BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10894
(364 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P02|A Chain A, Crystal Structure Of The Alpha Subunit Of Human S-
Adenosylmethionine Synthetase 2
Length = 396
Score = 525 bits (1351), Expect = e-149, Method: Compositional matrix adjust.
Identities = 246/361 (68%), Positives = 291/361 (80%)
Query: 1 MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGY 60
+CDQISDA+LDAHL+QDPDAKVACETV KTGM+LL GEITS+A VDYQKV RE +KHIGY
Sbjct: 34 ICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAAVDYQKVVREAVKHIGY 93
Query: 61 DDSSKGFDYKTCSVMLCLDEQSPDIAAGVHINRDRDDVGAGDQGLMFGYATDETEECMPL 120
DDSSKGFDYKTC+V++ L++QSPDIA GVH++R+ +D+GAGDQGLMFGYATDETEECMPL
Sbjct: 94 DDSSKGFDYKTCNVLVALEQQSPDIAQGVHLDRNEEDIGAGDQGLMFGYATDETEECMPL 153
Query: 121 TVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEYCFARGACXXXXXXXXXXXXXXXEK 180
T+VLAHKLN K+A+LRR+G W RPD+KTQVT +Y RGA E+
Sbjct: 154 TIVLAHKLNAKLAELRRNGTLPWLRPDSKTQVTVQYMQDRGAVLPIRVHTIVISVQHDEE 213
Query: 181 IGLKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIVDTYX 240
+ L E+R + KVIKAV+PA YLDE+TI H+ P G F++GGPQ DAGLTGRKIIVDTY
Sbjct: 214 VCLDEMRDALKEKVIKAVVPAKYLDEDTIYHLQPSGRFVIGGPQGDAGLTGRKIIVDTYG 273
Query: 241 XXXXXXXXXXXXKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISITL 300
KD+TKVDRSAAYAARWVAKSLVK GLCRR LVQVSYAIGV+ P+SI++
Sbjct: 274 GWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLCRRVLVQVSYAIGVSHPLSISI 333
Query: 301 FDYGTSSRSHKELLSIVQRNFDLRPGKIVKDLNLRNPIYQQTSTYGHFGRDIFPWEVPKP 360
F YGTS +S +ELL IV++NFDLRPG IV+DL+L+ PIYQ+T+ YGHFGRD FPWEVPK
Sbjct: 334 FHYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKKPIYQRTAAYGHFGRDSFPWEVPKK 393
Query: 361 L 361
L
Sbjct: 394 L 394
>pdb|1QM4|A Chain A, Methionine Adenosyltransferase Complexed With A
L-Methionine Analogous
pdb|1QM4|B Chain B, Methionine Adenosyltransferase Complexed With A
L-Methionine Analogous
pdb|1O90|A Chain A, Methionine Adenosyltransferase Complexed With A
L-Methionine Analogous
pdb|1O90|B Chain B, Methionine Adenosyltransferase Complexed With A
L-Methionine Analogous
pdb|1O92|A Chain A, Methionine Adenosyltransferase Complexed With Adp And A
L-Methionine Analogous
pdb|1O92|B Chain B, Methionine Adenosyltransferase Complexed With Adp And A
L-Methionine Analogous
pdb|1O93|A Chain A, Methionine Adenosyltransferase Complexed With Atp And A
L-Methionine Analogous
pdb|1O93|B Chain B, Methionine Adenosyltransferase Complexed With Atp And A
L-Methionine Analogous
pdb|1O9T|B Chain B, Methionine Adenosyltransferase Complexed With Both
Substrates Atp And Methionine
pdb|1O9T|A Chain A, Methionine Adenosyltransferase Complexed With Both
Substrates Atp And Methionine
Length = 396
Score = 514 bits (1324), Expect = e-146, Method: Compositional matrix adjust.
