Query psy10894
Match_columns 364
No_of_seqs 166 out of 1106
Neff 4.3
Searched_HMMs 46136
Date Fri Aug 16 21:10:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10894.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10894hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0192 MetK S-adenosylmethion 100.0 2E-178 3E-183 1293.1 37.4 359 1-362 20-380 (388)
2 TIGR01034 metK S-adenosylmethi 100.0 1E-175 2E-180 1284.0 39.4 357 1-362 15-371 (377)
3 PRK12459 S-adenosylmethionine 100.0 9E-175 2E-179 1281.4 39.7 356 1-362 19-378 (386)
4 PLN02243 S-adenosylmethionine 100.0 2E-174 5E-179 1277.1 41.0 361 1-361 19-386 (386)
5 PTZ00104 S-adenosylmethionine 100.0 2E-174 5E-179 1281.3 39.7 364 1-364 26-394 (398)
6 PRK05250 S-adenosylmethionine 100.0 7E-174 2E-178 1274.6 39.9 357 1-362 18-376 (384)
7 KOG1506|consensus 100.0 3E-167 6E-172 1187.4 32.4 363 1-363 21-383 (383)
8 PF02773 S-AdoMet_synt_C: S-ad 100.0 2.3E-86 5E-91 576.8 10.4 138 220-357 1-138 (138)
9 PF02772 S-AdoMet_synt_M: S-ad 100.0 2.3E-57 4.9E-62 389.2 12.5 120 96-218 1-120 (120)
10 PF00438 S-AdoMet_synt_N: S-ad 100.0 2.4E-34 5.2E-39 240.2 6.2 83 1-83 18-100 (100)
11 PRK04439 S-adenosylmethionine 98.1 0.0003 6.5E-09 71.8 20.2 280 17-322 62-382 (399)
12 PF01941 AdoMet_Synthase: S-ad 98.1 0.00037 8.1E-09 71.1 20.7 281 17-321 62-381 (396)
13 COG1812 MetK Archaeal S-adenos 94.5 1.9 4.2E-05 44.3 16.0 250 32-302 85-361 (400)
14 COG1325 Predicted exosome subu 72.5 4.6 9.9E-05 36.9 3.7 51 282-351 3-53 (149)
15 TIGR00590 pcna proliferating c 52.7 1.9E+02 0.0042 27.8 11.1 38 261-302 204-241 (259)
16 PRK11198 LysM domain/BON super 45.0 36 0.00078 30.2 4.5 39 3-42 25-63 (147)
17 PF02980 FokI_C: Restriction e 43.3 22 0.00048 32.3 2.8 37 258-294 77-113 (142)
18 PRK14031 glutamate dehydrogena 43.2 37 0.0008 35.8 4.9 104 179-285 95-234 (444)
19 PF14084 DUF4264: Protein of u 42.9 6.5 0.00014 30.1 -0.5 39 80-122 11-49 (52)
20 PRK11023 outer membrane lipopr 41.4 42 0.00091 31.0 4.5 37 5-41 128-164 (191)
21 PF04208 MtrA: Tetrahydrometha 38.9 39 0.00085 31.7 3.8 41 16-57 18-65 (176)
22 TIGR02889 spore_YpeB germinati 38.2 2E+02 0.0044 30.4 9.3 97 20-121 262-371 (435)
23 PRK10430 DNA-binding transcrip 36.3 36 0.00078 31.1 3.2 45 308-352 159-221 (239)
24 KOG3447|consensus 33.2 15 0.00033 33.2 0.2 12 229-240 95-106 (150)
25 COG4669 EscJ Type III secretor 30.3 1.6E+02 0.0035 29.1 6.6 92 111-215 97-190 (246)
26 PRK14053 methyltransferase; Pr 29.5 73 0.0016 30.3 4.0 41 16-57 18-62 (194)
27 PRK14555 hypothetical protein; 29.4 32 0.0007 30.9 1.6 44 299-351 6-49 (145)
28 PTZ00079 NADP-specific glutama 28.9 1.4E+02 0.003 31.9 6.3 95 179-273 104-231 (454)
29 PF02171 Piwi: Piwi domain; I 28.6 48 0.001 31.7 2.7 22 114-135 279-300 (302)
30 PF03769 Attacin_C: Attacin, C 28.3 1E+02 0.0022 27.3 4.5 56 169-256 56-111 (122)
31 PRK10568 periplasmic protein; 28.3 1E+02 0.0022 28.8 4.8 38 5-42 61-98 (203)
32 PF00352 TBP: Transcription fa 27.6 56 0.0012 26.2 2.6 57 166-223 4-65 (86)
33 PRK00964 tetrahydromethanopter 27.5 71 0.0015 31.1 3.6 41 16-57 21-69 (225)
34 PRK11023 outer membrane lipopr 25.6 1.1E+02 0.0024 28.2 4.5 37 5-42 50-88 (191)
35 cd01269 PLX Pollux (PLX) Phosp 25.5 1.9E+02 0.0041 26.0 5.7 82 33-115 6-94 (129)
36 PF04566 RNA_pol_Rpb2_4: RNA p 25.2 1.3E+02 0.0029 23.3 4.2 26 126-158 15-40 (63)
37 PF07918 CAP160: CAP160 repeat 25.1 39 0.00084 22.7 1.0 10 269-278 14-23 (27)
38 PRK04964 hypothetical protein; 25.0 65 0.0014 25.8 2.4 30 97-141 14-43 (66)
39 PRK14030 glutamate dehydrogena 24.4 2.2E+02 0.0048 30.3 6.8 95 179-273 95-222 (445)
40 PRK07308 flavodoxin; Validated 24.2 1.1E+02 0.0025 26.1 4.0 55 262-318 15-73 (146)
41 KOG2978|consensus 23.6 81 0.0018 30.6 3.2 37 285-322 197-233 (238)
42 PF06786 UPF0253: Uncharacteri 23.2 76 0.0016 25.4 2.4 31 97-142 14-44 (66)
43 COG4081 Uncharacterized protei 22.9 52 0.0011 29.9 1.7 23 109-131 9-31 (148)
44 PF00403 HMA: Heavy-metal-asso 22.6 3E+02 0.0065 19.9 5.5 54 2-61 9-62 (62)
45 PF02801 Ketoacyl-synt_C: Beta 22.2 1.2E+02 0.0026 25.3 3.7 80 250-349 11-92 (119)
46 KOG1406|consensus 21.6 52 0.0011 33.4 1.6 21 209-229 334-355 (408)
47 KOG2126|consensus 21.4 1E+02 0.0022 35.5 3.8 52 176-250 221-274 (895)
48 smart00760 Bac_DnaA_C Bacteria 21.3 98 0.0021 23.1 2.7 24 310-333 2-25 (60)
49 COG2823 OsmY Predicted peripla 21.2 1.5E+02 0.0033 28.1 4.5 39 4-42 131-169 (196)
50 TIGR01111 mtrA N5-methyltetrah 20.6 1.2E+02 0.0025 29.9 3.6 41 16-57 21-69 (238)
51 PF04972 BON: BON domain; Int 20.3 1.7E+02 0.0036 21.5 3.7 21 23-43 18-38 (64)
52 TIGR03315 Se_ygfK putative sel 20.1 69 0.0015 37.2 2.4 18 115-132 325-342 (1012)
No 1
>COG0192 MetK S-adenosylmethionine synthetase [Coenzyme metabolism]
Probab=100.00 E-value=1.5e-178 Score=1293.08 Aligned_cols=359 Identities=57% Similarity=0.973 Sum_probs=351.5
Q ss_pred CchhhhhHHHHHHhccCCCCcEEEEEEeecCeEEEEEEEeecccccHHHHHHHHHhhcCCCCCCCCCcCCceEEEEeecc
Q psy10894 1 MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGYDDSSKGFDYKTCSVMLCLDE 80 (364)
Q Consensus 1 icDqISDaILDa~L~~Dp~arVA~Et~v~~~~v~v~GEitt~a~vd~~~ivR~~i~~IGY~~~~~gfd~~~c~V~~~i~~ 80 (364)
|||||||||||+||+|||+|||||||++++|+|+|+|||+|+++||+++++|++|++|||+++++|||+++|.|+++|++
T Consensus 20 i~DqISDaILD~~L~~Dp~srVAcEt~v~tg~v~i~GEitt~~~vd~~~~~r~~I~~IGY~~~~~Gfd~~t~~vl~~i~~ 99 (388)
T COG0192 20 ICDQISDAILDAILKQDPNSRVACETLVTTGLVVIAGEITTSAYVDIVNIARKTIKEIGYTESDYGFDAKTCAVLVAIGE 99 (388)
T ss_pred HHHHHhHHHHHHHHhcCCCceEEEEEEEecCeEEEEEEEecCccccHHHHHHHHHHHhCCCccccCcCccceEEEeeccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhhhcccCCC-CCCCCCCCCcceeEEeecCCCCCCCchHHHHHHHHHHHHHHHHHcCCCceecCCCceeEEEEEeec
Q psy10894 81 QSPDIAAGVHINR-DRDDVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEYCFA 159 (364)
Q Consensus 81 QS~dIa~gV~~~~-~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~~~~~~l~pD~KtQVtv~Y~~~ 159 (364)
|||||+|||+... ..+++|||||||||||||||||+||||||+|||+|++||+++||+|.+||||||+||||||+|++
T Consensus 100 QSpDIaqgVd~~~~~~~~~GAGDQGimFGyA~~ET~~lMPlpI~lAH~l~~r~a~~Rk~g~l~~LrpD~KsQVtv~Y~~- 178 (388)
T COG0192 100 QSPDIAQGVDEADEELDEIGAGDQGIMFGYACNETPELMPLPISLAHRLLRRLAEVRKNGELPWLRPDAKSQVTVEYED- 178 (388)
T ss_pred CChhHHHhhhhcccchhhcCCCcceeEeeeecCCcccccChHHHHHHHHHHHHHHHHhcCCCcccCCCcceeEEEEEcC-
Confidence 9999999999753 34689999999999999999999999999999999999999999999999999999999999985
Q ss_pred CCccceeeEEEEEEEeeeCCCCCHHHHHHHHHHHHhhhhcCCCCCCCCcEEEEcCCCCeEeccCCCCcccCCceeEEecC
Q psy10894 160 RGACVPRRVHTVVVSVQHSEKIGLKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIVDTY 239 (364)
Q Consensus 160 ~~~~~p~ri~tiviS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTY 239 (364)
++ +|++|+|||+|+||++++++++|++.++|+||+|++|+++++++|+|+||||||||||||+|||||||||||||||
T Consensus 179 ~~--~p~~idtIvvStQH~~~i~~~~l~~~v~e~iI~pv~~~~~l~~~tk~~INPtGrFViGGP~gD~GLTGRKIIVDTY 256 (388)
T COG0192 179 NG--KPVRIDTIVVSTQHDPDISQEQLREDVIEEIIKPVLPEELLDDKTKYFINPTGRFVIGGPQGDAGLTGRKIIVDTY 256 (388)
T ss_pred CC--CceeEEEEEEEeccCcccCHHHHHHHHHHHHHhhhccHhhcCcCceEEECCCCCeeeCCCCccccCccceEEEEcC
Confidence 35 8999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccccCCCCCccchhHhHHHHHHHHHHHHhcccCeeEEEEEEEecccceeeEEEEecCCCCCcHHHHHHHHHH
Q psy10894 240 GGWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISITLFDYGTSSRSHKELLSIVQR 319 (364)
Q Consensus 240 GG~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~cevqlsYAIGva~PvSi~VdtfgT~~~~~~~i~~~v~~ 319 (364)
|||++|||||||||||||||||||||||||||||||||||+|||||||||||+|+|+||+||||||+++++++|.++|++
T Consensus 257 GG~a~HGGGAFSGKDptKVDRSaAYaARyvAKNiVAAglA~~ceVQlsYAIGva~PvSi~VdtfgT~kvse~~i~~~v~~ 336 (388)
T COG0192 257 GGYARHGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLADRCEVQLSYAIGVAEPVSISVDTFGTGKVSEEKIEEAVRK 336 (388)
T ss_pred CCccCCCCccCCCCCCcccchHHHHHHHHHHHHHHHhhhhhheEEEEEeEecccCceEEEEEccCCcccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHhccCCcchhhhccccCCCCCC-CCCCCCCCCC
Q psy10894 320 NFDLRPGKIVKDLNLRNPIYQQTSTYGHFGRDI-FPWEVPKPLV 362 (364)
Q Consensus 320 ~Fdl~p~~Ii~~L~L~~piY~~ta~yGHFGr~~-fpWE~~d~~~ 362 (364)
+|||||++||+.|+|++|||++||+||||||++ |||||||+++
T Consensus 337 ~FdlrP~gIi~~LdL~~piY~~tAaYGHFGr~~~~pWEk~dkv~ 380 (388)
T COG0192 337 VFDLRPAGIIKMLDLLRPIYRKTAAYGHFGREDDFPWEKLDKVD 380 (388)
T ss_pred hcCCCHHHHHHHhccCCccchhcccccccCCCCCCCccchhhHH
Confidence 999999999999999999999999999999995 9999999874
No 2
>TIGR01034 metK S-adenosylmethionine synthetase. Tandem isozymes of this S-adenosylmethionine synthetase in E. coli are designated MetK and MetX.
