapped
Lambda K H
0.267 0.0691 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,089,515
Number of extensions: 117838
Number of successful extensions: 361
Number of sequences better than 10.0: 1
Number of HSP's gapped: 346
Number of HSP's successfully gapped: 75
Length of query: 135
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 51
Effective length of database: 4,356,429
Effective search space: 222177879
Effective search space used: 222177879
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (23.9 bits)