Identities = 243/363 (66%), Positives = 291/363 (80%)
Query: 1 MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGY 60
+CDQISDA+LDAHL+QDP+AKVACETV KTGMVLLCGEITS A++DYQ+V R+TIKHIGY
Sbjct: 34 ICDQISDAVLDAHLKQDPNAKVACETVCKTGMVLLCGEITSMAMIDYQRVVRDTIKHIGY 93
Query: 61 DDSSKGFDYKTCSVMLCLDEQSPDIAAGVHINRDRDDVGAGDQGLMFGYATDETEECMPL 120
DDS+KGFD+KTC+V++ L++QSPDIA VH++R+ +DVGAGDQGLMFGYATDETEECMPL
Sbjct: 94 DDSAKGFDFKTCNVLVALEQQSPDIAQCVHLDRNEEDVGAGDQGLMFGYATDETEECMPL 153
Query: 121 TVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEYCFARGACXXXXXXXXXXXXXXXEK 180
T+VLAHKLN ++ADLRRSG W RPD+KTQVT +Y GA E
Sbjct: 154 TIVLAHKLNTRMADLRRSGVLPWLRPDSKTQVTVQYVQDNGAVIPVRVHTIVISVQHNED 213
Query: 181 IGLKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIVDTYX 240
I L+ +R + +VIKAV+PA YLDE+TI H+ P G F++GGPQ DAG+TGRKIIVDTY
Sbjct: 214 ITLEAMREALKEQVIKAVVPAKYLDEDTIYHLQPSGRFVIGGPQGDAGVTGRKIIVDTYG 273
Query: 241 XXXXXXXXXXXXKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISITL 300
KD+TKVDRSAAYAARWVAKSLVKAGLCRR LVQVSYAIGVAEP+SI++
Sbjct: 274 GWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKAGLCRRVLVQVSYAIGVAEPLSISI 333
Query: 301 FDYGTSSRSHKELLSIVQRNFDLRPGKIVKDLNLRNPIYQQTSTYGHFGRDIFPWEVPKP 360
F YGTS ++ +ELL +V +NFDLRPG IV+DL+L+ PIYQ+T+ YGHFGR FPWEVPK
Sbjct: 334 FTYGTSKKTERELLEVVNKNFDLRPGVIVRDLDLKKPIYQKTACYGHFGRSEFPWEVPKK 393
Query: 361 LVI 363
LV
Sbjct: 394 LVF 396
>pdb|2OBV|A Chain A, Crystal Structure Of The Human S-adenosylmethionine
Synthetase 1 In Complex With The Product
Length = 384
Score = 514 bits (1323), Expect = e-146, Method: Compositional matrix adjust.
Identities = 241/363 (66%), Positives = 292/363 (80%)
Query: 1 MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGY 60
+CDQISDA+LDAHL+QDP+AKVACETV KTGMVLLCGEITS A+VDYQ+V R+TIKHIGY
Sbjct: 22 ICDQISDAVLDAHLKQDPNAKVACETVCKTGMVLLCGEITSMAMVDYQRVVRDTIKHIGY 81
Query: 61 DDSSKGFDYKTCSVMLCLDEQSPDIAAGVHINRDRDDVGAGDQGLMFGYATDETEECMPL 120
DDS+KGFD+KTC+V++ L++QSPDIA VH++R+ +DVGAGDQGLMFGYATDETEECMPL
Sbjct: 82 DDSAKGFDFKTCNVLVALEQQSPDIAQCVHLDRNEEDVGAGDQGLMFGYATDETEECMPL 141
Query: 121 TVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEYCFARGACXXXXXXXXXXXXXXXEK 180
T++LAHKLN ++ADLRRSG W RPD+KTQVT +Y GA E
Sbjct: 142 TIILAHKLNARMADLRRSGLLPWLRPDSKTQVTVQYMQDNGAVIPVRIHTIVISVQHNED 201
Query: 181 IGLKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIVDTYX 240
I L+E+R + +VI+AV+PA YLDE+T+ H+ P G F++GGPQ DAG+TGRKIIVDTY
Sbjct: 202 ITLEEMRRALKEQVIRAVVPAKYLDEDTVYHLQPSGRFVIGGPQGDAGVTGRKIIVDTYG 261
Query: 241 XXXXXXXXXXXXKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISITL 300
KD+TKVDRSAAYAARWVAKSLVKAGLCRR LVQVSYAIGVAEP+SI++
Sbjct: 262 GWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKAGLCRRVLVQVSYAIGVAEPLSISI 321
Query: 301 FDYGTSSRSHKELLSIVQRNFDLRPGKIVKDLNLRNPIYQQTSTYGHFGRDIFPWEVPKP 360
F YGTS ++ +ELL +V +NFDLRPG IV+DL+L+ PIYQ+T+ YGHFGR FPWEVP+
Sbjct: 322 FTYGTSQKTERELLDVVHKNFDLRPGVIVRDLDLKKPIYQKTACYGHFGRSEFPWEVPRK 381
Query: 361 LVI 363
LV
Sbjct: 382 LVF 384
>pdb|3SO4|A Chain A, Methionine-Adenosyltransferase From Entamoeba Histolytica
pdb|3SO4|B Chain B, Methionine-Adenosyltransferase From Entamoeba Histolytica
pdb|3SO4|C Chain C, Methionine-Adenosyltransferase From Entamoeba Histolytica
pdb|3SO4|D Chain D, Methionine-Adenosyltransferase From Entamoeba Histolytica
Length = 415
Score = 384 bits (986), Expect = e-107, Method: Compositional matrix adjust.