Probab=100.00 E-value=1e-175 Score=1284.02 Aligned_cols=357 Identities=61% Similarity=1.016 Sum_probs=349.1
Q ss_pred CchhhhhHHHHHHhccCCCCcEEEEEEeecCeEEEEEEEeecccccHHHHHHHHHhhcCCCCCCCCCcCCceEEEEeecc
Q psy10894 1 MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGYDDSSKGFDYKTCSVMLCLDE 80 (364)
Q Consensus 1 icDqISDaILDa~L~~Dp~arVA~Et~v~~~~v~v~GEitt~a~vd~~~ivR~~i~~IGY~~~~~gfd~~~c~V~~~i~~ 80 (364)
|||||||||||+||+|||+|||||||++++|+|+|+|||||+++||++++||++|++|||+++++|||+++|.|+++|++
T Consensus 15 icDqISDaILD~~L~~Dp~srVA~Et~v~~~~V~i~GEitt~~~vd~~~ivR~~i~~IGY~~~~~gfd~~t~~v~~~i~~ 94 (377)
T TIGR01034 15 IADQISDAVLDAILKQDPKAKVACETFVKTGLVLIGGEITTSAYVDIQEVARNTIKDIGYTDSDYGFDAKTCAVLVAIGN 94 (377)
T ss_pred HHHHHHHHHHHHHHhhCCCCcEEEEEEeecCeEEEEEEEcCCccCCHHHHHHHHHHHhCCCCcccCCCCCceEEEecCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhhhcccCCCCCCCCCCCCcceeEEeecCCCCCCCchHHHHHHHHHHHHHHHHHcCCCceecCCCceeEEEEEeecC
Q psy10894 81 QSPDIAAGVHINRDRDDVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEYCFAR 160 (364)
Q Consensus 81 QS~dIa~gV~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~~~~~~l~pD~KtQVtv~Y~~~~ 160 (364)
|||||+|||+..+ .+++|||||||||||||||||+||||||+|||+|++||+++||+|.+|||||||||||||+|++
T Consensus 95 QSpDIa~gV~~~~-~~~iGAGDQGimfGYA~~ET~e~MPl~i~lAh~l~~~l~~~Rk~g~~~~l~PD~KtQVtveY~~-- 171 (377)
T TIGR01034 95 QSPDIAQGVDKAN-PEEQGAGDQGIMFGYATNETPELMPLPITLAHKLLKRAAELRKSGTLPWLRPDGKSQVTVQYED-- 171 (377)
T ss_pred CChHHHhccccCc-cccCCCCcceeeeeeecCCCcccCChHHHHHHHHHHHHHHHHhcCCCCeecCCCceEEEEEEEC--
Confidence 9999999998542 2468999999999999999999999999999999999999999999999999999999999963
Q ss_pred CccceeeEEEEEEEeeeCCCCCHHHHHHHHHHHHhhhhcCCCCCCCCcEEEEcCCCCeEeccCCCCcccCCceeEEecCC
Q psy10894 161 GACVPRRVHTVVVSVQHSEKIGLKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIVDTYG 240 (364)
Q Consensus 161 ~~~~p~ri~tiviS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYG 240 (364)
+ +|+||+|||||+||++++++++|+++|+|+||+|++|++|++++|+||||||||||+|||+||||||||||||||||
T Consensus 172 ~--~P~rv~tivvS~QH~~~v~~~~l~~~i~~~vi~~v~~~~~~~~~t~~~INPtGrFviGGP~gDtGLTGRKIiVDTYG 249 (377)
T TIGR01034 172 N--KPVRVDTIVLSTQHDPDISQKDLREAIIEEIIKPVLPAEYLDEKTKFFINPTGRFVIGGPMGDTGLTGRKIIVDTYG 249 (377)
T ss_pred C--ceeEEEEEEEecCCCCCCCHHHHHHHHHHHHhHHhcCcccCCCCcEEEECCCCCeEeCCCccccccccceEEEeccC
Confidence 4 79999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccccCCCCCccchhHhHHHHHHHHHHHHhcccCeeEEEEEEEecccceeeEEEEecCCCCCcHHHHHHHHHHc
Q psy10894 241 GWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISITLFDYGTSSRSHKELLSIVQRN 320 (364)
Q Consensus 241 G~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~cevqlsYAIGva~PvSi~VdtfgT~~~~~~~i~~~v~~~ 320 (364)
||++|||||||||||||||||||||||||||||||||||+|||||||||||+++||||+||||||+++++++|.++|+++
T Consensus 250 G~~~hGGGAFSGKDptKVDRSaAY~AR~iAKniVaAgla~~c~VQlsYaIGva~Pvsi~V~tfGT~~~~~~~i~~~v~~~ 329 (377)
T TIGR01034 250 GWARHGGGAFSGKDPSKVDRSAAYAARYIAKNIVAAGLADRCEVQLSYAIGVAEPVSIMIETFGTSKKSEEELLNVVKEN 329 (377)
T ss_pred cccccCCccccCCCcchhhhHHHHHHHHHHHHHHhhcCcceeEEEEEEEcCcCCCceEEEEcCCCccCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhccCCcchhhhccccCCCCCCCCCCCCCCCC
Q psy10894 321 FDLRPGKIVKDLNLRNPIYQQTSTYGHFGRDIFPWEVPKPLV 362 (364)
Q Consensus 321 Fdl~p~~Ii~~L~L~~piY~~ta~yGHFGr~~fpWE~~d~~~ 362 (364)
|||||++||++|+|++|+|++||+||||||++||||++|+++
T Consensus 330 FdlrP~~Ii~~L~L~~piY~~ta~yGHFGr~~~~WE~~d~~~ 371 (377)
T TIGR01034 330 FDLRPGGIIEKLDLLKPIYRKTAVYGHFGREEFPWEKPDKLE 371 (377)
T ss_pred cCCCHHHHHHHhCCCCchhhhhcccCCCCCCCCCccccchHH
Confidence 999999999999999999999999999999999999999764
No 3
>PRK12459 S-adenosylmethionine synthetase; Provisional
Probab=100.00 E-value=9.5e-175 Score=1281.38 Aligned_cols=356 Identities=57% Similarity=0.957 Sum_probs=346.5
Q ss_pred CchhhhhHHHHHHhccCCCCcEEEEEEeecCeEEEEEEEeecccccHHHHHHHHHhhcCCCCCCCCCcCCceEEEEeecc
Q psy10894 1 MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGYDDSSKGFDYKTCSVMLCLDE 80 (364)
Q Consensus 1 icDqISDaILDa~L~~Dp~arVA~Et~v~~~~v~v~GEitt~a~vd~~~ivR~~i~~IGY~~~~~gfd~~~c~V~~~i~~ 80 (364)
|||||||||||+||+|||+|||||||++++|+|+|+|||||+|+||++++||++|++|||+ ++|||+++|.|+++|++
T Consensus 19 icDqISDaILDa~L~qDp~srVA~Et~v~~~~V~v~GEitt~a~vdi~~ivR~~i~~IGY~--~~gfd~~t~~v~~~i~~ 96 (386)
T PRK12459 19 LCDQISDAILDACLRQDPASRVACEVLVSTGIVIVAGEITSSAKVDIEKIVRNVIKEIGYD--ELGFDPRTCTVLVSLGE 96 (386)
T ss_pred HHhhHHHHHHHHHHhhCCCCcEEEEEEeecCeEEEEEEEccCccCCHHHHHHHHHHHhCCC--CCCCCCCceEEEecccc
Confidence 6999999999999999999999999999999999999999999999999999999999999 78999999999999999
Q ss_pred cChhhhhcccCC----CCCCCCCCCCcceeEEeecCCCCCCCchHHHHHHHHHHHHHHHHHcCCCceecCCCceeEEEEE
Q psy10894 81 QSPDIAAGVHIN----RDRDDVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEY 156 (364)
Q Consensus 81 QS~dIa~gV~~~----~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~~~~~~l~pD~KtQVtv~Y 156 (364)
|||||+|||+.. +..+++|||||||||||||||||+||||||+|||+|+++|+++||+|.+|||||||||||||+|
T Consensus 97 QSpdIa~gV~~~~~~~~~~~~iGAGDQGimfGYA~~ET~~~MPlpi~lAh~l~~~l~~~Rk~g~~~~l~PD~KsQVtv~Y 176 (386)
T PRK12459 97 QSPDIAQGVDTAEGRDEELEELGAGDQGTMFGYACDETPELMPLPIVLAHRLAKRLDQARKDGLLPGLLPDGKTQVTVEY 176 (386)
T ss_pred CChhHhcccccccccccccccCCCCcceEeeeeecCCCcccCChHHHHHHHHHHHHHHHHhcCCCCeecCCCceEEEEEe
Confidence 999999999743 1124689999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCccceeeEEEEEEEeeeCCCCCHHHHHHHHHHHHhhhhcCCCCCCCCcEEEEcCCCCeEeccCCCCcccCCceeEE
Q psy10894 157 CFARGACVPRRVHTVVVSVQHSEKIGLKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIV 236 (364)
Q Consensus 157 ~~~~~~~~p~ri~tiviS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiV 236 (364)
++ + +|+||+|||||+||++++++++++++|+|+||+|++|++|++++|+||||||||||+|||+||||||||||||
T Consensus 177 ~~--~--~P~rv~tivvS~QH~~~v~~~~~~~~i~e~vi~~v~~~~~~~~~t~~~INPtGrFviGGP~gD~GLTGRKIiV 252 (386)
T PRK12459 177 ED--G--RPVRVDTIVVSAQHDESVDLETLRRDVIENVIKPVFEDFWLDDETRILINPTGRFVVGGPAADTGLTGRKIMV 252 (386)
T ss_pred eC--C--ceeEEEEEEEeeccCCCCCHHHHHHHHHHHHHHHhcCcccCCCCcEEEECCCCCeEeCCCcccccccCceEEE
Confidence 63 4 7999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCccccccccccCCCCCccchhHhHHHHHHHHHHHHhcccCeeEEEEEEEecccceeeEEEEecCCCCCcHHHHHHH
Q psy10894 237 DTYGGWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISITLFDYGTSSRSHKELLSI 316 (364)
Q Consensus 237 DTYGG~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~cevqlsYAIGva~PvSi~VdtfgT~~~~~~~i~~~ 316 (364)
||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++||||+||||||+++++++|.++
T Consensus 253 DTYGG~~~HGGGAFSGKDptKVDRSaAY~AR~iAKniVaAGlA~~ceVQlsYAIGva~Pvsi~V~TfGT~~~~~~~i~~~ 332 (386)
T PRK12459 253 DTYGGYARHGGGAFSGKDPSKVDRSAAYAARYIAKNIVAAGLAKRCEVQLSYAIGKARPVSVQVNTFGTGTVSDEELTRA 332 (386)
T ss_pred EcCCcccccCCccccCCCcchhhhHHHHHHHHHHHHHHhhcCccceEEEEEEeecccccceEEEEeCCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCHHHHHHHhccCCcchhhhccccCCCCCCCCCCCCCCCC
Q psy10894 317 VQRNFDLRPGKIVKDLNLRNPIYQQTSTYGHFGRDIFPWEVPKPLV 362 (364)
Q Consensus 317 v~~~Fdl~p~~Ii~~L~L~~piY~~ta~yGHFGr~~fpWE~~d~~~ 362 (364)
|+++|||||++||++|+|++|+|++||+||||||++||||+||++.
T Consensus 333 i~~~Fdl~P~~Ii~~L~L~~piY~~ta~yGHFGr~~f~WE~~d~~~ 378 (386)
T PRK12459 333 VREHFDLRPAGIIEKLNLRNPIYRKTAAYGHFGRTLFPWEKTDKAA 378 (386)
T ss_pred HHHHcCCCHHHHHHHcCCCCchhhhhcccCCCCCCCCCcccccHHH
Confidence 9999999999999999999999999999999999999999999764
No 4
>PLN02243 S-adenosylmethionine synthase
Probab=100.00 E-value=2.5e-174 Score=1277.14 Aligned_cols=361 Identities=60% Similarity=1.000 Sum_probs=349.3
Q ss_pred CchhhhhHHHHHHhccCCCCcEEEEEEeecCeEEEEEEEeecccccHHHHHHHHHhhcCCCCCCCCCcCCceEEEEeecc
Q psy10894 1 MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGYDDSSKGFDYKTCSVMLCLDE 80 (364)
Q Consensus 1 icDqISDaILDa~L~~Dp~arVA~Et~v~~~~v~v~GEitt~a~vd~~~ivR~~i~~IGY~~~~~gfd~~~c~V~~~i~~ 80 (364)
|||||||||||+||+|||+|||||||++++|+|+|+|||||+++||++++||++|++|||+++++|||+++|.|+++|++
T Consensus 19 icDqISDaILDa~L~qDp~srVA~Et~v~~~~V~i~GEitt~a~vd~~~ivR~~i~~IGY~~~~~gfd~~t~~v~~~i~~ 98 (386)
T PLN02243 19 LCDQISDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCREIGFVSDDVGLDADKCKVLVNIEQ 98 (386)
T ss_pred HHHHHHHHHHHHHHhhCCCCcEEEEEEEECCEEEEEEEECCCCcCCHHHHHHHHHHHhCCCCcccCcCCCceEEEecCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhhhcccCC--CCCCCCCCCCcceeEEeecCCCCCCCchHHHHHHHHHHHHHHHHHcCCCceecCCCceeEEEEEee
Q psy10894 81 QSPDIAAGVHIN--RDRDDVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEYCF 158 (364)
Q Consensus 81 QS~dIa~gV~~~--~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~~~~~~l~pD~KtQVtv~Y~~ 158 (364)
|||||+|||+.. +..+++|||||||||||||||||+||||||+|||+|+++|+++||+|.+|||||||||||||+|++
T Consensus 99 QSpdIa~gV~~~~~~~~~~iGAGDQGimfGYA~~ET~e~MPlpi~lAh~l~~~l~~~Rk~~~~~~l~PD~KsQVtv~Y~~ 178 (386)
T PLN02243 99 QSPDIAQGVHGHLTKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYKN 178 (386)
T ss_pred CChhHhhccccccccccccCCCCcceEEeeeecCCCcccCChHHHHHHHHHHHHHHHHhcCCCCeecCCCceEEEEEeec
Confidence 999999999853 122358999999999999999999999999999999999999999999999999999999999975
Q ss_pred cCCccceeeEEEEEEEeeeCCCCCHHHHHHHHHHHHhhhhcCCCCCCCCcEEEEcCCCCeEeccCCCCcccCCceeEEec
Q psy10894 159 ARGACVPRRVHTVVVSVQHSEKIGLKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIVDT 238 (364)
Q Consensus 159 ~~~~~~p~ri~tiviS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDT 238 (364)
+.+.++|+||++||||+||++++++++|+++|+|+||+|++|+++++++|+||||||||||+|||.||||||||||||||
T Consensus 179 ~~~~~~p~rv~tivvS~QH~~~v~~~~l~~~i~e~vi~~v~~~~~~~~~t~~~INPtGrFviGGP~~D~GLTGRKIiVDT 258 (386)
T PLN02243 179 EGGAMVPIRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDT 258 (386)
T ss_pred CCCCccceeEeEEEEeeccCCCCCHHHHHHHHHHHHhHHhcCcccCCCCcEEEECCCCCeEeCCCcccccccCceEEEEc
Confidence 32534599999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccccccCCCCCccchhHhHHHHHHHHHHHHhcccCeeEEEEEEEecccceeeEEEEecCCCCCcHHHHHHHHH
Q psy10894 239 YGGWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISITLFDYGTSSRSHKELLSIVQ 318 (364)
Q Consensus 239 YGG~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~cevqlsYAIGva~PvSi~VdtfgT~~~~~~~i~~~v~ 318 (364)
||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++||||+||||||+++++++|.++|+
T Consensus 259 YGG~~~hGGGAFSGKDptKVDRSaAY~AR~iAKniVaaglA~rceVQlsYAIGva~Pvsi~V~TfGT~~~~d~~i~~~v~ 338 (386)
T PLN02243 259 YGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVAAGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILKIVK 338 (386)
T ss_pred CCCccCCCCccccCCCcchhhhHHHHHHHHHHHHHHhhcCCCeeEEEEEEEcccCcCcEEEEecCCCCcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCHHHHHHHhccCC---cchhhhccccCCCCC--CCCCCCCCCC
Q psy10894 319 RNFDLRPGKIVKDLNLRN---PIYQQTSTYGHFGRD--IFPWEVPKPL 361 (364)
Q Consensus 319 ~~Fdl~p~~Ii~~L~L~~---piY~~ta~yGHFGr~--~fpWE~~d~~ 361 (364)
++|||||++||++|+|++ |||++||+||||||+ +|||||||++
T Consensus 339 ~~Fdlrp~~Ii~~L~L~~~~~piY~~ta~yGHFGr~~~~fpWE~~d~~ 386 (386)
T PLN02243 339 ENFDFRPGMIAINLDLKRGGNGRFQKTAAYGHFGRDDPDFTWEVVKPL 386 (386)
T ss_pred HHcCCCHHHHHHhcCCCCCCCCcchhccccCCCCCCCCCCCccccCCC
Confidence 999999999999999999 999999999999998 5999999985
No 5
>PTZ00104 S-adenosylmethionine synthase; Provisional
Probab=100.00 E-value=2.3e-174 Score=1281.26 Aligned_cols=364 Identities=66% Similarity=1.128 Sum_probs=351.6
Q ss_pred CchhhhhHHHHHHhccCCCCcEEEEEEeecCeEEEEEEEeecccccHHHHHHHHHhhcCCCCCCCCCcCCceEEEEeecc
Q psy10894 1 MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGYDDSSKGFDYKTCSVMLCLDE 80 (364)
Q Consensus 1 icDqISDaILDa~L~~Dp~arVA~Et~v~~~~v~v~GEitt~a~vd~~~ivR~~i~~IGY~~~~~gfd~~~c~V~~~i~~ 80 (364)
|||||||||||+||+|||+|||||||++++|+|+|+|||+|+++||++++||++|++|||+++++|||+++|.|+++|++
T Consensus 26 icDqISDaILD~~L~qDp~srVA~Et~v~~~~V~v~GEitt~a~vDi~~ivR~~i~~IGY~~~~~gfd~~t~~v~~~i~~ 105 (398)
T PTZ00104 26 LCDQISDAVLDACLAQDPLSKVACETCAKTGMVMVFGEITTKAVVDYQKVVRDTVKEIGYDDTEKGLDYKTCNVLVAIEQ 105 (398)
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEEEEeCCEEEEEEEEcCCccCCHHHHHHHHHHHhCCCCcccCcCCCceEEEecCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhhhcccCCCCCCCCCCCCcceeEEeecCCCCCCCchHHHHHHHHHHHHHHHHHcCCCceecCCCceeEEEEEeecC
Q psy10894 81 QSPDIAAGVHINRDRDDVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEYCFAR 160 (364)
Q Consensus 81 QS~dIa~gV~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~~~~~~l~pD~KtQVtv~Y~~~~ 160 (364)
|||||+|||+.+...+++|||||||||||||||||+||||||+|||+|++||+++||+|.+|||||||||||||+|+++.
