RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10892
(135 letters)
>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase
Hmth1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 156
Score = 66.2 bits (161), Expect = 2e-15
Identities = 19/67 (28%), Positives = 34/67 (50%)
Query: 65 VTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMA 124
+ + V++ VL+ + + G W GKV+EGET+E+ +RE+ EE+GL +
Sbjct: 3 ASRLYTLVLVLQPQRVLLGMKKRGFGAGRWNGFGGKVQEGETIEDGARRELQEESGLTVD 62
Query: 125 PTTLLAV 131
+
Sbjct: 63 ALHKVGQ 69
>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184
{Nitrosomonas europaea [TaxId: 915]}
Length = 146
Score = 63.7 bits (154), Expect = 2e-14
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 68 IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTT 127
+ +A +I + L+++E PAG +E GE++ +A REVLEETG P
Sbjct: 4 VTVAAVIEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEV 63
Query: 128 LLAV 131
L +
Sbjct: 64 LTGI 67
>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus
radiodurans [TaxId: 1299]}
Length = 158
Score = 59.4 bits (143), Expect = 8e-13
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 69 VMAVIINSKNAVLMMQEA----KSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMA 124
V++N + +L++QE G W++P+G VE+GE ++A RE EETGL +
Sbjct: 15 AGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREACEETGLRVR 74
Query: 125 PTTLLAV 131
P L
Sbjct: 75 PVKFLGA 81
>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD
{Escherichia coli [TaxId: 562]}
Length = 160
Score = 58.3 bits (140), Expect = 2e-12
Identities = 21/80 (26%), Positives = 37/80 (46%)
Query: 54 PESFVPRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKR 113
E F ++ T + ++ NS+ L+ + G W++P G+V++ ETLE A +R
Sbjct: 6 QEDFATVVRSTPLVSLDFIVENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFER 65
Query: 114 EVLEETGLEMAPTTLLAVET 133
+ E GL + T
Sbjct: 66 LTMAELGLRLPITAGQFYGV 85
>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141
{Enterococcus faecalis [TaxId: 1351]}
Length = 147
Score = 56.8 bits (136), Expect = 8e-12
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Query: 62 KKTVTYI----VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLE 117
++T+TY ++ +N +++ +A NGA++LP G++E ET EEA+ REVLE
Sbjct: 9 EETLTYQTRYAAYIIVSKPENNTMVLVQAP---NGAYFLPGGEIEGTETKEEAIHREVLE 65
Query: 118 ETGLEMAPTTLLAV 131
E G+ + L
Sbjct: 66 ELGISVEIGCYLGE 79
>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 152
Score = 55.7 bits (133), Expect = 2e-11
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 68 IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTT 127
IV + ++ VL+++ + G + P G VE ET EAVKRE EETG+ + P
Sbjct: 2 IVTSGVLVENGKVLLVKHKR---LGVYIYPGGHVEHNETPIEAVKREFEEETGIVVEPIG 58
Query: 128 LLAV 131
Sbjct: 59 FTYG 62
>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus
thermophilus [TaxId: 274]}
Length = 126
Score = 55.0 bits (132), Expect = 2e-11
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 71 AVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLL 129
V+ N+K VL++++ G W P G E GE+LEEA REV EETG+ L
Sbjct: 7 GVVFNAKREVLLLRDR----MGFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPL 61
>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African
clawed frog (Xenopus laevis) [TaxId: 8355]}
Length = 196
Score = 55.8 bits (134), Expect = 3e-11
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 69 VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGET-LEEAVKREVLEETGLEMAPTT 127
+ + + +LMM +G P G V+ + LEE +KRE+ EE G +A
Sbjct: 34 KLFDRVPIRRVLLMMMRF----DGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVE 89
Query: 128 LLAVET 133
+ +
Sbjct: 90 VTEDDY 95
>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic
domain {Schizosaccharomyces pombe [TaxId: 4896]}
Length = 151
Score = 55.2 bits (132), Expect = 3e-11
Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 71 AVIINSK-NAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLL 129
A++++ ++++ K+ + W P GK+++ E+ + REV EETG + +
Sbjct: 7 AIMLDMSMQQCVLVKGWKA--SSGWGFPKGKIDKDESDVDCAIREVYEETGFDCSSRINP 64
>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose
pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 292
Score = 53.1 bits (127), Expect = 7e-10