Identities = 189/365 (51%), Positives = 246/365 (67%), Gaps = 2/365 (0%)
Query: 1 MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGY 60
MCDQISDAILDA L QDP + VACET TKTG++L+ GEIT+ AV+D K+ R +K IGY
Sbjct: 38 MCDQISDAILDACLAQDPKSHVACETATKTGLILVLGEITTNAVIDIPKIVRGVVKSIGY 97
Query: 61 DDSSKGFDYKTCSVMLCLDEQSPDIAAGVHINRDRDDVGAGDQGLMFGYATDETEECMPL 120
DD++KGFDY+TCSV+ C+++QS DIA GVH+ + +D+GAGDQG+MFGYATDE++E MPL
Sbjct: 98 DDTNKGFDYQTCSVLSCVEQQSQDIAKGVHVEKKEEDIGAGDQGIMFGYATDESKEMMPL 157
Query: 121 TVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEYCFARGACXXXXXXXXXXXXXXXEK 180
T VL+ KL ++ + R G W RPD+K+QVT EY G +
Sbjct: 158 THVLSTKLILRLQECREKGILPWLRPDSKSQVTLEYEEVEGHLKPIRVHTIVISTQHADN 217
Query: 181 IGLKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIVDTYX 240
+ +E+ + +V + VIP + +D+ + + NP G F++GGP DAGLTGRKIIVDTY
Sbjct: 218 VSNEEIAKGLEEEVTQKVIPKELMDDKMLRYYNPSGRFVIGGPMGDAGLTGRKIIVDTYG 277
Query: 241 XXXXXXXXXXXXKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISITL 300
KD +KVDRS AY ARW+AKSLV AGLC R LVQ+SYAIGV+ P+SI +
Sbjct: 278 GWGAHGGGAFSGKDSSKVDRSGAYCARWIAKSLVHAGLCHRVLVQLSYAIGVSHPLSINV 337
Query: 301 FDYGTSSRSHKELLSIVQRNFDLRPGKIVKDLNLRNPIYQQTSTYGHFGRD--IFPWEVP 358
YGT L+ IV +NFD+RPG I+K+L L PI+Q+T+ GHFGR+ F WE P
Sbjct: 338 NTYGTGICDESILVDIVNKNFDMRPGMIIKELGLTRPIFQKTAVGGHFGRNDPDFKWEFP 397
Query: 359 KPLVI 363
K L I
Sbjct: 398 KELEI 402
>pdb|1FUG|A Chain A, S-adenosylmethionine Synthetase
pdb|1FUG|B Chain B, S-adenosylmethionine Synthetase
pdb|1P7L|A Chain A, S-Adenosylmethionine Synthetase Complexed With Amppnp And
Met.
pdb|1P7L|B Chain B, S-Adenosylmethionine Synthetase Complexed With Amppnp And
Met.
pdb|1P7L|C Chain C, S-Adenosylmethionine Synthetase Complexed With Amppnp And
Met.
pdb|1P7L|D Chain D, S-Adenosylmethionine Synthetase Complexed With Amppnp And
Met.