T Consensus 106 QSpDIa~gV~~~~~~~~iGAGDQGimfGYA~~ET~~~MPlpi~lAh~L~~~l~~~Rk~~~~~~L~PD~KsQVtv~Y~~~~ 185 (398)
T PTZ00104 106 QSPDIAQGVHVGKKEEDIGAGDQGIMFGYATDETEELMPLTHELATKLAKRLSELRKNGILPWLRPDAKTQVTVEYEYDT 185 (398)
T ss_pred CChhHhhccccccccccCCCCccceeeeeecCCCcccCCcHHHHHHHHHHHHHHHHhcCCCCeeccCCceEEEEEeccCC
Confidence 99999999985422246899999999999999999999999999999999999999999999999999999999996531
Q ss_pred -CccceeeEEEEEEEeeeCCCCCHHHHHHHHHHHHhhhhcCCCCCCCCcEEEEcCCCCeEeccCCCCcccCCceeEEecC
Q psy10894 161 -GACVPRRVHTVVVSVQHSEKIGLKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIVDTY 239 (364)
Q Consensus 161 -~~~~p~ri~tiviS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTY 239 (364)
+.++|+||+|||||+||++++++++|+++|+|+||+|++|.+|++++|+||||||||||+|||+|||||||||||||||
T Consensus 186 ~~~~~P~~i~tivvS~QH~~~v~~~~l~~~i~~~vi~~v~~~~~~~~~t~~~INPtGrFviGGP~gDtGLTGRKIiVDTY 265 (398)
T PTZ00104 186 RGGLTPKRVHTILISTQHDEGVSNEEIREDLMEHVIKPVIPAKLLDEETKYHLNPSGRFVIGGPHGDAGLTGRKIIVDTY 265 (398)
T ss_pred CCCccceeEEEEEEccccCCCCCHHHHHHHHHHHHHHHhcCcccCCCCcEEEECCCCCeEeCCCcccccccCceEEEEcC
Confidence 1148999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccccCCCCCccchhHhHHHHHHHHHHHHhcccCeeEEEEEEEecccceeeEEEEecCCCCC--cHHHHHHHH
Q psy10894 240 GGWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISITLFDYGTSSR--SHKELLSIV 317 (364)
Q Consensus 240 GG~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~cevqlsYAIGva~PvSi~VdtfgT~~~--~~~~i~~~v 317 (364)
|||++|||||||||||||||||||||||||||||||||||+|||||||||||+++||||+||||||+++ ++++|.++|
T Consensus 266 GG~a~HGGGAFSGKDptKVDRSaAY~ARyiAKniVAAGlA~~ceVQlsYAIGva~Pvsi~V~TfGT~~~~~~~~~i~~~v 345 (398)
T PTZ00104 266 GGWGAHGGGAFSGKDPSKVDRSAAYAARWIAKSLVAAGLCKRCLVQVSYAIGVAEPLSIHVNTYGTGKKGYDDEDLLEIV 345 (398)
T ss_pred CCccCCCCccccCCCcchhhhHHHHHHHHHHHHHHhhccccceEEEEEEEcccCCCceeEEecCCCcccCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHcCCCCHHHHHHHhccCCcchhhhccccCCCCC--CCCCCCCCCCCCC
Q psy10894 318 QRNFDLRPGKIVKDLNLRNPIYQQTSTYGHFGRD--IFPWEVPKPLVID 364 (364)
Q Consensus 318 ~~~Fdl~p~~Ii~~L~L~~piY~~ta~yGHFGr~--~fpWE~~d~~~~~ 364 (364)
+++|||||++||++|+|++|+|++||+||||||+ +||||+||+++++
T Consensus 346 ~~~Fdl~P~~II~~L~L~~PiY~~ta~yGHFGr~~~~f~WE~~d~~~~~ 394 (398)
T PTZ00104 346 QKNFDLRPGDIIKELDLRRPIFQKTASYGHFGRSDPEFTWEVPKDLEHE 394 (398)
T ss_pred HHHcCCCHHHHHHHhCCCChhhhhhhccCccCCCCCCCCccccchhccc
Confidence 9999999999999999999999999999999998 4999999999875
No 6
>PRK05250 S-adenosylmethionine synthetase; Validated
Probab=100.00 E-value=7e-174 Score=1274.57 Aligned_cols=357 Identities=58% Similarity=0.965 Sum_probs=349.0
Q ss_pred CchhhhhHHHHHHhccCCCCcEEEEEEeecCeEEEEEEEeecccccHHHHHHHHHhhcCCCCCCCCCcCCceEEEEeecc
Q psy10894 1 MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGYDDSSKGFDYKTCSVMLCLDE 80 (364)
Q Consensus 1 icDqISDaILDa~L~~Dp~arVA~Et~v~~~~v~v~GEitt~a~vd~~~ivR~~i~~IGY~~~~~gfd~~~c~V~~~i~~ 80 (364)
|||||||||||+||+|||+|||||||++++|+|+|+|||+|+++||++++||++|++|||+++++|||+++|.|+++|++
T Consensus 18 icDqISDaILD~~L~~Dp~srVA~Et~v~~~~V~i~GEitt~a~vD~~~ivR~~i~~IGY~~~~~gfd~~~~~v~~~i~~ 97 (384)
T PRK05250 18 IADQISDAILDAILAQDPNARVACETLVTTGLVVVAGEITTSAYVDIEEIVRETIKEIGYTSSEYGFDANTCAVLVSIGE 97 (384)
T ss_pred HHHHHHHHHHHHHHhhCCCCcEEEEEEeecCeEEEEEEEeCCccCCHHHHHHHHHHHcCCCCcccCcCCCceEEEeecCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhhhcccCCCCCCCCCCCCcceeEEeecCCCCCCCchHHHHHHHHHHHHHHHHHcCCCceecCCCceeEEEEEeecC
Q psy10894 81 QSPDIAAGVHINRDRDDVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEYCFAR 160 (364)
Q Consensus 81 QS~dIa~gV~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~~~~~~l~pD~KtQVtv~Y~~~~ 160 (364)
|||||+|||+..+ .+++|||||||||||||||||+|||||++|||+|++||+++||+|.+|||||||||||||+|++
T Consensus 98 QSpdIa~gV~~~~-~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~l~~~l~~~Rk~~~~~~l~PD~KtQVtv~Y~~-- 174 (384)
T PRK05250 98 QSPDIAQGVDRDE-LDEIGAGDQGIMFGYACNETPELMPLPITLAHRLVRRLAEVRKSGTLPYLRPDAKSQVTVEYEN-- 174 (384)
T ss_pred CChhHHhhhCccc-cccCCCCCceeeeeeecCCCcccCChHHHHHHHHHHHHHHHHhcCCCCeecCCCceEEEEEEEC--
Confidence 9999999998633 3579999999999999999999999999999999999999999999999999999999999973
Q ss_pred CccceeeEEEEEEEeeeCCCCCHHHHHHHHHHHHhhhhcCCCCCCCCcEEEEcCCCCeEeccCCCCcccCCceeEEecCC
Q psy10894 161 GACVPRRVHTVVVSVQHSEKIGLKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIVDTYG 240 (364)
Q Consensus 161 ~~~~p~ri~tiviS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYG 240 (364)
+ +|+||++||||+||++++++++|+++|+|+||+|++|++|++++|+||||||||||+|||+||||||||||||||||
T Consensus 175 ~--~p~~i~tiviS~QH~~~~~~~~l~~~i~e~vi~~v~~~~~~~~~t~~~INPtG~FviGGP~gDtGLTGRKIiVDTYG 252 (384)
T PRK05250 175 G--KPVRIDTIVVSTQHDPDVSQEQLREDVIEEVIKPVLPAELLDEDTKFLINPTGRFVIGGPQGDAGLTGRKIIVDTYG 252 (384)
T ss_pred C--ceeeEEEEEEeccCCCCCCHHHHHHHHHHHHhHHhcccccCCCCeEEEECCCCCeEeCCCcccccccCceEEEEcCC
Confidence 4 79999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccccCCCCCccchhHhHHHHHHHHHHHHhcccCeeEEEEEEEecccceeeEEEEecCCCCCcHHHHHHHHHHc
Q psy10894 241 GWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISITLFDYGTSSRSHKELLSIVQRN 320 (364)
Q Consensus 241 G~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~cevqlsYAIGva~PvSi~VdtfgT~~~~~~~i~~~v~~~ 320 (364)
||++|||||||||||||||||||||||||||||||||||+|||||||||||+++||||+||||||+++++++|.++|+++
T Consensus 253 G~a~hGGGAFSGKDptKVDRSaAY~AR~iAKniVaaglA~~ceVQlsYAIGva~Pvsi~VdtfGt~~~~~~~i~~~v~~~ 332 (384)
T PRK05250 253 GYARHGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLADRCEVQLSYAIGVAEPVSIYVDTFGTGKVSDEKIEEAVREV 332 (384)
T ss_pred cccccCCccccCCCcchhhhHHHHHHHHHHHHHHhhcCCCceEEEEEEeeccccCceEEEecCCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhccCCcchhhhccccCCCCCC--CCCCCCCCCC
Q psy10894 321 FDLRPGKIVKDLNLRNPIYQQTSTYGHFGRDI--FPWEVPKPLV 362 (364)
Q Consensus 321 Fdl~p~~Ii~~L~L~~piY~~ta~yGHFGr~~--fpWE~~d~~~ 362 (364)
|||||++||++|+|++|||++||+||||||++ |||||+|+++
T Consensus 333 Fdl~P~~Ii~~L~L~~piY~~ta~yGHFGr~~~~fpWE~~d~v~ 376 (384)
T PRK05250 333 FDLRPAGIIKMLDLRRPIYRKTAAYGHFGREDLDFPWEKTDKVE 376 (384)
T ss_pred cCCCHHHHHHHhCCCCccchhhcccCCCCCCCCCCCCcccchHH
Confidence 99999999999999999999999999999985 9999999764
No 7
>KOG1506|consensus
Probab=100.00 E-value=2.9e-167 Score=1187.44 Aligned_cols=363 Identities=77% Similarity=1.258 Sum_probs=359.6
Q ss_pred CchhhhhHHHHHHhccCCCCcEEEEEEeecCeEEEEEEEeecccccHHHHHHHHHhhcCCCCCCCCCcCCceEEEEeecc
Q psy10894 1 MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGYDDSSKGFDYKTCSVMLCLDE 80 (364)
Q Consensus 1 icDqISDaILDa~L~~Dp~arVA~Et~v~~~~v~v~GEitt~a~vd~~~ivR~~i~~IGY~~~~~gfd~~~c~V~~~i~~ 80 (364)
+|||||||||||||+|||+|+|||||..++|+|+++|||||+|.|||+++||++++.|||+++..|||++||+|+++|++
T Consensus 21 mCDQISDAiLDAhLkqDP~aKVACETv~KTgMiml~GEITska~vDYqkvVR~tik~IGyddsskGfD~ktcnvLvaieQ 100 (383)
T KOG1506|consen 21 MCDQISDAILDAHLKQDPNAKVACETVTKTGMIMLCGEITSKAVVDYQKVVRDTIKKIGYDDSSKGFDYKTCNVLVAIEQ 100 (383)
T ss_pred HHHHHHHHHHHHHhhcCCCceeeeeeccccceEEEeeeccchhhhhHHHHHHHHHHHhCCcccccCccccccceeeeecc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhhhhcccCCCCCCCCCCCCcceeEEeecCCCCCCCchHHHHHHHHHHHHHHHHHcCCCceecCCCceeEEEEEeecC
Q psy10894 81 QSPDIAAGVHINRDRDDVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEYCFAR 160 (364)
Q Consensus 81 QS~dIa~gV~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~~~~~~l~pD~KtQVtv~Y~~~~ 160 (364)
|||||||||+-+++.+++||||||||||||||||||.|||++.|||+|..+|+++|++|++||||||+|||||++|.+++
T Consensus 101 QSPdIAqgvH~~k~~edvGAGDQgimfGYATdet~e~mplt~~lahkln~~l~~~rr~g~l~WlRpdsktqVTvey~~~~ 180 (383)
T KOG1506|consen 101 QSPDIAQGVHVDKDEEDVGAGDQGIMFGYATDETPECMPLTIVLAHKLNAKLAELRRNGTLPWLRPDSKTQVTVEYMNDN 180 (383)
T ss_pred cCchhhhcccccCCHhHcCCCcceeEeeeecCCCccccchHHHHHHHHHHHHHhhcccCcccccccCCcceEEEEEecCC
Confidence 99999999998877889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccceeeEEEEEEEeeeCCCCCHHHHHHHHHHHHhhhhcCCCCCCCCcEEEEcCCCCeEeccCCCCcccCCceeEEecCC
Q psy10894 161 GACVPRRVHTVVVSVQHSEKIGLKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIVDTYG 240 (364)
Q Consensus 161 ~~~~p~ri~tiviS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYG 240 (364)
|++.|.||||||||+||++++++++||++++|+||++|+|++++|++|.|||||+||||||||+||+|||||||||||||
T Consensus 181 Ga~vP~rVhtvviS~QH~~~is~~~lr~~l~e~vik~viPa~~lDe~Tiyhl~PsGrFviGGP~GDAGlTGRKIIvDtYG 260 (383)
T KOG1506|consen 181 GAMVPLRVHTVVISTQHSEDITLDDLRAELKEKVIKPVIPAKYLDEKTIYHLNPSGRFVIGGPQGDAGLTGRKIIVDTYG 260 (383)
T ss_pred CceeeeEEEEEEEecccCccccHHHHHHHHHHhhhhhcCcHhhcCccceEEecCCccEEecCCCcccccccceEEEeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccccCCCCCccchhHhHHHHHHHHHHHHhcccCeeEEEEEEEecccceeeEEEEecCCCCCcHHHHHHHHHHc
Q psy10894 241 GWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISITLFDYGTSSRSHKELLSIVQRN 320 (364)
Q Consensus 241 G~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~cevqlsYAIGva~PvSi~VdtfgT~~~~~~~i~~~v~~~ 320 (364)
||++||||||||||||||||||||+|||+||++|+||||+||+||+|||||+++|+||+|+||||+..++++|.++|++|
T Consensus 261 GwgahGGGAFSGKD~tKVDRSaAYaaRwvAkSlV~aGl~rR~lVQvSYAIGvaePlSv~v~~ygTs~~s~~ell~iv~~n 340 (383)
T KOG1506|consen 261 GWGAHGGGAFSGKDPTKVDRSAAYAARWVAKSLVAAGLCRRCLVQVSYAIGVAEPLSVFVFTYGTSTKSDKELLEIVKKN 340 (383)
T ss_pred cccccCCcccCCCCccccchHHHHHHHHHHHHHHHhhhhhheeeEEeeeecCCCceEEEEEeccCCCCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhccCCcchhhhccccCCCCCCCCCCCCCCCCC
Q psy10894 321 FDLRPGKIVKDLNLRNPIYQQTSTYGHFGRDIFPWEVPKPLVI 363 (364)
Q Consensus 321 Fdl~p~~Ii~~L~L~~piY~~ta~yGHFGr~~fpWE~~d~~~~ 363 (364)
|||||+.|+++|+|++|||++||+|||||+++||||+++++++
T Consensus 341 FDlrPG~ivk~LdLkrpiy~~Ta~yGHFg~~~f~WE~pk~Lk~ 383 (383)
T KOG1506|consen 341 FDLRPGMIVKNLDLKRPIYLKTAAYGHFGDQEFPWEVPKPLKI 383 (383)
T ss_pred cCCCCceEEeecccccccccccccccccCCCCCCccccccCCC
Confidence 9999999999999999999999999999999999999999875
No 8
>PF02773 S-AdoMet_synt_C: S-adenosylmethionine synthetase, C-terminal domain; InterPro: IPR022630 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the C-terminal domain of S=adenosylmethionine synthetase and is found in association with PF00438 from PFAM and PF02772 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3IML_B 1QM4_B 1O9T_B 1O93_A 1O92_B 1O90_A 1FUG_A 1RG9_D 1XRA_A 1P7L_C ....