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 58 VPRLKKTVTYIVMAVIINSKNA--VLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREV 115
+ R K+ + + ++ K+ + ++ G W +P G V+ GE + +KRE
Sbjct: 117 ITRWKRDSSGNKIMHPVSGKHILQFVAIKRKD---CGEWAIPGGMVDPGEKISATLKREF 173
Query: 116 LEETGLEMAPTTLLAVE 132
EE + T+ E
Sbjct: 174 GEEALNSLQKTSAEKRE 190
>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A
hydrolase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 153
Score = 49.8 bits (118), Expect = 3e-09
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 67 YIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPT 126
++ + N+ L++Q + W P G VE GE E R EE G+E
Sbjct: 18 RCLIPKVDNNAIEFLLLQASDG--IHHWTPPKGHVEPGEDDLETALRATQEEAGIEAGQL 75
Query: 127 TLL 129
T++
Sbjct: 76 TII 78
>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115)
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 155
Score = 48.6 bits (115), Expect = 1e-08
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Query: 60 RLKKTVTYIVMAVIINSKNAVLMMQEAKSICN-GAWYLPAGKVEEGETLEEAVKREVLEE 118
R + T+ + + V+M A + P G VE E E+V RE+ EE
Sbjct: 3 RSQLTILTNICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEE 62
Query: 119 TGLEMAPTTLLAVET 133
TGL + L+ ++
Sbjct: 63 TGLTIQNPQLVGIKN 77
>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal
domain {Enterococcus faecalis [TaxId: 1351]}
Length = 202
Score = 49.1 bits (116), Expect = 1e-08
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 59 PRLKKTVTYIVMAVII-NSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLE 117
+ TV +++ + VL++Q +W LP G V E+ E++V RE E
Sbjct: 34 EKPSLTVDMVLLCYNKEADQLKVLLIQRKGHPFRNSWALPGGFVNRNESTEDSVLRETKE 93
Query: 118 ETGLEMAP 125
ETG+ ++
Sbjct: 94 ETGVVISQ 101
>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia
coli [TaxId: 562]}
Length = 131
Score = 47.8 bits (113), Expect = 2e-08
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 69 VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTL 128
+ V I +++L+ Q + NG + AG VE GETLE+AV REV+EE+G+++
Sbjct: 5 CIIVAIRRDDSILLAQHTRH-RNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRY 63
Query: 129 LAV 131
+
Sbjct: 64 VTS 66
>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate
phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 47.4 bits (112), Expect = 2e-08
Identities = 15/61 (24%), Positives = 27/61 (44%)
Query: 71 AVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTTLLA 130
+ S++ ++ + S W +P G +E E A REV EE G++ L+
Sbjct: 16 CLCFRSESEEEVLLVSSSRHPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKGTLGRLVG 75
Query: 131 V 131
+
Sbjct: 76 I 76
>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A
hydrolase) {Narrow-leaved blue lupine (Lupinus
angustifolius) [TaxId: 3871]}
Length = 165
Score = 45.2 bits (106), Expect = 2e-07
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 69 VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEM 123
V ++N+ + AW +P G ++EGE A RE+ EETG+
Sbjct: 17 VGICLMNNDKKIFAASRLDI--PDAWQMPQGGIDEGEDPRNAAIRELREETGVTS 69
>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal
domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 147
Score = 44.0 bits (103), Expect = 4e-07
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 59 PRLKKTVTYIVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEE 118
P + I+ + ++L+++ G W L G V++ E++++A KR + E
Sbjct: 7 PTFYLGIDCIIFG-FNEGEISLLLLKRNFEPAMGEWSLMGGFVQKDESVDDAAKRVLAEL 65
Query: 119 TGLEMAPTTLLAV 131
TGLE +
Sbjct: 66 TGLENVYMEQVGA 78
>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase
{Escherichia coli [TaxId: 562]}
Length = 153
Score = 40.2 bits (93), Expect = 1e-05
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Query: 71 AVIINSKNAVLMMQEAKSI---CNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAP 125
+ + N+K +L+ + A S G + GE+ E+AV R E G+E+ P
Sbjct: 7 SWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITP 64
>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus
thermophilus [TaxId: 274]}
Length = 158
Score = 38.2 bits (88), Expect = 6e-05
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 69 VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLE 122
V + + + + Q ++ +PAG +E GE EA +RE+ E+TGL
Sbjct: 27 VAVIALREGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGLS 80