pdb|1RG9|A Chain A, S-adenosylmethionine Synthetase Complexed With Sam And
Ppnp
pdb|1RG9|B Chain B, S-adenosylmethionine Synthetase Complexed With Sam And
Ppnp
pdb|1RG9|C Chain C, S-adenosylmethionine Synthetase Complexed With Sam And
Ppnp
pdb|1RG9|D Chain D, S-adenosylmethionine Synthetase Complexed With Sam And
Ppnp
pdb|1MXA|A Chain A, S-Adenosylmethionine Synthetase With Ppi
pdb|1MXB|A Chain A, S-Adenosylmethionine Synthetase With Adp
pdb|1MXC|A Chain A, S-adenosylmethionine Synthetase With 8-br-adp
pdb|1XRA|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase
pdb|1XRC|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase
Length = 383
Score = 348 bits (894), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 178/356 (50%), Positives = 236/356 (66%), Gaps = 5/356 (1%)
Query: 1 MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGY 60
+ DQISDA+LDA L QDP A+VACET KTGMVL+ GEIT+ A VD +++TR T++ IGY
Sbjct: 18 IADQISDAVLDAILEQDPKARVACETYVKTGMVLVGGEITTSAWVDIEEITRNTVREIGY 77
Query: 61 DDSSKGFDYKTCSVMLCLDEQSPDIAAGVHINRDRDDVGAGDQGLMFGYATDETEECMPL 120
S GFD +C+V+ + +QSPDI GV D + GAGDQGLMFGYAT+ET+ MP
Sbjct: 78 VHSDMGFDANSCAVLSAIGKQSPDINQGVD-RADPLEQGAGDQGLMFGYATNETDVLMPA 136
Query: 121 TVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEYCFARGACXXXXXXXXXXXXXXXEK 180
+ AH+L Q+ A++R++G W RPD K+QVT +Y + E+
Sbjct: 137 PITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQYDDGK----IVGIDAVVLSTQHSEE 192
Query: 181 IGLKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIVDTYX 240
I K L+ VM ++IK ++PA++L T INP G F++GGP D GLTGRKIIVDTY
Sbjct: 193 IDQKSLQEAVMEEIIKPILPAEWLTSATKFFINPTGRFVIGGPMGDCGLTGRKIIVDTYG 252
Query: 241 XXXXXXXXXXXXKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISITL 300
KD +KVDRSAAYAAR+VAK++V AGL RC +QVSYAIGVAEP SI +
Sbjct: 253 GMARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMV 312
Query: 301 FDYGTSSRSHKELLSIVQRNFDLRPGKIVKDLNLRNPIYQQTSTYGHFGRDIFPWE 356
+GT ++L +V+ FDLRP +++ L+L +PIY++T+ YGHFGR+ FPWE
Sbjct: 313 ETFGTEKVPSEQLTLLVREFFDLRPYGLIQMLDLLHPIYKETAAYGHFGREHFPWE 368
>pdb|3IML|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase From
Burkholderia Pseudomallei
pdb|3IML|B Chain B, Crystal Structure Of S-Adenosylmethionine Synthetase From
Burkholderia Pseudomallei
pdb|3IML|C Chain C, Crystal Structure Of S-Adenosylmethionine Synthetase From
Burkholderia Pseudomallei
pdb|3IML|D Chain D, Crystal Structure Of S-Adenosylmethionine Synthetase From
Burkholderia Pseudomallei
Length = 399
Score = 343 bits (881), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 178/359 (49%), Positives = 234/359 (65%), Gaps = 7/359 (1%)
Query: 1 MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGY 60
+ DQISDAILDA L QD ++VA ET+ TG+V+L GEIT+ A +DY ++ R+TIK IGY
Sbjct: 24 VADQISDAILDAILAQDKYSRVAAETLCNTGLVVLAGEITTTANIDYIQIARDTIKRIGY 83