Probab=100.00 E-value=2.3e-86 Score=576.84 Aligned_cols=138 Identities=67% Similarity=1.180 Sum_probs=122.5
Q ss_pred eccCCCCcccCCceeEEecCCCccccccccccCCCCCccchhHhHHHHHHHHHHHHhcccCeeEEEEEEEecccceeeEE
Q psy10894 220 LGGPQVDAGLTGRKIIVDTYGGWGAHGGGAFSGKDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISIT 299 (364)
Q Consensus 220 iGGP~~DtGLTGRKiiVDTYGG~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~cevqlsYAIGva~PvSi~ 299 (364)
||||+||||||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+
T Consensus 1 iGGp~~D~GlTGRKiivDtYGg~~~hGGGafSGKD~tKvDRsaaY~aR~iAKniVaagla~~c~vqlsYaIGv~~P~si~ 80 (138)
T PF02773_consen 1 IGGPQGDTGLTGRKIIVDTYGGWARHGGGAFSGKDPTKVDRSAAYMARYIAKNIVAAGLAKRCEVQLSYAIGVAEPVSIY 80 (138)
T ss_dssp S-TTTTSEEETTSSTTTTTTTTSSB-BS---TTB-TTSHHHHHHHHHHHHHHHHHHTTSBSEEEEEEEE-TT-SS-SEEE
T ss_pred CCCCccccccccceEEEecccCceecCCccccCCChhhhhccHHHHHHHHHHHHHHccchHHHHhhceeeeccccCcccE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCcHHHHHHHHHHcCCCCHHHHHHHhccCCcchhhhccccCCCCCCCCCCC
Q psy10894 300 LFDYGTSSRSHKELLSIVQRNFDLRPGKIVKDLNLRNPIYQQTSTYGHFGRDIFPWEV 357 (364)
Q Consensus 300 VdtfgT~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~piY~~ta~yGHFGr~~fpWE~ 357 (364)
||||||+++++++|.++|+++|||||++||++|+|++|||++||+||||||++|||||
T Consensus 81 v~tfgT~~~~d~~i~~~I~~~Fdl~P~~II~~L~L~~PiY~~TA~yGHFGr~~~~WE~ 138 (138)
T PF02773_consen 81 VDTFGTGKISDEEILEIIKENFDLRPAGIIKELDLRRPIYRKTAAYGHFGREDFPWEK 138 (138)
T ss_dssp EEETT-BSS-HHHHHHHHHHHS--SHHHHHHHCTTTSSTHGGGGSS-SSSSTTSGGG-
T ss_pred EEeCCCccchHHHHHHHHHHHhCCcHHHHHHHhCcCCchhHhhhCcCCCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999997
No 9
>PF02772 S-AdoMet_synt_M: S-adenosylmethionine synthetase, central domain; InterPro: IPR022629 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the central domain and is found in association with PF00438 from PFAM and PF02773 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3S82_B 2OBV_A 3RV2_A 1FUG_A 1RG9_D 1XRA_A 1P7L_C 1XRB_A 1MXA_A 1MXB_A ....
Probab=100.00 E-value=2.3e-57 Score=389.20 Aligned_cols=120 Identities=57% Similarity=0.949 Sum_probs=108.4
Q ss_pred CCCCCCCcceeEEeecCCCCCCCchHHHHHHHHHHHHHHHHHcCCCceecCCCceeEEEEEeecCCccceeeEEEEEEEe
Q psy10894 96 DDVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEYCFARGACVPRRVHTVVVSV 175 (364)
Q Consensus 96 ~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~~~~~~l~pD~KtQVtv~Y~~~~~~~~p~ri~tiviS~ 175 (364)
+++|||||||||||||||||+||||||+|||+|++||+++|++|.+|||||||||||||+|+++ + +|+||++||||+
T Consensus 1 d~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~R~~~~~~~l~PD~KsQVtveY~~~-~--~P~ri~tivvS~ 77 (120)
T PF02772_consen 1 DEIGAGDQGIMFGYACDETPELMPLPIVLAHRLARRLAEVRKNGELPWLRPDGKSQVTVEYDEN-G--KPVRIDTIVVST 77 (120)
T ss_dssp GCCSBSS-EEEEEEEETTSTTSS-HHHHHHHHHHHHHHHHHHTSSSTTEEEEEEEEEEEEEEET-T--EEEEEEEEEEEE
T ss_pred CCcCcCcceEEEeeEcCCCCccCChHHHHHHHHHHHHHHHHhcccCcccCCCcceeEEEeeccC-C--ceeeeeEEEEEe
Confidence 3689999999999999999999999999999999999999999999999999999999999654 5 899999999999
Q ss_pred eeCCCCCHHHHHHHHHHHHhhhhcCCCCCCCCcEEEEcCCCCe
Q psy10894 176 QHSEKIGLKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNF 218 (364)
Q Consensus 176 QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~F 218 (364)
||++++++++||++|+|+||+||+|+++++++|+|||||||||
T Consensus 78 QH~~~i~~~~ir~~i~e~Vi~~v~~~~~~~~~t~~~INPtGrF 120 (120)
T PF02772_consen 78 QHDEDISLEEIREDIKEKVIKPVIPEYLLDEDTKILINPTGRF 120 (120)
T ss_dssp EE-TTS-HHHHHHHHHHHTHHHHSHGGG-BTT-EEEESTTS--
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhcccccCCCCcEEEECCCCCC
Confidence 9999999999999999999999999999999999999999999
No 10
>PF00438 S-AdoMet_synt_N: S-adenosylmethionine synthetase, N-terminal domain; InterPro: IPR022628 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the N-terminal domain of S-adenosylmethionine synthetase and is found in association with PF02772 from PFAM and PF02773 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3RV2_A 3TDE_B 3S82_B 3IML_B 2P02_A 2OBV_A 1QM4_B 1O9T_B 1O93_A 1O92_B ....
Probab=100.00 E-value=2.4e-34 Score=240.22 Aligned_cols=83 Identities=66% Similarity=1.110 Sum_probs=78.2
Q ss_pred CchhhhhHHHHHHhccCCCCcEEEEEEeecCeEEEEEEEeecccccHHHHHHHHHhhcCCCCCCCCCcCCceEEEEeecc
Q psy10894 1 MCDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGYDDSSKGFDYKTCSVMLCLDE 80 (364)
Q Consensus 1 icDqISDaILDa~L~~Dp~arVA~Et~v~~~~v~v~GEitt~a~vd~~~ivR~~i~~IGY~~~~~gfd~~~c~V~~~i~~ 80 (364)
+||||||||||+||++||+|||||||++++|+|+|+|||+|++++|++++||++|++|||+++++|||+++|+|+++|++
T Consensus 18 icDqISDailD~~l~~dp~arVA~E~~~~~~~v~i~GEi~~~~~vd~~~ivR~~i~~IGY~~~~~gfd~~tc~V~~~i~~ 97 (100)
T PF00438_consen 18 ICDQISDAILDACLKQDPNARVACETLVSTGMVIIAGEITSRAYVDIEKIVREVIKDIGYDDSEYGFDYDTCEVLVAIHE 97 (100)
T ss_dssp HHHHHHHHHHHHHHHH-TT-EEEEEEEEETTEEEEEEEEESSHHHTHHHHHHHHHHHHT-EEGGGTEETTTSEEEEEEEE
T ss_pred hhceeeeccchHHHhcCCCCeEEEEEEeeccEEEEEEEeccchhhhHHHHHHHHHHHhCCCCccCCCCCCcceEEEeecc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCh
Q psy10894 81 QSP 83 (364)
Q Consensus 81 QS~ 83 (364)
|||
T Consensus 98 QSp 100 (100)
T PF00438_consen 98 QSP 100 (100)
T ss_dssp E-H
T ss_pred cCc
Confidence 998
No 11
>PRK04439 S-adenosylmethionine synthetase; Provisional
Probab=98.15 E-value=0.0003 Score=71.80 Aligned_cols=280 Identities=21% Similarity=0.219 Sum_probs=168.2
Q ss_pred CCCCcEEEEEEee--cC------eEEEEEEEeecc---cccHHHHHHHHHhhcCCCC-CCCCCcCCc-eEEEEeecccCh
Q psy10894 17 DPDAKVACETVTK--TG------MVLLCGEITSKA---VVDYQKVTRETIKHIGYDD-SSKGFDYKT-CSVMLCLDEQSP 83 (364)
Q Consensus 17 Dp~arVA~Et~v~--~~------~v~v~GEitt~a---~vd~~~ivR~~i~~IGY~~-~~~gfd~~~-c~V~~~i~~QS~ 83 (364)
|+---||-+..-+ .| .++++|..|+.. .+.+.+|+.++.++ |=. .--.+|.+. ..|...+.+-|+
T Consensus 62 DK~llvgG~s~p~fGGG~vi~Pi~ii~~GRAt~~~~g~~iPv~~Ia~~Aak~--~L~~~l~~lD~e~hv~i~~~i~~GS~ 139 (399)
T PRK04439 62 DKVLLVGGRSAPKFGGGEVIEPIYIILGGRATKEVGGEEIPVGEIAIEAAKE--YLRENLRNLDPERHVIIDVRLGPGST 139 (399)
T ss_pred chheEEccEEeccCCCceEEeeEEEEEecceeeeECCeEecHHHHHHHHHHH--HHHHhCccCCccccEEEEEeeCCCcH
Confidence 6666666665433 22 457889888764 38888887555544 111 112345544 567778889999
Q ss_pred hhhhcccCCCCCCCCCCCCcceeEEeecCCCCCCCchHHHHHHHHHHHHHHHHHc----CCCceecCCCceeEEEEEeec
Q psy10894 84 DIAAGVHINRDRDDVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKVADLRRS----GEFWWARPDTKTQVTCEYCFA 159 (364)
Q Consensus 84 dIa~gV~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~----~~~~~l~pD~KtQVtv~Y~~~ 159 (364)
|+..-..... .-.+|-|-....||| ||+- ..+|+..++..-.+ ..+|+.+.|-|.- -+++.
T Consensus 140 dL~~vF~r~~--~vp~ANDTS~gVGyA--------PlS~--~E~~Vl~~E~~lns~~~k~~~P~~GeDiKVM---G~R~g 204 (399)
T PRK04439 140 DLVDVFERES--IVPLANDTSFGVGYA--------PLSE--TERLVLETERYLNSEEFKKRFPEVGEDIKVM---GLRNG 204 (399)
T ss_pred HHHHHhCCCC--CccccccccceeecC--------CCCH--HHHHHHHHHHHhcCcchhhcCCCcCCCeEEE---EEEcC
Confidence 9986554321 134899999999997 4332 23344444333321 4689999999974 23322
Q ss_pred CCccceeeEEEEEEE----eeeCCCCC-HHHHHHHHHHHHhhhhcCCCCCCCCcEEEEcCCCCeEecc----------CC
Q psy10894 160 RGACVPRRVHTVVVS----VQHSEKIG-LKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGG----------PQ 224 (364)
Q Consensus 160 ~~~~~p~ri~tiviS----~QH~~~v~-~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~FviGG----------P~ 224 (364)
+. + ++.|. ..|-.+++ .-+.++.+++.|-.-+ +++.+.+..++||..-.--.|| =+
T Consensus 205 ~~----i---~lTVa~a~v~r~v~~~~~Y~~~k~~v~~~v~~~a--~~~~~~~v~v~iNt~D~~~~~~~YLTVtGTSAE~ 275 (399)
T PRK04439 205 DE----I---TLTIAMALVDRYVNDVDEYFEVKEEVKEKVEDLA--QKYTDRDVEVHINTADDPDEGGVYLTVTGTSAEM 275 (399)
T ss_pred CE----E---EEEEEhHHhhhhcCCHHHHHHHHHHHHHHHHHHH--HhhCCCceEEEEeCCCCCCCCcEEEEeceeehhc
Confidence 21 2 22222 23333333 2355666666655433 3455567899999966522222 26
Q ss_pred CCcccCCceeEEecC-CCccccccccccCCCC-CccchhHhHHHHHHHHHHHHh-cccCeeEEEEEEEeccc--ceeeEE
Q psy10894 225 VDAGLTGRKIIVDTY-GGWGAHGGGAFSGKDF-TKVDRSAAYAARWVAKSLVKA-GLCRRCLVQVSYAIGVA--EPISIT 299 (364)
Q Consensus 225 ~DtGLTGRKiiVDTY-GG~~~HGGGAfSGKDp-tKVDRSaAY~AR~iAKniVaa-GlA~~cevqlsYAIGva--~PvSi~ 299 (364)
||.|.+||=.=|--- =++-|-+==|-+||.| +-|=.-=..+|..||+.|+++ .=.++|.|.|---||.| +|..+.
T Consensus 276 GDdG~VGRGNRvNGLITp~RPMSmEAaAGKNPv~HVGKIYNvlA~~iA~~i~~~v~gv~ev~V~llSqIG~PId~P~~a~ 355 (399)
T PRK04439 276 GDDGSVGRGNRVNGLITPNRPMSMEAAAGKNPVNHVGKIYNVLANRIAREIYEEVEGVKEVYVRLLSQIGKPIDEPLVAS 355 (399)
T ss_pred cCCcccCcCcccCcccCCCCCccccccCCCCCcccchHHHHHHHHHHHHHHHHhcCCceEEEEEEeccCCCcCCCCeEEE
Confidence 999999994422100 0112333457899998 446666678899999999985 22679999998899987 788887
Q ss_pred EEecCCCCCcH----HHHHHHHHHcCC
Q psy10894 300 LFDYGTSSRSH----KELLSIVQRNFD 322 (364)
Q Consensus 300 VdtfgT~~~~~----~~i~~~v~~~Fd 322 (364)
+...-....+- +++++++.+.++
T Consensus 356 v~v~~~~g~~~~~~~~~v~~I~~~~L~ 382 (399)
T PRK04439 356 IQVIPEDGVLISDVEKEVEEIVDEELA 382 (399)
T ss_pred EEEecCCCCChHHHHHHHHHHHHHHHh
Confidence 77653222332 345555554443
No 12
>PF01941 AdoMet_Synthase: S-adenosylmethionine synthetase (AdoMet synthetase); InterPro: IPR002795 A highly diverged class of S-adenosylmethionine synthetases have been identified in the archaea. S-adenosylmethionine is the primary alkylating agent in all known organisms. ATP:L-methionine S-adenosyltransferase (MAT) catalyses the only known biosynthetic route to this central metabolite. Although the amino acid sequence of MAT is strongly conserved among bacteria and eukarya (see IPR002133 from INTERPRO) no homologues had been recognised in the completed genome sequences of any archaea. The identification of a second major class of MAT emphasises the long evolutionary history of the archaeal lineage and the structural diversity found even in crucial metabolic enzymes []. Three bacterial genomes encode both the archaeal and eukaryotic/bacterial types of MAT [].; GO: 0004478 methionine adenosyltransferase activity, 0005524 ATP binding, 0006730 one-carbon metabolic process
Probab=98.14 E-value=0.00037 Score=71.07 Aligned_cols=281 Identities=20% Similarity=0.166 Sum_probs=171.5
Q ss_pred CCCCcEEEEEEee--------cCeEEEEEEEeecc---cccHHHHHHHHHhhcCCCC-CCCCCcCCc-eEEEEeecccCh
Q psy10894 17 DPDAKVACETVTK--------TGMVLLCGEITSKA---VVDYQKVTRETIKHIGYDD-SSKGFDYKT-CSVMLCLDEQSP 83 (364)
Q Consensus 17 Dp~arVA~Et~v~--------~~~v~v~GEitt~a---~vd~~~ivR~~i~~IGY~~-~~~gfd~~~-c~V~~~i~~QS~ 83 (364)
|+---||-++.-+ .=.|+++|..|+.. ++++.+|+.++.++ |=. .--.+|.+. ..|...+.+-|+
T Consensus 62 DK~llvgG~s~p~fGGG~vi~Pi~ii~~GRAt~~~~~~~iPv~~Ia~~aak~--~l~~~l~~lD~e~hv~i~~~i~~GS~ 139 (396)
T PF01941_consen 62 DKVLLVGGRSEPKFGGGEVIEPIYIILGGRATKEVGGEKIPVDEIAIEAAKE--WLRENLRFLDPERHVIIDCRIGPGSP 139 (396)
T ss_pred ccceEEccEEeccCCCceeeeeEEEEEecceeeccCCeeccHHHHHHHHHHH--HHHHhcccCCccccEEEEEeeCCCCh
Confidence 6666666655433 23578999988864 67888887666554 211 122355553 677788899999
Q ss_pred hhhhcccCCCCCCCCCCCCcceeEEeecCCCCCCCchHHHHHHHHHHHHHHHHHc----CCCceecCCCceeEEEEEeec
Q psy10894 84 DIAAGVHINRDRDDVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKVADLRRS----GEFWWARPDTKTQVTCEYCFA 159 (364)
Q Consensus 84 dIa~gV~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~----~~~~~l~pD~KtQVtv~Y~~~ 159 (364)
|+..-...... -.+|-|-....||| ||+ -..+|+..++..-.+ ..+|+.+.|-|.-- +++.