>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase
(MutT) {Escherichia coli [TaxId: 562]}
Length = 129
Score = 37.6 bits (86), Expect = 8e-05
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 68 IVMAVIINSKNAVLMMQEAK-SICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEM 123
I + +I N N + + + A + P GK+E GET E+AV RE+ EE G+
Sbjct: 6 IAVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGITP 62
>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia
coli [TaxId: 562]}
Length = 186
Score = 37.0 bits (85), Expect = 2e-04
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 69 VMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEET 119
VM V I + +L+ + A + G ++ GE++ EA RE+ EE
Sbjct: 51 VMIVPIVDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEV 101
>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus
radiodurans [TaxId: 1299]}
Length = 187
Score = 34.8 bits (79), Expect = 0.001
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 69 VMAVIINSKNA-VLMMQEAKSICN--GAWYLPAGKVEEGETLEEAVKREVLEET 119
V+ + + VL+ + + G P G ++ GET +A RE EE
Sbjct: 35 VLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEV 88
>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal
domain {Bacillus stearothermophilus [TaxId: 1422]}
Length = 127
Score = 32.8 bits (74), Expect = 0.005
Identities = 11/61 (18%), Positives = 28/61 (45%)
Query: 68 IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAPTT 127
+ +AV+ + + VL+ + + + +G +E +++ V E+ GL++ T
Sbjct: 6 LAVAVLADDEGRVLIRKRDSTGLLANLWEFPSCETDGADGKEKLEQMVGEQYGLQVELTE 65
Query: 128 L 128
Sbjct: 66 P 66
>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079
{Deinococcus radiodurans str. R1 (Deinococcus
radiodurans R1) [TaxId: 243230]}
Length = 162
Score = 32.5 bits (73), Expect = 0.008
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 69 VMAVIINSKNAVLMMQ---EAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLEMAP 125
V A + NS+ + + + N G V+ GET EEA +RE EE +E+
Sbjct: 31 VNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEIDA 90
Query: 126 TTLL 129
+
Sbjct: 91 LSWR 94
>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A
hydrolase) {Caenorhabditis elegans [TaxId: 6239]}
Length = 137
Score = 31.4 bits (70), Expect = 0.016
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 68 IVMAVIINSKNAVLMMQEAKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGLE 122
+V+ + K L++Q + W P G V+ GE +A RE EE +
Sbjct: 7 LVIYRKLAGKIEFLLLQASYP--PHHWTPPKGHVDPGEDEWQAAIRETKEEANIT 59
>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia
coli [TaxId: 562]}
Length = 161
Score = 30.1 bits (67), Expect = 0.047
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 69 VMAVIINSKNAVLMMQEAKSICNGAWY---LPAGKVEEGETLEEAVKREVLEETGLEMAP 125
V+ + +L+ + ++ G V+ E L E+ +RE EE G+ P
Sbjct: 33 TYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVP 92
Query: 126 TTLL 129
Sbjct: 93 FAEH 96
>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH
{Escherichia coli [TaxId: 562]}
Length = 189
Score = 30.0 bits (67), Expect = 0.057
Identities = 9/59 (15%), Positives = 23/59 (38%), Gaps = 7/59 (11%)
Query: 69 VMAVIINSKNAVLMMQE-------AKSICNGAWYLPAGKVEEGETLEEAVKREVLEETG 120
++ N+K +++ +G + + + E +++E +EETG
Sbjct: 46 ATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLDNDEPEVCIRKEAIEETG 104
>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli
[TaxId: 562]}
Length = 209
Score = 29.7 bits (66), Expect = 0.073
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 68 IVMAVIINSKNAVLMMQE------AKSICNGAWYLPAGKVEEGETLEEAVKREVLEETGL 121
V+ ++ V+++++ S + AG +EEGE++E+ +RE +EE GL
Sbjct: 60 AVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGL 119
Query: 122 EM 123
+
Sbjct: 120 IV 121
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.376
Gapped
Lambda K H
0.267 0.0519 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 492,285
Number of extensions: 21067
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 29
Length of query: 135
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 59
Effective length of database: 1,364,116
Effective search space: 80482844
Effective search space used: 80482844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (22.8 bits)