Query: 61 DDSSKGFDYKTCSVMLCLDEQSPDIAAGVHINRDRD-DVGAGDQGLMFGYATDETEECMP 119
D++ G DY+ C+V++ D+QSPDIA GV D + D GAGDQGLMFGYA DET E MP
Sbjct: 84 DNTDYGIDYRGCAVLVAYDKQSPDIAQGVDRAHDNNLDQGAGDQGLMFGYACDETPELMP 143
Query: 120 LTVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEYCFARGACXXXXXXXXXXXXXXXE 179
L + L+H+L ++ A+LRR G W RPD K+QVT Y +
Sbjct: 144 LPIHLSHRLVERQANLRRDGRLPWLRPDAKSQVTVRYVDGK----PHSIDTVVLSTQHAP 199
Query: 180 KIGLKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIVDTY 239
+I L LR V+ +VIK +PAD + + +NP G F++GGPQ D GLTGRKIIVDTY
Sbjct: 200 EIDLPALREAVIEEVIKPTLPADLIKGDIKFLVNPTGRFVIGGPQGDCGLTGRKIIVDTY 259
Query: 240 XXXXXXXXXXXXXKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISIT 299
KD +KVDRSAAYA R+VAK++V AGL R L+QVSYAIGVAEP S+
Sbjct: 260 GGAAPHGGGAFSGKDPSKVDRSAAYAGRYVAKNIVAAGLASRALIQVSYAIGVAEPTSVM 319
Query: 300 LFDYGTSSRSHKELLSIVQRNFDLRPGKIVKDLNLRNPIYQQTSTYGHFGRD--IFPWE 356
+ +GT S + + +V+ +FDLRP I++ L+L PIY++T+ YGHFGR+ F WE
Sbjct: 320 VNTFGTGRVSDETITKLVREHFDLRPKGIIQMLDLLRPIYEKTAAYGHFGREEPEFSWE 378
>pdb|1XRB|A Chain A, S-adenosylmethionine Synthetase (mat, Atp: L-methionine S-
Adenosyltransferase, E.c.2.5.1.6) In Which Met Residues
Are Replaced With Selenomethionine Residues (mse)
Length = 383
Score = 339 bits (869), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 175/356 (49%), Positives = 233/356 (65%), Gaps = 5/356 (1%)
Query: 1 MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGY 60
+ DQISDA+LDA L QDP A+VACET KTG VL+ GEIT+ A VD +++TR T++ IGY
Sbjct: 18 IADQISDAVLDAILEQDPKARVACETYVKTGXVLVGGEITTSAWVDIEEITRNTVREIGY 77
Query: 61 DDSSKGFDYKTCSVMLCLDEQSPDIAAGVHINRDRDDVGAGDQGLMFGYATDETEECMPL 120
S GFD +C+V+ + +QSPDI GV D + GAGDQGL FGYAT+ET+ P
Sbjct: 78 VHSDXGFDANSCAVLSAIGKQSPDINQGVD-RADPLEQGAGDQGLXFGYATNETDVLXPA 136
Query: 121 TVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEYCFARGACXXXXXXXXXXXXXXXEK 180
+ AH+L Q+ A++R++G W RPD K+QVT +Y + E+
Sbjct: 137 PITYAHRLVQRQAEVRKNGTLPWLRPDAKSQVTFQYDDGK----IVGIDAVVLSTQHSEE 192
Query: 181 IGLKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIVDTYX 240
I K L+ V ++IK ++PA++L T INP G F++GGP D GLTGRKIIVDTY
Sbjct: 193 IDQKSLQEAVXEEIIKPILPAEWLTSATKFFINPTGRFVIGGPXGDCGLTGRKIIVDTYG 252
Query: 241 XXXXXXXXXXXXKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISITL 300
KD +KVDRSAAYAAR+VAK++V AGL RC +QVSYAIGVAEP SI +
Sbjct: 253 GXARHGGGAFSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIXV 312
Query: 301 FDYGTSSRSHKELLSIVQRNFDLRPGKIVKDLNLRNPIYQQTSTYGHFGRDIFPWE 356
+GT ++L +V+ FDLRP +++ L+L +PIY++T+ YGHFGR+ FPWE
Sbjct: 313 ETFGTEKVPSEQLTLLVREFFDLRPYGLIQXLDLLHPIYKETAAYGHFGREHFPWE 368
>pdb|3S82|A Chain A, Structure Of A S-Adenosylmethionine Synthetase From
Mycobacterium Avium
pdb|3S82|B Chain B, Structure Of A S-Adenosylmethionine Synthetase From
Mycobacterium Avium
Length = 407