T Consensus 140 dL~dvf~r~~~--vp~ANDTS~gVGyA--------PlS--~~E~~Vl~~Er~lns~~fk~~~p~~GeDiKVMG---~R~g 204 (396)
T PF01941_consen 140 DLVDVFERGKK--VPLANDTSFGVGYA--------PLS--ETEKLVLETERYLNSPEFKKKFPEVGEDIKVMG---LREG 204 (396)
T ss_pred HHHHHhccccc--ccccCCccceeccC--------Ccc--HHHHHHHHHHHHhccccccccCCCcCCCeEEEE---EEeC
Confidence 99877665321 35899999999997 332 233444444433222 35899999999743 3322
Q ss_pred CCccceeeE--EEEEEEeeeCCCCC-HHHHHHHHHHHHhhhhcCCCCCCCCcEEEEcCCCCeEeccC----------CCC
Q psy10894 160 RGACVPRRV--HTVVVSVQHSEKIG-LKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGP----------QVD 226 (364)
Q Consensus 160 ~~~~~p~ri--~tiviS~QH~~~v~-~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~FviGGP----------~~D 226 (364)
+. +.+ -.-.+| .|-.+.+ .-+.++.+++.+-. .+.+. .+.+..++||..-.--.||+ +||
T Consensus 205 ~~----i~LTvA~a~v~-r~v~~~~~Y~~~k~~v~~~v~~-~a~~~-~~~~v~v~iNt~D~~~~~~~YLTvtGTSAE~GD 277 (396)
T PF01941_consen 205 DK----ITLTVAMAFVD-RYVSSLDEYFERKEEVKEEVED-YAAKY-TDRDVEVHINTADDPEEGGVYLTVTGTSAEMGD 277 (396)
T ss_pred CE----EEEEEEhhhhh-hhcCCHHHHHHHHHHHHHHHHH-HHHHh-cCCceEEEEECCCCCCCCcEEEEeceeeccccC
Confidence 11 221 111111 2233222 12455555555443 33332 36677999998774333333 699
Q ss_pred cccCCceeEEecC-CCccccccccccCCCC-CccchhHhHHHHHHHHHHHHh-cccCeeEEEEEEEeccc--ceeeEEEE
Q psy10894 227 AGLTGRKIIVDTY-GGWGAHGGGAFSGKDF-TKVDRSAAYAARWVAKSLVKA-GLCRRCLVQVSYAIGVA--EPISITLF 301 (364)
Q Consensus 227 tGLTGRKiiVDTY-GG~~~HGGGAfSGKDp-tKVDRSaAY~AR~iAKniVaa-GlA~~cevqlsYAIGva--~PvSi~Vd 301 (364)
.|.+||=.=|--- =++-|-+==|-+||.| +-|=.-=..+|..+|+.|++. .=.++|.|.|---||.| +|..+.|.
T Consensus 278 dG~VGRGNRvNGLITp~RPMSmEAaAGKNPv~HVGKIYNvlA~~iA~~I~~~v~gv~ev~V~llSqIG~PId~P~~~~v~ 357 (396)
T PF01941_consen 278 DGSVGRGNRVNGLITPNRPMSMEAAAGKNPVNHVGKIYNVLANEIAQRIYEEVDGVEEVYVRLLSQIGKPIDEPQIASVQ 357 (396)
T ss_pred CcccCcccccccccCCCCCCcccccCCCCCcchhhHHHHHHHHHHHHHHHHhcCCcceEEEEEccccCCCCCCCeEEEEE
Confidence 9999995432110 0122444568899999 456666678899999999984 23568999988889976 78888887
Q ss_pred ecCCCCCc----HHHHHHHHHHcC
Q psy10894 302 DYGTSSRS----HKELLSIVQRNF 321 (364)
Q Consensus 302 tfgT~~~~----~~~i~~~v~~~F 321 (364)
......+. .+++++++.+.+
T Consensus 358 i~~~~~~~~~~~~~~v~~Ii~~~L 381 (396)
T PF01941_consen 358 IIPEDGVLLEDVEKEVEEIIDEEL 381 (396)
T ss_pred EecCCCCchHHHHHHHHHHHHHHH
Confidence 76554432 345555555443
No 13
>COG1812 MetK Archaeal S-adenosylmethionine synthetase [Amino acid transport and metabolism]
Probab=94.55 E-value=1.9 Score=44.29 Aligned_cols=250 Identities=20% Similarity=0.208 Sum_probs=144.0
Q ss_pred eEEEEEEEeec---ccccHHHHHHHHHhhcCCCC-CCCCCcCCce-EEEEeecccChhhhhcccCCCCCCCCCCCCccee
Q psy10894 32 MVLLCGEITSK---AVVDYQKVTRETIKHIGYDD-SSKGFDYKTC-SVMLCLDEQSPDIAAGVHINRDRDDVGAGDQGLM 106 (364)
Q Consensus 32 ~v~v~GEitt~---a~vd~~~ivR~~i~~IGY~~-~~~gfd~~~c-~V~~~i~~QS~dIa~gV~~~~~~~~~GAGDQGim 106 (364)
.+++.|.-|.. -.+++..|+-++-++ |=. .---+|.+++ -+-..|.+-|.|+..-.....+ +-..|-|...+
T Consensus 85 yIll~GRAt~~~~g~~ip~~~ia~~AAk~--yLr~~~r~LD~E~~Viid~rig~GS~dL~dvf~~~~~-~VplANDTSfg 161 (400)
T COG1812 85 YILLSGRATKEVEGVEIPVGSIAIKAAKE--YLRENLRNLDVENHVIIDVRIGQGSVDLVDVFERAKE-EVPLANDTSFG 161 (400)
T ss_pred EEEEecceeeeecCeeccchHHHHHHHHH--HHHhhcccCCccccEEEEeeccCCchhHHHHHhhccc-CCcccccccce
Confidence 46677776643 346666665444433 111 1123566654 4556788889998765544321 23589999999
Q ss_pred EEeecCCCCCCCchHHHHHHHHHHHHHHH----HHcCCCceecCCCceeEEEEEeecCCccceeeEEEEEEEeeeCCCCC
Q psy10894 107 FGYATDETEECMPLTVVLAHKLNQKVADL----RRSGEFWWARPDTKTQVTCEYCFARGACVPRRVHTVVVSVQHSEKIG 182 (364)
Q Consensus 107 fGYA~~ET~~~MPl~i~lAh~L~~~l~~~----Rk~~~~~~l~pD~KtQVtv~Y~~~~~~~~p~ri~tiviS~QH~~~v~ 182 (364)
.||| ||+. ..+|+...+.. --...+|..+.|-|.-. ++ +++. .-.+|.+-++|-. -++++
T Consensus 162 VG~A--------PLs~--tErlV~etEr~lns~~~k~~~P~vGeDIKVMg-lR--~~~~--i~LTIa~a~V~~~-v~~~~ 225 (400)
T COG1812 162 VGFA--------PLSE--TERLVLETERYLNSPEFKKKLPAVGEDIKVMG-LR--EGDE--ISLTIAAALVDKY-VEDID 225 (400)
T ss_pred eccC--------CCcH--HHHHHHHHHHHhcChhhcccCCCcCCceEEEE-Ee--cCCe--EEEEEehHHHHHh-hcCHH
Confidence 9997 4433 23333333322 22356899999999854 33 2121 2245555555533 44433
Q ss_pred H-HHHHHHHHHHHhhhhcCCCCCCCCcEEEEcCCCCeEec----------cCCCCcccCCceeEEecC-CCccccccccc
Q psy10894 183 L-KELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILG----------GPQVDAGLTGRKIIVDTY-GGWGAHGGGAF 250 (364)
Q Consensus 183 ~-~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~FviG----------GP~~DtGLTGRKiiVDTY-GG~~~HGGGAf 250 (364)
. -++++.++++|-+-. ++.-+.+-+.+||-+-...-| --+||.|.+||=.=|--- =.+-|-.==|-
T Consensus 226 ~Y~~~ke~v~~~VedlA--~~it~~~v~v~iNtaD~~e~~~~YlTvTGTSaE~GDdGsVGRGNR~nGLITp~RpmSmEAa 303 (400)
T COG1812 226 EYIEVKEEVRKHVEDLA--SEITDREVEVYINTADDPERGSVYLTVTGTSAEQGDDGSVGRGNRVNGLITPNRPMSMEAA 303 (400)
T ss_pred HHHHHHHHHHHHHHHHH--hhhhccceEEEEecccccccCeEEEEeccchhhhCCCcccccccccccccCCCCCcccccc
Confidence 2 245555655554322 222244557778875544333 247999999995422100 01123334588
Q ss_pred cCCCCC-ccchhHhHHHHHHHHHHHHhc-ccCeeEEEEEEEeccc--ce--eeEEEEe
Q psy10894 251 SGKDFT-KVDRSAAYAARWVAKSLVKAG-LCRRCLVQVSYAIGVA--EP--ISITLFD 302 (364)
Q Consensus 251 SGKDpt-KVDRSaAY~AR~iAKniVaaG-lA~~cevqlsYAIGva--~P--vSi~Vdt 302 (364)
|||.|. -|=.-=.-.|-.||+.|+.+= =.++|.|+|-=-||.| +| .++.|-+
T Consensus 304 aGKNPvnHVGKiYN~La~~iA~~I~~ev~~v~evyv~ilsqIGkPId~P~~~~vqvi~ 361 (400)
T COG1812 304 AGKNPVNHVGKIYNVLANQIANEIVEEVPGVEEVYVRILSQIGKPIDEPKVASVQVIT 361 (400)
T ss_pred cCCCchhhhHHHHHHHHHHHHHHHHHhcCCcceEEEehhhhcCCcCCCCceEEEEEEe
Confidence 999995 355555667888888888763 2688999888889975 44 5566665
No 14
>COG1325 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=72.47 E-value=4.6 Score=36.86 Aligned_cols=51 Identities=22% Similarity=0.335 Sum_probs=38.9
Q ss_pred eEEEEEEEecccceeeEEEEecCCCCCcHHHHHHHHHHcCCCCHHHHHHHhccCCcchhhhccccCCCCC
Q psy10894 282 CLVQVSYAIGVAEPISITLFDYGTSSRSHKELLSIVQRNFDLRPGKIVKDLNLRNPIYQQTSTYGHFGRD 351 (364)
Q Consensus 282 cevqlsYAIGva~PvSi~VdtfgT~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~piY~~ta~yGHFGr~ 351 (364)
|.+|..| +++.|-.+.| -++++..++++..|+..+ + --...+.+-||||+|
T Consensus 3 ~~~~~~~-------i~~rv~iHaT--ED~~kV~eAL~~~~p~~~-------~---~e~ev~~aeGhyGNp 53 (149)
T COG1325 3 GMMQSHY-------IEIRVIIHAT--EDEEKVLEALENFFPEAI-------D---VEIEVTEAEGHYGNP 53 (149)
T ss_pred Cccccce-------EEEEEEEEcc--CCHHHHHHHHHHhcCccc-------c---cceEEEEeecccCCe
Confidence 6677777 4677777777 577899999999998876 1 125567889999997
No 15
>TIGR00590 pcna proliferating cell nuclear antigen (pcna). All proteins in this family for which functions are known form sliding DNA clamps that are used in DNA replication processes. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=52.74 E-value=1.9e+02 Score=27.80 Aligned_cols=38 Identities=11% Similarity=0.174 Sum_probs=31.1
Q ss_pred hHhHHHHHHHHHHHHhcccCeeEEEEEEEecccceeeEEEEe
Q psy10894 261 SAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISITLFD 302 (364)
Q Consensus 261 SaAY~AR~iAKniVaaGlA~~cevqlsYAIGva~PvSi~Vdt 302 (364)
++.|..||+-+-.-|+++|+++++. +|...|+.+.-+-
T Consensus 204 ~~~y~l~YL~~~~Ka~~ls~~V~l~----~~~~~Pl~l~y~i 241 (259)
T TIGR00590 204 TLTFAIKYLNLFTKATPLSDRVTLS----MSNDVPLVVEYKI 241 (259)
T ss_pred eeeeeHHHHHHhhhhccCCCeEEEE----EcCCCCEEEEEEe
Confidence 4789999998777788999987764 6788999988773
No 16
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=45.05 E-value=36 Score=30.20 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=32.5
Q ss_pred hhhhhHHHHHHhccCCCCcEEEEEEeecCeEEEEEEEeec
Q psy10894 3 DQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSK 42 (364)
Q Consensus 3 DqISDaILDa~L~~Dp~arVA~Et~v~~~~v~v~GEitt~ 42 (364)
.+|+|+|+.++-++...+.- +.|-+.+|.|.+.|.+.+.
T Consensus 25 ~~~~~~i~~~i~~~~~~~~~-i~V~v~~G~v~l~G~v~s~ 63 (147)
T PRK11198 25 EDAADALKEHISKQGLGDAD-VNVQVEDGKATVSGDAASQ 63 (147)
T ss_pred HHHHHHHHHHHHhcCCCcCC-ceEEEeCCEEEEEEEeCCH
Confidence 57999999999888765554 6788899999999998874
No 17
>PF02980 FokI_C: Restriction endonuclease FokI, catalytic domain; InterPro: IPR004233 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. Thie entry represents the type IIS restriction endonuclease FokI (3.1.21.4 from EC), which is a member of an unusual class of bipartite restriction enzymes that recognise a specific DNA sequence and cleave DNA nonspecifically a short distance away from that sequence []. FokI contains amino- and carboxy-terminal domains corresponding to the DNA-recognition (IPR004234 from INTERPRO) and cleavage functions, respectively. The catalytic domain contains only a single catalytic centre, raising the question of how monomeric FokI manages to cleave both DNA strands. The catalytic domain is sequestered in a 'piggyback' fashion by the recognition domain [].; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system; PDB: 1FOK_A 2FOK_B.
Probab=43.27 E-value=22 Score=32.29 Aligned_cols=37 Identities=24% Similarity=0.252 Sum_probs=27.5
Q ss_pred cchhHhHHHHHHHHHHHHhcccCeeEEEEEEEecccc
Q psy10894 258 VDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAE 294 (364)
Q Consensus 258 VDRSaAY~AR~iAKniVaaGlA~~cevqlsYAIGva~ 294 (364)
++=++==+|||||.-|+..||+.+-...+.+-+|..+
T Consensus 77 ~EgTSDKYaR~I~~wL~k~glv~~~~k~vt~~~~~~~ 113 (142)
T PF02980_consen 77 WEGTSDKYARMICGWLKKVGLVEQKTKKVTRTIGGRK 113 (142)
T ss_dssp ---HHHHHHHHHHHHHHHTTSEEE--EEEE-BTTBTT
T ss_pred cccchHHHHHHHHHHHHHhchheecceEEEeeccCcc
Confidence 4556777899999999999999999999888777665
No 18
>PRK14031 glutamate dehydrogenase; Provisional
Probab=43.24 E-value=37 Score=35.84 Aligned_cols=104 Identities=22% Similarity=0.334 Sum_probs=67.6
Q ss_pred CCCCHHHHHHHHHHHHhhhhcCCCCC-CCCcEEEEcCCC-----------CeE------ec----cCCCCcccCCcee--
Q psy10894 179 EKIGLKELRAEVMSKVIKAVIPADYL-DENTIVHINPCG-----------NFI------LG----GPQVDAGLTGRKI-- 234 (364)
Q Consensus 179 ~~v~~~~l~~~i~e~Vi~~v~~~~~~-~~~t~~~INPtG-----------~Fv------iG----GP~~DtGLTGRKi-- 234 (364)
+++++++++..-....+|-.+-.-.+ --+.-+.+||.+ +|+ || =|..|-|.+.|-+
T Consensus 95 p~v~~~~v~aLa~~MT~K~Al~~lP~GGgKggi~~dP~~~s~~Eler~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~ 174 (444)
T PRK14031 95 ASVNLGILKFLAFEQTFKNSLTTLPMGGGKGGSDFSPRGKSNAEVMRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGF 174 (444)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCCCCceeeeeCCCCCCCHHHHHHHHHHHHHHHHhccCCCCccCccccCCCHHHHHH
Confidence 58888888877677777766632111 234566677754 232 21 1667899888865
Q ss_pred EEecCCCccccccccccCCCCCc---cc------hhHhHHHHHHHHHHHHhcc--c-CeeEEE
Q psy10894 235 IVDTYGGWGAHGGGAFSGKDFTK---VD------RSAAYAARWVAKSLVKAGL--C-RRCLVQ 285 (364)
Q Consensus 235 iVDTYGG~~~HGGGAfSGKDptK---VD------RSaAY~AR~iAKniVaaGl--A-~~cevq 285 (364)
|.|+|.-...|-.|.+-||..+. -+ |..+|.+|..+|.. |+ . ++|-||
T Consensus 175 i~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~~~~~~~~~~---g~~l~g~rVaVQ 234 (444)
T PRK14031 175 MFGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIYFLMEMLKTK---GTDLKGKVCLVS 234 (444)
T ss_pred HHHHHHhhcCCcceEECCCccccCCCCCCCcccHHHHHHHHHHHHHhc---CCCcCCCEEEEE
Confidence 78999887777788888876542 23 45678888888876 43 2 456555
No 19
>PF14084 DUF4264: Protein of unknown function (DUF4264)
Probab=42.89 E-value=6.5 Score=30.08 Aligned_cols=39 Identities=36% Similarity=0.482 Sum_probs=27.5
Q ss_pred ccChhhhhcccCCCCCCCCCCCCcceeEEeecCCCCCCCchHH
Q psy10894 80 EQSPDIAAGVHINRDRDDVGAGDQGLMFGYATDETEECMPLTV 122 (364)
Q Consensus 80 ~QS~dIa~gV~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i 122 (364)
+.++|+-.-||.-+. ---|+++|||.+-||-++=|-++|
T Consensus 11 ~~~~dlYKvVDfLNk----tLK~~~lmFGLs~d~~~~k~vitI 49 (52)
T PF14084_consen 11 EYNDDLYKVVDFLNK----TLKDKNLMFGLSKDEKEEKMVITI 49 (52)
T ss_pred cCCccHHHHHHHHhh----hhhhccEEEEEeecCcCCEEEEEE
Confidence 557788888875322 344899999999987777665443
No 20
>PRK11023 outer membrane lipoprotein; Provisional
Probab=41.40 E-value=42 Score=31.02 Aligned_cols=37 Identities=24% Similarity=0.330 Sum_probs=30.4
Q ss_pred hhhHHHHHHhccCCCCcEEEEEEeecCeEEEEEEEee
Q psy10894 5 ISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITS 41 (364)
Q Consensus 5 ISDaILDa~L~~Dp~arVA~Et~v~~~~v~v~GEitt 41 (364)
|+..|-.+++..+.-.-..+++-+.+|.|++.|+++.
T Consensus 128 It~kik~~L~~~~~v~~~~I~V~t~~G~V~L~G~v~~ 164 (191)
T PRK11023 128 ITTKVRSQLLTSDSVKSSNVKVTTENGEVFLLGLVTQ 164 (191)
T ss_pred HHHHHHHHHhcCCCCCcceEEEEEECcEEEEEEEeCH
Confidence 6778888888877666667888888999999999964
No 21
>PF04208 MtrA: Tetrahydromethanopterin S-methyltransferase, subunit A ; InterPro: IPR013340 This domain is mostly found in N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit A (MtrA) in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. 5-methyl-5,6,7,8-tetrahydromethanopterin + 2-mercaptoethanesulphonate = 5,6,7,8-tetrahydromethanopterin + 2-(methylthio)ethanesulphonate. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the N-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism. ; GO: 0008168 methyltransferase activity, 0030269 tetrahydromethanopterin S-methyltransferase activity
Probab=38.90 E-value=39 Score=31.72 Aligned_cols=41 Identities=22% Similarity=0.335 Sum_probs=32.8
Q ss_pred cCCCCcEEEEEEeecCe-------EEEEEEEeecccccHHHHHHHHHhh
Q psy10894 16 QDPDAKVACETVTKTGM-------VLLCGEITSKAVVDYQKVTRETIKH 57 (364)
Q Consensus 16 ~Dp~arVA~Et~v~~~~-------v~v~GEitt~a~vd~~~ivR~~i~~ 57 (364)
-||+|+||+=||.++.. .-|+|-..|. ++=+++++++++.+
T Consensus 18 Gdp~S~VAV~TL~S~~~~~~l~~gaAI~G~~~TE-NlGIEKvI~NvisN 65 (176)
T PF04208_consen 18 GDPESPVAVCTLGSHLLQAPLDAGAAIAGPCKTE-NLGIEKVIANVISN 65 (176)
T ss_pred CCCCCCEEEEECccccchhhhhcCceeeeccccc-ccCHHHHHHHHhcC
Confidence 48999999999988655 4566665555 78899999999765
No 22
>TIGR02889 spore_YpeB germination protein YpeB. Members of this family are YpeB, a protein usually encoded with the putative spore-cortex-lytic enzyme SleB and required, together with SleB, for normal germination. This family is retricted to endospore-forming species in the Firmicutes lineage of bacteria, and found in all such species to date except Clostridium perfringens. The matching phenotypes of mutants in SleB (called a lytic transglycosylase) and YpeB suggests that YpeB is necessary to allow SleB to function.
Probab=38.22 E-value=2e+02 Score=30.40 Aligned_cols=97 Identities=22% Similarity=0.322 Sum_probs=62.1
Q ss_pred CcEEEEEEeecCeEEE--EEEEeecccccHHH---HHHHHHhhcCCCCCC--CCCcCCceEEEEeecccChhhhhcccCC
Q psy10894 20 AKVACETVTKTGMVLL--CGEITSKAVVDYQK---VTRETIKHIGYDDSS--KGFDYKTCSVMLCLDEQSPDIAAGVHIN 92 (364)
Q Consensus 20 arVA~Et~v~~~~v~v--~GEitt~a~vd~~~---ivR~~i~~IGY~~~~--~gfd~~~c~V~~~i~~QS~dIa~gV~~~ 92 (364)
..+-|++-.++|.++- -..-..+.++|.++ ++++.|+++||.+-. +--.++...+++.+..|. ||.--
T Consensus 262 ~~~~~~vsk~GG~~i~~l~~R~v~~~~is~~eA~~kA~~fL~~~G~~nm~~ty~~~~d~~~~~~yv~~~~-----gV~iY 336 (435)
T TIGR02889 262 ARIYMNVSKKGGHPLWFLDNRPVSKPKISLNEAVNKAKKFLEKIGFKDMEPTESDKYDNVGVISYVYVQN-----DVRVY 336 (435)
T ss_pred ceEEEEEEcCCCEEEEEEcCCCCCCCCcCHHHHHHHHHHHHHHcCcccceehhhhccCCEEEEEEEEeeC-----CEEEc
Confidence 5588999999998763 22222345676654 789999999998743 122234456677777774 44321
Q ss_pred CCCCCC-CCCCcceeEEe-----ecCCCCCCCchH
Q psy10894 93 RDRDDV-GAGDQGLMFGY-----ATDETEECMPLT 121 (364)
Q Consensus 93 ~~~~~~-GAGDQGimfGY-----A~~ET~~~MPl~ 121 (364)
.+.-++ -|-|.|=+.|| -+++++.=+|-|
T Consensus 337 pd~IkVkVALDnGeIiGf~a~~Yl~~h~~R~ip~p 371 (435)
T TIGR02889 337 PDQIKVKVALDDGDVVGFDARQYLTSHRKRTLPKP 371 (435)
T ss_pred CCeEEEEEEccCCeEEEEecccchhhcccccCCCC
Confidence 110012 48899999999 778876556766
No 23
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=36.33 E-value=36 Score=31.13 Aligned_cols=45 Identities=16% Similarity=0.398 Sum_probs=30.9
Q ss_pred CcHHHH---HHHHHHc--CCCCHHHHHHHhccCCc---chh----------hhccccCCCCCC
Q psy10894 308 RSHKEL---LSIVQRN--FDLRPGKIVKDLNLRNP---IYQ----------QTSTYGHFGRDI 352 (364)
Q Consensus 308 ~~~~~i---~~~v~~~--Fdl~p~~Ii~~L~L~~p---iY~----------~ta~yGHFGr~~ 352 (364)
++..++ ..++.++ -+++-..|-+.|++... .|. +-..|||+|||.
T Consensus 159 Lt~re~~~l~~~i~~~~~~g~s~~eIA~~l~iS~~Tv~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (239)
T PRK10430 159 LTPQTLRTLCQWIDAHQDYEFSTDELANAVNISRVSCRKYLIWLVNCHILFTSIHYGVTGRPV 221 (239)
T ss_pred CCHHHHHHHHHHHHhCCCCCcCHHHHHHHhCchHHHHHHHHHHHHhCCEEEEEeeccCCCCCC
Confidence 444443 3444433 67888999999998764 233 366899999997
No 24
>KOG3447|consensus
Probab=33.18 E-value=15 Score=33.23 Aligned_cols=12 Identities=50% Similarity=0.617 Sum_probs=11.2
Q ss_pred cCCceeEEecCC
Q psy10894 229 LTGRKIIVDTYG 240 (364)
Q Consensus 229 LTGRKiiVDTYG 240 (364)
+||||+.+|||-
T Consensus 95 vTGkk~~~~ty~ 106 (150)
T KOG3447|consen 95 VTGKKCAGDTYL 106 (150)
T ss_pred CcCccccCcchh
Confidence 799999999995
No 25
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=30.33 E-value=1.6e+02 Score=29.12 Aligned_cols=92 Identities=21% Similarity=0.226 Sum_probs=59.5
Q ss_pred cCCCCCCCchHHHHHHHHHHHHHHHHHcCCCceecCCCceeEEEEEee--cCCccceeeEEEEEEEeeeCCCCCHHHHHH
Q psy10894 111 TDETEECMPLTVVLAHKLNQKVADLRRSGEFWWARPDTKTQVTCEYCF--ARGACVPRRVHTVVVSVQHSEKIGLKELRA 188 (364)
Q Consensus 111 ~~ET~~~MPl~i~lAh~L~~~l~~~Rk~~~~~~l~pD~KtQVtv~Y~~--~~~~~~p~ri~tiviS~QH~~~v~~~~l~~ 188 (364)
..+|+|---+-+.++.+|.+-|+++ +|.+. +-|+|.|.. ++| ++..-.+.-+-+-|+++++++-+..
T Consensus 97 sSP~eEkaR~~~~~eQ~le~tLs~m--DGVi~-------ArV~I~lp~~~~~g--~~~~P~saSVfIky~~~~nl~~~v~ 165 (246)
T COG4669 97 SSPTEEKARLNYAKEQQLEQTLSKM--DGVIS-------ARVHISLPEDDDEG--KNALPSSASVFIKYSPDVNLSIYVS 165 (246)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHhc--CceEE-------EEEEEEcCCCCccC--CCCCCceeEEEEEecCCCChhHhHH
Confidence 5667777777788888888887665 36544 345555542 233 4444455666679999999999998
Q ss_pred HHHHHHhhhhcCCCCCCCCcEEEEcCC
Q psy10894 189 EVMSKVIKAVIPADYLDENTIVHINPC 215 (364)
Q Consensus 189 ~i~e~Vi~~v~~~~~~~~~t~~~INPt 215 (364)
.||..|-..+ |. +-=++..+.+-|.
T Consensus 166 ~IK~LV~nSv-~g-L~YenISVVl~~~ 190 (246)
T COG4669 166 QIKRLVANSV-PG-LQYENISVVLVPA 190 (246)
T ss_pred HHHHHHHhcc-CC-CchhceEEEEeec
Confidence 8888776544 42 2224555555553
No 26
>PRK14053 methyltransferase; Provisional
Probab=29.50 E-value=73 Score=30.34 Aligned_cols=41 Identities=15% Similarity=0.307 Sum_probs=33.4
Q ss_pred cCCCCcEEEEEEeecCe----EEEEEEEeecccccHHHHHHHHHhh
Q psy10894 16 QDPDAKVACETVTKTGM----VLLCGEITSKAVVDYQKVTRETIKH 57 (364)
Q Consensus 16 ~Dp~arVA~Et~v~~~~----v~v~GEitt~a~vd~~~ivR~~i~~ 57 (364)
-||+|+||+=||.++-. .-|.|-..|. ++=+++++++++.+
T Consensus 18 G~~~S~VAVvTL~S~~~~~~gaAI~G~c~TE-NlGIEKvI~NvisN 62 (194)
T PRK14053 18 GNPESRIAVVTLASSIESFPEAAIWGSSKTE-NLGVEKIIVNVISN 62 (194)
T ss_pred CCCCCcEEEEEccccccccCCceEEeecccc-ccCHHHHHHHhhcC
Confidence 48999999999998644 5577766665 78899999999765
No 27
>PRK14555 hypothetical protein; Provisional
Probab=29.44 E-value=32 Score=30.93 Aligned_cols=44 Identities=16% Similarity=0.363 Sum_probs=28.0
Q ss_pred EEEecCCCCCcHHHHHHHHHHcCCCCHHHHHHHhccCCcchhhhccccCCCCC
Q psy10894 299 TLFDYGTSSRSHKELLSIVQRNFDLRPGKIVKDLNLRNPIYQQTSTYGHFGRD 351 (364)
Q Consensus 299 ~VdtfgT~~~~~~~i~~~v~~~Fdl~p~~Ii~~L~L~~piY~~ta~yGHFGr~ 351 (364)
.+.+|--.+-+.++..+++.+.|.+.|..+- +....+-||||.+
T Consensus 6 ~i~~~vhaTED~eKV~~Al~n~~~~~~~d~~---------ie~~~~eGh~Gn~ 49 (145)
T PRK14555 6 DLRVFCHATEDEDKVLEALRNFLSIDPEDIE---------IEVEEAEGHYGNP 49 (145)
T ss_pred EEEEEEecccCHHHHHHHHHHHHhcCCCCCc---------eEEEEeecccCCc
Confidence 3344433446778899999988844433321 4455667999975
No 28
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=28.95 E-value=1.4e+02 Score=31.90 Aligned_cols=95 Identities=22% Similarity=0.318 Sum_probs=57.7
Q ss_pred CCCCHHHHHHHHHHHHhhhhcCCCCC-CCCcEEEEcCCC-------C----e------Eec----cCCCCcccCCcee--
Q psy10894 179 EKIGLKELRAEVMSKVIKAVIPADYL-DENTIVHINPCG-------N----F------ILG----GPQVDAGLTGRKI-- 234 (364)
Q Consensus 179 ~~v~~~~l~~~i~e~Vi~~v~~~~~~-~~~t~~~INPtG-------~----F------viG----GP~~DtGLTGRKi-- 234 (364)
|++++++++..-.+...|-.+-.-.+ --+--+.+||.| | | .|| =|.+|-|+.+|-+
T Consensus 104 p~v~~~~vk~La~~mt~KnAl~gLP~GGgKGGi~~dPk~~s~~El~r~~r~f~~eL~~~IGp~~DvpA~DvGt~~rem~~ 183 (454)
T PTZ00079 104 PSVNLSILKFLGFEQIFKNSLTTLPMGGGKGGSDFDPKGKSDNEVMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGY 183 (454)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCCCCcceeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCCCccchhhcCCCHHHHHH
Confidence 58888888887778888877642111 123455667755 1 2 122 2788999877754
Q ss_pred EEecCCCccccccccccCCCCCc---------cchhHhHHHHHHHHHH
Q psy10894 235 IVDTYGGWGAHGGGAFSGKDFTK---------VDRSAAYAARWVAKSL 273 (364)
Q Consensus 235 iVDTYGG~~~HGGGAfSGKDptK---------VDRSaAY~AR~iAKni 273 (364)
|.|+|-=...|--|.+-||..+- -=|-.+|+++..+|..