Score = 297 bits (761), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 168/374 (44%), Positives = 225/374 (60%), Gaps = 21/374 (5%)
Query: 1 MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITS---KAVVDYQKVTRETIKH 57
+CD ISD++LDA L QDP ++VA ET+ TG V + GE+T+ +A D RE I
Sbjct: 25 ICDAISDSVLDALLAQDPRSRVAVETLVTTGQVHVVGEVTTTAKEAFADITNTVRERILD 84
Query: 58 IGYDDSSKGFDYKTCSVMLCLDEQSPDIAAGVHINRDR---------DDVGAGDQGLMFG 108
IGYD S KGFD +C V + + QSPDIA GV + D GAGDQGLMFG
Sbjct: 85 IGYDSSDKGFDGASCGVNIGIGAQSPDIAQGVDTAHETRVEGAADPLDAQGAGDQGLMFG 144
Query: 109 YATDETEECMPLTVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEY---CFARGACXX 165
YA ++T E MPL + LAH+L++++ ++R++G + RPD KTQVT E+ R
Sbjct: 145 YAINDTPERMPLPIALAHRLSRRLTEVRKNGVLPYLRPDGKTQVTIEFEDDVPVR--LDT 202
Query: 166 XXXXXXXXXXXXXEKIGLKELRAEVMSKVIKAVIPADYLD-ENTIVHINPCGNFILGGPQ 224
E ++R +V++ V+ + D LD +T + +NP G F++GGP
Sbjct: 203 VVISTQHAADIDLENTLTPDIREKVLNTVLND-LAHDTLDTSSTRLLVNPTGKFVVGGPM 261
Query: 225 VDAGLTGRKIIVDTYXXXXXXXXXXXXXKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLV 284
DAGLTGRKIIVDTY KD +KVDRSAAYA RWVAK++V AGL R V
Sbjct: 262 GDAGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAMRWVAKNIVAAGLAERVEV 321
Query: 285 QVSYAIGVAEPISITLFDYGTSSRSHKELLSIVQRNFDLRPGKIVKDLNLRNPIYQQTST 344
QV+YAIG A P+ + + +GT++ ++ IV FDLRPG I++DL+L PIY QT+
Sbjct: 322 QVAYAIGKAAPVGLFIETFGTATVDPVKIEKIVPEVFDLRPGAIIRDLDLLRPIYAQTAA 381
Query: 345 YGHFGR-DI-FPWE 356
YGHFGR D+ PWE
Sbjct: 382 YGHFGRTDVELPWE 395
>pdb|3TDE|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase
Rv1392 From Mycobacterium Tuberculosis
pdb|3TDE|B Chain B, Crystal Structure Of S-Adenosylmethionine Synthetase
Rv1392 From Mycobacterium Tuberculosis
pdb|3TDE|C Chain C, Crystal Structure Of S-Adenosylmethionine Synthetase
Rv1392 From Mycobacterium Tuberculosis
pdb|3TDE|D Chain D, Crystal Structure Of S-Adenosylmethionine Synthetase
Rv1392 From Mycobacterium Tuberculosis
Length = 408
Score = 294 bits (752), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 167/374 (44%), Positives = 220/374 (58%), Gaps = 21/374 (5%)
Query: 1 MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITS---KAVVDYQKVTRETIKH 57
+CD ISD++LDA L DP ++VA ET+ TG V + GE+T+ +A D R I
Sbjct: 26 ICDAISDSVLDALLAADPRSRVAVETLVTTGQVHVVGEVTTSAKEAFADITNTVRARILE 85
Query: 58 IGYDDSSKGFDYKTCSVMLCLDEQSPDIAAGVHINRDR---------DDVGAGDQGLMFG 108
IGYD S KGFD TC V + + QSPDIA GV + D GAGDQGLMFG
Sbjct: 86 IGYDSSDKGFDGATCGVNIGIGAQSPDIAQGVDTAHEARVEGAADPLDSQGAGDQGLMFG 145
Query: 109 YATDETEECMPLTVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEY---CFARGACXX 165
YA + T E MPL + LAH+L++++ ++R++G + RPD KTQVT Y R
Sbjct: 146 YAINATPELMPLPIALAHRLSRRLTEVRKNGVLPYLRPDGKTQVTIAYEDNVPVR--LDT 203
Query: 166 XXXXXXXXXXXXXEKIGLKELRAEVMSKVIKAVIPADYLDENTI-VHINPCGNFILGGPQ 224
EK ++R +V++ V+ + + LD +T+ V +NP G F+LGGP
Sbjct: 204 VVISTQHAADIDLEKTLDPDIREKVLNTVLDD-LAHETLDASTVRVLVNPTGKFVLGGPM 262
Query: 225 VDAGLTGRKIIVDTYXXXXXXXXXXXXXKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLV 284
DAGLTGRKIIVDTY KD +KVDRSAAYA RWVAK++V AGL R V
Sbjct: 263 GDAGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAMRWVAKNVVAAGLAERVEV 322
Query: 285 QVSYAIGVAEPISITLFDYGTSSRSHKELLSIVQRNFDLRPGKIVKDLNLRNPIYQQTST 344
QV+YAIG A P+ + + +GT + ++ + FDLRPG I++DLNL PIY T+
Sbjct: 323 QVAYAIGKAAPVGLFVETFGTETEDPVKIEKAIGEVFDLRPGAIIRDLNLLRPIYAPTAA 382
Query: 345 YGHFGR-DI-FPWE 356
YGHFGR D+ PWE
Sbjct: 383 YGHFGRTDVELPWE 396
>pdb|3RV2|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase From
Mycobacterium Marinum
pdb|3RV2|B Chain B, Crystal Structure Of S-Adenosylmethionine Synthetase From
Mycobacterium Marinum
Length = 407
Score = 292 bits (747), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 164/374 (43%), Positives = 221/374 (59%), Gaps = 21/374 (5%)
Query: 1 MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITS---KAVVDYQKVTRETIKH 57
+CD +SD++LDA L DP ++VA ET+ TG V + GE+T+ +A D + RE I
Sbjct: 25 ICDAVSDSVLDALLAADPRSRVAVETLVTTGQVHVVGEVTTTAKEAFADITNIVRERILD 84
Query: 58 IGYDDSSKGFDYKTCSVMLCLDEQSPDIAAGVHINRDR---------DDVGAGDQGLMFG 108
IGYD S KGFD +C V + + QSPDIA GV + D GAGDQGLMFG
Sbjct: 85 IGYDSSDKGFDGASCGVNIGIGAQSPDIAQGVDTAHEARVEGAADPLDAQGAGDQGLMFG 144
Query: 109 YATDETEECMPLTVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEYCFARGACXXXXX 168
YA ++T E MPL + LAH+L++++ ++R++G + RPD KTQVT Y
Sbjct: 145 YAINDTPELMPLPIALAHRLSRRLTEVRKNGVLPYLRPDGKTQVTIAY---EDRVPVRLD 201
Query: 169 XXXXXXXXXXEKIGLKELRAEVMSKVIKAVI---PADYLDENTI-VHINPCGNFILGGPQ 224
+ +K L ++ +V+K V+ D LD + + V +NP G F+LGGP
Sbjct: 202 TVVISTQHADDIDLVKTLDPDIREQVLKTVLDDLAHDTLDASAVRVLVNPTGKFVLGGPM 261
Query: 225 VDAGLTGRKIIVDTYXXXXXXXXXXXXXKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLV 284
DAGLTGRKIIVDTY KD +KVDRSAAYA RWVAK++V AGL R V
Sbjct: 262 GDAGLTGRKIIVDTYGGWARHGGGAFSGKDPSKVDRSAAYAMRWVAKNVVAAGLAERVEV 321
Query: 285 QVSYAIGVAEPISITLFDYGTSSRSHKELLSIVQRNFDLRPGKIVKDLNLRNPIYQQTST 344
QV+YAIG A P+ + + +G+ + ++ + FDLRPG I++DLNL PIY T+
Sbjct: 322 QVAYAIGKAAPVGLFVETFGSEAVDPVKIEKAIGEVFDLRPGAIIRDLNLLRPIYAPTAA 381
Query: 345 YGHFGR-DI-FPWE 356
YGHFGR D+ PWE
Sbjct: 382 YGHFGRTDVDLPWE 395
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,966,246
Number of Sequences: 62578
Number of extensions: 368173
Number of successful extensions: 695
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 666
Number of HSP's gapped (non-prelim): 13
length of query: 364
length of database: 14,973,337
effective HSP length: 100
effective length of query: 264
effective length of database: 8,715,537
effective search space: 2300901768
effective search space used: 2300901768
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)