T Consensus 184 ~~~~y~~~~~~~~gv~TGK~~~~GGs~~r~eATG~Gv~~~~~~~l~~~ 231 (454)
T PTZ00079 184 LFGQYKKLRNNFEGTLTGKNVKWGGSNIRPEATGYGLVYFVLEVLKKL 231 (454)
T ss_pred HHHHHHHHhCCCCceeCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHc
Confidence 56776433222256677777442 2344567777777765
No 29
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=28.59 E-value=48 Score=31.75 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=16.2
Q ss_pred CCCCCchHHHHHHHHHHHHHHH
Q psy10894 114 TEECMPLTVVLAHKLNQKVADL 135 (364)
Q Consensus 114 T~~~MPl~i~lAh~L~~~l~~~ 135 (364)
.+--+|.|+.+||+|++|....
T Consensus 279 ~~~~lP~p~~yA~~~a~~~~~~ 300 (302)
T PF02171_consen 279 GPISLPAPLYYAHKLAKRGRNN 300 (302)
T ss_dssp S--SS-HHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHHhh
Confidence 4556999999999999998653
No 30
>PF03769 Attacin_C: Attacin, C-terminal region; InterPro: IPR005521 This domain is found in attacin, sarcotoxin and diptericin. All members of these proteins are insect antibacterial proteins which are induced by the fat body and subsequently secreted into the hemolymph where they act synergistically to kill the invading microorganism [].; GO: 0005576 extracellular region
Probab=28.34 E-value=1e+02 Score=27.25 Aligned_cols=56 Identities=25% Similarity=0.513 Sum_probs=41.1
Q ss_pred EEEEEEeeeCCCCCHHHHHHHHHHHHhhhhcCCCCCCCCcEEEEcCCCCeEeccCCCCcccCCceeEEecCCCccccccc
Q psy10894 169 HTVVVSVQHSEKIGLKELRAEVMSKVIKAVIPADYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIVDTYGGWGAHGGG 248 (364)
Q Consensus 169 ~tiviS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYGG~~~HGGG 248 (364)
+..-++.+|.+.+...++. +.-...++=+|+|+.. +|-.||+.+|=||
T Consensus 56 ~gas~g~~~~~~~g~td~~----------------~~G~~NL~~S~~g~t~----------------ld~~g~~~k~~~G 103 (122)
T PF03769_consen 56 HGASLGASHTPGFGRTDVS----------------ASGRANLWRSPNGNTS----------------LDANGGYSKHLGG 103 (122)
T ss_pred cceeeeecccCCCCcceee----------------ccceeeeeeCCCCcee----------------EeeccceeeeccC
Confidence 5677788888765532221 2234467888999888 8999999999999
Q ss_pred cccCCCCC
Q psy10894 249 AFSGKDFT 256 (364)
Q Consensus 249 AfSGKDpt 256 (364)
-|.|+.+.
T Consensus 104 p~~~~~~~ 111 (122)
T PF03769_consen 104 PFGGSRWD 111 (122)
T ss_pred CCCCCCCC
Confidence 99988543
No 31
>PRK10568 periplasmic protein; Provisional
Probab=28.27 E-value=1e+02 Score=28.76 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=25.7
Q ss_pred hhhHHHHHHhccCCCCcEEEEEEeecCeEEEEEEEeec
Q psy10894 5 ISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSK 42 (364)
Q Consensus 5 ISDaILDa~L~~Dp~arVA~Et~v~~~~v~v~GEitt~ 42 (364)
|+..|-.+++..+.-..-.+.+-+.+|.|.+.|++.+.
T Consensus 61 I~~~v~~~L~~~~~i~~~~I~V~v~~G~V~L~G~V~s~ 98 (203)
T PRK10568 61 ITAKVKAALVDHDNIKSTDISVKTHQKVVTLSGFVESQ 98 (203)
T ss_pred HHHHHHHHHHhCCCCCCCceEEEEECCEEEEEEEeCCH
Confidence 44555555555432333457778889999999999875
No 32
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=27.62 E-value=56 Score=26.22 Aligned_cols=57 Identities=23% Similarity=0.374 Sum_probs=38.6
Q ss_pred eeEEEEEEEeeeCCCCCHHHHHHHHHHHH-hhhh-cCC---CCCCCCcEEEEcCCCCeEeccC
Q psy10894 166 RRVHTVVVSVQHSEKIGLKELRAEVMSKV-IKAV-IPA---DYLDENTIVHINPCGNFILGGP 223 (364)
Q Consensus 166 ~ri~tiviS~QH~~~v~~~~l~~~i~e~V-i~~v-~~~---~~~~~~t~~~INPtG~FviGGP 223 (364)
.+|.+||-|..=.-++++++|...+ +++ =+|- .|. .+-++...++|=+||++++=|-
T Consensus 4 ~~i~NIva~~~l~~~idL~~la~~~-~~~~YePe~fpgl~~r~~~p~~t~~IF~sGki~itGa 65 (86)
T PF00352_consen 4 FKIVNIVASFDLPFEIDLEELAEEL-ENVEYEPERFPGLIYRLRNPKATVLIFSSGKIVITGA 65 (86)
T ss_dssp EEEEEEEEEEE-SSEB-HHHHHHHS-TTEEEETTTESSEEEEETTTTEEEEEETTSEEEEEEE
T ss_pred cEEEEEEEEEECCCccCHHHHHhhc-cCcEEeeccCCeEEEeecCCcEEEEEEcCCEEEEEec
Confidence 7899999999999999999998766 222 1111 111 1134578899999999987653
No 33
>PRK00964 tetrahydromethanopterin S-methyltransferase subunit A; Provisional
Probab=27.54 E-value=71 Score=31.12 Aligned_cols=41 Identities=22% Similarity=0.337 Sum_probs=32.9
Q ss_pred cCCCCcEEEEEEeecCe--------EEEEEEEeecccccHHHHHHHHHhh
Q psy10894 16 QDPDAKVACETVTKTGM--------VLLCGEITSKAVVDYQKVTRETIKH 57 (364)
Q Consensus 16 ~Dp~arVA~Et~v~~~~--------v~v~GEitt~a~vd~~~ivR~~i~~ 57 (364)
-||+|.||+=||.++.. .-|.|-..|. ++=++++++++|.+
T Consensus 21 Gd~~SpVAV~Tl~S~~~~~~~~~agaAi~G~~~TE-NlGIEKvI~NvisN 69 (225)
T PRK00964 21 GDPESPVAVVTLGSHLLDQPIIDAGAAISGPCHTE-NLGIEKVIANVISN 69 (225)
T ss_pred CCCCCceEEEEccccccccchhhcCceeecccccc-cccHHHHHHHHhcC
Confidence 59999999999998765 3456665555 78899999999765
No 34
>PRK11023 outer membrane lipoprotein; Provisional
Probab=25.63 E-value=1.1e+02 Score=28.23 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=26.9
Q ss_pred hhhHHHHHHhccCCCCc--EEEEEEeecCeEEEEEEEeec
Q psy10894 5 ISDAILDAHLRQDPDAK--VACETVTKTGMVLLCGEITSK 42 (364)
Q Consensus 5 ISDaILDa~L~~Dp~ar--VA~Et~v~~~~v~v~GEitt~ 42 (364)
|+-.|..+ |.+||.-+ -.+.+-+.+|.|.+.|++.+.
T Consensus 50 i~~~V~~a-L~~~~~l~~~~~I~V~v~~G~V~L~G~V~~~ 88 (191)
T PRK11023 50 LELRVNNA-LSKDEQIKKEARINVTAYQGKVLLTGQSPNA 88 (191)
T ss_pred HHHHHHHH-HhhCcccCcCceEEEEEECCEEEEEEEeCCH
Confidence 33344444 45577654 468899999999999999885
No 35
>cd01269 PLX Pollux (PLX) Phosphotyrosine-binding (PTB) domain. Pollux (PLX) Phosphotyrosine-binding (PTB) domain. PLX is calmodulin-binding protein containing a TBC domain, which is conserved from yeast to man, but it only has an N-terminal PTB domain in mammals. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=25.47 E-value=1.9e+02 Score=26.02 Aligned_cols=82 Identities=22% Similarity=0.309 Sum_probs=48.4
Q ss_pred EEEEEEEeecccccHHHHHHHHHhhcCCCCCCCCCcCCceEEEEee---cccChhhhhcccCCCCCCCCCCCCcc----e
Q psy10894 33 VLLCGEITSKAVVDYQKVTRETIKHIGYDDSSKGFDYKTCSVMLCL---DEQSPDIAAGVHINRDRDDVGAGDQG----L 105 (364)
Q Consensus 33 v~v~GEitt~a~vd~~~ivR~~i~~IGY~~~~~gfd~~~c~V~~~i---~~QS~dIa~gV~~~~~~~~~GAGDQG----i 105 (364)
|+..|.+|-..+---+.++++.|++.++.+....=+.+|+..++.- .=.|||=.+-+... ...+|--==|| =
T Consensus 6 ~~~~~~~~~~~~~~~~~li~e~I~K~~~~~~~kr~~nrtm~~~I~~~~v~lispdtK~vl~~k-~f~dISsC~qg~~~~d 84 (129)
T cd01269 6 VLYCGRVTVTHKKAPSSLIDDCIEKFSLHEQQRLKDNRTMLFQVGRFEINLISPDTKSVVLEK-NFKDISSCSQGIKHVD 84 (129)
T ss_pred EEEEeeEEEeeccCChHHHHHHHHHhhhhhhhhccCCcEEEEEEeccceEEEcCCcceEEEec-CccccchhhcCCCCcc
Confidence 5667777765454568899999999999887777777775443321 22345444433311 01111111111 1
Q ss_pred eEEeecCCCC
Q psy10894 106 MFGYATDETE 115 (364)
Q Consensus 106 mfGYA~~ET~ 115 (364)
-|||=|.||.
T Consensus 85 hFgFIcrEs~ 94 (129)
T cd01269 85 HFGFICRESP 94 (129)
T ss_pred eEEEEeccCC
Confidence 5999999987
No 36
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=25.18 E-value=1.3e+02 Score=23.32 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHcCCCceecCCCceeEEEEEee
Q psy10894 126 HKLNQKVADLRRSGEFWWARPDTKTQVTCEYCF 158 (364)
Q Consensus 126 h~L~~~l~~~Rk~~~~~~l~pD~KtQVtv~Y~~ 158 (364)
.+|++.|.++|++|.++ .+|++.|+.
T Consensus 15 ~~l~~~lr~~RR~g~i~-------~~vsi~~~~ 40 (63)
T PF04566_consen 15 EELVKTLRNLRRSGKIS-------KEVSIVYDI 40 (63)
T ss_dssp HHHHHHHHHHHHTTSS--------TTSEEEEET
T ss_pred HHHHHHHHHHhhccCCc-------ceeEEEEec
Confidence 36889999999999877 367888764
No 37
>PF07918 CAP160: CAP160 repeat; InterPro: IPR012418 This region featured in this family is repeated in spinach cold acclimation protein CAP160 (O50054 from SWISSPROT) CAP160 is induced during periods of drought stress; its precise function is unknown but it has been implicated in the stabilisation of membranes, cytoskeletal elements, and ribosomes. By acting as a compatible solute, it may reduce the toxic effects of cellular solutes that accumulate at high concentration []. Other members of this family are also induced by water stress, abscisic acid, and/or low temperature, such as desiccation-responsive protein 29B (Q04980 from SWISSPROT) and CDet11-24 protein (O23764 from SWISSPROT).
Probab=25.11 E-value=39 Score=22.71 Aligned_cols=10 Identities=40% Similarity=0.478 Sum_probs=8.3
Q ss_pred HHHHHHHhcc
Q psy10894 269 VAKSLVKAGL 278 (364)
Q Consensus 269 iAKniVaaGl 278 (364)
.|||+||+.|
T Consensus 14 ~AknvvaSKL 23 (27)
T PF07918_consen 14 SAKNVVASKL 23 (27)
T ss_pred HHHHHHHHhc
Confidence 4899999865
No 38
>PRK04964 hypothetical protein; Provisional
Probab=25.00 E-value=65 Score=25.76 Aligned_cols=30 Identities=20% Similarity=0.452 Sum_probs=20.0
Q ss_pred CCCCCCcceeEEeecCCCCCCCchHHHHHHHHHHHHHHHHHcCCC
Q psy10894 97 DVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKVADLRRSGEF 141 (364)
Q Consensus 97 ~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~~~~ 141 (364)
+||.|||| |+|-+|..|-| .|.++-.+..+
T Consensus 14 ~IgSGd~g------------YiP~Ai~ca~k---~L~~IAad~~L 43 (66)
T PRK04964 14 EIGSGDLG------------YVPDALGCVLK---ALNEIAADEAL 43 (66)
T ss_pred HhcCCccc------------cCcHHHHHHHH---HHHHHhccccC
Confidence 68999998 58998877755 44444443333
No 39
>PRK14030 glutamate dehydrogenase; Provisional
Probab=24.38 E-value=2.2e+02 Score=30.26 Aligned_cols=95 Identities=20% Similarity=0.320 Sum_probs=60.7
Q ss_pred CCCCHHHHHHHHHHHHhhhhcCCCCC-CCCcEEEEcCCC-----------CeE------ec----cCCCCcccCCcee--
Q psy10894 179 EKIGLKELRAEVMSKVIKAVIPADYL-DENTIVHINPCG-----------NFI------LG----GPQVDAGLTGRKI-- 234 (364)
Q Consensus 179 ~~v~~~~l~~~i~e~Vi~~v~~~~~~-~~~t~~~INPtG-----------~Fv------iG----GP~~DtGLTGRKi-- 234 (364)
|++++++++..-.....|-.+-.-.+ --+--+.+||.+ +|+ || =|..|-|...|-+
T Consensus 95 p~v~~~~v~aLa~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~Eler~~r~f~~~L~~~iGp~~DIpApDvgt~~~~M~w 174 (445)
T PRK14030 95 PSVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFSPRGKSDAEIMRFCQAFMLELWRHIGPDTDVPAGDIGVGGREVGY 174 (445)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCCCCceeeecCCCccCCHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCHHHHHH
Confidence 56888888887777777776632111 133456677755 121 32 3677999666654
Q ss_pred EEecCCCccccccccccCCCCCc---cch------hHhHHHHHHHHHH
Q psy10894 235 IVDTYGGWGAHGGGAFSGKDFTK---VDR------SAAYAARWVAKSL 273 (364)
Q Consensus 235 iVDTYGG~~~HGGGAfSGKDptK---VDR------SaAY~AR~iAKni 273 (364)
|.|+|.=...+--|.+-||...- -+| -.+|++|..+|..
T Consensus 175 ~~d~y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~~~~~~~~~~~ 222 (445)
T PRK14030 175 MFGMYKKLTREFTGTLTGKGLEFGGSLIRPEATGFGALYFVHQMLETK 222 (445)
T ss_pred HHHHHHhccCccccEEEccccccCCCCCCCCccHHHHHHHHHHHHHHc
Confidence 67888766555578888888542 344 4568888888765
No 40
>PRK07308 flavodoxin; Validated
Probab=24.24 E-value=1.1e+02 Score=26.13 Aligned_cols=55 Identities=15% Similarity=0.180 Sum_probs=32.5
Q ss_pred HhHHHHHHHHHHHHhcccCeeEEEEE----EEecccceeeEEEEecCCCCCcHHHHHHHHH
Q psy10894 262 AAYAARWVAKSLVKAGLCRRCLVQVS----YAIGVAEPISITLFDYGTSSRSHKELLSIVQ 318 (364)
Q Consensus 262 aAY~AR~iAKniVaaGlA~~cevqls----YAIGva~PvSi~VdtfgT~~~~~~~i~~~v~ 318 (364)
..-+|+.||+.+...|..-++ ..++ ..+...+-|-+-.-|+|.+.++++ +..++.
T Consensus 15 Te~iA~~ia~~l~~~g~~~~~-~~~~~~~~~~l~~~d~vi~g~~t~g~G~~p~~-~~~fl~ 73 (146)
T PRK07308 15 TEEIADIVADKLRELGHDVDV-DECTTVDASDFEDADIAIVATYTYGDGELPDE-IVDFYE 73 (146)
T ss_pred HHHHHHHHHHHHHhCCCceEE-EecccCCHhHhccCCEEEEEeCccCCCCCCHH-HHHHHH
Confidence 445789999988887763221 1111 114455667777778887777643 444444
No 41
>KOG2978|consensus
Probab=23.55 E-value=81 Score=30.59 Aligned_cols=37 Identities=30% Similarity=0.415 Sum_probs=31.2
Q ss_pred EEEEEecccceeeEEEEecCCCCCcHHHHHHHHHHcCC
Q psy10894 285 QVSYAIGVAEPISITLFDYGTSSRSHKELLSIVQRNFD 322 (364)
Q Consensus 285 qlsYAIGva~PvSi~VdtfgT~~~~~~~i~~~v~~~Fd 322 (364)
|--|+||. -|+++-.-++|++|++-.+|.+.++..+-
T Consensus 197 ~~~y~IgE-vPitFvdR~~GeSKLg~~eIv~ylk~l~~ 233 (238)
T KOG2978|consen 197 QHGYTIGE-VPITFVDRTYGESKLGGKEIVQYLKGLLY 233 (238)
T ss_pred ccCceEee-cceEEEeeccccccccHHHHHHHHHHHhh
Confidence 44599995 69999999999999999999988886543
No 42
>PF06786 UPF0253: Uncharacterised protein family (UPF0253); InterPro: IPR009624 This is a group of proteins of unknown function.
Probab=23.17 E-value=76 Score=25.38 Aligned_cols=31 Identities=29% Similarity=0.486 Sum_probs=20.5
Q ss_pred CCCCCCcceeEEeecCCCCCCCchHHHHHHHHHHHHHHHHHcCCCc
Q psy10894 97 DVGAGDQGLMFGYATDETEECMPLTVVLAHKLNQKVADLRRSGEFW 142 (364)
Q Consensus 97 ~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~~~~~ 142 (364)
+||.|||| |+|-+|..|-| .|.++-.+..+|
T Consensus 14 ~IgSGd~g------------YiP~Ai~calk---~Ln~iAad~~Lp 44 (66)
T PF06786_consen 14 QIGSGDQG------------YIPDAIGCALK---TLNDIAADEALP 44 (66)
T ss_pred HhcCCccc------------cCcHHHHHHHH---HHHHHHcccccC
Confidence 68999997 58998877755 444444443333
No 43
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.90 E-value=52 Score=29.95 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.7
Q ss_pred eecCCCCCCCchHHHHHHHHHHH
Q psy10894 109 YATDETEECMPLTVVLAHKLNQK 131 (364)
Q Consensus 109 YA~~ET~~~MPl~i~lAh~L~~~ 131 (364)
.-|-|.|-..|..++++|||-++
T Consensus 9 lGCPeiP~qissaiYls~klkkk 31 (148)
T COG4081 9 LGCPEIPPQISSAIYLSHKLKKK 31 (148)
T ss_pred ecCCCCCccchHHHHHHHHhhcc
Confidence 45999999999999999999876
No 44
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=22.57 E-value=3e+02 Score=19.88 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=34.9
Q ss_pred chhhhhHHHHHHhccCCCCcEEEEEEeecCeEEEEEEEeecccccHHHHHHHHHhhcCCC
Q psy10894 2 CDQISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSKAVVDYQKVTRETIKHIGYD 61 (364)
Q Consensus 2 cDqISDaILDa~L~~Dp~arVA~Et~v~~~~v~v~GEitt~a~vd~~~ivR~~i~~IGY~ 61 (364)
|.--+..|-.++.+.+-- -.+++-..++.+.|.+. ...+++++ +.+.|+++||+
T Consensus 9 C~~C~~~v~~~l~~~~GV--~~v~vd~~~~~v~v~~~---~~~~~~~~-i~~~i~~~Gy~ 62 (62)
T PF00403_consen 9 CEGCAKKVEKALSKLPGV--KSVKVDLETKTVTVTYD---PDKTSIEK-IIEAIEKAGYE 62 (62)
T ss_dssp SHHHHHHHHHHHHTSTTE--EEEEEETTTTEEEEEES---TTTSCHHH-HHHHHHHTTSE
T ss_pred cHHHHHHHHHHHhcCCCC--cEEEEECCCCEEEEEEe---cCCCCHHH-HHHHHHHhCcC
Confidence 334445555565555332 35677888899988652 23367766 77888999995
No 45
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=22.24 E-value=1.2e+02 Score=25.30 Aligned_cols=80 Identities=20% Similarity=0.245 Sum_probs=45.0
Q ss_pred ccC-CCCCccchhHhHHHHHHHHHHHHhcccCeeEEEEEEEecccceeeEEEEecCCCCCcHHHH-HHHHHHcCCCCHHH
Q psy10894 250 FSG-KDFTKVDRSAAYAARWVAKSLVKAGLCRRCLVQVSYAIGVAEPISITLFDYGTSSRSHKEL-LSIVQRNFDLRPGK 327 (364)
Q Consensus 250 fSG-KDptKVDRSaAY~AR~iAKniVaaGlA~~cevqlsYAIGva~PvSi~VdtfgT~~~~~~~i-~~~v~~~Fdl~p~~ 327 (364)
..| ...+-.+.++.=++|-+.+-+-.||+-.+- |.| |+++||+....+.+ .+.+++.|.-...
T Consensus 11 ~dg~~~~~~~~p~~~~~~~~i~~al~~agi~~~~---I~~-----------i~~hg~Gt~~~D~~E~~ai~~~~~~~~~- 75 (119)
T PF02801_consen 11 SDGARSSSLTAPNGAALARAIRRALADAGISPED---IDY-----------IEAHGTGTPLGDAAEAEAIARVFGDSAR- 75 (119)
T ss_dssp E-SSSTSSSSSTTHHHHHHHHHHHHHHHTS-GGG---EEE-----------EE----SSHHHHHHHHHHHHHHHGGGGG-
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHHhhhcccccc---cee-----------eeeeccccccchhhhhhhhhhhhccccc-
Confidence 334 556667766666688899999999987664 677 89999987644444 3466666665433
Q ss_pred HHHHhccCCcchhhhccccCCC
Q psy10894 328 IVKDLNLRNPIYQQTSTYGHFG 349 (364)
Q Consensus 328 Ii~~L~L~~piY~~ta~yGHFG 349 (364)
...-|+=.--+.+||..
T Consensus 76 -----~~~~~v~s~K~~~Gh~~ 92 (119)
T PF02801_consen 76 -----QQPVPVGSVKSNIGHTE 92 (119)
T ss_dssp -----TSTSEEE-THHHH-B-G
T ss_pred -----ccccceecccccccccc
Confidence 11224555556677753
No 46
>KOG1406|consensus
Probab=21.59 E-value=52 Score=33.44 Aligned_cols=21 Identities=43% Similarity=0.612 Sum_probs=17.8
Q ss_pred EEEEcCCCCeE-eccCCCCccc
Q psy10894 209 IVHINPCGNFI-LGGPQVDAGL 229 (364)
Q Consensus 209 ~~~INPtG~Fv-iGGP~~DtGL 229 (364)
+|.|||+|-+. -|=|.|-|||
T Consensus 334 kwvinpsggliskghplgatgl 355 (408)
T KOG1406|consen 334 KWVINPSGGLISKGHPLGATGL 355 (408)
T ss_pred eEEECCCCccccCCCcCccchH
Confidence 89999999875 5779888886
No 47
>KOG2126|consensus
Probab=21.44 E-value=1e+02 Score=35.50 Aligned_cols=52 Identities=31% Similarity=0.526 Sum_probs=37.7
Q ss_pred eeCCCCCHHHHHHHH--HHHHhhhhcCCCCCCCCcEEEEcCCCCeEeccCCCCcccCCceeEEecCCCccccccccc
Q psy10894 176 QHSEKIGLKELRAEV--MSKVIKAVIPADYLDENTIVHINPCGNFILGGPQVDAGLTGRKIIVDTYGGWGAHGGGAF 250 (364)
Q Consensus 176 QH~~~v~~~~l~~~i--~e~Vi~~v~~~~~~~~~t~~~INPtG~FviGGP~~DtGLTGRKiiVDTYGG~~~HGGGAf 250 (364)
-|.-+.+..+|++.+ +++||+.++.. +++||-..| +||=|+|- .|-|||+..
T Consensus 221 GHk~GPdH~~M~~KL~qmD~vI~~ii~~--mdedTlLvV-----------mGDHGMt~----------nGdHGGdS~ 274 (895)
T KOG2126|consen 221 GHKHGPDHPEMADKLVQMDRVINEIIKK--MDEDTLLVV-----------MGDHGMTD----------NGDHGGDSE 274 (895)
T ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHH--hccCeeEEE-----------ecCCCCCC----------CCCCCCccH
Confidence 455567777887755 45688888864 788887766 67888764 359999975
No 48
>smart00760 Bac_DnaA_C Bacterial dnaA protein helix-turn-helix domain. Could be involved in DNA-binding.
Probab=21.26 E-value=98 Score=23.12 Aligned_cols=24 Identities=17% Similarity=0.398 Sum_probs=20.4
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHhc
Q psy10894 310 HKELLSIVQRNFDLRPGKIVKDLN 333 (364)
Q Consensus 310 ~~~i~~~v~~~Fdl~p~~Ii~~L~ 333 (364)
-++|.+.|.+.|+++|..|...=.
T Consensus 2 ~~~I~~~Va~~~~i~~~~i~s~~R 25 (60)
T smart00760 2 IEEIIEAVAEYFGVKPEDLKSKSR 25 (60)
T ss_pred HHHHHHHHHHHhCCCHHHHhcCCC
Confidence 478999999999999999976544
No 49
>COG2823 OsmY Predicted periplasmic or secreted lipoprotein [General function prediction only]
Probab=21.21 E-value=1.5e+02 Score=28.11 Aligned_cols=39 Identities=26% Similarity=0.274 Sum_probs=28.6
Q ss_pred hhhhHHHHHHhccCCCCcEEEEEEeecCeEEEEEEEeec
Q psy10894 4 QISDAILDAHLRQDPDAKVACETVTKTGMVLLCGEITSK 42 (364)
Q Consensus 4 qISDaILDa~L~~Dp~arVA~Et~v~~~~v~v~GEitt~ 42 (364)
+|...|=+++|..+.---.=+++.+.+|.|++.|.+.|.
T Consensus 131 ~iTt~Vka~Ll~~~~v~s~~IkV~t~~g~V~L~G~V~s~ 169 (196)
T COG2823 131 WITTKVKAALLGDDNVKSSNIKVETENGEVYLSGLVDSQ 169 (196)
T ss_pred HHHHHHHHHhccCCCCCcceEEEEEECCEEEEEEEeCCH
Confidence 455566677777765433348888899999999999664
No 50
>TIGR01111 mtrA N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit A. coenzyme M methyltransferase subunit A in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase (encoded by subunit A) is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase.
Probab=20.59 E-value=1.2e+02 Score=29.85 Aligned_cols=41 Identities=20% Similarity=0.275 Sum_probs=31.8
Q ss_pred cCCCCcEEEEEEeecCe--------EEEEEEEeecccccHHHHHHHHHhh
Q psy10894 16 QDPDAKVACETVTKTGM--------VLLCGEITSKAVVDYQKVTRETIKH 57 (364)
Q Consensus 16 ~Dp~arVA~Et~v~~~~--------v~v~GEitt~a~vd~~~ivR~~i~~ 57 (364)
-||+|.||+=|+.++.. .-+.|-..|. ++=+++++++++.+
T Consensus 21 Gd~~SpVAV~TL~Sh~~~~~i~~agaAI~G~~~TE-NlGIEKvIaNvisN 69 (238)
T TIGR01111 21 GDPESPVLVVTLGSHIEEQIILDAGAAIAGPCKTE-NLGIEKVVANIISN 69 (238)
T ss_pred cCCCCceEEEEccccccccchhhcCceeecccccc-ccCHHHHHHHHhcC
Confidence 48999999999988754 3455655554 78899999999765
No 51
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=20.27 E-value=1.7e+02 Score=21.47 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=17.2
Q ss_pred EEEEEeecCeEEEEEEEeecc
Q psy10894 23 ACETVTKTGMVLLCGEITSKA 43 (364)
Q Consensus 23 A~Et~v~~~~v~v~GEitt~a 43 (364)
-+++.+.+|.|++.|++.+..
T Consensus 18 ~i~v~v~~g~v~L~G~v~s~~ 38 (64)
T PF04972_consen 18 NISVSVENGVVTLSGEVPSQE 38 (64)
T ss_dssp TEEEEEECTEEEEEEEESSCH
T ss_pred eEEEEEECCEEEEEeeCcHHH
Confidence 367777899999999997753
No 52
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=20.12 E-value=69 Score=37.23 Aligned_cols=18 Identities=33% Similarity=0.575 Sum_probs=15.8
Q ss_pred CCCCchHHHHHHHHHHHH
Q psy10894 115 EECMPLTVVLAHKLNQKV 132 (364)
Q Consensus 115 ~~~MPl~i~lAh~L~~~l 132 (364)
..|.||+|.||.+|.+..
T Consensus 325 ~~l~~~~~~~~~~l~~~f 342 (1012)
T TIGR03315 325 RALFPLSINLAAKLSREF 342 (1012)
T ss_pred CccccchHHHHHhhHHhh
Confidence 457899999999999987
Done!